Query 037791
Match_columns 295
No_of_seqs 177 out of 307
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:24:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04059 RRM_2: RNA recognitio 100.0 2E-45 4.4E-50 297.1 10.9 97 116-225 1-97 (97)
2 KOG4660 Protein Mei2, essentia 100.0 6.5E-41 1.4E-45 332.8 14.1 144 109-254 354-512 (549)
3 KOG0122 Translation initiation 99.7 7.2E-18 1.6E-22 156.0 11.9 143 35-215 117-269 (270)
4 KOG0145 RNA-binding protein EL 99.5 8.5E-14 1.8E-18 130.9 7.5 85 112-215 37-121 (360)
5 PLN03134 glycine-rich RNA-bind 99.3 1.4E-11 3E-16 105.1 10.1 84 112-214 30-113 (144)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 1.4E-11 3E-16 114.5 9.4 83 114-215 1-83 (352)
7 PF00076 RRM_1: RNA recognitio 99.1 2.5E-10 5.5E-15 81.6 7.5 66 119-198 1-66 (70)
8 TIGR01659 sex-lethal sex-letha 99.1 2.6E-10 5.7E-15 110.0 9.9 85 112-215 103-187 (346)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.1 2.9E-10 6.3E-15 105.7 9.6 78 118-214 271-348 (352)
10 smart00362 RRM_2 RNA recogniti 99.0 3.7E-09 8E-14 73.5 8.1 65 118-197 1-65 (72)
11 TIGR01659 sex-lethal sex-letha 98.9 3.4E-09 7.3E-14 102.3 9.9 87 115-218 192-278 (346)
12 PF14259 RRM_6: RNA recognitio 98.9 3.6E-09 7.7E-14 77.1 7.0 65 119-197 1-65 (70)
13 smart00360 RRM RNA recognition 98.9 5.5E-09 1.2E-13 72.2 7.4 64 121-197 1-64 (71)
14 TIGR01622 SF-CC1 splicing fact 98.9 5.4E-09 1.2E-13 101.1 9.4 79 116-213 186-264 (457)
15 TIGR01628 PABP-1234 polyadenyl 98.9 5E-09 1.1E-13 104.7 9.4 78 117-213 1-78 (562)
16 cd00590 RRM RRM (RNA recogniti 98.9 1.8E-08 3.8E-13 70.4 8.9 74 118-211 1-74 (74)
17 TIGR01642 U2AF_lg U2 snRNP aux 98.9 9.9E-09 2.1E-13 100.4 10.2 84 113-215 292-375 (509)
18 COG0724 RNA-binding proteins ( 98.9 1.4E-08 3E-13 85.4 9.1 83 116-217 115-199 (306)
19 TIGR01648 hnRNP-R-Q heterogene 98.8 3.3E-08 7.2E-13 101.5 10.2 71 113-197 55-125 (578)
20 TIGR01628 PABP-1234 polyadenyl 98.8 2.9E-08 6.4E-13 99.2 9.5 81 114-214 283-363 (562)
21 KOG4207 Predicted splicing fac 98.7 2E-08 4.3E-13 92.4 6.7 86 112-216 9-94 (256)
22 TIGR01645 half-pint poly-U bin 98.7 5.7E-08 1.2E-12 100.4 10.0 81 114-213 202-282 (612)
23 PF03467 Smg4_UPF3: Smg-4/UPF3 98.7 1.4E-08 3E-13 89.8 4.6 150 114-277 5-175 (176)
24 TIGR01645 half-pint poly-U bin 98.6 9.9E-08 2.1E-12 98.6 8.7 72 113-197 104-175 (612)
25 TIGR01622 SF-CC1 splicing fact 98.6 2.9E-07 6.2E-12 89.2 11.3 68 116-197 89-156 (457)
26 PLN03120 nucleic acid binding 98.5 6.6E-07 1.4E-11 84.2 9.2 75 116-213 4-78 (260)
27 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.5 6.3E-07 1.4E-11 89.1 9.4 77 115-215 274-351 (481)
28 KOG0117 Heterogeneous nuclear 98.5 5.1E-07 1.1E-11 90.2 8.4 80 114-211 81-160 (506)
29 smart00361 RRM_1 RNA recogniti 98.4 1.1E-06 2.4E-11 65.6 7.1 59 130-197 2-63 (70)
30 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.4 1.7E-06 3.6E-11 86.1 10.2 85 116-215 394-480 (481)
31 KOG0117 Heterogeneous nuclear 98.4 7.3E-07 1.6E-11 89.1 7.3 102 90-219 234-335 (506)
32 TIGR01648 hnRNP-R-Q heterogene 98.4 1.5E-06 3.3E-11 89.4 9.6 79 113-216 230-308 (578)
33 KOG0113 U1 small nuclear ribon 98.3 3.8E-06 8.3E-11 80.6 9.6 99 95-215 83-181 (335)
34 KOG0125 Ataxin 2-binding prote 98.2 6.3E-06 1.4E-10 80.1 9.8 84 109-213 89-172 (376)
35 KOG0108 mRNA cleavage and poly 98.1 1.6E-05 3.4E-10 79.7 10.2 92 117-227 19-110 (435)
36 PLN03121 nucleic acid binding 98.0 2.8E-05 6E-10 72.8 9.1 77 117-215 6-82 (243)
37 PLN03213 repressor of silencin 98.0 2.6E-05 5.6E-10 79.4 9.5 90 113-225 7-98 (759)
38 KOG0148 Apoptosis-promoting RN 98.0 2E-05 4.3E-10 75.2 8.0 86 107-217 155-240 (321)
39 KOG0145 RNA-binding protein EL 97.9 4.9E-05 1.1E-09 72.5 9.6 102 66-212 254-355 (360)
40 KOG0107 Alternative splicing f 97.9 2.7E-05 5.8E-10 70.3 7.1 79 114-216 8-86 (195)
41 KOG0131 Splicing factor 3b, su 97.9 2.1E-05 4.6E-10 71.3 6.5 84 111-213 4-87 (203)
42 PF13893 RRM_5: RNA recognitio 97.9 4.4E-05 9.6E-10 54.0 6.8 49 153-212 8-56 (56)
43 KOG0127 Nucleolar protein fibr 97.9 3.1E-05 6.7E-10 79.4 8.0 78 116-213 117-194 (678)
44 KOG0148 Apoptosis-promoting RN 97.9 3.4E-05 7.3E-10 73.6 7.7 131 113-243 3-209 (321)
45 KOG0147 Transcriptional coacti 97.9 1.8E-05 3.8E-10 80.7 5.2 82 119-216 281-362 (549)
46 KOG0144 RNA-binding protein CU 97.8 6.6E-05 1.4E-09 75.3 8.7 83 116-214 34-116 (510)
47 KOG4208 Nucleolar RNA-binding 97.7 0.0001 2.2E-09 67.8 7.4 84 114-215 47-130 (214)
48 TIGR01642 U2AF_lg U2 snRNP aux 97.7 0.00013 2.9E-09 71.6 8.7 55 153-213 443-500 (509)
49 KOG0123 Polyadenylate-binding 97.6 0.00013 2.7E-09 71.6 7.2 66 126-213 8-73 (369)
50 KOG4206 Spliceosomal protein s 97.6 9.7E-05 2.1E-09 68.3 5.9 78 118-213 11-88 (221)
51 KOG0127 Nucleolar protein fibr 97.6 0.00018 3.9E-09 74.0 7.5 85 110-213 286-376 (678)
52 KOG0149 Predicted RNA-binding 97.5 0.00017 3.8E-09 67.4 5.9 66 114-192 10-75 (247)
53 KOG0144 RNA-binding protein CU 97.4 0.00018 3.8E-09 72.3 5.4 83 118-217 126-208 (510)
54 KOG0132 RNA polymerase II C-te 97.3 0.00085 1.9E-08 71.2 9.3 79 116-219 421-499 (894)
55 KOG0111 Cyclophilin-type pepti 97.3 0.0002 4.4E-09 67.0 4.2 83 115-216 9-91 (298)
56 KOG4212 RNA-binding protein hn 97.3 0.00057 1.2E-08 69.0 7.3 74 115-212 535-608 (608)
57 KOG0123 Polyadenylate-binding 97.3 0.00028 6.1E-09 69.2 5.0 71 113-197 164-234 (369)
58 KOG1295 Nonsense-mediated deca 97.2 0.00024 5.1E-09 70.1 3.5 75 114-200 5-81 (376)
59 KOG0114 Predicted RNA-binding 97.2 0.0014 3E-08 55.4 7.2 70 113-198 15-84 (124)
60 KOG4212 RNA-binding protein hn 97.1 0.0022 4.7E-08 65.0 9.3 67 118-197 46-112 (608)
61 KOG0110 RNA-binding protein (R 97.1 0.00052 1.1E-08 72.0 4.6 80 116-214 613-692 (725)
62 KOG0105 Alternative splicing f 97.0 0.0012 2.5E-08 60.7 5.5 76 117-215 7-83 (241)
63 KOG0146 RNA-binding protein ET 97.0 0.0015 3.3E-08 62.7 6.1 74 110-197 280-353 (371)
64 KOG0121 Nuclear cap-binding pr 96.8 0.0043 9.3E-08 54.1 7.3 81 113-212 33-113 (153)
65 KOG0533 RRM motif-containing p 96.6 0.0093 2E-07 56.0 7.9 71 113-197 79-150 (243)
66 KOG0126 Predicted RNA-binding 96.4 0.00044 9.5E-09 63.1 -1.9 69 116-197 35-103 (219)
67 KOG0109 RNA-binding protein LA 96.1 0.004 8.7E-08 60.3 3.0 91 118-235 4-94 (346)
68 KOG0130 RNA-binding protein RB 96.1 0.017 3.6E-07 51.0 6.3 82 118-218 74-155 (170)
69 PF07576 BRAP2: BRCA1-associat 95.9 0.068 1.5E-06 44.6 9.2 81 116-212 12-92 (110)
70 KOG0131 Splicing factor 3b, su 95.9 0.021 4.6E-07 52.2 6.5 86 112-215 92-177 (203)
71 KOG1457 RNA binding protein (c 95.9 0.09 1.9E-06 49.7 10.6 88 114-217 32-120 (284)
72 KOG0120 Splicing factor U2AF, 95.8 0.01 2.2E-07 60.8 4.5 86 113-217 286-371 (500)
73 KOG0226 RNA-binding proteins [ 95.7 0.027 5.8E-07 53.8 6.6 67 118-197 192-258 (290)
74 KOG0110 RNA-binding protein (R 95.7 0.028 6E-07 59.5 7.0 81 113-213 512-596 (725)
75 KOG0124 Polypyrimidine tract-b 95.5 0.017 3.7E-07 57.7 4.5 72 114-198 111-182 (544)
76 KOG0153 Predicted RNA-binding 95.3 0.055 1.2E-06 53.5 7.4 77 114-214 226-302 (377)
77 KOG0415 Predicted peptidyl pro 94.7 0.053 1.1E-06 54.1 5.3 69 117-198 240-308 (479)
78 KOG0106 Alternative splicing f 94.4 0.045 9.8E-07 50.7 3.9 126 118-270 3-173 (216)
79 KOG0124 Polypyrimidine tract-b 94.3 0.084 1.8E-06 52.9 5.7 71 113-196 207-277 (544)
80 KOG2314 Translation initiation 94.2 0.085 1.8E-06 55.1 5.7 75 115-199 57-133 (698)
81 KOG0804 Cytoplasmic Zn-finger 93.6 0.32 7E-06 49.6 8.5 81 116-213 74-154 (493)
82 KOG0151 Predicted splicing reg 93.5 0.18 3.9E-06 54.0 6.7 90 108-213 166-255 (877)
83 KOG0146 RNA-binding protein ET 93.4 0.34 7.3E-06 47.1 7.8 85 118-219 21-105 (371)
84 KOG4660 Protein Mei2, essentia 93.3 0.37 8E-06 50.1 8.4 63 117-197 76-138 (549)
85 KOG0116 RasGAP SH3 binding pro 93.1 0.13 2.9E-06 51.8 5.0 65 114-191 286-350 (419)
86 KOG2416 Acinus (induces apopto 93.0 0.58 1.3E-05 49.4 9.4 88 116-228 444-531 (718)
87 KOG0109 RNA-binding protein LA 92.3 0.11 2.4E-06 50.5 3.0 63 114-197 76-138 (346)
88 KOG1190 Polypyrimidine tract-b 91.9 0.42 9.2E-06 48.5 6.6 82 112-215 410-491 (492)
89 PF11608 Limkain-b1: Limkain b 91.9 0.85 1.8E-05 37.3 7.2 77 116-216 2-78 (90)
90 KOG4205 RNA-binding protein mu 91.7 0.6 1.3E-05 45.5 7.3 76 118-213 99-174 (311)
91 KOG3152 TBP-binding protein, a 91.7 0.22 4.8E-06 47.6 4.2 67 118-197 76-154 (278)
92 KOG4205 RNA-binding protein mu 90.5 0.26 5.6E-06 47.9 3.5 71 115-198 5-79 (311)
93 PF08777 RRM_3: RNA binding mo 89.7 0.81 1.7E-05 37.5 5.4 58 118-194 3-60 (105)
94 KOG4209 Splicing factor RNPS1, 89.4 0.63 1.4E-05 43.3 5.1 81 115-215 100-180 (231)
95 KOG1548 Transcription elongati 89.3 2.3 5E-05 42.4 9.0 94 112-217 130-223 (382)
96 KOG4661 Hsp27-ERE-TATA-binding 85.8 6 0.00013 42.2 10.0 77 118-213 407-483 (940)
97 KOG0106 Alternative splicing f 84.3 1.2 2.5E-05 41.5 3.8 65 112-197 95-159 (216)
98 KOG4206 Spliceosomal protein s 83.6 4.8 0.0001 37.8 7.4 75 116-213 146-220 (221)
99 KOG4211 Splicing factor hnRNP- 82.2 3.5 7.5E-05 42.7 6.5 64 114-190 101-164 (510)
100 KOG1365 RNA-binding protein Fu 80.7 2.1 4.6E-05 43.4 4.3 79 116-213 280-360 (508)
101 KOG0120 Splicing factor U2AF, 80.4 5.1 0.00011 41.6 7.0 46 153-198 433-481 (500)
102 KOG1548 Transcription elongati 78.9 5 0.00011 40.1 6.1 41 153-197 300-340 (382)
103 KOG1457 RNA binding protein (c 78.9 3 6.5E-05 39.8 4.4 72 110-198 204-275 (284)
104 KOG0147 Transcriptional coacti 76.9 8.7 0.00019 40.2 7.4 54 153-217 477-530 (549)
105 KOG4454 RNA binding protein (R 76.1 1.9 4.2E-05 40.9 2.3 65 118-197 11-75 (267)
106 KOG2193 IGF-II mRNA-binding pr 75.3 5.2 0.00011 41.2 5.2 76 118-217 3-78 (584)
107 PF07145 PAM2: Ataxin-2 C-term 72.2 2.8 6.1E-05 25.0 1.5 14 9-22 4-17 (18)
108 KOG4211 Splicing factor hnRNP- 67.8 13 0.00028 38.6 6.2 58 117-190 11-68 (510)
109 PF04847 Calcipressin: Calcipr 64.9 16 0.00035 33.0 5.7 52 153-217 20-73 (184)
110 COG5175 MOT2 Transcriptional r 62.1 15 0.00032 37.1 5.2 85 113-213 111-201 (480)
111 KOG0128 RNA-binding protein SA 59.9 1.7 3.6E-05 47.4 -1.8 83 117-218 668-750 (881)
112 KOG1190 Polypyrimidine tract-b 59.7 37 0.0008 35.0 7.6 90 117-230 298-397 (492)
113 PF14026 DUF4242: Protein of u 57.1 89 0.0019 24.3 7.8 70 119-197 3-72 (77)
114 KOG1456 Heterogeneous nuclear 56.3 52 0.0011 33.7 7.9 86 117-216 407-492 (494)
115 PF15023 DUF4523: Protein of u 56.3 24 0.00052 31.7 5.0 63 116-195 86-149 (166)
116 KOG4410 5-formyltetrahydrofola 52.6 23 0.0005 35.0 4.7 60 107-184 321-380 (396)
117 KOG4849 mRNA cleavage factor I 51.8 28 0.00061 35.3 5.3 72 113-197 77-150 (498)
118 PF14605 Nup35_RRM_2: Nup53/35 48.2 59 0.0013 23.4 5.2 51 117-187 2-52 (53)
119 KOG4307 RNA binding protein RB 47.2 48 0.001 36.4 6.4 71 114-197 865-935 (944)
120 KOG0105 Alternative splicing f 47.2 1.3E+02 0.0028 28.3 8.4 65 114-198 113-177 (241)
121 KOG1365 RNA-binding protein Fu 44.9 53 0.0012 33.7 6.0 66 114-189 159-224 (508)
122 KOG2591 c-Mpl binding protein, 41.8 55 0.0012 35.0 5.7 66 114-197 173-245 (684)
123 KOG1995 Conserved Zn-finger pr 39.3 70 0.0015 32.1 5.8 107 97-214 46-153 (351)
124 PF03468 XS: XS domain; Inter 36.3 98 0.0021 26.0 5.5 59 118-192 10-81 (116)
125 KOG0112 Large RNA-binding prot 33.1 36 0.00078 38.0 3.0 70 112-199 369-441 (975)
126 KOG4210 Nuclear localization s 32.8 37 0.00081 32.6 2.7 64 114-190 183-246 (285)
127 KOG0129 Predicted RNA-binding 29.6 1.6E+02 0.0034 31.2 6.7 68 111-190 365-432 (520)
128 PF07292 NID: Nmi/IFP 35 domai 29.3 22 0.00049 28.8 0.5 25 116-140 52-76 (88)
129 PF15359 CDV3: Carnitine defic 28.2 65 0.0014 27.8 3.2 13 78-90 85-97 (129)
130 COG1199 DinG Rad3-related DNA 27.1 1.6E+02 0.0036 30.5 6.5 94 170-279 478-574 (654)
131 PF11030 Nucleocapsid-N: Nucle 26.5 35 0.00077 30.0 1.3 14 10-23 4-17 (167)
132 PF08121 Toxin_33: Waglerin fa 25.1 45 0.00096 20.6 1.2 14 45-58 8-21 (22)
133 PF05573 NosL: NosL; InterPro 24.4 70 0.0015 27.4 2.8 31 167-197 110-140 (149)
134 PF11767 SET_assoc: Histone ly 24.2 2.2E+02 0.0049 21.8 5.2 48 128-197 12-59 (66)
135 KOG4019 Calcineurin-mediated s 22.1 2.7E+02 0.0059 25.9 6.1 87 170-275 50-137 (193)
No 1
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=100.00 E-value=2e-45 Score=297.11 Aligned_cols=97 Identities=56% Similarity=0.983 Sum_probs=94.8
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
|||||||||||+|||++|+++||++| .|+||||||||||+++||+|||||||+++++|.+|++.|+|++
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~-----------~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~ 69 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHF-----------KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKK 69 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhc-----------cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCc
Confidence 89999999999999999999999976 7999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCceEEEEeccCcChHHHHHHhc
Q 037791 196 WEVEAPGNKKMCEIACADIQGRDALEKHFE 225 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAriQGk~aLv~hFr 225 (295)
|+.++ |+|+|+|+||++||+++|++|||
T Consensus 70 w~~~~--s~Kvc~i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 70 WPNFN--SKKVCEISYARIQGKDALVEHFR 97 (97)
T ss_pred cccCC--CCcEEEEehhHhhCHHHHHHhhC
Confidence 99987 99999999999999999999996
No 2
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.5e-41 Score=332.78 Aligned_cols=144 Identities=42% Similarity=0.773 Sum_probs=133.3
Q ss_pred cccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccC---------------ccCCCccEEEecccccCCcceee
Q 037791 109 YGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKW---------------HCKSEFDFLYLPMDFRRRANLGY 173 (295)
Q Consensus 109 ~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~---------------~~~G~YDFlYLPiDf~t~~N~GY 173 (295)
++...+.|||+||+||||+++|.||..|+|.||..+|.++.+ .-.|.|||+||||||+++||+||
T Consensus 354 ~~~~~~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGY 433 (549)
T KOG4660|consen 354 ILNYRDRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGY 433 (549)
T ss_pred ccccccchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccce
Confidence 456678999999999999999999999999999998877642 33899999999999999999999
Q ss_pred EEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEeccCcChHHHHHHhcccccccCCCCccceeeeCCCCCCCCCCc
Q 037791 174 AFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCHTDGYLPVILSPPRDGWNYSKP 253 (295)
Q Consensus 174 AFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyAriQGk~aLv~hFrnS~v~~~~~eyrP~iF~p~rdG~~~~~~ 253 (295)
|||||++++++++|+++|||+.|.+|+ |.|||+|+||+|||+++|++||+||++|||++.|+|+||+|++||-...++
T Consensus 434 AFINm~sp~ai~~F~kAFnGk~W~~Fn--S~Kia~itYArIQGk~~Li~hFqnS~lm~E~e~y~Pvvf~pp~dg~~~~~p 511 (549)
T KOG4660|consen 434 AFINMTSPEAIIRFYKAFNGKKWEKFN--SEKIASITYARIQGKEALIEHFQNSSLMCEDEAYRPVVFSPPEDGREEPEP 511 (549)
T ss_pred eEEeecCHHHHHHHHHHHcCCchhhhc--ceeeeeeehhhhhchHHHHHHhhcccccccchhcCceEecCcccccccCcc
Confidence 999999999999999999999999998 999999999999999999999999999999999999999999999855544
Q ss_pred e
Q 037791 254 I 254 (295)
Q Consensus 254 ~ 254 (295)
.
T Consensus 512 ~ 512 (549)
T KOG4660|consen 512 V 512 (549)
T ss_pred c
Confidence 3
No 3
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=7.2e-18 Score=156.02 Aligned_cols=143 Identities=18% Similarity=0.284 Sum_probs=113.5
Q ss_pred CCceee------ecccccCCccccCCCCCCccCCcCCCCCCCCCccccc----ccccccCCccCCcccccccCCccCCCC
Q 037791 35 APVMTC------HRRLSCKPKCFYQPKPPVWCSHSANVVPPYNNDNVKA----KVAVTRPLTMRGKVVGHKRNLKWAPKN 104 (295)
Q Consensus 35 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~r~~~~~p~~ 104 (295)
+-+|.| |--..|.-|--+.| ++++++..+.+.+.+ +.|+|+||+||.+.. +.++ +|...
T Consensus 117 ~~~~~CR~C~gdHwt~~CPyK~~~~~--------~lde~~~~e~~~~~~ap~~~~g~yvpP~mR~ga~-~~~g-~~~R~- 185 (270)
T KOG0122|consen 117 KSIVACRICKGDHWTTNCPYKDTLSP--------ALDEPATAESPAESAAPGTKKGKYVPPSMRAGAD-RASG-SDMRE- 185 (270)
T ss_pred cceeeeeecCCCeeeecCCchhhccc--------cccCCcccccchhhcCcCCcCccccCccccCCcc-cccc-ccccc-
Confidence 345666 55556666666655 455555544444444 349999999997732 2223 45442
Q ss_pred CCcccccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHH
Q 037791 105 RDDVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGA 184 (295)
Q Consensus 105 ~~~~~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA 184 (295)
.++-.||.|-|||.++++.+|+++|-. +|.+--+||.+|..|+..+|||||+|.+.+||
T Consensus 186 --------R~D~~tvRvtNLsed~~E~dL~eLf~~-------------fg~i~rvylardK~TG~~kGFAFVtF~sRddA 244 (270)
T KOG0122|consen 186 --------RDDEATVRVTNLSEDMREDDLEELFRP-------------FGPITRVYLARDKETGLSKGFAFVTFESRDDA 244 (270)
T ss_pred --------CCccceeEEecCccccChhHHHHHhhc-------------cCccceeEEEEccccCcccceEEEEEecHHHH
Confidence 456779999999999999999999987 88999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccccCCCCCceEEEEeccCc
Q 037791 185 LRFWKACNKYKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 185 ~~F~~~fnG~~w~~~~~gS~KiceVsyAriQ 215 (295)
+++++.+||+.|.++ |+.|+||++|
T Consensus 245 ~rAI~~LnG~gyd~L------ILrvEwskP~ 269 (270)
T KOG0122|consen 245 ARAIADLNGYGYDNL------ILRVEWSKPS 269 (270)
T ss_pred HHHHHHccCcccceE------EEEEEecCCC
Confidence 999999999999976 8999999987
No 4
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=8.5e-14 Score=130.91 Aligned_cols=85 Identities=22% Similarity=0.335 Sum_probs=79.8
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
..+.+|+|+|.+||..+||++|+.+|.+ .|+++.+-|..|..++.++||+|||+.+++||++++..+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~S-------------iGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~Aintl 103 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGS-------------IGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTL 103 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhc-------------ccceeeeeeeeccccccccccceeeecChHHHHHHHhhh
Confidence 3577999999999999999999999998 688999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccCc
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQ 215 (295)
||.++. .|+++|+|||+-
T Consensus 104 NGLrLQ------~KTIKVSyARPS 121 (360)
T KOG0145|consen 104 NGLRLQ------NKTIKVSYARPS 121 (360)
T ss_pred cceeec------cceEEEEeccCC
Confidence 999996 679999999963
No 5
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.30 E-value=1.4e-11 Score=105.10 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=77.1
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
.....|+|+|.|||..+|+++|+++|.. +|.+..+.++.|..|+.++|||||.|.+.++|..+++.+
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~-------------~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~l 96 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAH-------------FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhc-------------CCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHc
Confidence 4567889999999999999999999997 788999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccC
Q 037791 192 NKYKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAri 214 (295)
||+.+. .+.+.|.||+-
T Consensus 97 ng~~i~------Gr~l~V~~a~~ 113 (144)
T PLN03134 97 DGKELN------GRHIRVNPAND 113 (144)
T ss_pred CCCEEC------CEEEEEEeCCc
Confidence 999875 45899999864
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.28 E-value=1.4e-11 Score=114.53 Aligned_cols=83 Identities=20% Similarity=0.348 Sum_probs=76.0
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
|.+|||+|+|||.++|+++|+++|.+ +|.+.-+.|..|..++.++|||||.|.+.++|.++++.+||
T Consensus 1 ~~~~~l~V~nLp~~~~e~~l~~~F~~-------------~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g 67 (352)
T TIGR01661 1 ESKTNLIVNYLPQTMTQEEIRSLFTS-------------IGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNG 67 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHc-------------cCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhccc
Confidence 45899999999999999999999998 78999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccCc
Q 037791 194 YKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQ 215 (295)
..+. .+.+.|.||+..
T Consensus 68 ~~l~------g~~i~v~~a~~~ 83 (352)
T TIGR01661 68 LRLQ------NKTIKVSYARPS 83 (352)
T ss_pred EEEC------CeeEEEEeeccc
Confidence 8875 557899998743
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.12 E-value=2.5e-10 Score=81.58 Aligned_cols=66 Identities=20% Similarity=0.328 Sum_probs=61.7
Q ss_pred EEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccc
Q 037791 119 LMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEV 198 (295)
Q Consensus 119 VMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~ 198 (295)
|+|+|||..+|+++|+++|.+ +|.+..+.+..+ .++...|||||.|.+.++|.++++.+||+.|..
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~-------------~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQ-------------FGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHT-------------TSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHH-------------hhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 789999999999999999998 788888999988 788899999999999999999999999999863
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.12 E-value=2.6e-10 Score=109.95 Aligned_cols=85 Identities=21% Similarity=0.364 Sum_probs=77.0
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
.....|||.|.|||.++|+++|+++|.. +|.+..+.|..|..++.++|||||.|.++++|.++++.+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~-------------~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~L 169 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRT-------------IGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNL 169 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHc
Confidence 3456899999999999999999999997 688899999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccCc
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQ 215 (295)
||..+. .+.+.|.||+..
T Consensus 170 nG~~l~------gr~i~V~~a~p~ 187 (346)
T TIGR01659 170 NGITVR------NKRLKVSYARPG 187 (346)
T ss_pred CCCccC------Cceeeeeccccc
Confidence 998874 567899998753
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.11 E-value=2.9e-10 Score=105.68 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=73.1
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
+|.|+|||.++++++|.++|.. +|.+..+.+..|..|+.++|||||.|.+.++|..+++.+||..+.
T Consensus 271 ~lfV~NL~~~~~e~~L~~~F~~-------------fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~ 337 (352)
T TIGR01661 271 CIFVYNLSPDTDETVLWQLFGP-------------FGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLG 337 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-------------CCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEEC
Confidence 6999999999999999999997 788999999999999999999999999999999999999999885
Q ss_pred ccCCCCCceEEEEeccC
Q 037791 198 VEAPGNKKMCEIACADI 214 (295)
Q Consensus 198 ~~~~gS~KiceVsyAri 214 (295)
++.+.|+|+.-
T Consensus 338 ------gr~i~V~~~~~ 348 (352)
T TIGR01661 338 ------NRVLQVSFKTN 348 (352)
T ss_pred ------CeEEEEEEccC
Confidence 57899999864
No 10
>smart00362 RRM_2 RNA recognition motif.
Probab=98.97 E-value=3.7e-09 Score=73.51 Aligned_cols=65 Identities=26% Similarity=0.430 Sum_probs=58.1
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
||+|+|||..+++++|+++|.. +|....+.+..+. +.+.|||||.|.++++|.++++.++|..|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~-------------~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~ 65 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSK-------------FGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLG 65 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHh-------------cCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEEC
Confidence 6899999999999999999987 6777777777666 678899999999999999999999998885
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.95 E-value=3.4e-09 Score=102.31 Aligned_cols=87 Identities=21% Similarity=0.211 Sum_probs=78.8
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
..|||.|.|||..+|+++|+++|.+ +|.+..+.++.|..++.++|||||.|.+.++|.++++.+||.
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~-------------fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 258 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGK-------------YGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV 258 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHh-------------cCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 4679999999999999999999987 788888999999999999999999999999999999999999
Q ss_pred cccccCCCCCceEEEEeccCcChH
Q 037791 195 KWEVEAPGNKKMCEIACADIQGRD 218 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQGk~ 218 (295)
.+.. ..+.+.|.||.-+++.
T Consensus 259 ~~~g----~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 259 IPEG----GSQPLTVRLAEEHGKA 278 (346)
T ss_pred ccCC----CceeEEEEECCccccc
Confidence 8863 4568999999988764
No 12
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.92 E-value=3.6e-09 Score=77.15 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=57.9
Q ss_pred EEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 119 LMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 119 VMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
|+|+|||...|.++|+++|.. .|....+.+..+.. +...|+|||.|.++++|.++++..+|..|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~-------------~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~ 65 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSR-------------FGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEID 65 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTT-------------SSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CEEeCCCCCCCHHHHHHHHHh-------------cCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEEC
Confidence 789999999999999999987 57788899988876 889999999999999999999999998886
No 13
>smart00360 RRM RNA recognition motif.
Probab=98.92 E-value=5.5e-09 Score=72.21 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=59.2
Q ss_pred EcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 121 IRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 121 IRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
|+|||..+++++|+++|.. +|....+.++.+..++.+.|||||.|.++++|..+++.++|..+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~-------------~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~ 64 (71)
T smart00360 1 VGNLPPDVTEEELRELFSK-------------FGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD 64 (71)
T ss_pred CCCCCcccCHHHHHHHHHh-------------hCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 6899999999999999987 688888999998888999999999999999999999999998874
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.90 E-value=5.4e-09 Score=101.10 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=73.4
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
.+||+|.|||..+|+++|+++|.. +|.+..+.|..|..++.+.|||||.|.+.++|..+++.+||..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~-------------~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~ 252 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEP-------------FGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFE 252 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcE
Confidence 579999999999999999999987 7889999999999999999999999999999999999999987
Q ss_pred ccccCCCCCceEEEEecc
Q 037791 196 WEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAr 213 (295)
+. ++.+.|.||.
T Consensus 253 i~------g~~i~v~~a~ 264 (457)
T TIGR01622 253 LA------GRPIKVGYAQ 264 (457)
T ss_pred EC------CEEEEEEEcc
Confidence 74 5689999986
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.90 E-value=5e-09 Score=104.69 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=71.4
Q ss_pred cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW 196 (295)
Q Consensus 117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w 196 (295)
++|.|+|||.++|+++|.++|.+ +|.+.-+-+..|..|+.++|||||+|.++++|.++++.+|+..+
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~-------------~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i 67 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKP-------------FGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL 67 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 48999999999999999999998 68899999999999999999999999999999999999999877
Q ss_pred cccCCCCCceEEEEecc
Q 037791 197 EVEAPGNKKMCEIACAD 213 (295)
Q Consensus 197 ~~~~~gS~KiceVsyAr 213 (295)
. +|.+.|.|+.
T Consensus 68 ~------gk~i~i~~s~ 78 (562)
T TIGR01628 68 G------GKPIRIMWSQ 78 (562)
T ss_pred C------CeeEEeeccc
Confidence 4 5578888874
No 16
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.88 E-value=1.8e-08 Score=70.41 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=64.2
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
+|+|+|||...+.++|+++|.. .|.+..+++..+..+ ...|+|||.|.++++|..+++.++|..+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~-------------~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~ 66 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSK-------------FGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELG 66 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHh-------------cCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 5899999999999999999987 578888999888766 66899999999999999999999999864
Q ss_pred ccCCCCCceEEEEe
Q 037791 198 VEAPGNKKMCEIAC 211 (295)
Q Consensus 198 ~~~~gS~KiceVsy 211 (295)
++.+.|.|
T Consensus 67 ------~~~~~v~~ 74 (74)
T cd00590 67 ------GRPLRVEF 74 (74)
T ss_pred ------CeEEEEeC
Confidence 44666654
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.87 E-value=9.9e-09 Score=100.41 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=75.5
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..++|.|.|||..+|.++|.++|.. +|.+.-+.|..|..++.+.|||||.|.+.++|..+++.+|
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~-------------~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~ 358 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLES-------------FGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALN 358 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcC
Confidence 355689999999999999999999997 6788888899999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCc
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQ 215 (295)
|..+. ++.+.|.||..+
T Consensus 359 g~~~~------~~~l~v~~a~~~ 375 (509)
T TIGR01642 359 GKDTG------DNKLHVQRACVG 375 (509)
T ss_pred CCEEC------CeEEEEEECccC
Confidence 99985 446899998654
No 18
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.86 E-value=1.4e-08 Score=85.44 Aligned_cols=83 Identities=24% Similarity=0.324 Sum_probs=75.6
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
..||.|.|||.++|+++|.++|.. +|....+.+..|..++...|||||.|.+.++|..+++.++|..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~-------------~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~ 181 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKK-------------FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKE 181 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHh-------------cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCe
Confidence 589999999999999999999998 7888999999999899999999999999999999999999999
Q ss_pred ccccCCCCCceEEEEecc--CcCh
Q 037791 196 WEVEAPGNKKMCEIACAD--IQGR 217 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAr--iQGk 217 (295)
|. ++.+.|.++. .+.+
T Consensus 182 ~~------~~~~~v~~~~~~~~~~ 199 (306)
T COG0724 182 LE------GRPLRVQKAQPASQPR 199 (306)
T ss_pred EC------CceeEeeccccccccc
Confidence 86 5578999976 4444
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.76 E-value=3.3e-08 Score=101.49 Aligned_cols=71 Identities=28% Similarity=0.404 Sum_probs=64.8
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+.-|+|.|.|||..+|+++|+++|.+ +|.+.-+.|.+| .++.|+|||||.|.+.++|.++++.+|
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~-------------~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~ln 120 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEK-------------AGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLN 120 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHh-------------hCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcC
Confidence 445699999999999999999999998 677777899999 789999999999999999999999999
Q ss_pred CCccc
Q 037791 193 KYKWE 197 (295)
Q Consensus 193 G~~w~ 197 (295)
|+.+.
T Consensus 121 g~~i~ 125 (578)
T TIGR01648 121 NYEIR 125 (578)
T ss_pred CCeec
Confidence 98774
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.76 E-value=2.9e-08 Score=99.22 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=73.4
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
..-++|.|+|||..+|+++|+++|.. +|.+..+.+..| .++.+.|||||.|.+.++|.+++..+||
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~-------------~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g 348 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSE-------------CGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHG 348 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHh-------------cCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcC
Confidence 44578999999999999999999998 788999999999 6789999999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccC
Q 037791 194 YKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAri 214 (295)
..+. +|.+.|.||.-
T Consensus 349 ~~~~------gk~l~V~~a~~ 363 (562)
T TIGR01628 349 RMLG------GKPLYVALAQR 363 (562)
T ss_pred CeeC------CceeEEEeccC
Confidence 7764 67899999874
No 21
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.73 E-value=2e-08 Score=92.38 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=78.5
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
+.++-|+|.|-||-+..|-++|..+|+. .|..--+|+|.|-.|+...|||||-|.+..||+++.+++
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFek-------------YG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~dam 75 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEK-------------YGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAM 75 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHH-------------hCcccceecccccccccccceeEEEeeecchHHHHHHhh
Confidence 5788999999999999999999999998 788999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccCcC
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQG 216 (295)
+|..++ .+.+.|..|+.--
T Consensus 76 DG~~ld------gRelrVq~arygr 94 (256)
T KOG4207|consen 76 DGAVLD------GRELRVQMARYGR 94 (256)
T ss_pred cceeec------cceeeehhhhcCC
Confidence 999986 4567787777543
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.71 E-value=5.7e-08 Score=100.37 Aligned_cols=81 Identities=11% Similarity=0.195 Sum_probs=73.8
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...++|.|.|||..++.++|+++|+. +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+||
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~-------------FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg 268 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEA-------------FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNL 268 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhh-------------cCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCC
Confidence 44579999999999999999999997 78999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCceEEEEecc
Q 037791 194 YKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAr 213 (295)
+.|. ++.+.|.+|.
T Consensus 269 ~elg------Gr~LrV~kAi 282 (612)
T TIGR01645 269 FDLG------GQYLRVGKCV 282 (612)
T ss_pred CeeC------CeEEEEEecC
Confidence 9885 5578887765
No 23
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=98.70 E-value=1.4e-08 Score=89.77 Aligned_cols=150 Identities=17% Similarity=0.259 Sum_probs=60.0
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEec--cc-cc-CCcceeeEEEecCCHHHHHHHHH
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLP--MD-FR-RRANLGYAFVNFTTAAGALRFWK 189 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLP--iD-f~-t~~N~GYAFVNF~spedA~~F~~ 189 (295)
..++.|.||+||..+|+++|.+.|+..- ...++|-|.. .+ .. ...-.+.|||+|.+.+++..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l-----------~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~ 73 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWL-----------PDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRD 73 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS-------------SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHH
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhc-----------ccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHH
Confidence 4578999999999999999999777521 2333344443 22 11 23345999999999999999999
Q ss_pred HhcCCcccccCCCCCceEEEEeccCcChHH---HHHHhcccccccCCCCc---cceeeeCC----CCCCCCC----C--c
Q 037791 190 ACNKYKWEVEAPGNKKMCEIACADIQGRDA---LEKHFERFKFYCHTDGY---LPVILSPP----RDGWNYS----K--P 253 (295)
Q Consensus 190 ~fnG~~w~~~~~gS~KiceVsyAriQGk~a---Lv~hFrnS~v~~~~~ey---rP~iF~p~----rdG~~~~----~--~ 253 (295)
.|+|+.|.+.. |..-++.|+||..|.... ....=+.++|-. +++| +-.+=.+. .+. +.. + .
T Consensus 74 ~~~g~~F~D~k-g~~~~~~VE~Apyqk~p~~~k~k~d~r~GTIe~-D~~y~~Fle~L~~~~~~~~~~~-s~~~~l~k~e~ 150 (176)
T PF03467_consen 74 RFDGHVFVDSK-GNEYPAVVEFAPYQKVPKPSKKKKDPREGTIEQ-DPEYQAFLESLEEPEEKPSQDI-SAEKSLEKKEK 150 (176)
T ss_dssp HCTTEEEE-TT-S-EEEEEEEE-SS-------------------------------------------------------
T ss_pred hcCCcEEECCC-CCCcceeEEEcchhcccccccccccccCCCccC-CHHHHHHHHHHhccccccccCc-chhhhhhhhhh
Confidence 99999998876 667799999999988743 233445555554 4554 33432221 111 110 0 0
Q ss_pred e-ecccccCCCCCCCCchhhhhhhc
Q 037791 254 I-IVGKRFDVAAAPPLYFDRKFRSK 277 (295)
Q Consensus 254 ~-~vG~~~~~~f~pp~~~~r~~Rs~ 277 (295)
. -+........||+..|.|.+|+.
T Consensus 151 ~~~~~~~~~~~~TpLie~lk~kk~~ 175 (176)
T PF03467_consen 151 EEKAKEKAEKVTTPLIEYLKEKKAN 175 (176)
T ss_dssp -------------------------
T ss_pred hhhccccccccchHHHHHHHHHhhc
Confidence 0 11112223499999999998875
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.62 E-value=9.9e-08 Score=98.63 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=67.3
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..++|.|.|||..+++++|+++|.. +|.+.-+.++.|..++.++|||||.|.++++|.++++.+|
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~-------------fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~ln 170 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDP-------------FGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMN 170 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHc-------------cCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcC
Confidence 356679999999999999999999997 7889999999999999999999999999999999999999
Q ss_pred CCccc
Q 037791 193 KYKWE 197 (295)
Q Consensus 193 G~~w~ 197 (295)
|+.+.
T Consensus 171 G~~i~ 175 (612)
T TIGR01645 171 GQMLG 175 (612)
T ss_pred CeEEe
Confidence 98875
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.62 E-value=2.9e-07 Score=89.19 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=63.0
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
..||+|.|||..+|+++|+++|.. +|.+..+.|..|..++.+.|||||.|.+.++|.++++ ++|..
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~-------------~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~ 154 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSK-------------VGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQM 154 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCE
Confidence 459999999999999999999998 6789999999999999999999999999999999986 88887
Q ss_pred cc
Q 037791 196 WE 197 (295)
Q Consensus 196 w~ 197 (295)
+.
T Consensus 155 ~~ 156 (457)
T TIGR01622 155 LL 156 (457)
T ss_pred EC
Confidence 75
No 26
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.47 E-value=6.6e-07 Score=84.20 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=66.3
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
.+||.|.|||.+.|+++|+++|.. .|++..+.|+.|-. +.|||||.|.++++|..++. +||..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~-------------~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~ 66 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSF-------------SGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGAT 66 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCe
Confidence 469999999999999999999986 78999999998864 45999999999999999995 99998
Q ss_pred ccccCCCCCceEEEEecc
Q 037791 196 WEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAr 213 (295)
+. ++.+.|.+|.
T Consensus 67 l~------gr~V~Vt~a~ 78 (260)
T PLN03120 67 IV------DQSVTITPAE 78 (260)
T ss_pred eC------CceEEEEecc
Confidence 85 5578998865
No 27
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.46 E-value=6.3e-07 Score=89.10 Aligned_cols=77 Identities=12% Similarity=0.078 Sum_probs=68.0
Q ss_pred CccEEEEcCCCC-ccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 115 ENTTLMIRNIPN-NLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 115 ~RTTVMIRNIPN-k~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
..+||+|+|||. ++|.++|.++|.. +|.+..+.+..|. .|||||.|.++++|..+++.+||
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~-------------yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng 335 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCV-------------YGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNG 335 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCC
Confidence 457999999997 7999999999997 7888888887763 59999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccCc
Q 037791 194 YKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQ 215 (295)
..|. ++.+.|++|+.+
T Consensus 336 ~~l~------g~~l~v~~s~~~ 351 (481)
T TIGR01649 336 VKLF------GKPLRVCPSKQQ 351 (481)
T ss_pred CEEC------CceEEEEEcccc
Confidence 9985 568999999765
No 28
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.46 E-value=5.1e-07 Score=90.17 Aligned_cols=80 Identities=25% Similarity=0.352 Sum_probs=70.3
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
..-+-|.|--||.++.+++|+-++++ .|++-=|-|-||.-++.|+|||||.|++.++|+.+++.+|+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEk-------------iG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn 147 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEK-------------IGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNN 147 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHh-------------ccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhC
Confidence 34578999999999999999999998 57777788999988999999999999999999999999999
Q ss_pred CcccccCCCCCceEEEEe
Q 037791 194 YKWEVEAPGNKKMCEIAC 211 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsy 211 (295)
+.+. +.|.+.|+.
T Consensus 148 ~Eir-----~GK~igvc~ 160 (506)
T KOG0117|consen 148 YEIR-----PGKLLGVCV 160 (506)
T ss_pred cccc-----CCCEeEEEE
Confidence 9987 456555443
No 29
>smart00361 RRM_1 RNA recognition motif.
Probab=98.40 E-value=1.1e-06 Score=65.64 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhchhhhhcccCccCCCccEEE-ecccccC--CcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 130 RRDLLHILDSHCRVEYLKSKWHCKSEFDFLY-LPMDFRR--RANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 130 q~~Ll~ilDe~c~~en~k~~~~~~G~YDFlY-LPiDf~t--~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
+++|++.|.+-|. .+|.+-.++ +.+|..+ +..+|||||.|.+.++|.++++.+||..+.
T Consensus 2 ~~~l~~~~~~~~~---------~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~ 63 (70)
T smart00361 2 DEDFEREFSEEEE---------YFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD 63 (70)
T ss_pred chhHHHHHHHHHH---------hcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 6789999986553 278888887 8888777 888999999999999999999999999885
No 30
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.39 E-value=1.7e-06 Score=86.13 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=64.4
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCC--ccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSE--FDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~--YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
..||.|.|||..+|+++|+++|.+ +|. +..+-+- +-.+ ...|+|||.|.+.++|.+++..+||
T Consensus 394 s~~L~v~NLp~~~tee~L~~lF~~-------------~G~~~i~~ik~~-~~~~-~~~~~gfVeF~~~e~A~~Al~~ln~ 458 (481)
T TIGR01649 394 SATLHLSNIPLSVSEEDLKELFAE-------------NGVHKVKKFKFF-PKDN-ERSKMGLLEWESVEDAVEALIALNH 458 (481)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHh-------------cCCccceEEEEe-cCCC-CcceeEEEEcCCHHHHHHHHHHhcC
Confidence 458999999999999999999998 454 3333221 1122 2579999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccCc
Q 037791 194 YKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQ 215 (295)
+.+..-.+.....+.|+||+.+
T Consensus 459 ~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 459 HQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CccCCCCCCccceEEEEeccCC
Confidence 9997422112237999999764
No 31
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=7.3e-07 Score=89.08 Aligned_cols=102 Identities=20% Similarity=0.326 Sum_probs=77.5
Q ss_pred cccccccCCccCCCCCCcccccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCc
Q 037791 90 KVVGHKRNLKWAPKNRDDVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRA 169 (295)
Q Consensus 90 ~~~~~~r~~~~~p~~~~~~~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~ 169 (295)
+..|+.--..|.-.+.+-. ......=--|.||||+...|++.|+++|++ +|+.+-+--+.|
T Consensus 234 klwgn~~tVdWAep~~e~d-ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~-------------~G~veRVkk~rD----- 294 (506)
T KOG0117|consen 234 KLWGNAITVDWAEPEEEPD-EDTMSKVKVLYVRNLMESTTEETLKKLFNE-------------FGKVERVKKPRD----- 294 (506)
T ss_pred eecCCcceeeccCcccCCC-hhhhhheeeeeeeccchhhhHHHHHHHHHh-------------ccceEEeecccc-----
Confidence 3345555566765543211 011122235899999999999999999998 577888877765
Q ss_pred ceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEeccCcChHH
Q 037791 170 NLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDA 219 (295)
Q Consensus 170 N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyAriQGk~a 219 (295)
||||.|.+.++|.++++.+||+.++. -.++|+.|++|-++.
T Consensus 295 ---YaFVHf~eR~davkAm~~~ngkeldG------~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 295 ---YAFVHFAEREDAVKAMKETNGKELDG------SPIEVTLAKPVDKKK 335 (506)
T ss_pred ---eeEEeecchHHHHHHHHHhcCceecC------ceEEEEecCChhhhc
Confidence 99999999999999999999999973 379999999998753
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.37 E-value=1.5e-06 Score=89.42 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=65.1
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||+|+|||..+|+++|+++|.+.. .|.+.-+-+. .|||||.|.+.++|.++++.+|
T Consensus 230 ~~~~k~LfVgNL~~~~tee~L~~~F~~f~-----------~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~ln 290 (578)
T TIGR01648 230 MAKVKILYVRNLMTTTTEEIIEKSFSEFK-----------PGKVERVKKI--------RDYAFVHFEDREDAVKAMDELN 290 (578)
T ss_pred cccccEEEEeCCCCCCCHHHHHHHHHhcC-----------CCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhC
Confidence 34457899999999999999999999730 1666655332 4799999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. .+.++|+||+...
T Consensus 291 G~~i~------Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 291 GKELE------GSEIEVTLAKPVD 308 (578)
T ss_pred CCEEC------CEEEEEEEccCCC
Confidence 99885 5689999998753
No 33
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.29 E-value=3.8e-06 Score=80.63 Aligned_cols=99 Identities=16% Similarity=0.262 Sum_probs=87.4
Q ss_pred ccCCccCCCCCCcccccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeE
Q 037791 95 KRNLKWAPKNRDDVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYA 174 (295)
Q Consensus 95 ~r~~~~~p~~~~~~~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYA 174 (295)
.+-..|.|.+...+++ |.--||-|-.|+...++..|+..|.. +|.+--+-|..|..|+.++|||
T Consensus 83 ~~l~~wdP~~dp~a~g---DPy~TLFv~RLnydT~EskLrreF~~-------------YG~IkrirlV~d~vTgkskGYA 146 (335)
T KOG0113|consen 83 RRLKLWDPNNDPNAIG---DPYKTLFVARLNYDTSESKLRREFEK-------------YGPIKRIRLVRDKVTGKSKGYA 146 (335)
T ss_pred HHHHhcCCCCCCcccC---CccceeeeeeccccccHHHHHHHHHh-------------cCcceeEEEeeecccCCccceE
Confidence 3456899987665543 88899999999999999999999997 8999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEeccCc
Q 037791 175 FVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 175 FVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyAriQ 215 (295)
||-|.+..+...+|+..+|.+++ ++.|.|.|-+-|
T Consensus 147 FIeye~erdm~~AYK~adG~~Id------grri~VDvERgR 181 (335)
T KOG0113|consen 147 FIEYEHERDMKAAYKDADGIKID------GRRILVDVERGR 181 (335)
T ss_pred EEEeccHHHHHHHHHhccCceec------CcEEEEEecccc
Confidence 99999999999999999999996 567888876543
No 34
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.23 E-value=6.3e-06 Score=80.06 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=69.6
Q ss_pred cccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHH
Q 037791 109 YGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFW 188 (295)
Q Consensus 109 ~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~ 188 (295)
..++.|.--.|.|.|||=+|.+-||+.+|.+ +|++=- +=|=|+.+-++||+||.|.+++||+++.
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~k-------------fG~Vld--VEIIfNERGSKGFGFVTmen~~dadRAR 153 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEK-------------FGKVLD--VEIIFNERGSKGFGFVTMENPADADRAR 153 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHh-------------hCceee--EEEEeccCCCCccceEEecChhhHHHHH
Confidence 3445677778999999999999999999998 454433 3455778889999999999999999999
Q ss_pred HHhcCCcccccCCCCCceEEEEecc
Q 037791 189 KACNKYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 189 ~~fnG~~w~~~~~gS~KiceVsyAr 213 (295)
++|||-..+ +.++||.-|+
T Consensus 154 a~LHgt~VE------GRkIEVn~AT 172 (376)
T KOG0125|consen 154 AELHGTVVE------GRKIEVNNAT 172 (376)
T ss_pred HHhhcceee------ceEEEEeccc
Confidence 999999886 4578887765
No 35
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.11 E-value=1.6e-05 Score=79.69 Aligned_cols=92 Identities=17% Similarity=0.201 Sum_probs=77.7
Q ss_pred cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW 196 (295)
Q Consensus 117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w 196 (295)
-+|.|+|||-.++++.|.++|.+ .|..=-+-|..|..|+...||||+.|++.+++.++++.+||..+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~-------------~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~ 85 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSG-------------VGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF 85 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhc-------------cCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc
Confidence 68999999999999999999997 56677788889999999999999999999999999999999988
Q ss_pred cccCCCCCceEEEEeccCcChHHHHHHhccc
Q 037791 197 EVEAPGNKKMCEIACADIQGRDALEKHFERF 227 (295)
Q Consensus 197 ~~~~~gS~KiceVsyAriQGk~aLv~hFrnS 227 (295)
. ...++|.||.-=--.....-+.++
T Consensus 86 ~------gr~l~v~~~~~~~~~~~~~~~~~~ 110 (435)
T KOG0108|consen 86 N------GRKLRVNYASNRKNAERSLASHNA 110 (435)
T ss_pred C------CceEEeecccccchhHHHHhhccc
Confidence 5 457999998754333444444444
No 36
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.01 E-value=2.8e-05 Score=72.75 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=64.0
Q ss_pred cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW 196 (295)
Q Consensus 117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w 196 (295)
.||.|.||+.+.|+++|+++|.. .|++..++|+.|-.+ .|+|||.|.++++|..++ .+||..+
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~-------------~G~I~~V~I~~D~et---~gfAfVtF~d~~aaetAl-lLnGa~l 68 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSH-------------CGAIEHVEIIRSGEY---ACTAYVTFKDAYALETAV-LLSGATI 68 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHh-------------cCCeEEEEEecCCCc---ceEEEEEECCHHHHHHHH-hcCCCee
Confidence 69999999999999999999996 799999999999544 389999999999998877 8999998
Q ss_pred cccCCCCCceEEEEeccCc
Q 037791 197 EVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 197 ~~~~~gS~KiceVsyAriQ 215 (295)
.. ..|+...|-.+|
T Consensus 69 ~d-----~~I~It~~~~y~ 82 (243)
T PLN03121 69 VD-----QRVCITRWGQYE 82 (243)
T ss_pred CC-----ceEEEEeCcccc
Confidence 63 335554444444
No 37
>PLN03213 repressor of silencing 3; Provisional
Probab=98.01 E-value=2.6e-05 Score=79.45 Aligned_cols=90 Identities=17% Similarity=0.329 Sum_probs=75.1
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCH--HHHHHHHHH
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTA--AGALRFWKA 190 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~sp--edA~~F~~~ 190 (295)
....++|.|-||+...|+++|.++|.+ +|...-++||.+ ++ +|||||+|.+. ..+.+++..
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSe-------------FGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISa 69 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSP-------------MGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFST 69 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHH
Confidence 344689999999999999999999998 789999999933 44 99999999988 789999999
Q ss_pred hcCCcccccCCCCCceEEEEeccCcChHHHHHHhc
Q 037791 191 CNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFE 225 (295)
Q Consensus 191 fnG~~w~~~~~gS~KiceVsyAriQGk~aLv~hFr 225 (295)
+||..|. +..+.|.=|+.--++-|.+-.+
T Consensus 70 LNGAEWK------GR~LKVNKAKP~YLeRLkrERe 98 (759)
T PLN03213 70 YNGCVWK------GGRLRLEKAKEHYLARLKREWE 98 (759)
T ss_pred hcCCeec------CceeEEeeccHHHHHHHHHHHH
Confidence 9999997 3378899898766665554444
No 38
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=2e-05 Score=75.17 Aligned_cols=86 Identities=20% Similarity=0.288 Sum_probs=71.7
Q ss_pred cccccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHH
Q 037791 107 DVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALR 186 (295)
Q Consensus 107 ~~~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~ 186 (295)
++|..+..+.|||++-||++-+|+++|++.|+. +|.+-=+-+ |+. .|||||.|.+.|+|..
T Consensus 155 eV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~-------------fG~I~EVRv---Fk~---qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 155 EVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSP-------------FGPIQEVRV---FKD---QGYAFVRFETKEAAAH 215 (321)
T ss_pred HHhccCCCCCceEEeCCcCccccHHHHHHhccc-------------CCcceEEEE---ecc---cceEEEEecchhhHHH
Confidence 467778899999999999999999999999998 566654443 332 5999999999999999
Q ss_pred HHHHhcCCcccccCCCCCceEEEEeccCcCh
Q 037791 187 FWKACNKYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 187 F~~~fnG~~w~~~~~gS~KiceVsyAriQGk 217 (295)
++-.+||.... .-+...+|.+-++-
T Consensus 216 AIv~mNntei~------G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 216 AIVQMNNTEIG------GQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHhcCceeC------ceEEEEeccccCCC
Confidence 99999999885 44778889887764
No 39
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=97.95 E-value=4.9e-05 Score=72.49 Aligned_cols=102 Identities=16% Similarity=0.229 Sum_probs=86.0
Q ss_pred CCCCCCCcccccccccccCCccCCcccccccCCccCCCCCCcccccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhh
Q 037791 66 VVPPYNNDNVKAKVAVTRPLTMRGKVVGHKRNLKWAPKNRDDVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEY 145 (295)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~r~~~~~p~~~~~~~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en 145 (295)
--.|++.+.+..-+++++|.+.-+ -=-|.|=||-.+-++.-|-++|..
T Consensus 254 rfsP~~~d~m~~l~~~~lp~~~~~--------------------------g~ciFvYNLspd~de~~LWQlFgp------ 301 (360)
T KOG0145|consen 254 RFSPMTIDGMSGLAGVNLPGGPGG--------------------------GWCIFVYNLSPDADESILWQLFGP------ 301 (360)
T ss_pred cCCCccccccceeeeeccCCCCCC--------------------------eeEEEEEecCCCchHhHHHHHhCc------
Confidence 345677777777777777766311 126889999999999999999987
Q ss_pred hcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEec
Q 037791 146 LKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACA 212 (295)
Q Consensus 146 ~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyA 212 (295)
+|...-+-+-.||.|...+||+||.+++-+.|..++..+||+++. +|+++|+|-
T Consensus 302 -------FGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg------~rvLQVsFK 355 (360)
T KOG0145|consen 302 -------FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG------DRVLQVSFK 355 (360)
T ss_pred -------ccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc------ceEEEEEEe
Confidence 788899999999999999999999999999999999999999985 779999984
No 40
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=97.93 E-value=2.7e-05 Score=70.30 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=63.0
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...|.|+|-||+++.+..+|..+|.. +|..--+.+... .-|||||.|.++.||++++..++|
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~-------------yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG 69 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSK-------------YGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDG 69 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHh-------------cCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCC
Confidence 44789999999999999999999987 666666666443 349999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccCcC
Q 037791 194 YKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQG 216 (295)
..+.. + .+.|+..+-+.
T Consensus 70 ~~~cG----~--r~rVE~S~G~~ 86 (195)
T KOG0107|consen 70 KDICG----S--RIRVELSTGRP 86 (195)
T ss_pred ccccC----c--eEEEEeecCCc
Confidence 98862 3 34555555443
No 41
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=97.93 E-value=2.1e-05 Score=71.29 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=71.1
Q ss_pred cCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 111 AMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 111 ~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
+.++.-.||.|-||+.++|++.|-+++-. .|..=-+++|.|..++...|||||.|.+.|+|.=+++.
T Consensus 4 ~~rnqd~tiyvgnld~kvs~~~l~EL~iq-------------agpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAiki 70 (203)
T KOG0131|consen 4 IERNQDATLYVGNLDEKVSEELLYELFIQ-------------AGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKI 70 (203)
T ss_pred cccCCCceEEEecCCHHHHHHHHHHHHHh-------------cCceeeeecchhhhcccccceeEEEEechhhhHHHHHH
Confidence 35667789999999999999999999987 56677799999999999999999999999999999999
Q ss_pred hcCCcccccCCCCCceEEEEecc
Q 037791 191 CNKYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 191 fnG~~w~~~~~gS~KiceVsyAr 213 (295)
||+.++= +|.+.|.=|.
T Consensus 71 ln~VkLY------grpIrv~kas 87 (203)
T KOG0131|consen 71 LNMVKLY------GRPIRVNKAS 87 (203)
T ss_pred HHHHHhc------CceeEEEecc
Confidence 9976653 4455555444
No 42
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=97.92 E-value=4.4e-05 Score=54.03 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=40.1
Q ss_pred CCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEec
Q 037791 153 KSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACA 212 (295)
Q Consensus 153 ~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyA 212 (295)
+|.+.-+.+..+. .|+|||.|.+.++|..+++.+||..|. ++.+.|+||
T Consensus 8 fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~------g~~l~V~~a 56 (56)
T PF13893_consen 8 FGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFN------GRPLKVSYA 56 (56)
T ss_dssp TS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEET------TEEEEEEEE
T ss_pred cccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEC------CcEEEEEEC
Confidence 6777766664332 599999999999999999999999985 568999997
No 43
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=97.91 E-value=3.1e-05 Score=79.41 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=70.6
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
+-.|+|||||=+....+|..+|.. +|.+-=+.+|..+.++.. |||||.|++..+|..+++.|||+.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~-------------~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~ 182 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSN-------------FGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNK 182 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhh-------------cceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCce
Confidence 779999999999999999999997 788888999988887776 999999999999999999999999
Q ss_pred ccccCCCCCceEEEEecc
Q 037791 196 WEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAr 213 (295)
+. +..+.|.||-
T Consensus 183 i~------gR~VAVDWAV 194 (678)
T KOG0127|consen 183 ID------GRPVAVDWAV 194 (678)
T ss_pred ec------CceeEEeeec
Confidence 96 3467889985
No 44
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=3.4e-05 Score=73.64 Aligned_cols=131 Identities=16% Similarity=0.132 Sum_probs=92.7
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhccc-----------------------------------------C-
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSK-----------------------------------------W- 150 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~-----------------------------------------~- 150 (295)
.|.--||.|-||-..+|++-|..+|+.++...++|.+ +
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~a 82 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREA 82 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhccccccCcccCCCCccccceeEEehhcchhcchHHHHHH
Confidence 3444599999999999999999999999887777642 0
Q ss_pred -ccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccccc-------------------------CCCCC
Q 037791 151 -HCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVE-------------------------APGNK 204 (295)
Q Consensus 151 -~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~-------------------------~~gS~ 204 (295)
..+|++.-.-+..|-.|+.++||+||.|.+.++|+.+++.+||+.+..- +..|-
T Consensus 83 F~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp 162 (321)
T KOG0148|consen 83 FAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSP 162 (321)
T ss_pred hccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCC
Confidence 0256666667778889999999999999999999999999999876421 11344
Q ss_pred ceEEEEeccCcC-h--HHHHHHhcc-ccccc----CCCCccceeeeC
Q 037791 205 KMCEIACADIQG-R--DALEKHFER-FKFYC----HTDGYLPVILSP 243 (295)
Q Consensus 205 KiceVsyAriQG-k--~aLv~hFrn-S~v~~----~~~eyrP~iF~p 243 (295)
.-|.|...-|-+ + +.|.++|.. ..|+. .+..|-=|-|.+
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~t 209 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFET 209 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecc
Confidence 456666655433 3 455666654 33332 245566666665
No 45
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.85 E-value=1.8e-05 Score=80.68 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=72.8
Q ss_pred EEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccc
Q 037791 119 LMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEV 198 (295)
Q Consensus 119 VMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~ 198 (295)
|.+.||=-.+|.+||+.+|+. +|+++++-|++|-.|+.+.||+||.|.+.++|..|...+||..+..
T Consensus 281 l~vgnLHfNite~~lr~ifep-------------fg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAG 347 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEP-------------FGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAG 347 (549)
T ss_pred hhhcccccCchHHHHhhhccC-------------cccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecC
Confidence 889999999999999999997 8999999999999999999999999999999999999999976654
Q ss_pred cCCCCCceEEEEeccCcC
Q 037791 199 EAPGNKKMCEIACADIQG 216 (295)
Q Consensus 199 ~~~gS~KiceVsyAriQG 216 (295)
. .-||+.|.+---|.
T Consensus 348 r---~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 348 R---LIKVSVVTERVDTK 362 (549)
T ss_pred c---eEEEEEeeeecccc
Confidence 4 46788887754443
No 46
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=97.83 E-value=6.6e-05 Score=75.26 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=72.6
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
--.+.|--||..+++.||+++|++ +|..+-+-|+.|..|+...||+||.|.+.++|.+++.++|+.+
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~-------------yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~k 100 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEK-------------YGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQK 100 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHH-------------hCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhccc
Confidence 447889999999999999999998 6788999999999999999999999999999999999999975
Q ss_pred ccccCCCCCceEEEEeccC
Q 037791 196 WEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAri 214 (295)
-- +|-.--++|.||.-
T Consensus 101 tl---pG~~~pvqvk~Ad~ 116 (510)
T KOG0144|consen 101 TL---PGMHHPVQVKYADG 116 (510)
T ss_pred cc---CCCCcceeecccch
Confidence 42 24455788888863
No 47
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.72 E-value=0.0001 Score=67.77 Aligned_cols=84 Identities=18% Similarity=0.247 Sum_probs=72.2
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...+-+.|..||.-+-+..++..|.+. .|..--+-|-...+||.++|||||-|.+.+.|.-+.+.|||
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~------------~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNN 114 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQF------------GGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNN 114 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhc------------CCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhh
Confidence 346678999999999999999999873 58888888989999999999999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccCc
Q 037791 194 YKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQ 215 (295)
+.+- ++.+++.|=..-
T Consensus 115 YLl~------e~lL~c~vmppe 130 (214)
T KOG4208|consen 115 YLLM------EHLLECHVMPPE 130 (214)
T ss_pred hhhh------hheeeeEEeCch
Confidence 9874 456676665543
No 48
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.71 E-value=0.00013 Score=71.57 Aligned_cols=55 Identities=13% Similarity=0.194 Sum_probs=47.3
Q ss_pred CCCccEEEeccc---ccCCcceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEecc
Q 037791 153 KSEFDFLYLPMD---FRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 153 ~G~YDFlYLPiD---f~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyAr 213 (295)
+|.+..+.||.+ ..++.++|+|||.|.+.++|..+++.|||..+. ++++.|+|..
T Consensus 443 ~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~------gr~v~~~~~~ 500 (509)
T TIGR01642 443 YGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFN------DRVVVAAFYG 500 (509)
T ss_pred cCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEEC------CeEEEEEEeC
Confidence 788999999875 345677899999999999999999999999984 5678888865
No 49
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00013 Score=71.60 Aligned_cols=66 Identities=23% Similarity=0.230 Sum_probs=58.8
Q ss_pred CccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCc
Q 037791 126 NNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKK 205 (295)
Q Consensus 126 Nk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~K 205 (295)
.+.|..+|.++|.. .|..-.+-|=.|. | ++|||||||.++++|.++++++|...+. +|
T Consensus 8 ~~v~e~~l~~~f~~-------------~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~------~~ 65 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSP-------------AGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLK------GK 65 (369)
T ss_pred CcCChHHHHHHhcc-------------cCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccC------Cc
Confidence 78899999999997 6788888899999 7 9999999999999999999999988774 67
Q ss_pred eEEEEecc
Q 037791 206 MCEIACAD 213 (295)
Q Consensus 206 iceVsyAr 213 (295)
.+.|.|+.
T Consensus 66 ~~rim~s~ 73 (369)
T KOG0123|consen 66 PIRIMWSQ 73 (369)
T ss_pred EEEeehhc
Confidence 88888864
No 50
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.63 E-value=9.7e-05 Score=68.30 Aligned_cols=78 Identities=26% Similarity=0.275 Sum_probs=66.3
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
||+|+||..++--++|+..|-.. ++.|+=+-=-.-+++..-+|=|||.|.+.+.|-.+...++|..+=
T Consensus 11 TlYInnLnekI~~~elkrsL~~L------------FsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy 78 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLL------------FSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY 78 (221)
T ss_pred eEeehhccccccHHHHHHHHHHH------------HHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc
Confidence 99999999999999999966542 555654444455788899999999999999999999999999873
Q ss_pred ccCCCCCceEEEEecc
Q 037791 198 VEAPGNKKMCEIACAD 213 (295)
Q Consensus 198 ~~~~gS~KiceVsyAr 213 (295)
+|...|.||+
T Consensus 79 ------gK~mriqyA~ 88 (221)
T KOG4206|consen 79 ------GKPMRIQYAK 88 (221)
T ss_pred ------Cchhheeccc
Confidence 7899999997
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=97.57 E-value=0.00018 Score=73.97 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=70.6
Q ss_pred ccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHH
Q 037791 110 GAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWK 189 (295)
Q Consensus 110 ~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~ 189 (295)
++..+.--||.|||||-+.|.++|.+.|.. +|+.+|+-|.+|..|+.+.|-|||.|.++.++..-+.
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fsk-------------FG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSK-------------FGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHh-------------hccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 444555669999999999999999999998 8999999999999999999999999999999998888
Q ss_pred Hhc-----C-CcccccCCCCCceEEEEecc
Q 037791 190 ACN-----K-YKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 190 ~fn-----G-~~w~~~~~gS~KiceVsyAr 213 (295)
... | ..+ .+..+.|.-|-
T Consensus 353 ~Aspa~e~g~~ll------~GR~Lkv~~Av 376 (678)
T KOG0127|consen 353 AASPASEDGSVLL------DGRLLKVTLAV 376 (678)
T ss_pred hcCccCCCceEEE------eccEEeeeecc
Confidence 762 2 222 24467777664
No 52
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=97.50 E-value=0.00017 Score=67.37 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=60.3
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
...|.|.|-+||=..+.+.|++.|+. +|++--.-+--|..|+.++||+||.|.|.++|.++.+.-|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeq-------------fGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQ-------------FGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHH-------------hCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC
Confidence 35799999999999999999999998 7888888899999999999999999999999999988543
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=97.44 E-value=0.00018 Score=72.25 Aligned_cols=83 Identities=22% Similarity=0.221 Sum_probs=73.3
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
.|.|+-|+.+.|+.++++||.. +|.+.-+|+-.|.. +.++|||||.|++.+.|..+++.+||..--
T Consensus 126 KLFvg~lsK~~te~evr~iFs~-------------fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tm 191 (510)
T KOG0144|consen 126 KLFVGMLSKQCTENEVREIFSR-------------FGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTM 191 (510)
T ss_pred hhhhhhccccccHHHHHHHHHh-------------hCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceee
Confidence 7899999999999999999998 78888899988876 678899999999999999999999997543
Q ss_pred ccCCCCCceEEEEeccCcCh
Q 037791 198 VEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 198 ~~~~gS~KiceVsyAriQGk 217 (295)
.|+.--+.|.||..|.-
T Consensus 192 ---eGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 192 ---EGCSQPLVVKFADTQKD 208 (510)
T ss_pred ---ccCCCceEEEecccCCC
Confidence 25777899999998863
No 54
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.35 E-value=0.00085 Score=71.24 Aligned_cols=79 Identities=24% Similarity=0.332 Sum_probs=69.9
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
-|||-|.-||.+++|.+|.++|++ +|++..+-| .-|+|-|||.+.+.++|.++.+.|++++
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~fee-------------fGeiqSi~l------i~~R~cAfI~M~~RqdA~kalqkl~n~k 481 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEE-------------FGEIQSIIL------IPPRGCAFIKMVRRQDAEKALQKLSNVK 481 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHh-------------cccceeEee------ccCCceeEEEEeehhHHHHHHHHHhccc
Confidence 589999999999999999999998 677777765 4578999999999999999999999888
Q ss_pred ccccCCCCCceEEEEeccCcChHH
Q 037791 196 WEVEAPGNKKMCEIACADIQGRDA 219 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAriQGk~a 219 (295)
.. +|.+.|.||.-=|..+
T Consensus 482 v~------~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 482 VA------DKTIKIAWAVGKGPKS 499 (894)
T ss_pred cc------ceeeEEeeeccCCcch
Confidence 74 7899999999877654
No 55
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0002 Score=67.04 Aligned_cols=83 Identities=16% Similarity=0.285 Sum_probs=73.2
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
.+-||+|--+-...|+.-|.+.|=. +|.+--+-+|+|..++..+|||||.|...|||..+++-+|+.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIP-------------FGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnes 75 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIP-------------FGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNES 75 (298)
T ss_pred cceeEEeccchHHHHHHHHHhcccc-------------ccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchh
Confidence 3458999999988988888877754 888999999999999999999999999999999999999998
Q ss_pred cccccCCCCCceEEEEeccCcC
Q 037791 195 KWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQG 216 (295)
.+- .+++.|.||++-.
T Consensus 76 EL~------GrtirVN~AkP~k 91 (298)
T KOG0111|consen 76 ELF------GRTIRVNLAKPEK 91 (298)
T ss_pred hhc------ceeEEEeecCCcc
Confidence 873 6799999998643
No 56
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.31 E-value=0.00057 Score=69.01 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=61.1
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
.-++|.|||+|-+||-++|++-|.+ .|..+|. =| -.++..+| -|.|.++++|+++...+||.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre-------------~G~v~ya--di-me~GkskG--VVrF~s~edAEra~a~Mngs 596 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFRE-------------IGHVLYA--DI-MENGKSKG--VVRFFSPEDAERACALMNGS 596 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHh-------------ccceehh--hh-hccCCccc--eEEecCHHHHHHHHHHhccC
Confidence 4578999999999999999999998 4544444 34 45677888 89999999999999999999
Q ss_pred cccccCCCCCceEEEEec
Q 037791 195 KWEVEAPGNKKMCEIACA 212 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyA 212 (295)
+++ ...+.|.|+
T Consensus 597 ~l~------Gr~I~V~y~ 608 (608)
T KOG4212|consen 597 RLD------GRNIKVTYF 608 (608)
T ss_pred ccc------CceeeeeeC
Confidence 986 446788874
No 57
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00028 Score=69.19 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=65.4
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
...-|+++++|.+.+.++++|++.|+. .|+..++-++.|-.++ +.||+||+|.++++|..+++.+|
T Consensus 164 ~~~~t~v~vk~~~~~~~~~~l~~~f~~-------------~g~i~s~~v~~~~~g~-~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 164 KKRFTNVYVKNLEEDSTDEELKDLFSA-------------YGSITSVAVMRDSIGK-SKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred hhhhhhhheeccccccchHHHHHhhcc-------------cCcceEEEEeecCCCC-CCCccceeecChhHHHHHHHhcc
Confidence 344789999999999999999999998 8999999999987766 99999999999999999999999
Q ss_pred CCccc
Q 037791 193 KYKWE 197 (295)
Q Consensus 193 G~~w~ 197 (295)
|....
T Consensus 230 ~~~~~ 234 (369)
T KOG0123|consen 230 GKIFG 234 (369)
T ss_pred CCcCC
Confidence 99886
No 58
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=97.23 E-value=0.00024 Score=70.08 Aligned_cols=75 Identities=16% Similarity=0.370 Sum_probs=61.2
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEec-ccccCC-cceeeEEEecCCHHHHHHHHHHh
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLP-MDFRRR-ANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLP-iDf~t~-~N~GYAFVNF~spedA~~F~~~f 191 (295)
+....|.||++|++++++.|++.|+.. ...+.|.|.. -|+... +-++.|||||..++++..|.+.|
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~------------~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f 72 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPF------------PEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRF 72 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCC------------ccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhC
Confidence 345689999999999999999999983 5667777655 444433 23699999999999999999999
Q ss_pred cCCcccccC
Q 037791 192 NKYKWEVEA 200 (295)
Q Consensus 192 nG~~w~~~~ 200 (295)
+|+.+-...
T Consensus 73 ~g~ifld~K 81 (376)
T KOG1295|consen 73 DGYIFLDNK 81 (376)
T ss_pred CceEEecCC
Confidence 999998655
No 59
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.19 E-value=0.0014 Score=55.35 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=56.2
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..--|.|||||-++|.+++.++|.+ +|.+-=+-+=- +..-.|-|||-+.+..||.++.+.++
T Consensus 15 pevnriLyirNLp~~ITseemydlFGk-------------yg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhls 78 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGK-------------YGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLS 78 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhc-------------ccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhc
Confidence 444557999999999999999999987 55554443322 34456999999999999999999999
Q ss_pred CCcccc
Q 037791 193 KYKWEV 198 (295)
Q Consensus 193 G~~w~~ 198 (295)
|+...+
T Consensus 79 g~n~~~ 84 (124)
T KOG0114|consen 79 GYNVDN 84 (124)
T ss_pred ccccCC
Confidence 998764
No 60
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.15 E-value=0.0022 Score=64.99 Aligned_cols=67 Identities=24% Similarity=0.406 Sum_probs=62.9
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
.|.|.|||-+|.-++|++++.+. .|+..|+-|-+|- ++..+|-|-|.|+++|.++++.+.+|.+.|.
T Consensus 46 ~vfItNIpyd~rWqdLKdLvrek------------vGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~ 112 (608)
T KOG4212|consen 46 SVFITNIPYDYRWQDLKDLVREK------------VGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVN 112 (608)
T ss_pred eEEEecCcchhhhHhHHHHHHHh------------cCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhcccc
Confidence 49999999999999999999985 7999999999996 5788999999999999999999999999996
No 61
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.10 E-value=0.00052 Score=72.04 Aligned_cols=80 Identities=21% Similarity=0.365 Sum_probs=69.4
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
-|.|.|||||-.-+-.+++.||.. +|.+=.+-||.-+.....+|||||.|.++++|..++++|.+-+
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~a-------------FGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STH 679 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTA-------------FGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTH 679 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhc-------------ccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccc
Confidence 589999999999999999999987 7888889999987778889999999999999999999998655
Q ss_pred ccccCCCCCceEEEEeccC
Q 037791 196 WEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAri 214 (295)
+= +..+.++||.-
T Consensus 680 ly------GRrLVLEwA~~ 692 (725)
T KOG0110|consen 680 LY------GRRLVLEWAKS 692 (725)
T ss_pred ee------chhhheehhcc
Confidence 42 33567789874
No 62
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.01 E-value=0.0012 Score=60.70 Aligned_cols=76 Identities=13% Similarity=0.258 Sum_probs=63.2
Q ss_pred cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCc-ceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRA-NLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~-N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
.+|.|-|||.++.+.++.++|-+ +|.+-++-| ++.- ...||||.|.++.||++++..-+|+-
T Consensus 7 ~~iyvGNLP~diRekeieDlFyK-------------yg~i~~ieL----K~r~g~ppfafVeFEd~RDAeDAiygRdGYd 69 (241)
T KOG0105|consen 7 RRIYVGNLPGDIREKEIEDLFYK-------------YGRIREIEL----KNRPGPPPFAFVEFEDPRDAEDAIYGRDGYD 69 (241)
T ss_pred ceEEecCCCcchhhccHHHHHhh-------------hcceEEEEe----ccCCCCCCeeEEEecCccchhhhhhcccccc
Confidence 48999999999999999999987 677776655 4333 36899999999999999999999999
Q ss_pred ccccCCCCCceEEEEeccCc
Q 037791 196 WEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAriQ 215 (295)
++.. .+.|++|+--
T Consensus 70 ydg~------rLRVEfprgg 83 (241)
T KOG0105|consen 70 YDGC------RLRVEFPRGG 83 (241)
T ss_pred cCcc------eEEEEeccCC
Confidence 8743 5788888743
No 63
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=96.96 E-value=0.0015 Score=62.70 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=65.3
Q ss_pred ccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHH
Q 037791 110 GAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWK 189 (295)
Q Consensus 110 ~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~ 189 (295)
+++.|+ .+|.|=+||..+++.+|+++|-. +|.+-.--+=+|-.|..++.|+||.|-++..+..+++
T Consensus 280 reGPeG-CNlFIYHLPQEFgDaEliQmF~P-------------FGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIq 345 (371)
T KOG0146|consen 280 REGPEG-CNLFIYHLPQEFGDAELIQMFLP-------------FGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQ 345 (371)
T ss_pred hcCCCc-ceEEEEeCchhhccHHHHHHhcc-------------ccceeeeeeeehhccccccceeeEecCCchhHHHHHH
Confidence 344444 69999999999999999999987 6667677777899999999999999999999999999
Q ss_pred HhcCCccc
Q 037791 190 ACNKYKWE 197 (295)
Q Consensus 190 ~fnG~~w~ 197 (295)
++||+.+.
T Consensus 346 AMNGFQIG 353 (371)
T KOG0146|consen 346 AMNGFQIG 353 (371)
T ss_pred Hhcchhhh
Confidence 99999885
No 64
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=96.84 E-value=0.0043 Score=54.12 Aligned_cols=81 Identities=11% Similarity=0.234 Sum_probs=71.3
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
+-.-+||.|-||.-..|++.+-++|.. .|.+--+-+=.|-.+.-.-||+||.|-+.++|..+.+-.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~-------------cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryis 99 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSK-------------CGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYIS 99 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHh-------------ccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhc
Confidence 455789999999999999999999997 5777788888888888888999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEec
Q 037791 193 KYKWEVEAPGNKKMCEIACA 212 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyA 212 (295)
|.+++ ++++.|.|-
T Consensus 100 gtrLd------dr~ir~D~D 113 (153)
T KOG0121|consen 100 GTRLD------DRPIRIDWD 113 (153)
T ss_pred cCccc------ccceeeecc
Confidence 99996 557888773
No 65
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=96.55 E-value=0.0093 Score=56.02 Aligned_cols=71 Identities=24% Similarity=0.278 Sum_probs=56.8
Q ss_pred CCCc-cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 113 LGEN-TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 113 ~d~R-TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
.+.+ |+|+|-|+|..++++||+++|.+. +..--+-|=.| .++.+.|-|=|.|...+||+++++.|
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~-------------~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~ 144 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEF-------------GELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKY 144 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHh-------------ccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHh
Confidence 4555 999999999999999999999984 22222222233 35778899999999999999999999
Q ss_pred cCCccc
Q 037791 192 NKYKWE 197 (295)
Q Consensus 192 nG~~w~ 197 (295)
||..++
T Consensus 145 ~gv~ld 150 (243)
T KOG0533|consen 145 NGVALD 150 (243)
T ss_pred cCcccC
Confidence 997765
No 66
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.38 E-value=0.00044 Score=63.12 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=64.7
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
-.=|.|-|||-.+|+.||+-.|.+ +|++--+-|-.|..|+.+.||||.-+.+....+-+++-|||.+
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSq-------------yGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGik 101 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQ-------------YGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIK 101 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeec-------------cCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCce
Confidence 557999999999999999999988 7888889999999999999999999999999999999999998
Q ss_pred cc
Q 037791 196 WE 197 (295)
Q Consensus 196 w~ 197 (295)
.-
T Consensus 102 i~ 103 (219)
T KOG0126|consen 102 IL 103 (219)
T ss_pred ec
Confidence 85
No 67
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=96.13 E-value=0.004 Score=60.28 Aligned_cols=91 Identities=15% Similarity=0.284 Sum_probs=71.9
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
.|-|-|+|.+.+..+|+.+|+..|....+ |-+ +-||||...+..+++++++-+||+++.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlEC----------DIv-----------KNYgFVHiEdktaaedairNLhgYtLh 62 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLEC----------DIV-----------KNYGFVHIEDKTAAEDAIRNLHGYTLH 62 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEee----------eee-----------cccceEEeecccccHHHHhhcccceec
Confidence 46789999999999999999997653321 222 359999999999999999999999985
Q ss_pred ccCCCCCceEEEEeccCcChHHHHHHhcccccccCCCC
Q 037791 198 VEAPGNKKMCEIACADIQGRDALEKHFERFKFYCHTDG 235 (295)
Q Consensus 198 ~~~~gS~KiceVsyAriQGk~aLv~hFrnS~v~~~~~e 235 (295)
++.+.|+-++--.+....-|..|-+..|..+|
T Consensus 63 ------g~nInVeaSksKsk~stkl~vgNis~tctn~E 94 (346)
T KOG0109|consen 63 ------GVNINVEASKSKSKASTKLHVGNISPTCTNQE 94 (346)
T ss_pred ------ceEEEEEeccccCCCccccccCCCCccccCHH
Confidence 56788998877666666667777777776555
No 68
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=96.07 E-value=0.017 Score=51.03 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=72.6
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
-|.|.+|=..-|++++-+.|.. +|++-=+-|-.|-.|+--+|||.|.+.+.+.|..+++.+||..+-
T Consensus 74 Ii~VtgvHeEatEedi~d~F~d-------------yGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll 140 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFAD-------------YGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL 140 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhh-------------cccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh
Confidence 5789999999999999998887 788888999999999999999999999999999999999998875
Q ss_pred ccCCCCCceEEEEeccCcChH
Q 037791 198 VEAPGNKKMCEIACADIQGRD 218 (295)
Q Consensus 198 ~~~~gS~KiceVsyAriQGk~ 218 (295)
. ..++|.|+=+-|.+
T Consensus 141 ~------q~v~VDw~Fv~gp~ 155 (170)
T KOG0130|consen 141 G------QNVSVDWCFVKGPE 155 (170)
T ss_pred C------CceeEEEEEecCCc
Confidence 2 35789998777653
No 69
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.95 E-value=0.068 Score=44.59 Aligned_cols=81 Identities=15% Similarity=0.286 Sum_probs=59.7
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
+|+|-|=-.|+.++-.+++..|.+.+ ...+.-+.+..|.. -|.-=+-|.|.+.++|..|++.|||+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~-----------~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~ 78 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPF-----------REDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKP 78 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcc-----------cccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCc
Confidence 45555557777776665544444432 45566677777654 477788899999999999999999999
Q ss_pred ccccCCCCCceEEEEec
Q 037791 196 WEVEAPGNKKMCEIACA 212 (295)
Q Consensus 196 w~~~~~gS~KiceVsyA 212 (295)
++.+- .-+|.|.|-
T Consensus 79 FnslE---pE~ChvvfV 92 (110)
T PF07576_consen 79 FNSLE---PETCHVVFV 92 (110)
T ss_pred cCCCC---CceeEEEEE
Confidence 98774 458998874
No 70
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=95.91 E-value=0.021 Score=52.17 Aligned_cols=86 Identities=13% Similarity=0.138 Sum_probs=67.1
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
.++.-.++.|.|+-...++..|-++|...+.. ...-.-|+ |..|+...|+|||||.+-+++.+++..+
T Consensus 92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l---------~~~P~i~r---d~~tg~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVL---------ISPPKIMR---DPDTGNPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred cccccccccccccCcchhHHHHHHHHHhcccc---------ccCCcccc---cccCCCCCCCeEEechhHHHHHHHHHHh
Confidence 35555789999999999999999999986532 12222333 3457788899999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccCc
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQ 215 (295)
||+-.. .....|+||.--
T Consensus 160 ngq~l~------nr~itv~ya~k~ 177 (203)
T KOG0131|consen 160 NGQYLC------NRPITVSYAFKK 177 (203)
T ss_pred ccchhc------CCceEEEEEEec
Confidence 999875 336789998643
No 71
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.87 E-value=0.09 Score=49.74 Aligned_cols=88 Identities=22% Similarity=0.299 Sum_probs=69.8
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCC-cceeeEEEecCCHHHHHHHHHHhc
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRR-ANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~-~N~GYAFVNF~spedA~~F~~~fn 192 (295)
+.--||.|--||++..-.+|-.+|.. +.-|.-.-|.+--+.+ ...-.||+.|++.++|+.+...+|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~-------------f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLN 98 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRR-------------FHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALN 98 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhcc-------------CCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhc
Confidence 33448999999999999999999987 4456666676654432 334799999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|.+|+-.. .-++.|+.|+.--|
T Consensus 99 GvrFDpE~---~stLhiElAKSNtK 120 (284)
T KOG1457|consen 99 GVRFDPET---GSTLHIELAKSNTK 120 (284)
T ss_pred Ceeecccc---CceeEeeehhcCcc
Confidence 99999765 44788888875443
No 72
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.81 E-value=0.01 Score=60.84 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=69.8
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+.--.+.|-+||+.+++..++++|++ +|.+--+-|-+|-.++.|.||||-+|+++-....++..+|
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~-------------fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLn 352 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDS-------------FGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLN 352 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHh-------------cccchhheeecccccccccceeeeeeeCCcchhhhhcccc
Confidence 344456678899999999999999998 5666667777888889999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|.+.- +|.+.|..|=.+..
T Consensus 353 Gm~lg------d~~lvvq~A~~g~~ 371 (500)
T KOG0120|consen 353 GMQLG------DKKLVVQRAIVGAS 371 (500)
T ss_pred hhhhc------CceeEeehhhccch
Confidence 99885 45566665544433
No 73
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=95.73 E-value=0.027 Score=53.80 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=56.0
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
.|.--.+-|..+.+.|-..|.. +-.|.---+-.|..|+.+.||+||.|.++.|+.++..++||+--.
T Consensus 192 RIfcgdlgNevnd~vl~raf~K-------------fpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 192 RIFCGDLGNEVNDDVLARAFKK-------------FPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred eeecccccccccHHHHHHHHHh-------------ccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 3444467888999999888887 445555677889999999999999999999999999999998654
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.66 E-value=0.028 Score=59.52 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=61.3
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCc----ceeeEEEecCCHHHHHHHH
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRA----NLGYAFVNFTTAAGALRFW 188 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~----N~GYAFVNF~spedA~~F~ 188 (295)
.+.-|+|.|+|++-.-|+++|...|.. .|.+=.+-++.-.. .+ ++|||||-|.++++|..++
T Consensus 512 ~~~~t~lfvkNlnf~Tt~e~l~~~F~k-------------~G~VlS~~I~kkkd-~~~k~lSmGfgFVEF~~~e~A~~a~ 577 (725)
T KOG0110|consen 512 EETETKLFVKNLNFDTTLEDLEDLFSK-------------QGTVLSIEISKKKD-PANKYLSMGFGFVEFAKPESAQAAL 577 (725)
T ss_pred cccchhhhhhcCCcccchhHHHHHHHh-------------cCeEEEEEEecccc-ccccccccceeEEEecCHHHHHHHH
Confidence 455666999999999999999999986 45554444444322 33 4599999999999999999
Q ss_pred HHhcCCcccccCCCCCceEEEEecc
Q 037791 189 KACNKYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 189 ~~fnG~~w~~~~~gS~KiceVsyAr 213 (295)
+.++|..++.. .++|.++.
T Consensus 578 k~lqgtvldGH------~l~lk~S~ 596 (725)
T KOG0110|consen 578 KALQGTVLDGH------KLELKISE 596 (725)
T ss_pred HHhcCceecCc------eEEEEecc
Confidence 99999998732 34555554
No 75
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=95.47 E-value=0.017 Score=57.65 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=66.1
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
..-..|+|-.|.-.+.+++|+..|+. +|.+-.+.+-.|..|+..+|||||.|.-||+|.-+.+.+||
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~P-------------FGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg 177 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDP-------------FGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNG 177 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccC-------------CCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcc
Confidence 44567889999999999999999997 88999999999999999999999999999999999999999
Q ss_pred Ccccc
Q 037791 194 YKWEV 198 (295)
Q Consensus 194 ~~w~~ 198 (295)
..+..
T Consensus 178 ~mlGG 182 (544)
T KOG0124|consen 178 QMLGG 182 (544)
T ss_pred ccccC
Confidence 98863
No 76
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.32 E-value=0.055 Score=53.47 Aligned_cols=77 Identities=21% Similarity=0.136 Sum_probs=60.8
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
..-|||.|+++=+.+++.+|++-|-. +|++.++-+-. -.|-|||+|++.++|+.+.+..-+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyq-------------yGeirsi~~~~------~~~CAFv~ftTR~aAE~Aae~~~n 286 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQ-------------YGEIRSIRILP------RKGCAFVTFTTREAAEKAAEKSFN 286 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhh-------------cCCeeeEEeec------ccccceeeehhhHHHHHHHHhhcc
Confidence 45789999999889999999999987 67777775432 236899999999999999887555
Q ss_pred CcccccCCCCCceEEEEeccC
Q 037791 194 YKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAri 214 (295)
|-.. .++.+.|.|++.
T Consensus 287 --~lvI---~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 287 --KLVI---NGFRLKIKWGRP 302 (377)
T ss_pred --eeee---cceEEEEEeCCC
Confidence 3333 355788889987
No 77
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.053 Score=54.05 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=63.0
Q ss_pred cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW 196 (295)
Q Consensus 117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w 196 (295)
.-|.|--|-+-.|.++|.-||.. +|.+-.+-+-.|++|+-++-||||.|.+.++.++++-.+++..+
T Consensus 240 NVLFVCKLNPVTtDeDLeiIFSr-------------FG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI 306 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTDEDLEIIFSR-------------FGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI 306 (479)
T ss_pred ceEEEEecCCcccccchhhHHhh-------------cccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee
Confidence 46788888888899999999987 78899999999999999999999999999999999999999887
Q ss_pred cc
Q 037791 197 EV 198 (295)
Q Consensus 197 ~~ 198 (295)
+.
T Consensus 307 DD 308 (479)
T KOG0415|consen 307 DD 308 (479)
T ss_pred cc
Confidence 63
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=94.36 E-value=0.045 Score=50.74 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=84.4
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
-|.|.+||+.-.+.+|.++|.. +|++.-+= .-.||+||.|.+..+|.+++..+||..+.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~-------------yg~~~d~~--------mk~gf~fv~fed~rda~Dav~~l~~~~l~ 61 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKG-------------YGKIPDAD--------MKNGFGFVEFEDPRDADDAVHDLDGKELC 61 (216)
T ss_pred ceeecccCCccchhHHHHHHhh-------------ccccccce--------eecccceeccCchhhhhcccchhcCceec
Confidence 4789999999999999999987 44443221 12389999999999999999999999987
Q ss_pred ccCCCCCceEEEEeccC----cCh----------------------------------HHHHHHhcccccccC---CCCc
Q 037791 198 VEAPGNKKMCEIACADI----QGR----------------------------------DALEKHFERFKFYCH---TDGY 236 (295)
Q Consensus 198 ~~~~gS~KiceVsyAri----QGk----------------------------------~aLv~hFrnS~v~~~---~~ey 236 (295)
. .+ ..|+||+. ||. ..|.+||++.-.+-. ...+
T Consensus 62 ~-----e~-~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~~~ 135 (216)
T KOG0106|consen 62 G-----ER-LVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARRNF 135 (216)
T ss_pred c-----ee-eeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhccc
Confidence 3 22 77888874 211 135666666554321 2456
Q ss_pred cceeeeCCCCCCCCC----CceecccccCCCCCCCCch
Q 037791 237 LPVILSPPRDGWNYS----KPIIVGKRFDVAAAPPLYF 270 (295)
Q Consensus 237 rP~iF~p~rdG~~~~----~~~~vG~~~~~~f~pp~~~ 270 (295)
..+-|+..+|-..+- ...+.|+.+.......+..
T Consensus 136 ~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~~d~~ 173 (216)
T KOG0106|consen 136 AFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNSRDRS 173 (216)
T ss_pred cceeehhhhhhhhcchhccchhhcCceeeecccCcchh
Confidence 677777766666553 3445555555444444433
No 79
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=94.26 E-value=0.084 Score=52.93 Aligned_cols=71 Identities=13% Similarity=0.232 Sum_probs=63.0
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
......|+|-.|=.+++++||+..|+. +|++-++-|..+..++..+||+||.|.+.+.-.+++..+|
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEA-------------FG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEA-------------FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHh-------------hcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 345678999999999999999999998 8999999999999999999999999999998888888877
Q ss_pred CCcc
Q 037791 193 KYKW 196 (295)
Q Consensus 193 G~~w 196 (295)
=+.+
T Consensus 274 lFDL 277 (544)
T KOG0124|consen 274 LFDL 277 (544)
T ss_pred hhhc
Confidence 4433
No 80
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.16 E-value=0.085 Score=55.11 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=59.3
Q ss_pred CccEEEEcCCCCcc--CHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 115 ENTTLMIRNIPNNL--KRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 115 ~RTTVMIRNIPNk~--Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.-+-|.|-|||--= .++.|+.+|.+.- .+ .|+.-=+|+|+|-.++ .+||.|+.|.+..+|..+++.+|
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvf--sk-------~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~ 126 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVF--SK-------AGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLN 126 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHH--Hh-------hccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcc
Confidence 35689999999533 3455665555431 11 6788889999999988 78999999999999999999999
Q ss_pred CCccccc
Q 037791 193 KYKWEVE 199 (295)
Q Consensus 193 G~~w~~~ 199 (295)
|++++..
T Consensus 127 G~~ldkn 133 (698)
T KOG2314|consen 127 GKRLDKN 133 (698)
T ss_pred cceeccc
Confidence 9999854
No 81
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.60 E-value=0.32 Score=49.63 Aligned_cols=81 Identities=22% Similarity=0.313 Sum_probs=64.6
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
-|.|-|=-+|+.+|-.||+..+..++... -|+-.|+ |- --|.--+-|.|.+.++|..||+.|||+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I-----------~~irivR-d~--~pnrymvLIkFr~q~da~~Fy~efNGk~ 139 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQI-----------SDIRIVR-DG--MPNRYMVLIKFRDQADADTFYEEFNGKQ 139 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhh-----------heeEEee-cC--CCceEEEEEEeccchhHHHHHHHcCCCc
Confidence 78888999999999999999999765322 2444555 32 2456678899999999999999999999
Q ss_pred ccccCCCCCceEEEEecc
Q 037791 196 WEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAr 213 (295)
|+..- .-+|.|-|+.
T Consensus 140 Fn~le---~e~Chll~V~ 154 (493)
T KOG0804|consen 140 FNSLE---PEVCHLLYVD 154 (493)
T ss_pred CCCCC---ccceeEEEEE
Confidence 98774 4499988864
No 82
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=93.49 E-value=0.18 Score=53.96 Aligned_cols=90 Identities=14% Similarity=0.139 Sum_probs=67.7
Q ss_pred ccccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHH
Q 037791 108 VYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRF 187 (295)
Q Consensus 108 ~~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F 187 (295)
.++-|--..|+|++-||+.+++..+|+..|..++. ....--||-+.+-....-.--+||-|.+..||++|
T Consensus 166 sfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgP----------lasvKimwpRtEeEk~r~r~cgfvafmnR~D~era 235 (877)
T KOG0151|consen 166 SFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGP----------LASVKIMWPRTEEEKRRERNCGFVAFMNRADAERA 235 (877)
T ss_pred cCCCCCCcccceeeecCCccccHHHHHHHhcccCc----------ccceeeecccchhhhccccccceeeehhhhhHHHH
Confidence 34445556899999999999999999999988653 23344455555555555555789999999999999
Q ss_pred HHHhcCCcccccCCCCCceEEEEecc
Q 037791 188 WKACNKYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 188 ~~~fnG~~w~~~~~gS~KiceVsyAr 213 (295)
.+.++|.-.-.+ ...+.|++
T Consensus 236 ~k~lqg~iv~~~------e~K~gWgk 255 (877)
T KOG0151|consen 236 LKELQGIIVMEY------EMKLGWGK 255 (877)
T ss_pred HHHhcceeeeee------eeeecccc
Confidence 999999887644 35667764
No 83
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=93.35 E-value=0.34 Score=47.06 Aligned_cols=85 Identities=16% Similarity=0.178 Sum_probs=64.2
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
.|.|--|-..-+++|.+.+|.. +|.+|-+-+-... .+.++|-|||.|.++.+|..++..+||.+--
T Consensus 21 klfvgml~kqq~e~dvrrlf~p-------------fG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTm 86 (371)
T KOG0146|consen 21 KLFVGMLNKQQSEDDVRRLFQP-------------FGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTM 86 (371)
T ss_pred hhhhhhhcccccHHHHHHHhcc-------------cCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccC
Confidence 4445555556678999999987 7778877655443 3678899999999999999999999998753
Q ss_pred ccCCCCCceEEEEeccCcChHH
Q 037791 198 VEAPGNKKMCEIACADIQGRDA 219 (295)
Q Consensus 198 ~~~~gS~KiceVsyAriQGk~a 219 (295)
+|.+--+.|.||..-....
T Consensus 87 ---pGASSSLVVK~ADTdkER~ 105 (371)
T KOG0146|consen 87 ---PGASSSLVVKFADTDKERT 105 (371)
T ss_pred ---CCCccceEEEeccchHHHH
Confidence 3445568899998764443
No 84
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.28 E-value=0.37 Score=50.05 Aligned_cols=63 Identities=25% Similarity=0.342 Sum_probs=52.2
Q ss_pred cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW 196 (295)
Q Consensus 117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w 196 (295)
-||||-|+|..++.++|+++|..++.+ .+ +-.|....|-.||-|-|..+|+++.+++++..+
T Consensus 76 ~~L~v~nl~~~Vsn~~L~~~f~~yGei---------r~---------ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~ 137 (549)
T KOG4660|consen 76 GTLVVFNLPRSVSNDTLLRIFGAYGEI---------RE---------IRETPNKRGIVFVEFYDVRDAERALKALNRREI 137 (549)
T ss_pred ceEEEEecCCcCCHHHHHHHHHhhcch---------hh---------hhcccccCceEEEEEeehHhHHHHHHHHHHHHh
Confidence 399999999999999999999986532 11 223555679999999999999999999998877
Q ss_pred c
Q 037791 197 E 197 (295)
Q Consensus 197 ~ 197 (295)
.
T Consensus 138 ~ 138 (549)
T KOG4660|consen 138 A 138 (549)
T ss_pred h
Confidence 5
No 85
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=93.11 E-value=0.13 Score=51.76 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=47.5
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
...++|.|+|||-..+.++|.++|...+ .+-=.++..--..+.+..||||.|.+.+++...+++-
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG-------------~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFG-------------PIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcc-------------cccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 4456799999999999999999999854 3333332221122444499999999999998887764
No 86
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.99 E-value=0.58 Score=49.37 Aligned_cols=88 Identities=19% Similarity=0.200 Sum_probs=67.2
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
-.-|.|+||=.=||...|+++|...|... -+| =||.. +..|||.|.+.++|..-+.++||.+
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~V-----------ee~---WmDkI----KShCyV~yss~eEA~atr~AlhnV~ 505 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNV-----------EEF---WMDKI----KSHCYVSYSSVEEAAATREALHNVQ 505 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCch-----------HHH---HHHHh----hcceeEecccHHHHHHHHHHHhccc
Confidence 34789999999999999999999865311 122 24433 4688999999999999999999999
Q ss_pred ccccCCCCCceEEEEeccCcChHHHHHHhcccc
Q 037791 196 WEVEAPGNKKMCEIACADIQGRDALEKHFERFK 228 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAriQGk~aLv~hFrnS~ 228 (295)
|...+ -|-+.+.|++ .+.|..| +|+.
T Consensus 506 WP~sN---PK~L~adf~~---~deld~h-r~~l 531 (718)
T KOG2416|consen 506 WPPSN---PKHLIADFVR---ADELDKH-RNGL 531 (718)
T ss_pred cCCCC---CceeEeeecc---hhHHHHH-hccc
Confidence 99764 7899999986 3444444 4443
No 87
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=92.26 E-value=0.11 Score=50.55 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=52.2
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
..+|++-|-||-.+.+-++|++.|++.+...++ | --++|+||.|...++|..+++.+||
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviec----------d-----------ivkdy~fvh~d~~eda~~air~l~~ 134 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIEC----------D-----------IVKDYAFVHFDRAEDAVEAIRGLDN 134 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceee----------e-----------eecceeEEEEeeccchHHHHhcccc
Confidence 348999999999999999999999985543332 1 1248999999999999999999888
Q ss_pred Cccc
Q 037791 194 YKWE 197 (295)
Q Consensus 194 ~~w~ 197 (295)
..++
T Consensus 135 ~~~~ 138 (346)
T KOG0109|consen 135 TEFQ 138 (346)
T ss_pred cccc
Confidence 8876
No 88
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=91.90 E-value=0.42 Score=48.47 Aligned_cols=82 Identities=13% Similarity=0.213 Sum_probs=64.6
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
.-..-.|+.+-|||.+.++++|++.|.+.+..- =-|.+.+.|.+ ||.+-+.+.|.|..+.-.+
T Consensus 410 i~PpsatlHlsnip~svsee~lk~~f~~~g~~v-----------kafkff~kd~k------mal~q~~sveeA~~ali~~ 472 (492)
T KOG1190|consen 410 IFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQV-----------KAFKFFQKDRK------MALPQLESVEEAIQALIDL 472 (492)
T ss_pred cCCchhheeeccCCcccchhHHHHhhhcCCceE-----------EeeeecCCCcc------eeecccCChhHhhhhcccc
Confidence 334456999999999999999999999875211 24555566654 9999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccCc
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQ 215 (295)
+++.+. ..-.+.|+|.+.+
T Consensus 473 hnh~lg-----en~hlRvSFSks~ 491 (492)
T KOG1190|consen 473 HNHYLG-----ENHHLRVSFSKST 491 (492)
T ss_pred ccccCC-----CCceEEEEeeccc
Confidence 998875 3448899998754
No 89
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=91.89 E-value=0.85 Score=37.26 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=46.4
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
.|.|+|.|||..-+...+..-|...+ +|+ .|+.=.+ .-|-|.|-|.+++.|.++.+.++|.-
T Consensus 2 ~s~L~V~NLP~~~d~~~I~~RL~qLs--dNC------GGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEd 63 (90)
T PF11608_consen 2 HSLLYVSNLPTNKDPSSIKNRLRQLS--DNC------GGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGED 63 (90)
T ss_dssp SEEEEEES--TTS-HHHHHHHHHHHH--HTT------T--EEE------------TT-EEEEESSHHHHHHHHHHHTT--
T ss_pred ccEEEEecCCCCCCHHHHHHHHHHHh--hcc------CCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccc
Confidence 47899999999998887666655543 233 4554332 12789999999999999999999975
Q ss_pred ccccCCCCCceEEEEeccCcC
Q 037791 196 WEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAriQG 216 (295)
- |. . .+.|+|...+.
T Consensus 64 V--fG---~-kI~v~~~~~~r 78 (90)
T PF11608_consen 64 V--FG---N-KISVSFSPKNR 78 (90)
T ss_dssp S--SS---S---EEESS--S-
T ss_pred c--cc---c-eEEEEEcCCcc
Confidence 3 21 2 46788887654
No 90
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=91.70 E-value=0.6 Score=45.45 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=58.9
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
.+-|.-||..++.++|++.|+. +|...-.=+++|+.+..++||+||-|.+.+++.+.. ...+.
T Consensus 99 kiFvGG~~~~~~e~~~r~yfe~-------------~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~----~~~f~ 161 (311)
T KOG4205|consen 99 KIFVGGLPPDTTEEDFKDYFEQ-------------FGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT----LQKFH 161 (311)
T ss_pred EEEecCcCCCCchHHHhhhhhc-------------cceeEeeEEeecccccccccceeeEeccccccceec----cccee
Confidence 5667799999999999999998 678888899999999999999999999987775432 22222
Q ss_pred ccCCCCCceEEEEecc
Q 037791 198 VEAPGNKKMCEIACAD 213 (295)
Q Consensus 198 ~~~~gS~KiceVsyAr 213 (295)
.+ ..|.|+|-=|.
T Consensus 162 ~~---~gk~vevkrA~ 174 (311)
T KOG4205|consen 162 DF---NGKKVEVKRAI 174 (311)
T ss_pred ee---cCceeeEeecc
Confidence 33 25566666544
No 91
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=91.65 E-value=0.22 Score=47.62 Aligned_cols=67 Identities=22% Similarity=0.242 Sum_probs=56.2
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccC--------Ccceee----EEEecCCHHHHH
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRR--------RANLGY----AFVNFTTAAGAL 185 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t--------~~N~GY----AFVNF~spedA~ 185 (295)
-|+|-|||+.|+-..|++||.. +|..+-+||-..-.+ +.|.++ +.|-|.+...|.
T Consensus 76 VvylS~IPp~m~~~rlReil~~-------------yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK 142 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQ-------------YGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAK 142 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHh-------------ccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHH
Confidence 6899999999999999999996 789999999876444 344433 569999999999
Q ss_pred HHHHHhcCCccc
Q 037791 186 RFWKACNKYKWE 197 (295)
Q Consensus 186 ~F~~~fnG~~w~ 197 (295)
+..+.+||....
T Consensus 143 ~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 143 RIAELLNNTPIG 154 (278)
T ss_pred HHHHHhCCCccC
Confidence 999999987765
No 92
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=90.48 E-value=0.26 Score=47.91 Aligned_cols=71 Identities=20% Similarity=0.197 Sum_probs=59.9
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH----
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA---- 190 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~---- 190 (295)
+.++|-|-.|....|++.|++.+.. +|+.+=+++-.|..++..+||+||+|.+++.+...+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~-------------~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~ 71 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQ-------------FGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHK 71 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcc-------------cCceeeEEEeccCCCCCcccccceecCCCcchheeecccccc
Confidence 5779999999999999999999955 88999999999999999999999999988776655443
Q ss_pred hcCCcccc
Q 037791 191 CNKYKWEV 198 (295)
Q Consensus 191 fnG~~w~~ 198 (295)
++|...+.
T Consensus 72 ~dgr~ve~ 79 (311)
T KOG4205|consen 72 LDGRSVEP 79 (311)
T ss_pred cCCccccc
Confidence 55555543
No 93
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=89.74 E-value=0.81 Score=37.52 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=35.8
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
-|-|.++....+.++|++.|.+ +|.+.|+ ||..+.. -|||-|.++++|..+++.+.-.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~-------------~g~V~yV----D~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQ-------------FGEVAYV----DFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-S-------------S--EEEE----E--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred EEEEecCCCCcCHHHHHHHHHh-------------cCCcceE----EecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 5778889999999999999998 5656664 5655554 5679999999999999877654
No 94
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=89.44 E-value=0.63 Score=43.32 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=63.6
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
+-+.|.|.|+--..|-+.+...|.. .|...-+-++.|..++...|||||-|.+.+.+...++ +||-
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~-------------Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs 165 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFES-------------CGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGS 165 (231)
T ss_pred CCceEEEeccccccccchhhheeec-------------cCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCc
Confidence 3458889998777776665444543 4667667889998887899999999999999999999 9998
Q ss_pred cccccCCCCCceEEEEeccCc
Q 037791 195 KWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQ 215 (295)
.+. ....+|+|.++.
T Consensus 166 ~i~------~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 166 EIP------GPAIEVTLKRTN 180 (231)
T ss_pred ccc------cccceeeeeeee
Confidence 886 346788887765
No 95
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=89.34 E-value=2.3 Score=42.39 Aligned_cols=94 Identities=13% Similarity=0.067 Sum_probs=70.1
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
.....|.|+|.|||..+|-+++.+++...+.+..... -|+. -+-|=.|- .|.-+|=|-|.|.-.+.+.-+++.|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~----t~ep-k~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~il 203 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQ----TGEP-KVKLYRDN-QGKLKGDALCCYIKRESVELAIKIL 203 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCC----CCCe-eEEEEecC-CCCccCceEEEeecccHHHHHHHHh
Confidence 4677899999999999999999999987553221100 1111 11222232 2677899999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccCcCh
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQGk 217 (295)
++..+. ++.+.|+-|++|-+
T Consensus 204 De~~~r------g~~~rVerAkfq~K 223 (382)
T KOG1548|consen 204 DEDELR------GKKLRVERAKFQMK 223 (382)
T ss_pred Cccccc------CcEEEEehhhhhhc
Confidence 999875 55789999999866
No 96
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=85.85 E-value=6 Score=42.19 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=58.6
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
+|-|--|.....-.+|++||...+. .-=.-+..+-.+---..|+||.+.+.++|-+-|..+|.-.+
T Consensus 407 NlWVSGLSstTRAtDLKnlFSKyGK-------------VvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL- 472 (940)
T KOG4661|consen 407 NLWVSGLSSTTRATDLKNLFSKYGK-------------VVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL- 472 (940)
T ss_pred ceeeeccccchhhhHHHHHHHHhcc-------------eeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh-
Confidence 5677778777778899999998543 33334455555666678999999999999999988877665
Q ss_pred ccCCCCCceEEEEecc
Q 037791 198 VEAPGNKKMCEIACAD 213 (295)
Q Consensus 198 ~~~~gS~KiceVsyAr 213 (295)
..+++.|+-|+
T Consensus 473 -----HGrmISVEkaK 483 (940)
T KOG4661|consen 473 -----HGRMISVEKAK 483 (940)
T ss_pred -----cceeeeeeecc
Confidence 46788888776
No 97
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=84.31 E-value=1.2 Score=41.53 Aligned_cols=65 Identities=23% Similarity=0.327 Sum_probs=54.0
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
..-..+.+.+.|++-.+.+.+|.+.|... |.. -|. ..+++.|||-|.+.+++.++++.+
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~-------------g~~--~~~------~~~~~~~~v~Fs~~~da~ra~~~l 153 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPA-------------GEV--TYV------DARRNFAFVEFSEQEDAKRALEKL 153 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhccc-------------CCC--chh------hhhccccceeehhhhhhhhcchhc
Confidence 45667889999999999999999999874 433 222 127899999999999999999999
Q ss_pred cCCccc
Q 037791 192 NKYKWE 197 (295)
Q Consensus 192 nG~~w~ 197 (295)
+|..+.
T Consensus 154 ~~~~~~ 159 (216)
T KOG0106|consen 154 DGKKLN 159 (216)
T ss_pred cchhhc
Confidence 999885
No 98
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=83.61 E-value=4.8 Score=37.77 Aligned_cols=75 Identities=25% Similarity=0.320 Sum_probs=56.7
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
.-++-+-|||...+.++|..++... +.+.=+-|- .. -.|-|||.|.+...+..+.+.++|.+
T Consensus 146 n~ilf~~niP~es~~e~l~~lf~qf-------------~g~keir~i--~~---~~~iAfve~~~d~~a~~a~~~lq~~~ 207 (221)
T KOG4206|consen 146 NNILFLTNIPSESESEMLSDLFEQF-------------PGFKEIRLI--PP---RSGIAFVEFLSDRQASAAQQALQGFK 207 (221)
T ss_pred ceEEEEecCCcchhHHHHHHHHhhC-------------cccceeEec--cC---CCceeEEecchhhhhHHHhhhhccce
Confidence 4578899999999999999999873 333322221 11 13899999999999999999999998
Q ss_pred ccccCCCCCceEEEEecc
Q 037791 196 WEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAr 213 (295)
..- +-...|.||+
T Consensus 208 it~-----~~~m~i~~a~ 220 (221)
T KOG4206|consen 208 ITK-----KNTMQITFAK 220 (221)
T ss_pred ecc-----CceEEecccC
Confidence 863 3377888875
No 99
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=82.21 E-value=3.5 Score=42.69 Aligned_cols=64 Identities=25% Similarity=0.332 Sum_probs=51.3
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
..--.|.||=||=..|.+++.+.|.-.- -.-|=+.|++|...+ .-|=|||-|.+.+.|+.+.+.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~------------Iv~~gi~l~~d~rgR-~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLE------------IVPDGILLPMDQRGR-PTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCc------------ccccceeeeccCCCC-cccceEEEecCHHHHHHHHHH
Confidence 3455899999999999999999997531 112357799999876 779999999999999987653
No 100
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=80.68 E-value=2.1 Score=43.40 Aligned_cols=79 Identities=18% Similarity=0.308 Sum_probs=62.5
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccE--EEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDF--LYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDF--lYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
+--|.+|-||-.-+-+++++.|+++ .-.++| +-+-++-. +..-|=|||.|.+.|+|....+.-+.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdF------------a~~i~f~gVHmv~N~q-GrPSGeAFIqm~nae~a~aaaqk~hk 346 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDF------------ATDIRFQGVHMVLNGQ-GRPSGEAFIQMRNAERARAAAQKCHK 346 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHH------------hhhcccceeEEEEcCC-CCcChhhhhhhhhhHHHHHHHHHHHH
Confidence 5679999999999999999999984 456677 66666543 55669999999999999999888887
Q ss_pred CcccccCCCCCceEEEEecc
Q 037791 194 YKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAr 213 (295)
+... ...|||--+.
T Consensus 347 ~~mk------~RYiEvfp~S 360 (508)
T KOG1365|consen 347 KLMK------SRYIEVFPCS 360 (508)
T ss_pred hhcc------cceEEEeecc
Confidence 7652 3477876554
No 101
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=80.37 E-value=5.1 Score=41.61 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=38.2
Q ss_pred CCCccEEEecccccCC---cceeeEEEecCCHHHHHHHHHHhcCCcccc
Q 037791 153 KSEFDFLYLPMDFRRR---ANLGYAFVNFTTAAGALRFWKACNKYKWEV 198 (295)
Q Consensus 153 ~G~YDFlYLPiDf~t~---~N~GYAFVNF~spedA~~F~~~fnG~~w~~ 198 (295)
+|..+-+-.|.++.+. -..|=-||-|.+.+++++++++|+|.++.+
T Consensus 433 ~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~n 481 (500)
T KOG0120|consen 433 FGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFAN 481 (500)
T ss_pred cCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCC
Confidence 6666777788886543 345899999999999999999999999974
No 102
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=78.88 E-value=5 Score=40.13 Aligned_cols=41 Identities=12% Similarity=0.077 Sum_probs=34.0
Q ss_pred CCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 153 KSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 153 ~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
+|.++-+-| .-+-+-|-+=|+|.+.+.|..-++.|+|..+.
T Consensus 300 ~G~v~~vvv----~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fd 340 (382)
T KOG1548|consen 300 FGQVRKVVV----YDRHPDGVVTVSFRNNEEADQCIQTMDGRWFD 340 (382)
T ss_pred hCCcceEEE----eccCCCceeEEEeCChHHHHHHHHHhcCeeec
Confidence 688887755 12446699999999999999999999999876
No 103
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=78.85 E-value=3 Score=39.78 Aligned_cols=72 Identities=21% Similarity=0.235 Sum_probs=55.3
Q ss_pred ccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHH
Q 037791 110 GAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWK 189 (295)
Q Consensus 110 ~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~ 189 (295)
+.+...-.||.|-||-...++++|+.+|.. +..|. -|.|--+++ +--||+.|.+-+.|-+++.
T Consensus 204 ~~~~~acstlfianl~~~~~ed~l~~~~~~-------------~~gf~--~l~~~~~~g--~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 204 GSGARACSTLFIANLGPNCTEDELKQLLSR-------------YPGFH--ILKIRARGG--MPVAFADFEEIEQATDAMN 266 (284)
T ss_pred cccchhhhhHhhhccCCCCCHHHHHHHHHh-------------CCCce--EEEEecCCC--cceEeecHHHHHHHHHHHH
Confidence 345566789999999999999999999987 33344 455544444 4578999998888888888
Q ss_pred HhcCCcccc
Q 037791 190 ACNKYKWEV 198 (295)
Q Consensus 190 ~fnG~~w~~ 198 (295)
.++|..+..
T Consensus 267 ~lqg~~~s~ 275 (284)
T KOG1457|consen 267 HLQGNLLSS 275 (284)
T ss_pred Hhhcceecc
Confidence 888887753
No 104
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=76.93 E-value=8.7 Score=40.24 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=43.9
Q ss_pred CCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEeccCcCh
Q 037791 153 KSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 153 ~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyAriQGk 217 (295)
+|+.--+|+ |.. +.|..||-|.+.++|..++.++||.+| .+|++...|-+.+-.
T Consensus 477 ~g~v~hi~v--d~n---s~g~VYvrc~s~~~A~~a~~alhgrWF------~gr~Ita~~~~~~~Y 530 (549)
T KOG0147|consen 477 HGKVCHIFV--DKN---SAGCVYVRCPSAEAAGTAVKALHGRWF------AGRMITAKYLPLERY 530 (549)
T ss_pred cCCeeEEEE--ccC---CCceEEEecCcHHHHHHHHHHHhhhhh------ccceeEEEEeehhhh
Confidence 677777776 322 239999999999999999999999877 488999999887654
No 105
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=76.09 E-value=1.9 Score=40.88 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=52.6
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
||.|-|+-.+.|++.|-++|-. .|..=-+-||-|-....- ||||+|.+.-.+.-+++.+||.++.
T Consensus 11 tl~v~n~~~~v~eelL~Elfiq-------------aGPV~kv~ip~~~d~~~k--Fa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 11 TLLVQNMYSGVSEELLSELFIQ-------------AGPVYKVGIPSGQDQEQK--FAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred HHHHHhhhhhhhHHHHHHHhhc-------------cCceEEEeCCCCccCCCc--eeeeecccccchhhhhhhcccchhc
Confidence 7889999999999998888865 455555667777654443 9999999999999999999998765
No 106
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=75.27 E-value=5.2 Score=41.21 Aligned_cols=76 Identities=20% Similarity=0.177 Sum_probs=58.5
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
.+.|-||-...+-.+|..+|..+- ..+.=.|| .--||||||..+..-|.+.++.++|+.=.
T Consensus 3 klyignL~p~~~psdl~svfg~ak----------~~~~g~fl---------~k~gyafvd~pdq~wa~kaie~~sgk~el 63 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAK----------IPGSGQFL---------VKSGYAFVDCPDQQWANKAIETLSGKVEL 63 (584)
T ss_pred cccccccCCCCChHHHHHHhcccc----------CCCCccee---------eecceeeccCCchhhhhhhHHhhchhhhh
Confidence 578899999999999999998742 12333343 22499999999999999999999998754
Q ss_pred ccCCCCCceEEEEeccCcCh
Q 037791 198 VEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 198 ~~~~gS~KiceVsyAriQGk 217 (295)
.+|..+|.+.-.|..
T Consensus 64 -----qGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 64 -----QGKRQEVEHSVPKKQ 78 (584)
T ss_pred -----cCceeeccchhhHHH
Confidence 577889888654433
No 107
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=72.18 E-value=2.8 Score=24.95 Aligned_cols=14 Identities=50% Similarity=0.823 Sum_probs=10.7
Q ss_pred cccCCCCCCCCCCC
Q 037791 9 CSLNPNAQPFKPQP 22 (295)
Q Consensus 9 ~~~~~~~~~~~~~~ 22 (295)
-.|||||+.|-|.-
T Consensus 4 s~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 4 SKLNPNAPEFVPSS 17 (18)
T ss_dssp SSSSTTSSSS-TTT
T ss_pred cccCCCCccccCCC
Confidence 36999999998853
No 108
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=67.78 E-value=13 Score=38.62 Aligned_cols=58 Identities=19% Similarity=0.375 Sum_probs=45.7
Q ss_pred cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
--|.+|-||=..|.++|++.|.. |.++ +|+|.+. ++.+.|=|||-|++.|++..+.+.
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~-~~I~------------~~~~~r~---~Gr~sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSN-CGIE------------NLEIPRR---NGRPSGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhc-Ccee------------EEEEecc---CCCcCcceEEEeechHHHHHHHHh
Confidence 36889999999999999999986 3222 2555543 467789999999999999988763
No 109
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=64.90 E-value=16 Score=32.99 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=34.6
Q ss_pred CCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc--CCcccccCCCCCceEEEEeccCcCh
Q 037791 153 KSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN--KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 153 ~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn--G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
..-..|.||+ +.+..-|+|.+.++|.+..+.++ +..+. ++.|.|.||..+..
T Consensus 20 ~~~~~~~~L~-------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~------g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 20 DPPVQFSPLK-------SFRRIRVVFESPESAQRARQLLHWDGTSFN------GKRLRVYFGQPTPI 73 (184)
T ss_dssp -SS-EEEEET-------TTTEEEEE-SSTTHHHHHHHTST--TSEET------TEE-EEE----SS-
T ss_pred CCceEEEEcC-------CCCEEEEEeCCHHHHHHHHHHhcccccccC------CCceEEEEcccccc
Confidence 3456788885 47899999999999999999988 66553 55799999976655
No 110
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=62.07 E-value=15 Score=37.08 Aligned_cols=85 Identities=11% Similarity=0.249 Sum_probs=61.6
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEE-EecccccCCc-c--eeeE--EEecCCHHHHHH
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFL-YLPMDFRRRA-N--LGYA--FVNFTTAAGALR 186 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFl-YLPiDf~t~~-N--~GYA--FVNF~spedA~~ 186 (295)
.-.+.-|+|--||.++-.++....|..+ +++|.|--+ -+.++.++.. | -|.+ ||.|.+.+||.+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~----------eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAar 180 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRH----------EYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAAR 180 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccch----------hhhhhccceeEEEecccccccccccccceEEEEecchHHHHH
Confidence 3445567788899999999988888764 247777655 3666666522 1 1434 999999999999
Q ss_pred HHHHhcCCcccccCCCCCceEEEEecc
Q 037791 187 FWKACNKYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 187 F~~~fnG~~w~~~~~gS~KiceVsyAr 213 (295)
.+...+|...+ ++++..+|..
T Consensus 181 cIa~vDgs~~D------Gr~lkatYGT 201 (480)
T COG5175 181 CIAEVDGSLLD------GRVLKATYGT 201 (480)
T ss_pred HHHHhcccccc------CceEeeecCc
Confidence 99999998775 5577766643
No 111
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=59.89 E-value=1.7 Score=47.44 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=63.2
Q ss_pred cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW 196 (295)
Q Consensus 117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w 196 (295)
-|+-++|+++++...+|...+.. .+..+++-+.+-..++.-+||||+-|.+++++.+++..-.+.-+
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~-------------~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSP-------------SGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCc-------------cchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 46778999999999999887764 56677776666666677779999999999999998887777665
Q ss_pred cccCCCCCceEEEEeccCcChH
Q 037791 197 EVEAPGNKKMCEIACADIQGRD 218 (295)
Q Consensus 197 ~~~~~gS~KiceVsyAriQGk~ 218 (295)
. +..+-|+=-..||..
T Consensus 735 g------K~~v~i~g~pf~gt~ 750 (881)
T KOG0128|consen 735 G------KISVAISGPPFQGTK 750 (881)
T ss_pred h------hhhhheeCCCCCCch
Confidence 4 223455666789954
No 112
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=59.71 E-value=37 Score=35.00 Aligned_cols=90 Identities=9% Similarity=0.124 Sum_probs=64.5
Q ss_pred cEEEE-cCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 117 TTLMI-RNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 117 TTVMI-RNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
+.|-+ .+-+..+|.+-|-.+|.- +|..- -+-|=++++ --|-|-+.+...|+-+...++|++
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgv-------------YGdVq--RVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~ 359 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGV-------------YGDVQ--RVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHK 359 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhh-------------hcceE--EEEeeecCC---cceeeeecchhHHHHHHHHhhcce
Confidence 44444 455677799998888875 45433 334434433 459999999999999999999999
Q ss_pred ccccCCCCCceEEEEeccCcChH---------HHHHHhcccccc
Q 037791 196 WEVEAPGNKKMCEIACADIQGRD---------ALEKHFERFKFY 230 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAriQGk~---------aLv~hFrnS~v~ 230 (295)
|- +|.+.|+|.+-|... -|-+.|-||.+-
T Consensus 360 l~------gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLh 397 (492)
T KOG1190|consen 360 LY------GKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLH 397 (492)
T ss_pred ec------CceEEEeeccCccccCCCCCCccccccccCCCCchh
Confidence 95 589999999876542 355566666654
No 113
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=57.07 E-value=89 Score=24.26 Aligned_cols=70 Identities=10% Similarity=0.149 Sum_probs=49.2
Q ss_pred EEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 119 LMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 119 VMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
+..|+||..+|.++|.++-...+...++ ...+-|+ .--.....++-|+...=.|.+++.+..+.- |..++
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~------~~~V~w~--~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a-G~p~d 72 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAE------MPGVQWL--RSYVSEDDGKIFCLYEAPDEEAVREHARRA-GLPAD 72 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhh------cCCeEEE--EEEEecCCCeEEEEEECCCHHHHHHHHHHc-CCCcc
Confidence 5678999999999999998876654432 1233333 222233345789999999999998887776 87765
No 114
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=56.35 E-value=52 Score=33.72 Aligned_cols=86 Identities=13% Similarity=0.138 Sum_probs=64.1
Q ss_pred cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW 196 (295)
Q Consensus 117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w 196 (295)
.+|..=|-|-.+|++.|++|++++. ....+++-|=+. +..+ .-+-+.|.+.++|...+-.+|.+..
T Consensus 407 ~vLHffNaP~~vtEe~l~~i~nek~---------v~~~svkvFp~k----serS-ssGllEfe~~s~Aveal~~~NH~pi 472 (494)
T KOG1456|consen 407 NVLHFFNAPLGVTEEQLIGICNEKD---------VPPTSVKVFPLK----SERS-SSGLLEFENKSDAVEALMKLNHYPI 472 (494)
T ss_pred ceeEEecCCCccCHHHHHHHhhhcC---------CCcceEEeeccc----cccc-ccceeeeehHHHHHHHHHHhccccc
Confidence 4778889999999999999999853 224455544332 2211 3456899999999999999999999
Q ss_pred cccCCCCCceEEEEeccCcC
Q 037791 197 EVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 197 ~~~~~gS~KiceVsyAriQG 216 (295)
+.-++.--.|++++|+..|.
T Consensus 473 ~~p~gs~PfilKlcfsts~~ 492 (494)
T KOG1456|consen 473 EGPNGSFPFILKLCFSTSKH 492 (494)
T ss_pred cCCCCCCCeeeeeeeccccc
Confidence 87653345589999988764
No 115
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=56.30 E-value=24 Score=31.71 Aligned_cols=63 Identities=17% Similarity=0.190 Sum_probs=48.9
Q ss_pred ccEEEEcCCCCcc-CHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 116 NTTLMIRNIPNNL-KRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 116 RTTVMIRNIPNk~-Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
-.||.+|=+...+ .++||+.++..... +| ||+..|-|..--|-|-|.|-..|..++.+|+..
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~----------fG-------pI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s~ 148 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSV----------FG-------PIQSVTLCGRQSAVVVFKDITSACKAVSAFQSR 148 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHh----------cC-------CcceeeecCCceEEEEehhhHHHHHHHHhhcCC
Confidence 5699998777666 56677777766432 66 455556788889999999999999999999874
Q ss_pred c
Q 037791 195 K 195 (295)
Q Consensus 195 ~ 195 (295)
.
T Consensus 149 ~ 149 (166)
T PF15023_consen 149 A 149 (166)
T ss_pred C
Confidence 3
No 116
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=52.59 E-value=23 Score=35.03 Aligned_cols=60 Identities=20% Similarity=0.432 Sum_probs=44.5
Q ss_pred cccccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHH
Q 037791 107 DVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGA 184 (295)
Q Consensus 107 ~~~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA 184 (295)
+.-+.+....|-|.+-|+|.++.-.||+..|.+.. -.=|.+.+ +-..|-||..|-+...+
T Consensus 321 ~~~g~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~----------------~~pm~isw--kg~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 321 DQSGVEAGAKTDIKLTNLSRDIRVKDLKSELRKRE----------------CTPMSISW--KGHFGKCFLHFGNRKGV 380 (396)
T ss_pred CCCcccCccccceeeccCccccchHHHHHHHHhcC----------------CCceeEee--ecCCcceeEecCCccCC
Confidence 34555677789999999999999999999998731 12233444 45679999999876544
No 117
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=51.79 E-value=28 Score=35.30 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=53.2
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEec--ccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLP--MDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLP--iDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
...+-.++|-||==-.|++||++.|.+.+. -||+-+- -+-.|+.++|||.|-..+..+..+.++.
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~-------------~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~Mei 143 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGL-------------AQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEI 143 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhH-------------HHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHh
Confidence 445778999999888899999999988542 2332211 1234688999999999999999988887
Q ss_pred hcCCccc
Q 037791 191 CNKYKWE 197 (295)
Q Consensus 191 fnG~~w~ 197 (295)
+--+.+-
T Consensus 144 LP~k~iH 150 (498)
T KOG4849|consen 144 LPTKTIH 150 (498)
T ss_pred cccceec
Confidence 6655553
No 118
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=48.21 E-value=59 Score=23.37 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=34.6
Q ss_pred cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHH
Q 037791 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRF 187 (295)
Q Consensus 117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F 187 (295)
|+|-|.=.|.+..+.. +.-|.+ +|++.-.|++. +.-.+||.|.+..+|+++
T Consensus 2 ~wI~V~Gf~~~~~~~v-l~~F~~-------------fGeI~~~~~~~------~~~~~~l~y~~~~~ae~A 52 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEV-LEHFAS-------------FGEIVDIYVPE------STNWMYLKYKSRKDAEKA 52 (53)
T ss_pred cEEEEEeECchHHHHH-HHHHHh-------------cCCEEEEEcCC------CCcEEEEEECCHHHHHhh
Confidence 4566665555554333 334444 78888888882 234889999999999875
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=47.20 E-value=48 Score=36.40 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=56.0
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
-.-|-|-++|.|-+.+-+|+++.|... .-.-|.+-++..-. +.--|=|-|-|.+++.|.++...+++
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY------------~~~p~sI~~r~nd~-G~pTGe~mvAfes~~eAr~A~~dl~~ 931 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDY------------EPDPNSIRIRRNDD-GVPTGECMVAFESQEEARRASMDLDG 931 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhccc------------ccCCCceeEeecCC-CCcccceeEeecCHHHHHhhhhcccc
Confidence 345688999999999999998888652 23335555555433 56679999999999999999999999
Q ss_pred Cccc
Q 037791 194 YKWE 197 (295)
Q Consensus 194 ~~w~ 197 (295)
+++.
T Consensus 932 ~~i~ 935 (944)
T KOG4307|consen 932 QKIR 935 (944)
T ss_pred Cccc
Confidence 9986
No 120
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=47.18 E-value=1.3e+02 Score=28.32 Aligned_cols=65 Identities=11% Similarity=0.171 Sum_probs=50.3
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
-..-.|||+-||.+=+-++|++-+.+.+ |-+|--.- --|++-|.|+..||..-++..+..
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaG---------------dvCfadv~-----rDg~GvV~~~r~eDMkYAvr~ld~ 172 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAG---------------DVCFADVQ-----RDGVGVVEYLRKEDMKYAVRKLDD 172 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhC---------------Ceeeeeee-----cccceeeeeeehhhHHHHHHhhcc
Confidence 3455899999999999999999988743 22332111 126899999999999999999999
Q ss_pred Ccccc
Q 037791 194 YKWEV 198 (295)
Q Consensus 194 ~~w~~ 198 (295)
.++..
T Consensus 173 ~~~~s 177 (241)
T KOG0105|consen 173 QKFRS 177 (241)
T ss_pred ccccC
Confidence 88874
No 121
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=44.94 E-value=53 Score=33.74 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=51.7
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHH
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWK 189 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~ 189 (295)
+..--|.+|-||-+.+..+.++.|..+|... .|.-+-|++-. -++.--|=|||-|...++|..+..
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~--------~g~egvLFV~r--pdgrpTGdAFvlfa~ee~aq~aL~ 224 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVT--------GGTEGVLFVTR--PDGRPTGDAFVLFACEEDAQFALR 224 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCccc--------CCccceEEEEC--CCCCcccceEEEecCHHHHHHHHH
Confidence 4456788999999999999999999888644 46667777654 124556999999999999987654
No 122
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=41.76 E-value=55 Score=35.02 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=46.0
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHH----
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWK---- 189 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~---- 189 (295)
-.|.-|+||-||+..-.++++.||+. ||+ -+|-.+ .|. .|-+ =||.|.+..||..+++
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~----enc-------Pk~isc----efa--~N~n-WyITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKG----ENC-------PKVISC----EFA--HNDN-WYITFESDTDAQQAYKYLRE 234 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhcc----CCC-------CCceee----eee--ecCc-eEEEeecchhHHHHHHHHHH
Confidence 45888999999999999999999985 232 122111 121 2222 3899999999999886
Q ss_pred ---HhcCCccc
Q 037791 190 ---ACNKYKWE 197 (295)
Q Consensus 190 ---~fnG~~w~ 197 (295)
.|.|+..-
T Consensus 235 evk~fqgKpIm 245 (684)
T KOG2591|consen 235 EVKTFQGKPIM 245 (684)
T ss_pred HHHhhcCcchh
Confidence 46777654
No 123
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=39.30 E-value=70 Score=32.08 Aligned_cols=107 Identities=16% Similarity=0.073 Sum_probs=73.5
Q ss_pred CCccCCCCCCc-ccccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEE
Q 037791 97 NLKWAPKNRDD-VYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAF 175 (295)
Q Consensus 97 ~~~~~p~~~~~-~~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAF 175 (295)
+..|....+.+ .........-||.+=.+|...+..+|.+.|-.....--.|..+ -.--++|. |..|...+|=|=
T Consensus 46 gg~m~~g~~~~~~~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~---kPki~~y~--dkeT~~~KGeat 120 (351)
T KOG1995|consen 46 GGPMSSGNRGDASSMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTG---KPKIKIYT--DKETGAPKGEAT 120 (351)
T ss_pred CCCcCCCCCcCcCccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCC---Ccchhccc--cccccCcCCcee
Confidence 33444444422 2344456678999999999999999999998743211110001 12234565 558999999999
Q ss_pred EecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEeccC
Q 037791 176 VNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 176 VNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyAri 214 (295)
|.|.++..|..++.-|+++.+..+ +++|+.|.-
T Consensus 121 vS~~D~~~akaai~~~agkdf~gn------~ikvs~a~~ 153 (351)
T KOG1995|consen 121 VSYEDPPAAKAAIEWFAGKDFCGN------TIKVSLAER 153 (351)
T ss_pred eeecChhhhhhhhhhhccccccCC------Cchhhhhhh
Confidence 999999999999999999998753 455555543
No 124
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=36.30 E-value=98 Score=25.96 Aligned_cols=59 Identities=27% Similarity=0.353 Sum_probs=34.1
Q ss_pred EEEEcCCCCcc---------CHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCC----HHHH
Q 037791 118 TLMIRNIPNNL---------KRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTT----AAGA 184 (295)
Q Consensus 118 TVMIRNIPNk~---------Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~s----pedA 184 (295)
+++|-|||... +-+.|++.|.+.+ ..+..=+|-+- -+.|+|-|-|.. -.+|
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~-----------p~kv~~l~~~~-----gh~g~aiv~F~~~w~Gf~~A 73 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFN-----------PLKVKPLYGKQ-----GHTGFAIVEFNKDWSGFKNA 73 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH--------------SEEEEEEETT-----EEEEEEEEE--SSHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcC-----------CceeEECcCCC-----CCcEEEEEEECCChHHHHHH
Confidence 68899998766 4456777776643 23333344333 567999999988 4688
Q ss_pred HHHHHHhc
Q 037791 185 LRFWKACN 192 (295)
Q Consensus 185 ~~F~~~fn 192 (295)
.+|.+.|.
T Consensus 74 ~~l~~~F~ 81 (116)
T PF03468_consen 74 MRLEKHFE 81 (116)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888887
No 125
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=33.15 E-value=36 Score=37.96 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=52.6
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccC---CcceeeEEEecCCHHHHHHHH
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRR---RANLGYAFVNFTTAAGALRFW 188 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t---~~N~GYAFVNF~spedA~~F~ 188 (295)
.++++ ||-+-|++.++++.+|...|++++. .+- +|+++ +.-.-||||.|.+-..+.+..
T Consensus 369 ~~atr-TLf~Gnl~~kl~eseiR~af~e~gk-------------ve~----VDiKtP~~~~esa~~f~~~~n~dmtp~ak 430 (975)
T KOG0112|consen 369 FRATR-TLFLGNLDSKLTESEIRPAFDESGK-------------VEE----VDIKTPHIKTESAYAFVSLLNTDMTPSAK 430 (975)
T ss_pred hhhhh-hhhhcCcccchhhhhhhhhhhhhcc-------------ccc----cccccCCCCcccchhhhhhhccccCcccc
Confidence 34445 8999999999999999999999653 221 23333 233469999999999999988
Q ss_pred HHhcCCccccc
Q 037791 189 KACNKYKWEVE 199 (295)
Q Consensus 189 ~~fnG~~w~~~ 199 (295)
....|......
T Consensus 431 ~e~s~~~I~~g 441 (975)
T KOG0112|consen 431 FEESGPLIGNG 441 (975)
T ss_pred hhhcCCccccC
Confidence 88888777644
No 126
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=32.78 E-value=37 Score=32.57 Aligned_cols=64 Identities=22% Similarity=0.329 Sum_probs=51.9
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
...|-.-+.|++..+++++|...+.. .|..--+-+|.+-.++...|||||-|.+...+...+..
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~-------------~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVS-------------SGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred ccccceeecccccccchHHHhhhccC-------------cCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 33445559999999999999955543 56777788999999999999999999998888776554
No 127
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=29.63 E-value=1.6e+02 Score=31.16 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=56.1
Q ss_pred cCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 111 AMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 111 ~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
..+|.|-||-|--+|--++-++|-.|+|.. +|..-++=+=+|.+=+-.+|=|=|.|.+.++=.+++.+
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~l------------yGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDL------------FGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHh------------cCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 357999999999999999999999999974 67766666667766778889999999998876666653
No 128
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=29.29 E-value=22 Score=28.76 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=21.7
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhh
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSH 140 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~ 140 (295)
+.||-|.|||..++++.|++.|+=|
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~LeIh 76 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKLEIH 76 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeEEEE
Confidence 4479999999999999999988754
No 129
>PF15359 CDV3: Carnitine deficiency-associated protein 3
Probab=28.18 E-value=65 Score=27.83 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=11.3
Q ss_pred ccccccCCccCCc
Q 037791 78 KVAVTRPLTMRGK 90 (295)
Q Consensus 78 ~~~~~~p~~~~~~ 90 (295)
..+|||||.+|..
T Consensus 85 ~~gvY~PP~~R~~ 97 (129)
T PF15359_consen 85 TSGVYRPPAARNT 97 (129)
T ss_pred CCceecCcccccc
Confidence 5599999999977
No 130
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=27.06 E-value=1.6e+02 Score=30.48 Aligned_cols=94 Identities=13% Similarity=0.061 Sum_probs=60.0
Q ss_pred ceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEeccCcChHHHHHHhcccccccCCCCccceeeeCC--CCC
Q 037791 170 NLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCHTDGYLPVILSPP--RDG 247 (295)
Q Consensus 170 N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyAriQGk~aLv~hFrnS~v~~~~~eyrP~iF~p~--rdG 247 (295)
..|-.+|=|++.+.+..+++.+....+. ..|.+.-.++.+.++++|+++. ++ .+++... ..|
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~---------~~v~~q~~~~~~~~l~~f~~~~-----~~--~~lv~~gsf~EG 541 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERST---------LPVLTQGEDEREELLEKFKASG-----EG--LILVGGGSFWEG 541 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCcc---------ceeeecCCCcHHHHHHHHHHhc-----CC--eEEEeeccccCc
Confidence 3456789999999999999988766553 2456667778889999999764 11 3334321 112
Q ss_pred CCCCCceecccc-cCCCCCCCCchhhhhhhccc
Q 037791 248 WNYSKPIIVGKR-FDVAAAPPLYFDRKFRSKSK 279 (295)
Q Consensus 248 ~~~~~~~~vG~~-~~~~f~pp~~~~r~~Rs~~~ 279 (295)
-+-......+-. +.-|||.|+++..+.|....
T Consensus 542 VD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~ 574 (654)
T COG1199 542 VDFPGDALRLVVIVGLPFPNPDDPLLKARLEFL 574 (654)
T ss_pred ccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 221111111111 13799999999999887655
No 131
>PF11030 Nucleocapsid-N: Nucleocapsid protein N ; InterPro: IPR020253 This entry represents the nucleocapsid protein from bovine, porcine and equine toroviruses. It is the major structural component of virions associating with the virion genomic RNA.
Probab=26.49 E-value=35 Score=30.04 Aligned_cols=14 Identities=64% Similarity=1.229 Sum_probs=12.3
Q ss_pred ccCCCCCCCCCCCC
Q 037791 10 SLNPNAQPFKPQPK 23 (295)
Q Consensus 10 ~~~~~~~~~~~~~~ 23 (295)
-|||||-||.|+|.
T Consensus 4 mlnpna~p~qp~pq 17 (167)
T PF11030_consen 4 MLNPNAVPFQPSPQ 17 (167)
T ss_pred ccCCCccCCCCCCc
Confidence 48999999999885
No 132
>PF08121 Toxin_33: Waglerin family; InterPro: IPR012637 This family consists of the lethal peptides (waglerins) that are found in the venom of Trimeresurus wagleri (Wagler's pit viper) (Tropidolaemus wagleri). Waglerins are 22-24 residue lethal peptides and are competitive antagonist of the muscle nicotinic receptor (nAChR). Waglerin-1 possesses a distinctive selectivity for the alpha-epsilon interface binding site of the mouse nAChR [].; GO: 0030550 acetylcholine receptor inhibitor activity, 0005576 extracellular region
Probab=25.06 E-value=45 Score=20.55 Aligned_cols=14 Identities=43% Similarity=1.179 Sum_probs=11.2
Q ss_pred ccCCccccCCCCCC
Q 037791 45 SCKPKCFYQPKPPV 58 (295)
Q Consensus 45 ~~~~~~~~~~~~~~ 58 (295)
-|-|-|.|-|.|-|
T Consensus 8 pcyppchyiprpkp 21 (22)
T PF08121_consen 8 PCYPPCHYIPRPKP 21 (22)
T ss_pred cCCCCccccCCCCC
Confidence 58899999888754
No 133
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=24.37 E-value=70 Score=27.44 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=22.5
Q ss_pred CCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 167 RRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 167 t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
-.-.+|+..|-|.+.++|++|.+...|..+.
T Consensus 110 ~~~pMg~~~~aF~~~~~A~~F~~~~GG~v~~ 140 (149)
T PF05573_consen 110 VRGPMGPDLIAFASKEDAEAFAKEHGGKVLT 140 (149)
T ss_dssp SS-TTS--EEEES-HHHHHHHHHHTEEEEEE
T ss_pred cCCCCCCcccccCCHHHHHHHHHHcCCEEee
Confidence 3456789999999999999999999776553
No 134
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=24.18 E-value=2.2e+02 Score=21.76 Aligned_cols=48 Identities=17% Similarity=0.285 Sum_probs=37.9
Q ss_pred cCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 128 LKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 128 ~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
.+-++++..|.. |+|--+..|.. || ||-|.+.++|++=+..-+|..+-
T Consensus 12 ~~v~d~K~~Lr~----------------y~~~~I~~d~t-----Gf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 12 VTVEDFKKRLRK----------------YRWDRIRDDRT-----GF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred ccHHHHHHHHhc----------------CCcceEEecCC-----EE-EEEECChHHHHHHHHhcCCCEEE
Confidence 466788888764 77777777754 66 89999999999999988888764
No 135
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=22.10 E-value=2.7e+02 Score=25.87 Aligned_cols=87 Identities=16% Similarity=0.105 Sum_probs=57.9
Q ss_pred ceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEeccCcChHHHHHHhcccccccCCCCc-cceeeeCCCCCC
Q 037791 170 NLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCHTDGY-LPVILSPPRDGW 248 (295)
Q Consensus 170 N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyAriQGk~aLv~hFrnS~v~~~~~ey-rP~iF~p~rdG~ 248 (295)
..++-=|||.+++.|.++.-..++..+.. +..|...+|..+-.....+ +...|++ .--+.+||..-|
T Consensus 50 sfrrvRi~f~~p~~a~~a~i~~~~~~f~~-----~~~~k~yfaQ~~~~~~~~q-------~L~pP~~eKqFLISPPaSPP 117 (193)
T KOG4019|consen 50 SFRRVRINFSNPEAAADARIKLHSTSFNG-----KNELKLYFAQPGHPESNSQ-------YLQPPEPEKQFLISPPASPP 117 (193)
T ss_pred hhceeEEeccChhHHHHHHHHhhhcccCC-----CceEEEEEccCCCcccccc-------ccCCCChhhceeecCCCCCC
Confidence 35677799999999999999999998862 3289999999887664332 2334443 234566655443
Q ss_pred CCCCceecccccCCCCCCCCchhhhhh
Q 037791 249 NYSKPIIVGKRFDVAAAPPLYFDRKFR 275 (295)
Q Consensus 249 ~~~~~~~vG~~~~~~f~pp~~~~r~~R 275 (295)
||=+.-++.+|-.|++=..+
T Consensus 118 -------vgWe~~eda~P~~n~dLl~~ 137 (193)
T KOG4019|consen 118 -------VGWEPIEDAPPVVNQDLLAA 137 (193)
T ss_pred -------CCCcccccCCccccHHHHHH
Confidence 55554455666666665444
Done!