Query 037791
Match_columns 295
No_of_seqs 177 out of 307
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 06:53:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.6 3.3E-15 1.1E-19 116.6 9.8 82 114-214 17-98 (99)
2 2lkz_A RNA-binding protein 5; 99.5 2.7E-14 9.3E-19 111.7 9.1 86 113-213 6-93 (95)
3 3mdf_A Peptidyl-prolyl CIS-tra 99.5 4.9E-14 1.7E-18 104.1 9.4 82 113-213 4-85 (85)
4 2cpz_A CUG triplet repeat RNA- 99.5 1.4E-13 4.9E-18 107.9 12.4 86 113-217 22-107 (115)
5 2e5h_A Zinc finger CCHC-type a 99.5 1E-13 3.4E-18 104.5 10.0 82 113-213 13-94 (94)
6 1p27_B RNA-binding protein 8A; 99.5 1.2E-13 4E-18 106.5 10.3 85 113-216 20-104 (106)
7 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.2E-13 4.2E-18 102.4 9.8 83 114-215 4-86 (87)
8 1whw_A Hypothetical protein ri 99.5 1.8E-13 6.1E-18 104.3 10.9 86 113-217 5-90 (99)
9 2div_A TRNA selenocysteine ass 99.5 1.5E-13 5.3E-18 104.6 10.2 90 113-217 6-96 (99)
10 3md1_A Nuclear and cytoplasmic 99.5 1.6E-13 5.4E-18 101.0 9.8 80 117-215 2-81 (83)
11 2dnz_A Probable RNA-binding pr 99.5 2.1E-13 7.2E-18 102.9 10.5 83 115-216 4-86 (95)
12 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.9E-13 6.4E-18 104.7 9.9 86 113-217 9-94 (102)
13 2cqc_A Arginine/serine-rich sp 99.5 2.9E-13 9.9E-18 101.9 10.2 83 113-214 12-94 (95)
14 2dnm_A SRP46 splicing factor; 99.5 2.1E-13 7.3E-18 104.8 9.5 86 113-217 10-95 (103)
15 2cq0_A Eukaryotic translation 99.5 2.5E-13 8.6E-18 104.4 9.8 85 113-216 12-96 (103)
16 1p1t_A Cleavage stimulation fa 99.5 4.1E-13 1.4E-17 102.9 11.0 89 115-222 7-95 (104)
17 1x5s_A Cold-inducible RNA-bind 99.5 3.6E-13 1.2E-17 103.1 10.4 85 113-216 9-93 (102)
18 1x5t_A Splicing factor 3B subu 99.5 2.3E-13 7.8E-18 102.9 9.2 84 114-216 3-87 (96)
19 2x1f_A MRNA 3'-END-processing 99.5 3.2E-13 1.1E-17 102.8 10.0 84 116-218 2-85 (96)
20 2do4_A Squamous cell carcinoma 99.5 6.6E-13 2.3E-17 101.5 11.8 84 113-216 14-97 (100)
21 2lxi_A RNA-binding protein 10; 99.5 1.1E-13 3.9E-18 105.9 7.2 82 117-217 2-85 (91)
22 2dgo_A Cytotoxic granule-assoc 99.4 5.7E-13 1.9E-17 104.3 10.7 86 113-217 12-97 (115)
23 3p5t_L Cleavage and polyadenyl 99.4 1.8E-13 6.1E-18 103.5 7.4 82 116-216 1-84 (90)
24 1x5u_A Splicing factor 3B subu 99.4 5E-13 1.7E-17 102.8 10.0 86 113-217 12-97 (105)
25 2d9p_A Polyadenylate-binding p 99.4 4.6E-13 1.6E-17 102.9 9.3 83 113-216 12-94 (103)
26 2kt5_A RNA and export factor-b 99.4 2.3E-12 7.9E-17 102.5 13.6 85 112-216 31-115 (124)
27 3ulh_A THO complex subunit 4; 99.4 7.1E-13 2.4E-17 102.3 10.3 82 112-213 25-106 (107)
28 2dgp_A Bruno-like 4, RNA bindi 99.4 7.5E-13 2.6E-17 102.0 10.4 88 113-216 10-97 (106)
29 1oo0_B CG8781-PA, drosophila Y 99.4 6.5E-13 2.2E-17 103.2 9.9 85 113-216 23-107 (110)
30 2cpf_A RNA binding motif prote 99.4 4.5E-13 1.6E-17 101.8 8.8 84 114-216 3-89 (98)
31 1x4h_A RNA-binding protein 28; 99.4 1.3E-12 4.6E-17 101.1 11.4 85 113-216 12-102 (111)
32 2la6_A RNA-binding protein FUS 99.4 1.4E-12 4.7E-17 99.8 11.2 83 112-213 9-99 (99)
33 2dgs_A DAZ-associated protein 99.4 1E-12 3.5E-17 100.3 10.4 84 113-216 7-90 (99)
34 4a8x_A RNA-binding protein wit 99.4 5.4E-13 1.9E-17 98.8 8.5 81 116-215 4-85 (88)
35 2khc_A Testis-specific RNP-typ 99.4 3.6E-13 1.2E-17 105.8 7.9 82 113-213 37-118 (118)
36 1x5o_A RNA binding motif, sing 99.4 1.7E-12 6E-17 101.3 11.7 89 113-215 22-112 (114)
37 2cph_A RNA binding motif prote 99.4 1.1E-12 3.8E-17 100.9 10.4 85 113-216 12-98 (107)
38 3ex7_B RNA-binding protein 8A; 99.4 8E-13 2.7E-17 105.0 9.8 86 113-217 19-104 (126)
39 2jrs_A RNA-binding protein 39; 99.4 1E-12 3.4E-17 103.5 10.2 85 112-215 22-106 (108)
40 2cpe_A RNA-binding protein EWS 99.4 1E-12 3.6E-17 102.5 10.2 86 113-217 12-105 (113)
41 2ywk_A Putative RNA-binding pr 99.4 9.5E-13 3.2E-17 99.3 9.6 81 113-213 13-93 (95)
42 3s8s_A Histone-lysine N-methyl 99.4 1.2E-12 4E-17 104.2 10.1 82 115-215 5-86 (110)
43 2kxn_B Transformer-2 protein h 99.4 6.6E-13 2.2E-17 108.2 8.8 86 112-216 42-127 (129)
44 2cqd_A RNA-binding region cont 99.4 1.3E-12 4.3E-17 102.7 10.1 84 113-216 14-97 (116)
45 2dgv_A HnRNP M, heterogeneous 99.4 1.3E-12 4.3E-17 98.1 9.6 83 113-216 5-87 (92)
46 2dnh_A Bruno-like 5, RNA bindi 99.4 1.9E-12 6.3E-17 99.6 10.7 86 114-216 13-98 (105)
47 2cqp_A RNA-binding protein 12; 99.4 6.7E-13 2.3E-17 100.9 7.9 84 112-214 11-94 (98)
48 2lea_A Serine/arginine-rich sp 99.4 5.4E-13 1.8E-17 109.3 7.8 86 113-217 44-129 (135)
49 3ns6_A Eukaryotic translation 99.4 6.9E-13 2.4E-17 102.7 8.1 82 115-214 5-92 (100)
50 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1.3E-12 4.4E-17 104.5 9.6 81 113-212 60-140 (140)
51 2fy1_A RNA-binding motif prote 99.4 1.9E-12 6.6E-17 103.1 10.6 84 113-216 4-87 (116)
52 1u6f_A Tcubp1, RNA-binding pro 99.4 2E-12 6.9E-17 104.2 10.4 85 113-216 39-123 (139)
53 2dh8_A DAZ-associated protein 99.4 1.3E-12 4.5E-17 100.6 8.8 84 113-216 13-96 (105)
54 4f25_A Polyadenylate-binding p 99.4 1.8E-12 6.2E-17 102.7 9.6 81 115-216 4-84 (115)
55 2cq3_A RNA-binding protein 9; 99.4 3.2E-12 1.1E-16 98.2 10.4 83 113-216 12-94 (103)
56 2kn4_A Immunoglobulin G-bindin 99.4 2.5E-12 8.7E-17 105.5 10.4 85 113-216 67-151 (158)
57 1h2v_Z 20 kDa nuclear CAP bind 99.4 2.9E-12 9.8E-17 105.7 10.7 85 113-216 36-120 (156)
58 3ucg_A Polyadenylate-binding p 99.4 2.1E-12 7E-17 96.1 8.7 79 116-214 6-84 (89)
59 2cqi_A Nucleolysin TIAR; RNA r 99.4 3.9E-12 1.3E-16 97.7 10.5 83 113-216 12-94 (103)
60 2fc8_A NCL protein; structure 99.4 2.2E-12 7.7E-17 98.7 9.1 82 113-216 12-93 (102)
61 2cpx_A Hypothetical protein FL 99.4 1.4E-12 4.9E-17 101.7 8.1 84 114-216 23-106 (115)
62 2fc9_A NCL protein; structure 99.4 2.4E-12 8.2E-17 98.5 8.8 82 113-217 12-93 (101)
63 2ek1_A RNA-binding protein 12; 99.4 1.4E-12 4.9E-17 98.3 7.4 82 113-213 12-93 (95)
64 2do0_A HnRNP M, heterogeneous 99.4 4.2E-12 1.4E-16 99.0 10.2 84 113-216 12-95 (114)
65 3n9u_C Cleavage and polyadenyl 99.3 2.2E-12 7.6E-17 108.7 9.1 86 114-218 53-140 (156)
66 1x4e_A RNA binding motif, sing 99.3 4.7E-13 1.6E-17 99.3 4.3 71 114-197 3-73 (85)
67 1wi8_A EIF-4B, eukaryotic tran 99.3 3.2E-12 1.1E-16 98.6 9.1 82 114-216 13-95 (104)
68 2dgx_A KIAA0430 protein; RRM d 99.3 4.7E-12 1.6E-16 96.9 9.9 82 113-216 6-91 (96)
69 2dng_A Eukaryotic translation 99.3 3.5E-12 1.2E-16 98.2 9.2 83 113-216 12-94 (103)
70 2dgw_A Probable RNA-binding pr 99.3 7.2E-12 2.4E-16 94.2 10.7 82 113-216 7-88 (91)
71 2m2b_A RNA-binding protein 10; 99.3 2.3E-12 7.7E-17 104.1 8.4 84 113-216 20-109 (131)
72 3s7r_A Heterogeneous nuclear r 99.3 4.6E-12 1.6E-16 94.3 9.3 80 113-212 8-87 (87)
73 2cq4_A RNA binding motif prote 99.3 3.1E-12 1.1E-16 100.1 8.7 82 114-215 23-104 (114)
74 2mss_A Protein (musashi1); RNA 99.3 2.5E-12 8.5E-17 93.3 7.6 75 118-212 1-75 (75)
75 2hgl_A HNRPF protein, heteroge 99.3 2.1E-12 7.3E-17 107.4 8.1 109 80-218 17-128 (136)
76 2dis_A Unnamed protein product 99.3 4E-12 1.4E-16 98.3 9.0 85 114-217 6-94 (109)
77 1fxl_A Paraneoplastic encephal 99.3 6.1E-12 2.1E-16 101.0 10.3 82 116-216 2-83 (167)
78 1x4a_A Splicing factor, argini 99.3 1.2E-11 4E-16 96.1 11.5 82 113-216 19-100 (109)
79 1uaw_A Mouse-musashi-1; RNP-ty 99.3 2E-12 6.9E-17 93.8 6.7 76 117-212 1-76 (77)
80 2ki2_A SS-DNA binding protein 99.3 9.7E-13 3.3E-17 98.6 5.0 81 117-217 2-82 (90)
81 2cqg_A TDP-43, TAR DNA-binding 99.3 9.1E-12 3.1E-16 95.6 10.4 83 113-216 12-94 (103)
82 1x4b_A Heterogeneous nuclear r 99.3 4.6E-12 1.6E-16 99.5 8.8 83 114-216 25-107 (116)
83 2dhg_A TRNA selenocysteine ass 99.3 4.3E-12 1.5E-16 97.4 8.5 85 113-216 6-91 (104)
84 2hvz_A Splicing factor, argini 99.3 4.6E-12 1.6E-16 97.0 8.6 77 117-217 1-77 (101)
85 2f3j_A RNA and export factor b 99.3 1.5E-11 5E-16 105.5 12.5 84 113-216 85-168 (177)
86 3md3_A Nuclear and cytoplasmic 99.3 8.8E-12 3E-16 100.0 10.3 82 113-213 84-165 (166)
87 1rk8_A CG8781-PA, CG8781-PA pr 99.3 5.8E-12 2E-16 105.4 9.5 86 114-218 70-155 (165)
88 1why_A Hypothetical protein ri 99.3 1.3E-11 4.5E-16 94.0 10.7 80 114-216 15-94 (97)
89 1b7f_A Protein (SXL-lethal pro 99.3 7.2E-12 2.5E-16 101.2 9.4 82 116-216 3-84 (168)
90 2err_A Ataxin-2-binding protei 99.3 8.4E-12 2.9E-16 98.0 9.4 83 113-216 26-108 (109)
91 1x4g_A Nucleolysin TIAR; struc 99.3 6.3E-12 2.1E-16 97.9 8.5 82 111-217 20-101 (109)
92 1uw4_A UPF3X; nonsense mediate 99.3 6.9E-12 2.4E-16 99.6 8.8 86 117-216 2-89 (91)
93 2db1_A Heterogeneous nuclear r 99.3 1.3E-11 4.4E-16 98.6 9.7 92 113-225 14-108 (118)
94 1wel_A RNA-binding protein 12; 99.3 5.4E-12 1.9E-16 100.7 7.5 85 113-217 22-106 (124)
95 1fjc_A Nucleolin RBD2, protein 99.3 1.3E-11 4.3E-16 93.5 9.0 81 113-217 13-93 (96)
96 1b7f_A Protein (SXL-lethal pro 99.3 1.7E-11 5.7E-16 99.1 10.2 82 114-212 87-168 (168)
97 2dnq_A RNA-binding protein 4B; 99.3 1.7E-11 5.8E-16 92.2 9.5 78 113-217 5-82 (90)
98 2jwn_A Embryonic polyadenylate 99.3 8.9E-12 3.1E-16 98.6 8.3 82 115-216 35-116 (124)
99 1fxl_A Paraneoplastic encephal 99.3 1.7E-11 6E-16 98.3 10.0 82 114-212 86-167 (167)
100 1nu4_A U1A RNA binding domain; 99.3 8.6E-12 2.9E-16 94.4 7.6 84 113-218 5-92 (97)
101 2cpj_A Non-POU domain-containi 99.3 2.3E-11 7.9E-16 93.0 10.0 79 113-216 12-90 (99)
102 2cpy_A RNA-binding protein 12; 99.3 9.5E-12 3.2E-16 98.2 7.9 83 113-216 12-95 (114)
103 1fj7_A Nucleolin RBD1, protein 99.3 6.9E-12 2.4E-16 96.0 6.8 83 113-216 14-96 (101)
104 1iqt_A AUF1, heterogeneous nuc 99.3 5.9E-12 2E-16 91.1 6.1 75 118-212 1-75 (75)
105 2la4_A Nuclear and cytoplasmic 99.3 1.3E-11 4.5E-16 94.4 8.2 78 113-215 24-101 (101)
106 3lqv_A PRE-mRNA branch site pr 99.3 2.2E-11 7.4E-16 95.2 9.6 80 113-214 5-84 (115)
107 2e5j_A Methenyltetrahydrofolat 99.3 3E-11 1E-15 92.2 10.1 80 113-216 16-95 (97)
108 2qfj_A FBP-interacting repress 99.3 2.4E-11 8.3E-16 102.1 10.3 83 114-215 123-205 (216)
109 2cpi_A CCR4-NOT transcription 99.3 7.9E-12 2.7E-16 98.2 6.7 85 113-216 12-102 (111)
110 2g4b_A Splicing factor U2AF 65 99.2 1.9E-11 6.4E-16 99.4 8.7 81 114-213 92-172 (172)
111 3q2s_C Cleavage and polyadenyl 99.2 1.1E-11 3.6E-16 110.3 7.8 86 115-219 67-154 (229)
112 2cqh_A IGF-II mRNA-binding pro 99.2 2.2E-11 7.5E-16 91.9 8.4 78 113-216 5-84 (93)
113 3nmr_A Cugbp ELAV-like family 99.2 3.5E-11 1.2E-15 97.5 10.0 85 115-215 2-88 (175)
114 2cpd_A Apobec-1 stimulating pr 99.2 6E-11 2E-15 90.6 10.4 80 113-217 12-91 (99)
115 2rs2_A Musashi-1, RNA-binding 99.2 2.3E-11 7.7E-16 95.7 8.2 85 112-216 21-105 (109)
116 2jvo_A Nucleolar protein 3; nu 99.2 3.8E-11 1.3E-15 94.6 9.3 78 113-217 28-105 (108)
117 2dgu_A Heterogeneous nuclear r 99.2 4.1E-11 1.4E-15 92.4 9.3 78 113-217 8-85 (103)
118 2yh0_A Splicing factor U2AF 65 99.2 4E-11 1.4E-15 99.6 9.9 86 113-217 111-196 (198)
119 2nlw_A Eukaryotic translation 99.2 3.3E-11 1.1E-15 93.8 8.7 80 113-213 12-98 (105)
120 1x4c_A Splicing factor, argini 99.2 5.3E-11 1.8E-15 92.8 9.9 81 114-215 13-93 (108)
121 2lmi_A GRSF-1, G-rich sequence 99.2 1.3E-11 4.4E-16 96.4 6.2 94 112-223 7-100 (107)
122 2dgt_A RNA-binding protein 30; 99.2 9.4E-11 3.2E-15 88.4 10.7 77 113-216 7-83 (92)
123 3nmr_A Cugbp ELAV-like family 99.2 5.9E-11 2E-15 96.1 10.1 82 114-212 93-174 (175)
124 1whx_A Hypothetical protein ri 99.2 3.5E-11 1.2E-15 95.1 8.4 75 115-214 9-83 (111)
125 1wg5_A Heterogeneous nuclear r 99.2 3.5E-11 1.2E-15 93.5 8.3 83 113-216 12-95 (104)
126 2ytc_A PRE-mRNA-splicing facto 99.2 3.8E-11 1.3E-15 88.7 8.0 76 113-213 9-85 (85)
127 2j76_E EIF-4B, EIF4B, eukaryot 99.2 1E-11 3.6E-16 95.7 5.2 83 112-215 15-98 (100)
128 2lcw_A RNA-binding protein FUS 98.8 1.3E-12 4.5E-17 102.8 0.0 85 113-216 4-96 (116)
129 2qfj_A FBP-interacting repress 99.2 4.3E-11 1.5E-15 100.6 9.1 84 114-216 26-109 (216)
130 3egn_A RNA-binding protein 40; 99.2 1.7E-11 5.9E-16 99.6 6.3 84 114-216 43-131 (143)
131 1wg1_A KIAA1579 protein, homol 99.2 5.3E-11 1.8E-15 89.5 8.1 76 115-216 4-79 (88)
132 1sjq_A Polypyrimidine tract-bi 99.2 3.7E-11 1.3E-15 96.8 7.3 81 113-218 13-95 (105)
133 1s79_A Lupus LA protein; RRM, 99.2 4.5E-11 1.5E-15 94.2 7.5 77 116-213 11-87 (103)
134 2xnq_A Nuclear polyadenylated 99.2 1.1E-10 3.9E-15 89.9 9.6 77 113-216 19-96 (97)
135 4f02_A Polyadenylate-binding p 99.2 1E-10 3.5E-15 100.7 10.3 83 115-216 14-96 (213)
136 2i2y_A Fusion protein consists 99.2 8.5E-11 2.9E-15 96.2 9.2 81 112-216 69-149 (150)
137 2jvr_A Nucleolar protein 3; RN 99.2 8.9E-11 3.1E-15 94.5 9.1 80 112-214 24-104 (111)
138 2cjk_A Nuclear polyadenylated 99.2 7.8E-11 2.7E-15 95.3 8.7 81 114-214 85-165 (167)
139 2dha_A FLJ20171 protein; RRM d 99.2 5.7E-11 2E-15 97.2 7.8 98 114-228 21-118 (123)
140 1l3k_A Heterogeneous nuclear r 99.2 1.1E-10 3.9E-15 96.6 9.4 83 113-215 10-92 (196)
141 1l3k_A Heterogeneous nuclear r 99.2 8.7E-11 3E-15 97.3 8.7 83 114-216 102-184 (196)
142 2cq1_A PTB-like protein L; RRM 99.2 7.9E-11 2.7E-15 93.1 8.0 82 113-217 12-93 (101)
143 1wf1_A RNA-binding protein RAL 99.2 3E-10 1E-14 88.5 11.1 75 115-216 26-101 (110)
144 2l08_A Regulator of nonsense t 99.1 3.1E-11 1.1E-15 97.2 5.5 86 117-216 10-97 (97)
145 2xs2_A Deleted in azoospermia- 99.1 4.2E-11 1.4E-15 91.8 5.9 80 113-214 6-85 (102)
146 2dnp_A RNA-binding protein 14; 99.1 1.7E-10 6E-15 86.6 9.2 77 113-216 6-82 (90)
147 2ad9_A Polypyrimidine tract-bi 99.1 2.1E-10 7E-15 94.1 10.0 82 113-217 28-109 (119)
148 2kvi_A Nuclear polyadenylated 99.1 1.4E-10 4.6E-15 88.6 8.1 78 113-217 7-85 (96)
149 1wex_A Hypothetical protein (r 99.1 1.9E-10 6.5E-15 91.2 9.1 80 115-217 14-93 (104)
150 1wez_A HnRNP H', FTP-3, hetero 99.1 1.4E-10 4.7E-15 90.7 8.0 82 113-216 12-93 (102)
151 2a3j_A U1 small nuclear ribonu 99.1 2.5E-10 8.4E-15 93.8 9.6 81 115-217 28-112 (127)
152 2krb_A Eukaryotic translation 99.1 1.1E-10 3.8E-15 86.3 6.7 66 117-197 2-73 (81)
153 3d2w_A TAR DNA-binding protein 99.1 2.7E-10 9.2E-15 86.9 8.5 78 113-216 8-85 (89)
154 2bz2_A Negative elongation fac 99.1 3E-10 1E-14 91.7 9.1 99 83-217 15-113 (121)
155 3md3_A Nuclear and cytoplasmic 99.1 2.6E-10 8.9E-15 91.3 8.7 78 118-215 2-79 (166)
156 2cq2_A Hypothetical protein LO 99.1 1.5E-10 5.2E-15 94.6 7.1 80 113-213 22-104 (114)
157 3pgw_S U1-70K; protein-RNA com 99.1 4.1E-10 1.4E-14 109.2 10.9 85 113-216 99-183 (437)
158 2dnn_A RNA-binding protein 12; 99.1 4.8E-10 1.6E-14 89.7 8.9 79 114-214 14-92 (109)
159 1x4d_A Matrin 3; structural ge 99.1 3E-10 1E-14 90.4 7.6 79 113-214 12-91 (102)
160 3r27_A HnRNP L, heterogeneous 99.1 7.1E-10 2.4E-14 88.7 9.6 79 115-216 20-98 (100)
161 4f02_A Polyadenylate-binding p 99.1 4.4E-10 1.5E-14 96.7 8.9 80 115-215 102-181 (213)
162 1x5p_A Negative elongation fac 99.1 8.6E-10 2.9E-14 84.0 9.4 78 113-217 12-89 (97)
163 2dnl_A Cytoplasmic polyadenyla 99.0 7.8E-10 2.7E-14 87.1 9.3 69 114-196 6-80 (114)
164 2e44_A Insulin-like growth fac 99.0 1.1E-09 3.6E-14 82.8 9.3 79 114-215 13-92 (96)
165 1fje_B Nucleolin RBD12, protei 99.0 6.2E-10 2.1E-14 91.1 8.2 77 114-214 97-173 (175)
166 3beg_B Splicing factor, argini 99.0 4.6E-10 1.6E-14 89.0 7.0 64 115-198 15-78 (115)
167 3smz_A Protein raver-1, ribonu 99.0 1.1E-09 3.8E-14 96.8 10.1 92 113-224 181-275 (284)
168 1wf0_A TDP-43, TAR DNA-binding 99.0 9.7E-10 3.3E-14 82.2 8.1 76 115-216 4-79 (88)
169 2cjk_A Nuclear polyadenylated 99.0 4.8E-10 1.6E-14 90.6 6.6 62 116-190 3-64 (167)
170 1x4f_A Matrin 3; structural ge 99.0 7.8E-10 2.7E-14 89.8 7.7 80 112-214 21-101 (112)
171 3smz_A Protein raver-1, ribonu 99.0 1.3E-09 4.4E-14 96.4 9.7 81 116-215 95-175 (284)
172 2ghp_A U4/U6 snRNA-associated 99.0 8.1E-10 2.8E-14 98.1 8.4 82 113-214 207-290 (292)
173 1fje_B Nucleolin RBD12, protei 99.0 5.8E-10 2E-14 91.2 6.6 82 113-215 10-91 (175)
174 3pgw_A U1-A; protein-RNA compl 99.0 6.6E-09 2.2E-13 91.8 13.7 78 113-213 204-281 (282)
175 2hgn_A Heterogeneous nuclear r 99.0 3.3E-10 1.1E-14 94.6 4.7 82 113-216 43-124 (139)
176 1qm9_A Polypyrimidine tract-bi 99.0 1.4E-09 4.8E-14 91.1 8.4 77 116-216 3-80 (198)
177 3tyt_A Heterogeneous nuclear r 99.0 1.7E-09 6E-14 94.1 9.2 77 116-216 4-81 (205)
178 3pgw_A U1-A; protein-RNA compl 98.9 3.1E-09 1.1E-13 93.8 10.3 82 113-216 6-91 (282)
179 2wbr_A GW182, gawky, LD47780P; 98.9 1.8E-09 6.2E-14 85.5 7.7 72 116-212 7-78 (89)
180 2adc_A Polypyrimidine tract-bi 98.9 2.4E-09 8.1E-14 93.1 9.2 79 113-215 31-110 (229)
181 2hzc_A Splicing factor U2AF 65 98.9 2.1E-09 7.3E-14 79.4 7.4 74 115-197 5-78 (87)
182 3sde_A Paraspeckle component 1 98.9 2.5E-09 8.4E-14 94.9 9.1 84 116-215 96-179 (261)
183 1qm9_A Polypyrimidine tract-bi 98.9 3.2E-09 1.1E-13 88.9 8.6 79 114-215 118-197 (198)
184 2hgm_A HNRPF protein, heteroge 98.9 1.6E-09 5.6E-14 89.2 6.5 79 113-213 39-119 (126)
185 2ghp_A U4/U6 snRNA-associated 98.9 3.7E-09 1.3E-13 93.8 9.2 85 114-218 115-200 (292)
186 2e5g_A U6 snRNA-specific termi 98.9 2.2E-09 7.7E-14 81.3 6.3 76 115-215 7-82 (94)
187 2adc_A Polypyrimidine tract-bi 98.9 6.7E-09 2.3E-13 90.2 9.8 79 114-215 149-228 (229)
188 1sjr_A Polypyrimidine tract-bi 98.9 7.4E-09 2.5E-13 89.7 9.5 82 114-216 44-125 (164)
189 2pe8_A Splicing factor 45; RRM 98.9 1.1E-08 3.9E-13 81.0 9.4 80 116-214 8-93 (105)
190 2dit_A HIV TAT specific factor 98.8 1.6E-08 5.4E-13 79.6 9.9 76 116-214 15-101 (112)
191 2e5i_A Heterogeneous nuclear r 98.8 3.9E-08 1.3E-12 81.0 12.2 77 118-217 27-104 (124)
192 3sde_A Paraspeckle component 1 98.8 1.5E-08 5.1E-13 89.9 10.2 89 113-226 19-119 (261)
193 3u1l_A PRE-mRNA-splicing facto 98.8 1.4E-08 4.9E-13 92.3 9.1 84 113-215 131-229 (240)
194 2voo_A Lupus LA protein; RNA-b 98.8 1.6E-08 5.6E-13 87.4 8.4 77 116-213 109-185 (193)
195 3zzy_A Polypyrimidine tract-bi 98.8 3.8E-08 1.3E-12 82.1 9.9 82 114-217 26-108 (130)
196 2yh0_A Splicing factor U2AF 65 98.7 3.7E-09 1.3E-13 87.6 3.5 85 116-215 4-88 (198)
197 2g4b_A Splicing factor U2AF 65 98.7 2.5E-08 8.7E-13 80.8 7.8 86 115-215 3-88 (172)
198 2diu_A KIAA0430 protein; struc 98.7 4E-08 1.4E-12 78.9 8.4 75 114-216 7-85 (96)
199 3tyt_A Heterogeneous nuclear r 98.7 4.6E-08 1.6E-12 85.1 8.7 80 116-212 123-204 (205)
200 3v4m_A Splicing factor U2AF 65 98.7 6.5E-08 2.2E-12 76.5 8.3 79 117-214 6-96 (105)
201 3ue2_A Poly(U)-binding-splicin 98.7 6.5E-08 2.2E-12 78.6 8.1 80 116-214 20-108 (118)
202 2j8a_A Histone-lysine N-methyl 98.6 1.7E-07 5.9E-12 79.5 8.4 78 117-213 3-94 (136)
203 1jmt_A Splicing factor U2AF 35 98.5 6.1E-08 2.1E-12 76.4 4.7 82 123-213 22-104 (104)
204 3tht_A Alkylated DNA repair pr 98.5 2.4E-07 8.2E-12 88.3 9.0 84 109-212 11-96 (345)
205 2d9o_A DNAJ (HSP40) homolog, s 98.5 4.8E-07 1.7E-11 71.6 8.7 66 126-217 27-92 (100)
206 3s6e_A RNA-binding protein 39; 98.2 6.2E-06 2.1E-10 66.6 9.1 89 118-228 9-103 (114)
207 3dxb_A Thioredoxin N-terminall 97.5 0.00021 7E-09 61.6 7.5 55 153-213 153-211 (222)
208 1owx_A Lupus LA protein, SS-B, 96.9 0.0023 8E-08 52.7 6.9 62 113-193 15-78 (121)
209 2dnr_A Synaptojanin-1; RRM dom 96.8 0.0037 1.3E-07 49.6 7.4 72 118-214 9-85 (91)
210 1wey_A Calcipressin 1; structu 96.7 0.002 7E-08 52.3 5.3 80 113-213 2-82 (104)
211 1ufw_A Synaptojanin 2; RNP dom 96.0 0.017 5.8E-07 46.2 7.1 70 117-211 16-91 (95)
212 2l9w_A U4/U6 snRNA-associated- 94.8 0.16 5.3E-06 42.1 8.8 68 116-197 21-88 (117)
213 2dhx_A Poly (ADP-ribose) polym 92.7 0.33 1.1E-05 39.4 7.0 62 112-190 4-66 (104)
214 2kn4_A Immunoglobulin G-bindin 91.3 0.12 4.2E-06 41.5 3.1 27 167-193 9-35 (158)
215 1whv_A Poly(A)-specific ribonu 68.5 17 0.00057 29.2 7.0 53 118-192 18-70 (100)
216 2i2y_A Fusion protein consists 60.0 5.1 0.00017 31.8 2.6 41 167-214 9-50 (150)
217 3ctr_A Poly(A)-specific ribonu 43.9 17 0.0006 29.1 3.3 53 118-192 8-60 (101)
218 3rw6_A Nuclear RNA export fact 43.7 37 0.0013 30.5 5.8 68 112-198 20-87 (267)
219 2hpu_A NOSL protein; alpha bet 20.1 58 0.002 27.9 2.7 35 160-194 98-133 (175)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.60 E-value=3.3e-15 Score=116.56 Aligned_cols=82 Identities=27% Similarity=0.370 Sum_probs=76.1
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
-.-|||.|+|||..+|+++|+++|.+ +|.+..+.|+.|..++.++|||||.|.++++|.++++.+||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~-------------~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 83 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSS-------------IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 83 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCC
Confidence 34689999999999999999999997 78899999999999999999999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccC
Q 037791 194 YKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAri 214 (295)
..|. ++.+.|.||++
T Consensus 84 ~~~~------gr~l~V~~AkP 98 (99)
T 4fxv_A 84 LRLQ------SKTIKVSYARP 98 (99)
T ss_dssp CEET------TEECEEEECCB
T ss_pred CEEC------CEEEEEEEeeC
Confidence 9985 56899999975
No 2
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.53 E-value=2.7e-14 Score=111.72 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=75.1
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCC--ccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSE--FDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~--YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
...-.||+|+|||...|+++|+++|.+ +|. ..-+.|+.|..|+.++|||||.|.+.++|.++++.
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~-------------~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~ 72 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSP-------------YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQI 72 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTT-------------TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHH
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHh-------------hCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHH
Confidence 445679999999999999999999998 453 55789999999999999999999999999999999
Q ss_pred hcCCcccccCCCCCceEEEEecc
Q 037791 191 CNKYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 191 fnG~~w~~~~~gS~KiceVsyAr 213 (295)
+||..+...- .++.+.|.||+
T Consensus 73 lng~~~~~~i--~Gr~i~V~~Ak 93 (95)
T 2lkz_A 73 LQSLHPPLKI--DGKTIGVDFAK 93 (95)
T ss_dssp HHSSSSCEEE--TTEEEEEEECC
T ss_pred hcCCCCCceE--CCEEEEEEEcc
Confidence 9998755332 46799999997
No 3
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.52 E-value=4.9e-14 Score=104.14 Aligned_cols=82 Identities=16% Similarity=0.259 Sum_probs=75.7
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 70 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIP-------------FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 70 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGG-------------GSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhc-------------cCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC
Confidence 456789999999999999999999987 6889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEecc
Q 037791 193 KYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAr 213 (295)
|..+. ++.+.|.||+
T Consensus 71 g~~~~------g~~l~v~~ak 85 (85)
T 3mdf_A 71 ESELF------GRTIRVNLAK 85 (85)
T ss_dssp TCEET------TEECEEEECC
T ss_pred CCEEC------CcEEEEEEcC
Confidence 99985 5688999986
No 4
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.52 E-value=1.4e-13 Score=107.91 Aligned_cols=86 Identities=15% Similarity=0.212 Sum_probs=78.3
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 88 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMP-------------FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN 88 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGG-------------GSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC
Confidence 445689999999999999999999997 6889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|..|. .+.+.|.||+.+..
T Consensus 89 g~~~~------g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 89 GFQIG------MKRLKVQLKRSKND 107 (115)
T ss_dssp TCEET------TEECEEECCCCSCC
T ss_pred CCEEC------CEEEEEEEcCCCCc
Confidence 99985 56899999987653
No 5
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1e-13 Score=104.51 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=75.7
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-------------~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 79 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSK-------------YGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN 79 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTT-------------TSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-------------cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC
Confidence 445789999999999999999999987 7889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEecc
Q 037791 193 KYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAr 213 (295)
|..+. .+.+.|.||+
T Consensus 80 g~~~~------g~~l~v~~ak 94 (94)
T 2e5h_A 80 NKQLF------GRVIKASIAI 94 (94)
T ss_dssp TEEET------TEEEEEEECC
T ss_pred CCeeC------CcEEEEEecC
Confidence 99885 5689999986
No 6
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.2e-13 Score=106.53 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=77.6
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|.. +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 86 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAE-------------YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 86 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhc-------------cCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc
Confidence 345689999999999999999999987 6889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|+.+. ++.+.|.||+.++
T Consensus 87 g~~~~------g~~l~V~~a~~~~ 104 (106)
T 1p27_B 87 GQDLM------GQPISVDWCFVRG 104 (106)
T ss_dssp TCBSS------SSBCEEEESEESS
T ss_pred CCEEC------CcEEEEEeecCCC
Confidence 99885 4578999998765
No 7
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=102.44 Aligned_cols=83 Identities=11% Similarity=0.119 Sum_probs=74.1
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...+||.|.|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 70 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAP-------------FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 70 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHh-------------cCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 45789999999999999999999997 68899999999999999999999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccCc
Q 037791 194 YKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQ 215 (295)
..+. ++.+.|.||+.+
T Consensus 71 ~~~~------g~~l~v~~a~~k 86 (87)
T 3bs9_A 71 QWLG------GRQIRTNWATRK 86 (87)
T ss_dssp CEET------TEECEEEEEC--
T ss_pred CEEC------CeEEEEEecCCC
Confidence 9885 568999999864
No 8
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.8e-13 Score=104.28 Aligned_cols=86 Identities=19% Similarity=0.328 Sum_probs=78.3
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 71 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSA-------------YGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD 71 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHT-------------TSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC
Confidence 455789999999999999999999997 7889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|..+. .+.+.|.||+.+..
T Consensus 72 g~~~~------g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 72 GQVFQ------GRMLHVLPSTIKKE 90 (99)
T ss_dssp TEESS------SCEEEEEECCCCST
T ss_pred CCEEC------CcEEEEEEcCCCcc
Confidence 99885 56899999987653
No 9
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-13 Score=104.63 Aligned_cols=90 Identities=16% Similarity=0.150 Sum_probs=78.9
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCcc-EEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFD-FLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YD-FlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
.+..+||.|.|||..+|+++|+++|.. +|.+. .+.++.|..++.+.|||||.|.+.++|.++++.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 72 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFAT-------------MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKI 72 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHH-------------TTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTT
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHH-------------hCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHH
Confidence 445789999999999999999999998 67888 9999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccCcCh
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQGk 217 (295)
||..|.... ..+.+.|.||+.++.
T Consensus 73 ~g~~~~g~~--~~~~l~v~~a~~~~~ 96 (99)
T 2div_A 73 NGKPLPGAT--PAKRFKLNYATYSGP 96 (99)
T ss_dssp TTSEESSCS--SCEECCEEETTCCSS
T ss_pred cCCccCCCC--cceeEEEeecCCCCC
Confidence 999987422 223489999998874
No 10
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.49 E-value=1.6e-13 Score=100.98 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=74.5
Q ss_pred cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW 196 (295)
Q Consensus 117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w 196 (295)
+||.|+|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~-------------~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 68 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKD-------------FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 68 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTT-------------STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee
Confidence 68999999999999999999987 78899999999999999999999999999999999999999998
Q ss_pred cccCCCCCceEEEEeccCc
Q 037791 197 EVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 197 ~~~~~gS~KiceVsyAriQ 215 (295)
. ++.+.|.||+.+
T Consensus 69 ~------g~~l~v~~a~~~ 81 (83)
T 3md1_A 69 N------GRPLRINWAAKL 81 (83)
T ss_dssp T------TEECEEEECCCC
T ss_pred C------CcEEEEEecCcC
Confidence 5 568899999865
No 11
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.1e-13 Score=102.93 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=76.1
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
..+||.|.|||..+|+++|+++|.. +|.+..+.++.|..++.++|||||.|.+.++|.++++.+||+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~-------------~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEP-------------FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 70 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence 4679999999999999999999987 788999999999999999999999999999999999999999
Q ss_pred cccccCCCCCceEEEEeccCcC
Q 037791 195 KWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQG 216 (295)
.|. .+.+.|.||+.+.
T Consensus 71 ~~~------g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 71 ELA------GRPMRVGHVTERL 86 (95)
T ss_dssp CSS------SSCCEEEESSCCC
T ss_pred eeC------CcEEEEEEccccc
Confidence 885 4579999998654
No 12
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.9e-13 Score=104.68 Aligned_cols=86 Identities=15% Similarity=0.220 Sum_probs=78.5
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..++|.|.|||..+|+++|+++|.. +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIP-------------FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 75 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTT-------------TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhc-------------cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 455789999999999999999999987 7889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|+.+. .+.+.|.||+.+..
T Consensus 76 g~~~~------g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 76 ESELF------GRTIRVNLAKPMRI 94 (102)
T ss_dssp TEEET------TEEEEEEECCCCCC
T ss_pred CCEEC------CcEEEEEeCCCCCC
Confidence 99985 56899999987653
No 13
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.9e-13 Score=101.90 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=76.2
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||+|.|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~-------------~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSK-------------YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 78 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHT-------------TSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-------------cCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 455789999999999999999999997 7889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccC
Q 037791 193 KYKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAri 214 (295)
|..+. .+.+.|.||+.
T Consensus 79 g~~~~------g~~l~v~~a~~ 94 (95)
T 2cqc_A 79 GMELD------GRRIRVSGPSS 94 (95)
T ss_dssp TEEET------TEEEEEECCSC
T ss_pred CCEEC------CEEEEEEecCC
Confidence 99885 56899999873
No 14
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.1e-13 Score=104.78 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=78.3
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||.|.|||..+|+++|+++|.. +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEK-------------YGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD 76 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC
Confidence 455789999999999999999999987 7889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|+.|. .+.+.|.||+.+..
T Consensus 77 g~~~~------g~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 77 GAELD------GRELRVQVARYGRR 95 (103)
T ss_dssp SCCBT------TBCCEEEECSSCCS
T ss_pred CCEEC------CcEEEEEECCcCCC
Confidence 99985 45789999987653
No 15
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.5e-13 Score=104.39 Aligned_cols=85 Identities=18% Similarity=0.353 Sum_probs=78.0
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||.|.|||..+|+++|+++|.. +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRP-------------FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS 78 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTT-------------TCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------CCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcC
Confidence 455789999999999999999999987 7889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|+.+. .+.+.|.||+.+.
T Consensus 79 g~~~~------g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 79 GFGYD------HLILNVEWAKPST 96 (103)
T ss_dssp TCEET------TEECEEEESSCCC
T ss_pred CCeeC------CcEEEEEECCCCC
Confidence 99985 5689999998765
No 16
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.1e-13 Score=102.90 Aligned_cols=89 Identities=17% Similarity=0.215 Sum_probs=79.9
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
..+||.|+|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~-------------~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSE-------------VGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 73 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHT-------------TSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHh-------------cCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 4679999999999999999999997 788999999999999999999999999999999999999999
Q ss_pred cccccCCCCCceEEEEeccCcChHHHHH
Q 037791 195 KWEVEAPGNKKMCEIACADIQGRDALEK 222 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQGk~aLv~ 222 (295)
.|. ++.+.|.||+.+......+
T Consensus 74 ~~~------g~~l~v~~a~~~~~~~~~~ 95 (104)
T 1p1t_A 74 EFS------GRALRVDNAASEKNKEELK 95 (104)
T ss_dssp SCS------SSCBEEEETTCTTHHHHHH
T ss_pred eeC------CcEEEEEeCCCccchhhhc
Confidence 985 4578999999887654333
No 17
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.6e-13 Score=103.10 Aligned_cols=85 Identities=13% Similarity=0.193 Sum_probs=77.2
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||.|.|||..+|+++|+++|.. +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSK-------------YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 75 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHH-------------HSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-------------cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 455789999999999999999999998 6889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. .+.+.|.||+.+.
T Consensus 76 g~~~~------g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 76 GKSVD------GRQIRVDQAGKSS 93 (102)
T ss_dssp TCCTT------SCCCEEEEEECCC
T ss_pred CCEEC------CeEEEEEECCCCC
Confidence 99885 4578999998654
No 18
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.3e-13 Score=102.92 Aligned_cols=84 Identities=15% Similarity=0.144 Sum_probs=76.0
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEE-EecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFL-YLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFl-YLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
...+||+|.|||..+|+++|+++|.. +|.+..+ .++.|..++.+.|||||.|.+.++|.++++.+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 69 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSA-------------FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 69 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHT-------------TSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcC
Confidence 34679999999999999999999998 6778778 999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|+.+. .+.+.|.||+.+.
T Consensus 70 g~~~~------g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 70 GQYLC------NRPITVSYAFKKD 87 (96)
T ss_dssp TCEET------TEECEEEESCCCC
T ss_pred CCEEC------CEEEEEEEecccC
Confidence 99985 5689999998765
No 19
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.46 E-value=3.2e-13 Score=102.81 Aligned_cols=84 Identities=14% Similarity=0.249 Sum_probs=77.7
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
.+||.|+|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 68 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSN-------------VGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ 68 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHh-------------cCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe
Confidence 369999999999999999999997 7889999999999999999999999999999999999999998
Q ss_pred ccccCCCCCceEEEEeccCcChH
Q 037791 196 WEVEAPGNKKMCEIACADIQGRD 218 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAriQGk~ 218 (295)
+. ++.+.|.||+.++..
T Consensus 69 ~~------g~~l~V~~a~~~~~~ 85 (96)
T 2x1f_A 69 LG------SRFLKCGYSSNSDIS 85 (96)
T ss_dssp ET------TEECEEEECSCSSGG
T ss_pred EC------CeEEEEEEcCCCCCC
Confidence 85 468999999988764
No 20
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=6.6e-13 Score=101.51 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=75.7
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+.|+.|. ++.+.|||||.|.+.++|.++++.+|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 79 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKA-------------HGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMD 79 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------CCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhC
Confidence 345679999999999999999999997 6888999999998 89999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. .+.+.|.||+.+.
T Consensus 80 g~~~~------g~~l~v~~a~~~~ 97 (100)
T 2do4_A 80 GMTIK------ENIIKVAISNSGP 97 (100)
T ss_dssp TEESS------SCEEEEEECCCCS
T ss_pred CCEEC------CEEEEEEECCCCC
Confidence 98885 4589999998754
No 21
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=105.90 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=71.8
Q ss_pred cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCC-CccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc-CC
Q 037791 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS-EFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN-KY 194 (295)
Q Consensus 117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G-~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn-G~ 194 (295)
+||+|+|||..+|+++|+++|.+ +| .+..+.|+.|..|+.++|||||.|.+.++|.++++.++ +.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~-------------~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~ 68 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQS-------------HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSL 68 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHH-------------HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHH-------------hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCe
Confidence 58999999999999999999998 45 67888999999999999999999999999999999874 44
Q ss_pred cccccCCCCCceEEEEeccCcCh
Q 037791 195 KWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQGk 217 (295)
.+. ++.+.|.||+.+.+
T Consensus 69 ~~~------gr~i~V~~a~~~~~ 85 (91)
T 2lxi_A 69 NIL------GQKVSMHYSDPKPK 85 (91)
T ss_dssp EET------TEEEEEECCCSCCC
T ss_pred EEC------CEEEEEEEcCCCCC
Confidence 553 56899999987643
No 22
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.44 E-value=5.7e-13 Score=104.27 Aligned_cols=86 Identities=10% Similarity=0.099 Sum_probs=78.2
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAP-------------FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 78 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 456789999999999999999999997 6889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|+.+. .+.+.|.||+.+..
T Consensus 79 g~~~~------g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 79 GQWLG------GRQIRTNWATRKPP 97 (115)
T ss_dssp TCEET------TEECEEEESSCCCC
T ss_pred CCEEC------CEEEEEEEccCCCC
Confidence 99885 56899999986643
No 23
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.44 E-value=1.8e-13 Score=103.55 Aligned_cols=82 Identities=13% Similarity=0.091 Sum_probs=69.3
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCC--CccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS--EFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G--~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
|.||.|+|||..+|+++|+++|.. +| .+..+.++.|..++.++|||||.|.+.++|.++++.+||
T Consensus 1 r~~l~V~nL~~~~t~~~l~~~F~~-------------~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g 67 (90)
T 3p5t_L 1 RIALYIGNLTWWTTDEDLTEAVHS-------------LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK 67 (90)
T ss_dssp ---CEEESCCTTCCHHHHHHHHHT-------------TTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGG
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHH-------------hCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCC
Confidence 569999999999999999999987 67 888999999999999999999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccCcC
Q 037791 194 YKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQG 216 (295)
..|. ++.+.|.+|..+.
T Consensus 68 ~~~~------gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 68 RELH------GQNPVVTPSNKLE 84 (90)
T ss_dssp SCSS------SCCCEECCC----
T ss_pred CeeC------CEEEEEEECCCCc
Confidence 9985 5578999998654
No 24
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=5e-13 Score=102.79 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=78.3
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||.|.|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQ-------------AGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD 78 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHT-------------TSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhC
Confidence 456789999999999999999999998 7889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|..+. .+.+.|.||+.+..
T Consensus 79 g~~~~------g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 79 MIKLY------GKPIRVNKASAHNK 97 (105)
T ss_dssp SCBCS------SCBCEEEETTTTSC
T ss_pred CCeEC------CeEEEEEECCCCCc
Confidence 99885 45799999987653
No 25
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=4.6e-13 Score=102.91 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=75.3
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|.. +|.+..+.|+.| ++.+.|||||.|.+.++|.++++.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSP-------------FGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 76 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTT-------------TSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhC
Confidence 446789999999999999999999987 788999999998 88999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. .+.+.|.||+.+.
T Consensus 77 g~~~~------g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 77 GRIVA------TKPLYVALAQRKE 94 (103)
T ss_dssp TCBSS------SSBCEEEECSSCC
T ss_pred CCEeC------CcEEEEEEecccc
Confidence 99985 5689999998764
No 26
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.43 E-value=2.3e-12 Score=102.47 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=76.9
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
..+..+||.|+|||..+|+++|+++|.. +|.+..+.++.|. ++.+.|||||.|.+.++|.++++.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l 96 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAE-------------FGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQY 96 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHT-------------TSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHc
Confidence 3566789999999999999999999997 7889999999998 8999999999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccCcC
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQG 216 (295)
||..+. ++.+.|.||....
T Consensus 97 ~g~~~~------g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 97 KGVPLD------GRPMDIQLVASQI 115 (124)
T ss_dssp TTEESS------SCEEEEEEECCTT
T ss_pred CCCEEC------CcEEEEEEeCCCC
Confidence 999885 4689999997643
No 27
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.43 E-value=7.1e-13 Score=102.27 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=75.1
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
..+..++|.|.|||..+|+++|+++|.. +|.+..+.|+.|. ++.+.|||||.|.+.++|.++++.+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l 90 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAE-------------FGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQY 90 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHh
Confidence 3566789999999999999999999997 7889999999998 8999999999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEecc
Q 037791 192 NKYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAr 213 (295)
||..+. .+.+.|.||.
T Consensus 91 ~g~~~~------g~~l~V~~a~ 106 (107)
T 3ulh_A 91 NGVPLD------GRPMNIQLVT 106 (107)
T ss_dssp TTCEET------TEECEEEEEC
T ss_pred CCCEeC------CcEEEEEEeC
Confidence 999985 5689999985
No 28
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.43 E-value=7.5e-13 Score=101.96 Aligned_cols=88 Identities=23% Similarity=0.254 Sum_probs=77.9
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|.. +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEE-------------FGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH 76 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHH-------------HSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 455789999999999999999999998 6889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+-. +..+.+.|.||+.+.
T Consensus 77 g~~~~~---~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 77 EQKTLP---GMNRPIQVKPADSES 97 (106)
T ss_dssp TTCCCT---TCSSCCEEEECCCCS
T ss_pred CCcccC---CCCceEEEEECCccc
Confidence 988632 135678999998764
No 29
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.43 E-value=6.5e-13 Score=103.18 Aligned_cols=85 Identities=20% Similarity=0.224 Sum_probs=77.7
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 89 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCD-------------YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN 89 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC
Confidence 345689999999999999999999987 6889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. ++.+.|.||+.++
T Consensus 90 g~~~~------g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 90 GAEIM------GQTIQVDWCFVKG 107 (110)
T ss_dssp TCEET------TEECEEEESEESS
T ss_pred CCEEC------CcEEEEEEcccCC
Confidence 99885 5689999998765
No 30
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=4.5e-13 Score=101.85 Aligned_cols=84 Identities=12% Similarity=0.175 Sum_probs=75.7
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEeccccc---CCcceeeEEEecCCHHHHHHHHHH
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFR---RRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~---t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
...+||.|.|||..+|+++|+++|.. +|.+..+.|+.|.. ++.+.|||||.|.+.++|.++++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSK-------------VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH
Confidence 45689999999999999999999987 78899999999987 678999999999999999999999
Q ss_pred hcCCcccccCCCCCceEEEEeccCcC
Q 037791 191 CNKYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 191 fnG~~w~~~~~gS~KiceVsyAriQG 216 (295)
+||+.+. .+.+.|.||+...
T Consensus 70 l~g~~~~------g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 70 LQGHTVD------GHKLEVRISERAT 89 (98)
T ss_dssp STTCEET------TEECEEECSSCSS
T ss_pred hCCCeeC------CeEEEEEEccCCC
Confidence 9999885 5689999998654
No 31
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=1.3e-12 Score=101.07 Aligned_cols=85 Identities=19% Similarity=0.296 Sum_probs=77.6
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||.|+|||..+|+++|+++|.. +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQ-------------FGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 455789999999999999999999987 7889999999999999999999999999999999999999
Q ss_pred ------CCcccccCCCCCceEEEEeccCcC
Q 037791 193 ------KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 ------G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. .+.+.|.||+.+.
T Consensus 79 ~~~~~~~~~~~------g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 79 LEAEGGGLKLD------GRQLKVDLAVTRD 102 (111)
T ss_dssp TTTTTCCEESS------SCEEEEECCCCCC
T ss_pred cccccCCcEEc------CEEEEEEECCCCc
Confidence 88875 5689999998764
No 32
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-12 Score=99.81 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=74.3
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccE--------EEecccccCCcceeeEEEecCCHHH
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDF--------LYLPMDFRRRANLGYAFVNFTTAAG 183 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDF--------lYLPiDf~t~~N~GYAFVNF~sped 183 (295)
.....++|.|.|||..+|+++|+++|.. +|.+.. +.++.|..++.+.|||||.|.+.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~ 75 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQ-------------IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPS 75 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTT-------------TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHH-------------hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHH
Confidence 3456789999999999999999999997 566766 9999999999999999999999999
Q ss_pred HHHHHHHhcCCcccccCCCCCceEEEEecc
Q 037791 184 ALRFWKACNKYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 184 A~~F~~~fnG~~w~~~~~gS~KiceVsyAr 213 (295)
|.++++.+||..|. ++.+.|.||+
T Consensus 76 a~~Ai~~l~g~~~~------g~~l~V~~A~ 99 (99)
T 2la6_A 76 AKAAIDWFDGKEFS------GNPIKVSFAT 99 (99)
T ss_dssp HHHHHHHHTTCBSS------SSBCEEEECC
T ss_pred HHHHHHHhCCCEeC------CcEEEEEecC
Confidence 99999999999885 4578999985
No 33
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1e-12 Score=100.27 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=76.0
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|.. +|.+..+.|+.|..++.+.|||||.|.+.++|.++++ +|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~ 72 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKK-------------FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH 72 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSS-------------SSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC
Confidence 445679999999999999999999987 7889999999999999999999999999999999998 99
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|+.+. .+.+.|.||+.+.
T Consensus 73 ~~~~~------g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 73 FHDIM------GKKVEVKRAEPRD 90 (99)
T ss_dssp CCBSS------SCBCEEEECCCCC
T ss_pred CCEEC------CeEEEEEECCCCc
Confidence 99885 4578999998664
No 34
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.42 E-value=5.4e-13 Score=98.85 Aligned_cols=81 Identities=15% Similarity=0.277 Sum_probs=74.0
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCc-ceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRA-NLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~-N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
.+||.|.|||..+|+++|+++|.. +|.+..+.++.|..++. +.|||||.|.+.++|.++++.+||.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFST-------------YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG 70 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHT-------------TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-------------CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC
Confidence 579999999999999999999987 78899999999988766 8999999999999999999999999
Q ss_pred cccccCCCCCceEEEEeccCc
Q 037791 195 KWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQ 215 (295)
.+. ++.+.|.||+.+
T Consensus 71 ~~~------g~~l~v~~a~~~ 85 (88)
T 4a8x_A 71 QID------GQEITATAVLAP 85 (88)
T ss_dssp EET------TEECEEEEECCC
T ss_pred eEC------CeEEEEEECCCC
Confidence 985 567899999765
No 35
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.42 E-value=3.6e-13 Score=105.81 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=74.5
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.+ +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 103 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLP-------------FGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMN 103 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTT-------------SCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcC
Confidence 345789999999999999999999987 7889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEecc
Q 037791 193 KYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAr 213 (295)
|..+. ++.+.|.||+
T Consensus 104 g~~~~------g~~l~V~~ak 118 (118)
T 2khc_A 104 GFQVG------TKRLKVQLKK 118 (118)
T ss_dssp CCEET------TEECCEEEC-
T ss_pred CCEEC------CEEEEEEecC
Confidence 99985 5678999986
No 36
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.7e-12 Score=101.33 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=77.3
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||+|.|||..+|+++|+++|.. +|.+..+.|+.|. ++.+.|||||.|.+.++|.++++.+|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 87 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKP-------------FGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFN 87 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTT-------------TSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhC
Confidence 445789999999999999999999987 7889999999998 89999999999999999999999999
Q ss_pred CCcccccC--CCCCceEEEEeccCc
Q 037791 193 KYKWEVEA--PGNKKMCEIACADIQ 215 (295)
Q Consensus 193 G~~w~~~~--~gS~KiceVsyAriQ 215 (295)
|..|.... ....+.+.|.||...
T Consensus 88 g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 88 GKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp TCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred CCEEcCCccccCCCCceeEEccCCC
Confidence 99986332 113567899999854
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=1.1e-12 Score=100.90 Aligned_cols=85 Identities=21% Similarity=0.347 Sum_probs=76.8
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEeccc-ccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMD-FRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiD-f~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
....+||.|.|||..+|+++|+++|.. +|.+..+.|+.| ..++.+.|||||.|.+.++|.++++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFST-------------FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHc-------------cCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 445789999999999999999999997 788999999999 788999999999999999999999999
Q ss_pred -cCCcccccCCCCCceEEEEeccCcC
Q 037791 192 -NKYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 192 -nG~~w~~~~~gS~KiceVsyAriQG 216 (295)
||+.|. .+.+.|.||+.+.
T Consensus 79 ~~~~~~~------g~~l~v~~a~~~~ 98 (107)
T 2cph_A 79 CHSTHLY------GRRLVLEWADSEV 98 (107)
T ss_dssp HTCCBSS------SCBCEEEECCCCC
T ss_pred ccCCeEC------CCEEEEEeCCCCC
Confidence 899885 4578999998764
No 38
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.41 E-value=8e-13 Score=104.95 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=77.8
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|.. +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 85 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAE-------------YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 85 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 344689999999999999999999997 7889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|..|. .+.+.|.||+.++.
T Consensus 86 g~~~~------g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 86 GQDLM------GQPISVDWCFVRGP 104 (126)
T ss_dssp TCBSS------SSBCEEEESEESSS
T ss_pred CCeeC------CeEEEEEEecCCCC
Confidence 99985 45789999986654
No 39
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.41 E-value=1e-12 Score=103.53 Aligned_cols=85 Identities=15% Similarity=0.227 Sum_probs=77.6
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
+....+||.|+|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l 88 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEP-------------FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 88 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTT-------------TSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 4566789999999999999999999987 788999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccCc
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQ 215 (295)
||..+. ++.+.|.||+.+
T Consensus 89 ~g~~i~------g~~l~V~~a~~k 106 (108)
T 2jrs_A 89 NGFELA------GRPMKVGHVTER 106 (108)
T ss_dssp TTCCSS------SSCCEEECSCSS
T ss_pred CCCEEC------CEEEEEEEcccC
Confidence 999885 457899999865
No 40
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1e-12 Score=102.45 Aligned_cols=86 Identities=10% Similarity=0.138 Sum_probs=76.7
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCcc--------EEEecccccCCcceeeEEEecCCHHHH
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFD--------FLYLPMDFRRRANLGYAFVNFTTAAGA 184 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YD--------FlYLPiDf~t~~N~GYAFVNF~spedA 184 (295)
....+||.|.|||..+|+++|+++|.. +|.+. .+.|+.|..++.+.|||||.|.+.++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A 78 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQ-------------CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTA 78 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTT-------------TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHH
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHh-------------cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHH
Confidence 455789999999999999999999998 56666 589999999999999999999999999
Q ss_pred HHHHHHhcCCcccccCCCCCceEEEEeccCcCh
Q 037791 185 LRFWKACNKYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 185 ~~F~~~fnG~~w~~~~~gS~KiceVsyAriQGk 217 (295)
.++++.+||+.|. .+.+.|.||+.+..
T Consensus 79 ~~Ai~~l~g~~~~------g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 79 KAAVEWFDGKDFQ------GSKLKVSLARKKPP 105 (113)
T ss_dssp HHHHHHHTTCEET------TEECEEECSSCCCC
T ss_pred HHHHHHcCCCccC------CCEEEEEECCCCCC
Confidence 9999999999985 56899999987653
No 41
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.41 E-value=9.5e-13 Score=99.31 Aligned_cols=81 Identities=10% Similarity=0.116 Sum_probs=73.7
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||.|.|||..+|+++|+++|.. +|.+..+.|+.|.. +.++|||||.|.+.++|.++++.+|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~-------------~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~ 78 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQ-------------AGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLN 78 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-------------cCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhC
Confidence 455789999999999999999999987 68899999999986 8899999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEecc
Q 037791 193 KYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAr 213 (295)
|+.+. .+.+.|.||+
T Consensus 79 g~~~~------g~~l~V~~a~ 93 (95)
T 2ywk_A 79 GIRLY------GRPINVSGPS 93 (95)
T ss_dssp TCEET------TEECEEECCC
T ss_pred CCEEC------CCEEEEEEcC
Confidence 99985 4678999986
No 42
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.40 E-value=1.2e-12 Score=104.24 Aligned_cols=82 Identities=17% Similarity=0.120 Sum_probs=75.7
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
..+||.|+|||..+|+++|+++|.+ +|.+..+.|+.|..|+.++|||||.|.+.++|.++++.+||.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~-------------~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~ 71 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRK-------------YGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT 71 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHh-------------cCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3569999999999999999999987 789999999999999999999999999999999999999999
Q ss_pred cccccCCCCCceEEEEeccCc
Q 037791 195 KWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQ 215 (295)
.+. .+.+.|.+|+-.
T Consensus 72 ~~~------gr~i~V~~a~~~ 86 (110)
T 3s8s_A 72 SVM------GNIIHAQLDIKG 86 (110)
T ss_dssp EET------TEECEEEECSTT
T ss_pred EEC------CeEEEEEECCCC
Confidence 985 568999999743
No 43
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.40 E-value=6.6e-13 Score=108.21 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=77.7
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
..+..+||.|.|||..+|+++|+++|.. +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-------------~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~l 108 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSK-------------YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 108 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTT-------------TSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 3456789999999999999999999987 788999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccCcC
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQG 216 (295)
||..+. .+.+.|.||+.+.
T Consensus 109 ng~~i~------g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 109 NGMELD------GRRIRVDFSITKR 127 (129)
T ss_dssp TTCCSS------SSCCEESCCSSSS
T ss_pred CCCEEC------CEEEEEEEecCCC
Confidence 999885 4578999998653
No 44
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.3e-12 Score=102.67 Aligned_cols=84 Identities=17% Similarity=0.202 Sum_probs=75.5
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|.. +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 80 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEG-------------FGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 80 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHT-------------TSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------CCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC
Confidence 455789999999999999999999997 7889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
+ .+. .+.+.|.||..+.
T Consensus 81 ~-~~~------g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 81 P-IID------GRKANVNLAYLGA 97 (116)
T ss_dssp C-EET------TEECEEEESTTTC
T ss_pred C-cCC------CEEEEEEEcccCC
Confidence 8 553 5689999997653
No 45
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.40 E-value=1.3e-12 Score=98.07 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=73.1
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|.+ +|.+..+.+..| ++.+.|||||.|.+.++|.++++.+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-------------~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~ 69 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNE-------------CGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMN 69 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHT-------------TSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhC
Confidence 455789999999999999999999998 677888888774 78899999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..|. .+.+.|.||+.+.
T Consensus 70 g~~~~------g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 70 GMKLS------GREIDVRIDRNAS 87 (92)
T ss_dssp TCCBT------TBCCCCEECSCCS
T ss_pred CCEEC------CcEEEEEEcCCCC
Confidence 99985 4578999998764
No 46
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.40 E-value=1.9e-12 Score=99.60 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=76.1
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...+||.|.|||..+|+++|+++|.. +|.+..+.|+.|. ++.+.|||||.|.+.++|.++++.+||
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g 78 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQP-------------FGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHG 78 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcC
Confidence 45789999999999999999999997 7889999999997 788999999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccCcC
Q 037791 194 YKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQG 216 (295)
..|.. +..+.+.|.||+.+.
T Consensus 79 ~~~~g---g~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 79 SQTMP---GASSSLVVKFADTDK 98 (105)
T ss_dssp CCCCT---TCSSCCEEEESCSSC
T ss_pred CccCC---CCCccEEEEECccCc
Confidence 99863 233688999998654
No 47
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=6.7e-13 Score=100.90 Aligned_cols=84 Identities=12% Similarity=0.024 Sum_probs=74.4
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
+.+..++|+|+|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~-------------~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 77 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYG-------------YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 77 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTT-------------SCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHH-------------cCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 3556789999999999999999999987 566766778888889999999999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccC
Q 037791 192 NKYKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAri 214 (295)
||..|. .+.+.|.||+-
T Consensus 78 ~g~~~~------g~~l~V~~a~~ 94 (98)
T 2cqp_A 78 NDRPIG------SRKVKLVLGSG 94 (98)
T ss_dssp TTCEET------TEECEEEESSC
T ss_pred CCCeeC------CeEEEEEEcCC
Confidence 999885 46889999874
No 48
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.39 E-value=5.4e-13 Score=109.31 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=78.4
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|.. +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+|
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~-------------~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~ 110 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEK-------------YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD 110 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGG-------------GSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 455789999999999999999999987 6889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|..+. .+.+.|.||+.+..
T Consensus 111 g~~i~------g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 111 GAVLD------GRELRVQMARYGRP 129 (135)
T ss_dssp TCCSS------SSCCEEEECCCCCC
T ss_pred CCEEC------CEEEEEEECCCCCC
Confidence 99985 45789999997754
No 49
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.39 E-value=6.9e-13 Score=102.73 Aligned_cols=82 Identities=12% Similarity=0.218 Sum_probs=74.9
Q ss_pred CccEEEEcCCCC------ccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHH
Q 037791 115 ENTTLMIRNIPN------NLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFW 188 (295)
Q Consensus 115 ~RTTVMIRNIPN------k~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~ 188 (295)
..+||.|.|||. ..++++|+++|.. +|.+..+.|+.|..|+.++|||||.|.++++|.+++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~-------------~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai 71 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSK-------------AGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKII 71 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHT-------------TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHH
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHh-------------cCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 357999999999 9999999999997 789999999999999999999999999999999999
Q ss_pred HHhcCCcccccCCCCCceEEEEeccC
Q 037791 189 KACNKYKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 189 ~~fnG~~w~~~~~gS~KiceVsyAri 214 (295)
+.+||..+.. .+.+.|.||..
T Consensus 72 ~~lng~~~~g-----~r~l~V~~a~~ 92 (100)
T 3ns6_A 72 KSFHGKRLDL-----KHRLFLYTMKD 92 (100)
T ss_dssp HHHTTCBSSS-----SCBCEEEESHH
T ss_pred HHhCCcccCC-----CeEEEEEECch
Confidence 9999999862 25789999963
No 50
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-12 Score=104.51 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=73.7
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+.++.|..++.++|||||.|.+.++|.++++.+|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 126 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIP-------------FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 126 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGG-------------GSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHh-------------cCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 445789999999999999999999987 7889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEec
Q 037791 193 KYKWEVEAPGNKKMCEIACA 212 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyA 212 (295)
|..+. ++.+.|.||
T Consensus 127 g~~~~------g~~l~v~~A 140 (140)
T 2ku7_A 127 ESELF------GRTIRVNLA 140 (140)
T ss_dssp EEEET------TEEEEEEC-
T ss_pred CCEEC------CEEEEEEeC
Confidence 99885 568899887
No 51
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.39 E-value=1.9e-12 Score=103.10 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=76.2
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||.|.|||..+|+++|+++|.. +|.+..+.++.|. ++.+.|||||.|.+.++|.++++.+|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~ 69 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGK-------------HGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMN 69 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHT-------------SSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhC
Confidence 455689999999999999999999997 7889999999998 89999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. ++.+.|.||+.+.
T Consensus 70 g~~~~------g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 70 GKSLH------GKAIKVEQAKKPS 87 (116)
T ss_dssp SCBCS------SSBCEEEECCCSS
T ss_pred CCEEC------CEEEEEEECCCCC
Confidence 99985 4578999998654
No 52
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.38 E-value=2e-12 Score=104.24 Aligned_cols=85 Identities=20% Similarity=0.287 Sum_probs=77.4
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||+|.|||..+|+++|+++|.. +|.+..+.++.|..++.++|||||.|.+.++|.++++.+|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 105 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFER-------------YGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN 105 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHH-------------HSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 455789999999999999999999998 6888999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. .+.+.|.||+...
T Consensus 106 g~~~~------g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 106 GFNIL------NKRLKVALAASGH 123 (139)
T ss_dssp TEECS------SCEEEEEESSCCC
T ss_pred CCEEC------CeEEEEEECCCCC
Confidence 99885 5689999998653
No 53
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.3e-12 Score=100.65 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=76.4
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||.|+|||..+|+++|+++|.. +|.+..+.|+.|..++.++|||||.|.+.++|.++++. |
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~ 78 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQ-------------YGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-R 78 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHT-------------TSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-C
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-C
Confidence 456789999999999999999999997 78899999999999999999999999999999999999 9
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|+.+. .+.+.|.||+.+.
T Consensus 79 ~~~~~------g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 79 PHTLD------GRNIDPKPCTPRG 96 (105)
T ss_dssp SEEET------TEEEBCCCSCCSS
T ss_pred CCeEC------CEEEEEEEccCCC
Confidence 98885 5688999998654
No 54
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.38 E-value=1.8e-12 Score=102.70 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=71.8
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
.-|||.|+|||..+|+++|+++|.+ +|.+..+.|+.|.. .++|||||.|.+.++|.++++.+||+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~-------------~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~ 68 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSA-------------FGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGM 68 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhc-------------cCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCC
Confidence 3679999999999999999999997 68888999999854 37899999999999999999999999
Q ss_pred cccccCCCCCceEEEEeccCcC
Q 037791 195 KWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQG 216 (295)
.+. ++.+.|.||+.+.
T Consensus 69 ~~~------g~~i~V~~a~~~~ 84 (115)
T 4f25_A 69 LLN------DRKVFVGRFKSRK 84 (115)
T ss_dssp EET------TEECEEEESSCCC
T ss_pred EEC------CEEEEEEECCCcc
Confidence 985 5688999998654
No 55
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=3.2e-12 Score=98.21 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=74.1
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|.. +|.+..+.|..|..+ +.|||||.|.+.++|.++++.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-------------~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~ 76 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQ-------------FGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLH 76 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGG-------------TSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhC
Confidence 455789999999999999999999987 788999999998653 89999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|+.|. .+.+.|.||+.+.
T Consensus 77 g~~~~------g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 77 GTVVE------GRKIEVNNATARV 94 (103)
T ss_dssp TCEET------TEECEEEECCSSC
T ss_pred CCEEC------CEEEEEEEcccCC
Confidence 99985 5689999998764
No 56
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.37 E-value=2.5e-12 Score=105.49 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=77.8
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....++|.|.|||..+|+++|+++|.. +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~-------------~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 133 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEK-------------YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD 133 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHH-------------HSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHST
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 455789999999999999999999987 6889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|+.|. ++.+.|.||+.+.
T Consensus 134 g~~~~------g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 134 GAVLD------GRELRVQMARYGR 151 (158)
T ss_dssp TEESS------SSEEEEEEECCSS
T ss_pred CCEEC------CeEEEEEECCCCC
Confidence 99985 5689999998764
No 57
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.37 E-value=2.9e-12 Score=105.66 Aligned_cols=85 Identities=13% Similarity=0.244 Sum_probs=77.5
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||.|.|||..+|+++|+++|.. +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 102 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSK-------------SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN 102 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 455789999999999999999999987 6889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|+.|. .+.+.|.||+...
T Consensus 103 g~~~~------g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 103 GTRLD------DRIIRTDWDAGFK 120 (156)
T ss_dssp TSEET------TEECEEEEESCCC
T ss_pred CCEEC------CeEEEEEECCCCC
Confidence 99985 5689999998543
No 58
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.36 E-value=2.1e-12 Score=96.13 Aligned_cols=79 Identities=9% Similarity=0.136 Sum_probs=73.1
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
.+||.|+|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.+++ .+||..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~ 71 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHG-------------CGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESL 71 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGG-------------GCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-------------CCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCE
Confidence 469999999999999999999997 688999999999999999999999999999999999 999999
Q ss_pred ccccCCCCCceEEEEeccC
Q 037791 196 WEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAri 214 (295)
+. ++.+.|.||+.
T Consensus 72 ~~------g~~l~V~~a~~ 84 (89)
T 3ucg_A 72 FR------GRQIKVIPKRT 84 (89)
T ss_dssp ET------TEECEEEETTT
T ss_pred EC------CcEEEEEEccC
Confidence 85 56789999975
No 59
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=3.9e-12 Score=97.68 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=73.8
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||.|.|||..+|+++|+++|.. +|.+..+.|+.|..+ +.|||||.|.+.++|.++++.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~ 76 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQ-------------IGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMN 76 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHH-------------HSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHh-------------cCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhC
Confidence 455789999999999999999999998 678889999998544 68999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. .+.+.|.||+.+.
T Consensus 77 g~~~~------g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 77 GRKIL------GKEVKVNWATTPS 94 (103)
T ss_dssp TEEET------TEEEEEEECCCTT
T ss_pred CCCcC------CCeEEEEECCCCc
Confidence 99985 5689999998754
No 60
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=2.2e-12 Score=98.65 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=72.0
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|.. |--+.+..|..++.+.|||||.|.+.++|.++++.+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~----------------~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDG----------------SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 75 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTT----------------CSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcC----------------CeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 455789999999999999999988864 3457888898899999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|+.+. .+.+.|.||+.+.
T Consensus 76 g~~~~------g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 76 DGEID------GNKVTLDWAKPKG 93 (102)
T ss_dssp TCEET------TEECEEEECCCCC
T ss_pred CCeEC------CeEEEEEEecCCC
Confidence 99885 5689999998764
No 61
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.4e-12 Score=101.71 Aligned_cols=84 Identities=20% Similarity=0.245 Sum_probs=71.5
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...+||.|.|||..+|+++|+++|..+ |.+..+.+.++..++.+.|||||.|.+.++|.++++.+||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-------------G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 89 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARF-------------QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNG 89 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHH-------------HHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh-------------CCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 346799999999999999999999984 4555555566666889999999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccCcC
Q 037791 194 YKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQG 216 (295)
..+. .+.+.|.||+.+.
T Consensus 90 ~~~~------g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 90 YKLY------GKILVIEFGKNKK 106 (115)
T ss_dssp CBCS------SCBCEEEECCCCS
T ss_pred CEeC------CcEEEEEEccCCC
Confidence 9884 4578999998764
No 62
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=2.4e-12 Score=98.55 Aligned_cols=82 Identities=22% Similarity=0.428 Sum_probs=71.0
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.+ +|. +.++.| .++.+.|||||.|.+.++|.++++.+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~g~---v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~ 74 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEK-------------ATF---IKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCN 74 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSS-------------CSE---EECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------CCE---EEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhC
Confidence 345789999999999999999999876 343 467777 778899999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|+.+. .+.+.|.||+.++.
T Consensus 75 g~~~~------g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 75 KREIE------GRAIRLELQGPRGS 93 (101)
T ss_dssp SEEET------TEEEEEEECSSCCC
T ss_pred CCEeC------CeEEEEEEcCCCCC
Confidence 99885 56899999988754
No 63
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.35 E-value=1.4e-12 Score=98.32 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=71.4
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.++++|.++++.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 78 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYG-------------YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN 78 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTT-------------SCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhC
Confidence 334689999999999999999999987 5677777888888899999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEecc
Q 037791 193 KYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAr 213 (295)
|+.|. .+.+.|.+|.
T Consensus 79 g~~~~------gr~l~v~~a~ 93 (95)
T 2ek1_A 79 DRPIG------SRKVKLSGPS 93 (95)
T ss_dssp TCEET------TEECEEECCC
T ss_pred CCeEC------CcEEEEEecc
Confidence 99985 4578888875
No 64
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.2e-12 Score=98.95 Aligned_cols=84 Identities=11% Similarity=0.033 Sum_probs=74.8
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+.|+.|. ++.+.|||||.|.+.++|.++++.+|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~-------------~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 77 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSM-------------AGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFN 77 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 344679999999999999999999987 7889999999997 58899999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|+.+. .+.+.|.||+.+.
T Consensus 78 g~~~~------g~~l~v~~a~~~~ 95 (114)
T 2do0_A 78 GQLLF------DRPMHVKMDERAL 95 (114)
T ss_dssp TCEET------TEECEEEECSCCC
T ss_pred CCEeC------CCEEEEEEcccCC
Confidence 99985 5678999997643
No 65
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.35 E-value=2.2e-12 Score=108.70 Aligned_cols=86 Identities=10% Similarity=0.096 Sum_probs=76.9
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCC--CccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS--EFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G--~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
+..+||.|.|||..+|+++|+++|.. +| .+..+.|+.|..++.++|||||.|.+.++|.++++.+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~-------------~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~l 119 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRS-------------IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELL 119 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHH-------------TTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-------------HCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 45789999999999999999999987 67 8889999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccCcChH
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQGRD 218 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQGk~ 218 (295)
||+.+. ++.+.|.||..|...
T Consensus 120 ng~~~~------Gr~l~V~~a~~~~~~ 140 (156)
T 3n9u_C 120 PGKVLN------GEKVDVRPATRQNLS 140 (156)
T ss_dssp TTCEET------TEECEEEECCHHHHH
T ss_pred CCCEEC------CeEeEEEEcCCCcch
Confidence 999985 568999999877654
No 66
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.7e-13 Score=99.31 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=66.4
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...+||.|.|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~-------------~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQP-------------YGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTT-------------TSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC
Confidence 34679999999999999999999987 78899999999999999999999999999999999999999
Q ss_pred Cccc
Q 037791 194 YKWE 197 (295)
Q Consensus 194 ~~w~ 197 (295)
+.+.
T Consensus 70 ~~~~ 73 (85)
T 1x4e_A 70 SGVQ 73 (85)
T ss_dssp HTCC
T ss_pred CeEe
Confidence 9886
No 67
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=3.2e-12 Score=98.56 Aligned_cols=82 Identities=15% Similarity=0.239 Sum_probs=74.1
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccC-CcceeeEEEecCCHHHHHHHHHHhc
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRR-RANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t-~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
...+||.|.|||..+|+++|+++|.. +| +..+.|+.|..+ +.+.|||||.|.+.++|.+++ .+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~ 77 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRG-------------LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN 77 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTT-------------SC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHH-------------CC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC
Confidence 34689999999999999999999987 67 889999999988 899999999999999999999 999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. .+.+.|.||+.+.
T Consensus 78 g~~~~------g~~l~V~~a~~~~ 95 (104)
T 1wi8_A 78 EESLG------NKRIRVDVADQAQ 95 (104)
T ss_dssp TCEET------TEECEEEECCCCC
T ss_pred CCEeC------CcEEEEEEccCCC
Confidence 99885 5689999998654
No 68
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.7e-12 Score=96.94 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=73.0
Q ss_pred CCCccEEEEcCCCCccCHHHHH----HHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHH
Q 037791 113 LGENTTLMIRNIPNNLKRRDLL----HILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFW 188 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll----~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~ 188 (295)
....+||.|.|||..+|+++|+ ++|.. +|.+..+.++.|..+ +|||||.|.+.++|.+++
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~-------------~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai 69 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFAR-------------HGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAV 69 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHH-------------HSCEEEEEECSCCST---TCCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccc-------------cCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHH
Confidence 4557899999999999999999 77776 688899999999876 899999999999999999
Q ss_pred HHhcCCcccccCCCCCceEEEEeccCcC
Q 037791 189 KACNKYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 189 ~~fnG~~w~~~~~gS~KiceVsyAriQG 216 (295)
+.+||..|. .+.+.|.||+.+.
T Consensus 70 ~~l~g~~~~------gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 70 NSLHRYKIG------SKKILVSLATGAS 91 (96)
T ss_dssp HHHTTEEET------TEEEEEEECCCSS
T ss_pred HHhCCCEEC------CeEEEEEEcCCCC
Confidence 999999985 5689999998653
No 69
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.34 E-value=3.5e-12 Score=98.18 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=74.4
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||.|.|||..+|+++|+++|.. +| +..+.++.|..++.+.|||||.|.+.++|.+++ .+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~ 76 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKD-------------LS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD 76 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTT-------------SC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGT
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHh-------------CC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhC
Confidence 345789999999999999999999987 45 888999999999999999999999999999999 899
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. .+.+.|.||+.+.
T Consensus 77 g~~~~------g~~l~V~~a~~~~ 94 (103)
T 2dng_A 77 GALLG------DRSLRVDIAEGRK 94 (103)
T ss_dssp TCEET------TEECEEEECCCCC
T ss_pred CCeEC------CeEEEEEEecCCC
Confidence 99885 5688999998654
No 70
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=7.2e-12 Score=94.21 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=73.1
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. + .+..+.|+.| .++.+.|||||.|.+.++|.++++ +|
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~-------------~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~ 70 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAP-------------L-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CN 70 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTT-------------S-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SC
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhh-------------C-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hC
Confidence 345679999999999999999999987 4 6788999999 889999999999999999999999 99
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. .+.+.|.||+.+.
T Consensus 71 g~~~~------gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 71 REYMG------GRYIEVFREKSGP 88 (91)
T ss_dssp SEEET------TEEEEEEEESSCC
T ss_pred CceeC------CcEEEEEECCcCC
Confidence 99885 4589999998764
No 71
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.34 E-value=2.3e-12 Score=104.08 Aligned_cols=84 Identities=18% Similarity=0.248 Sum_probs=75.2
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccE--EEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDF--LYLPMDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDF--lYLPiDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
....+||+|+|||..+|+++|+++|.. +|.+.. +.|+.|..++.++|||||.|.+. +|.++++.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~-------------~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~ 85 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAP-------------YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQI 85 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGG-------------GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-------------hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHH
Confidence 455789999999999999999999997 677877 99999999999999999999999 99999999
Q ss_pred hcCC----cccccCCCCCceEEEEeccCcC
Q 037791 191 CNKY----KWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 191 fnG~----~w~~~~~gS~KiceVsyAriQG 216 (295)
+||. .+. .+.+.|.||+.+.
T Consensus 86 l~g~~~~~~~~------gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 86 LQALHPPLTID------GKTINVEFAKGSK 109 (131)
T ss_dssp HTTCCCSCCGG------GCCCCCEECCCSC
T ss_pred hcCCCCCccCC------CEEEEEEECCCCC
Confidence 9999 664 5578999998753
No 72
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.34 E-value=4.6e-12 Score=94.33 Aligned_cols=80 Identities=14% Similarity=0.214 Sum_probs=71.1
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++. +
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~ 73 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTK-------------FGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-K 73 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTT-------------TSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------CCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-C
Confidence 456789999999999999999999987 78899999999999999999999999999999999965 7
Q ss_pred CCcccccCCCCCceEEEEec
Q 037791 193 KYKWEVEAPGNKKMCEIACA 212 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyA 212 (295)
|+.+. ++.+.|.+|
T Consensus 74 ~~~~~------g~~i~v~~A 87 (87)
T 3s7r_A 74 EHRLD------GRVIDPKKA 87 (87)
T ss_dssp CEEET------TEEEEEEEC
T ss_pred CCEEC------CEEEEEEeC
Confidence 77653 567888886
No 73
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=3.1e-12 Score=100.12 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=74.9
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...+||.|.|||..+|+++|+++|.. +|.+..+.|+.|..++.+.|||||.|.+.++|.+++ .+||
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g 88 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSA-------------VGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTG 88 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-------------CCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCC
Confidence 44679999999999999999999987 788999999999999999999999999999999999 9999
Q ss_pred CcccccCCCCCceEEEEeccCc
Q 037791 194 YKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQ 215 (295)
+.+. .+.+.|.||+.+
T Consensus 89 ~~~~------g~~l~V~~a~~~ 104 (114)
T 2cq4_A 89 QRLL------GVPIIVQASQAE 104 (114)
T ss_dssp EEET------TEEEEEEEHHHH
T ss_pred CEeC------CeEEEEEecCCC
Confidence 9885 568999999754
No 74
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.34 E-value=2.5e-12 Score=93.32 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=68.1
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
+|.|.|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++ +||+.+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~ 66 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQ-------------FGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN 66 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHT-------------TSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS
T ss_pred CEEEecCCCCCCHHHHHHHHHh-------------cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC
Confidence 5899999999999999999997 6889999999999999999999999999999999988 8999885
Q ss_pred ccCCCCCceEEEEec
Q 037791 198 VEAPGNKKMCEIACA 212 (295)
Q Consensus 198 ~~~~gS~KiceVsyA 212 (295)
++.+.|.||
T Consensus 67 ------g~~l~v~~A 75 (75)
T 2mss_A 67 ------NKMVECKKA 75 (75)
T ss_dssp ------SCCCEEECC
T ss_pred ------CEEEEEEeC
Confidence 446788876
No 75
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.34 E-value=2.1e-12 Score=107.37 Aligned_cols=109 Identities=15% Similarity=0.074 Sum_probs=75.5
Q ss_pred ccccCCccCCcccccccCCccCCCCCCcccccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCC---c
Q 037791 80 AVTRPLTMRGKVVGHKRNLKWAPKNRDDVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSE---F 156 (295)
Q Consensus 80 ~~~~p~~~~~~~~~~~r~~~~~p~~~~~~~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~---Y 156 (295)
-.+.|+.+.|+..+ +++..+.. ...+..++|.|+|||.+.|+++|+++|.. +|. .
T Consensus 17 ~~~~~~~~~gg~~~-g~g~~~~~--------~~~~~~~~lfVgnLp~~~te~dL~~~F~~-------------~G~v~~v 74 (136)
T 2hgl_A 17 RGSHMASMTGGQQM-GRGSMMLG--------PEGGEGFVVKLRGLPWSCSVEDVQNFLSD-------------CTIHDGA 74 (136)
T ss_dssp -------------------CCSC--------SSCCTTCEEEEESCCTTCCHHHHHHHTTT-------------CCCSSSS
T ss_pred hccCCCcccCCCCC-CCCCCCCC--------CCCCCCCEEEEeCCCCCCCHHHHHHHHHH-------------hCCcCce
Confidence 45567777655221 23222221 13456789999999999999999999997 566 7
Q ss_pred cEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEeccCcChH
Q 037791 157 DFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRD 218 (295)
Q Consensus 157 DFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyAriQGk~ 218 (295)
..+.|+.|.. +.++|||||.|.+.++|.++++ +||+.+. .+.++|.+|.....+
T Consensus 75 ~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~------gr~i~V~~a~~~e~~ 128 (136)
T 2hgl_A 75 AGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMG------HRYIEVFKSHRTEMD 128 (136)
T ss_dssp TTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESS------SSEEEEEECCHHHHH
T ss_pred eEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEEC------CEEEEEEECChHHHH
Confidence 8899999987 8999999999999999999999 9998875 457899998654433
No 76
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=4e-12 Score=98.33 Aligned_cols=85 Identities=19% Similarity=0.209 Sum_probs=73.7
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCC-ccEEEec-ccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSE-FDFLYLP-MDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~-YDFlYLP-iDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
...+||.|.|||..+|+++|+++|.+ +|. +..+.++ .|..++.+.|||||.|.+.++|.++++.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~-------------~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 72 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAK-------------VTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 72 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHH-------------HSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHH-------------hcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHh
Confidence 34689999999999999999999998 566 7788888 88888999999999999999999999999
Q ss_pred c--CCcccccCCCCCceEEEEeccCcCh
Q 037791 192 N--KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 192 n--G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
| +..|. .+.+.|.||+.+..
T Consensus 73 ~~g~~~~~------g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 73 MPGRIQLW------GHQIAVDWAEPEID 94 (109)
T ss_dssp TTCCSCBT------TBCCEEEESCSSCS
T ss_pred hCCCceec------CCeEEEEEcCCCCC
Confidence 6 47775 45789999987653
No 77
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.33 E-value=6.1e-12 Score=100.98 Aligned_cols=82 Identities=22% Similarity=0.360 Sum_probs=75.3
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
.|||+|+|||..+|+++|+++|.. +|.+..+.+..|..++.+.|||||.|.+.++|.++++.+||..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~-------------~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 68 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGS-------------IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLR 68 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCc
Confidence 589999999999999999999997 7889999999999899999999999999999999999999998
Q ss_pred ccccCCCCCceEEEEeccCcC
Q 037791 196 WEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAriQG 216 (295)
+. ++.+.|.||+.+.
T Consensus 69 ~~------g~~l~v~~~~~~~ 83 (167)
T 1fxl_A 69 LQ------TKTIKVSYARPSS 83 (167)
T ss_dssp ET------TEECEEEECCCCC
T ss_pred cC------CceEEEEecCCCc
Confidence 85 4578899988654
No 78
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.2e-11 Score=96.10 Aligned_cols=82 Identities=13% Similarity=0.229 Sum_probs=71.4
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|.+ +|.+..+.++.+ +.+.|||||.|.+.++|.++++.+|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~ 82 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYK-------------YGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRD 82 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcC
Confidence 445689999999999999999999998 678888888665 4478999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. .+.+.|.||+.+.
T Consensus 83 g~~~~------g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 83 GYDYD------GYRLRVEFPRSGR 100 (109)
T ss_dssp TCEET------TEECEEECCCCCC
T ss_pred CCEEC------CeEEEEEEcccCC
Confidence 99885 5689999998754
No 79
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=2e-12 Score=93.77 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=68.8
Q ss_pred cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW 196 (295)
Q Consensus 117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w 196 (295)
|||.|+|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.++ ..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~-------------~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~ 66 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQ-------------FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL 66 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTT-------------TSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc
Confidence 68999999999999999999987 6888999999999999999999999999999999999998 666
Q ss_pred cccCCCCCceEEEEec
Q 037791 197 EVEAPGNKKMCEIACA 212 (295)
Q Consensus 197 ~~~~~gS~KiceVsyA 212 (295)
. ++.+.|.||
T Consensus 67 ~------g~~l~v~~a 76 (77)
T 1uaw_A 67 D------SKTIDPKVA 76 (77)
T ss_dssp S------SCCCEEEEC
T ss_pred C------CEEEEEEec
Confidence 4 456788877
No 80
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.33 E-value=9.7e-13 Score=98.58 Aligned_cols=81 Identities=9% Similarity=0.134 Sum_probs=70.9
Q ss_pred cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW 196 (295)
Q Consensus 117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w 196 (295)
+||.|.|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.+ |.++++.+||..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~ 67 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQ-------------FGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF 67 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHH-------------HTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC
T ss_pred cEEEECCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE
Confidence 68999999999999999999998 678899999999999999999999999999 9999999999998
Q ss_pred cccCCCCCceEEEEeccCcCh
Q 037791 197 EVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 197 ~~~~~gS~KiceVsyAriQGk 217 (295)
. ++.+.|.||..+..
T Consensus 68 ~------g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 68 M------GRTIRVTEANPKKS 82 (90)
T ss_dssp S------SSSCSEEEC-----
T ss_pred C------CeEEEEEEcCCCCC
Confidence 5 45789999986543
No 81
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=9.1e-12 Score=95.61 Aligned_cols=83 Identities=14% Similarity=0.327 Sum_probs=73.1
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||+|.|||..+|+++|+++|.. +|.+..+.|+.|..++.++|||||.|.+.++|.++++ +
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~ 76 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFST-------------FGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--Q 76 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGG-------------GSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--S
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--c
Confidence 455789999999999999999999987 6889999999999999999999999999999999998 4
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
++.+. .+.+.|.||+.+.
T Consensus 77 ~~~~~------g~~l~v~~a~~~~ 94 (103)
T 2cqg_A 77 RHMID------GRWCDCKLPNSKQ 94 (103)
T ss_dssp CEEET------TEEEEEECCCTTC
T ss_pred CCeeC------CeEEEEEecCCCC
Confidence 66553 5689999998654
No 82
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=4.6e-12 Score=99.46 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=75.6
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
+..+||.|.|||..+|+++|+++|.. +|.+..+.|+.|..++.+.|||||.|.+.++|.++++. ||
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~ 90 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQ-------------WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RP 90 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTS-------------SCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CC
Confidence 44689999999999999999999987 78899999999999999999999999999999999998 99
Q ss_pred CcccccCCCCCceEEEEeccCcC
Q 037791 194 YKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQG 216 (295)
+.+. .+.+.|.||+.+.
T Consensus 91 ~~~~------g~~l~V~~a~~~~ 107 (116)
T 1x4b_A 91 HSID------GRVVEPKRAVARE 107 (116)
T ss_dssp EEET------TEEEEEECCSSCC
T ss_pred cEEC------CEEEEEEECCCCc
Confidence 8875 5689999998764
No 83
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=4.3e-12 Score=97.39 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=74.5
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||.|.|||..+|+++|+++|... +|.+..+.|+.|. ++.+.|||||.|.+.++|.++++.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~------------~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 72 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKV------------YPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQ 72 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHH------------CTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHh------------CCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHcc
Confidence 4456899999999999999999999972 5778889999998 89999999999999999999999999
Q ss_pred CCc-ccccCCCCCceEEEEeccCcC
Q 037791 193 KYK-WEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~-w~~~~~gS~KiceVsyAriQG 216 (295)
|.. +. .+.+.|.||+.+.
T Consensus 73 g~~~~~------g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 73 GAVGLG------SKPVRLSVAIPKA 91 (104)
T ss_dssp TCCSSS------SSCCCCCBCCCCC
T ss_pred CCcccC------CEeEEEEEccCCC
Confidence 998 64 4468899987553
No 84
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=4.6e-12 Score=96.97 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=69.8
Q ss_pred cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW 196 (295)
Q Consensus 117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w 196 (295)
|||.|.|||..+|+++|+++|.+ +|.+..+.++.| +.|||||.|.+.++|.++++.+||..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~ 62 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSY-------------YGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVI 62 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHH-------------HCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeE
Confidence 79999999999999999999998 678889999988 689999999999999999999999987
Q ss_pred cccCCCCCceEEEEeccCcCh
Q 037791 197 EVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 197 ~~~~~gS~KiceVsyAriQGk 217 (295)
. .+.+.|.||+.+..
T Consensus 63 ~------g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 63 C------GSRVRVELSTGMPR 77 (101)
T ss_dssp S------SCCCEEEESSSCCC
T ss_pred C------CcEEEEEEccCCCC
Confidence 5 45689999987763
No 85
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.32 E-value=1.5e-11 Score=105.46 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=76.3
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||.|.|||..+|+++|+++|.+ +|.+..+.|+.|. ++.+.|||||.|.+.++|.++++.+|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~-------------~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~ln 150 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAE-------------FGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYK 150 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHH-------------TSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHST
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhC
Confidence 455789999999999999999999998 7889999999998 89999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. .+.+.|.||....
T Consensus 151 g~~l~------Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 151 GVPLD------GRPMDIQLVASQI 168 (177)
T ss_dssp TCBCS------SSBCEEEEESSGG
T ss_pred CCEEC------CEEEEEEEecCCC
Confidence 99885 4578999997654
No 86
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.31 E-value=8.8e-12 Score=99.96 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=75.7
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....++|.|+|||..+|+++|+++|.. +|.+..+.+..|..++.+.|||||.|.+.++|.++++.+|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~-------------~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKD-------------FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTT-------------STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhc-------------cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 455789999999999999999999987 7889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEecc
Q 037791 193 KYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAr 213 (295)
|..+. ++.+.|.||+
T Consensus 151 g~~~~------g~~i~v~~a~ 165 (166)
T 3md3_A 151 GQDLN------GRPLRINWAA 165 (166)
T ss_dssp TCEET------TEECEEEESC
T ss_pred CCccC------CcEEEEEecC
Confidence 99985 5689999996
No 87
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.31 E-value=5.8e-12 Score=105.36 Aligned_cols=86 Identities=20% Similarity=0.228 Sum_probs=77.1
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...+||.|.|||..+|+++|.++|.. +|.+..+.|+.|..++.+.|||||.|.+.++|..+++.+||
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 136 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCD-------------YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG 136 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhc-------------CCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC
Confidence 44679999999999999999999987 78899999999999999999999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccCcChH
Q 037791 194 YKWEVEAPGNKKMCEIACADIQGRD 218 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQGk~ 218 (295)
..|. .+.+.|.||..++..
T Consensus 137 ~~~~------g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 137 AEIM------GQTIQVDWCFVKGPK 155 (165)
T ss_dssp CEET------TEECEEEESEECC--
T ss_pred CEEC------CEEEEEEEecCCCCC
Confidence 9885 568999999887753
No 88
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=1.3e-11 Score=93.97 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=68.8
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
+..+||.|.|||..+|+++|+++|.+ +|.+..+.+..+ .|||||.|.+.++|.++++.+||
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g 75 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDR-------------FGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRG 75 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHT-------------TSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCC
Confidence 34579999999999999999999998 677777777654 68999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccCcC
Q 037791 194 YKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQG 216 (295)
..+.. ..+.+.|.||+.+.
T Consensus 76 ~~~~~----~g~~l~V~~a~~~~ 94 (97)
T 1why_A 76 FPLGG----PDRRLRVDFAKSGP 94 (97)
T ss_dssp CBCSS----SSCBCEEEECCCCC
T ss_pred CEeCC----CCcEEEEEECCCCC
Confidence 98852 24578999998764
No 89
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.31 E-value=7.2e-12 Score=101.21 Aligned_cols=82 Identities=24% Similarity=0.424 Sum_probs=75.6
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
.+||+|+|||..+|+++|+++|.. +|.+..+.+..|..++.+.|||||.|.+.++|.++++.+||..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 69 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRA-------------IGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGIT 69 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHT-------------TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCE
Confidence 579999999999999999999987 7889999999999999999999999999999999999999998
Q ss_pred ccccCCCCCceEEEEeccCcC
Q 037791 196 WEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAriQG 216 (295)
+. ++.+.|.||..++
T Consensus 70 ~~------g~~l~v~~~~~~~ 84 (168)
T 1b7f_A 70 VR------NKRLKVSYARPGG 84 (168)
T ss_dssp ET------TEECEEEECCCCS
T ss_pred eC------CcEEEEEecCCCc
Confidence 85 4578999998665
No 90
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=8.4e-12 Score=97.99 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=73.4
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+.++.|.. .+.|||||.|.+.++|.++++.+|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~ 90 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQ-------------FGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLH 90 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGG-------------TCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHh-------------cCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcC
Confidence 455779999999999999999999987 78888899999853 388999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. ++.+.|.||+.+.
T Consensus 91 g~~~~------g~~l~V~~a~~~~ 108 (109)
T 2err_A 91 GTVVE------GRKIEVNNATARV 108 (109)
T ss_dssp TCEET------TEECEEEECCCSC
T ss_pred CCEEC------CEEEEEEECCCCc
Confidence 99985 5689999998653
No 91
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=6.3e-12 Score=97.87 Aligned_cols=82 Identities=16% Similarity=0.140 Sum_probs=72.3
Q ss_pred cCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 111 AMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 111 ~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
......+||.|.|||..+|+++|+++|.. +|.+..+.|..| .|||||.|.+.++|.++++.
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~-------------~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSP-------------FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHH-------------HSCEEEEEEETT------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHH
Confidence 34566789999999999999999999998 678888888877 69999999999999999999
Q ss_pred hcCCcccccCCCCCceEEEEeccCcCh
Q 037791 191 CNKYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 191 fnG~~w~~~~~gS~KiceVsyAriQGk 217 (295)
+||..|. .+.+.|.||+.+..
T Consensus 81 l~g~~~~------g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 81 VNGTTIE------GHVVKCYWGKESPD 101 (109)
T ss_dssp HTTCEET------TEECEEECCCCCCS
T ss_pred cCCCEEC------CcEEEEEecCCCCC
Confidence 9999885 56899999987753
No 92
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=99.30 E-value=6.9e-12 Score=99.55 Aligned_cols=86 Identities=20% Similarity=0.331 Sum_probs=74.4
Q ss_pred cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEe-cccccCCc-ceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYL-PMDFRRRA-NLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYL-PiDf~t~~-N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
|.|.||+||..+|+++|.++|+. ..++||+|. +-+...+. -.+.|||||++.+++..|.+.|+|+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~-------------~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQP-------------MPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCS-------------CCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcC-------------cccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 78999999999999999999987 457888864 55555443 3499999999999999999999999
Q ss_pred cccccCCCCCceEEEEeccCcC
Q 037791 195 KWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQG 216 (295)
.|.+.+ |..-.+.|+||..|.
T Consensus 69 ~F~D~k-g~~~~a~VE~AP~qk 89 (91)
T 1uw4_A 69 VFLDNK-GQEYPAIVEFAPFQK 89 (91)
T ss_dssp EEECTT-CCEEECEEEECSSCC
T ss_pred EEEcCC-CCEeeeEEEEcCCCc
Confidence 999887 667789999999996
No 93
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.29 E-value=1.3e-11 Score=98.57 Aligned_cols=92 Identities=16% Similarity=0.122 Sum_probs=77.3
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCC---ccEEEecccccCCcceeeEEEecCCHHHHHHHHH
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSE---FDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWK 189 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~---YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~ 189 (295)
.+..+||.|+|||...|+++|+++|.. +|. +..+.|+.|.. +.++|||||.|.+.++|.++++
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSD-------------CTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTT-------------SCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHH-------------cCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh
Confidence 455789999999999999999999987 455 78899999977 8899999999999999999999
Q ss_pred HhcCCcccccCCCCCceEEEEeccCcChHHHHHHhc
Q 037791 190 ACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFE 225 (295)
Q Consensus 190 ~fnG~~w~~~~~gS~KiceVsyAriQGk~aLv~hFr 225 (295)
+||+.+. .+.++|.+|..+..+...++.+
T Consensus 80 -~~g~~~~------gr~i~V~~a~~~~~~~~~~~~~ 108 (118)
T 2db1_A 80 -KDRESMG------HRYIEVFKSHRTEMDWVLKHSG 108 (118)
T ss_dssp -GTTEEET------TEEEEEEEECHHHHHHHHHTTS
T ss_pred -cCCCeEC------CeEEEEEECCHHHHHHHHHHhC
Confidence 9998875 5589999997655555555444
No 94
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=5.4e-12 Score=100.74 Aligned_cols=85 Identities=9% Similarity=0.076 Sum_probs=72.5
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+.+.+|..++.+.|||||.|.+.++|.++++ +|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~ 87 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKK-------------LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RH 87 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCS-------------SCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hC
Confidence 345689999999999999999999987 5666555566677789999999999999999999999 99
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|+.+. .+.+.|.||..+..
T Consensus 88 g~~~~------gr~i~V~~a~~~~~ 106 (124)
T 1wel_A 88 KQYMG------NRFIQVHPITKKGM 106 (124)
T ss_dssp SBCST------TSCBEEEEECHHHH
T ss_pred CCeEC------CcEEEEEECCHHHH
Confidence 98885 45789999987654
No 95
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.28 E-value=1.3e-11 Score=93.48 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=68.3
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+ ..++.+.|||||.|.+.++|.++++.+|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~-------------~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~ 74 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFED-------------ALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ 74 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCS-------------EEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhh-------------CCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 345789999999999999999999987 3444333 4567889999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|..|. ++.+.|.||+.++.
T Consensus 75 g~~~~------g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 75 GAEID------GRSVSLYYTGEKGG 93 (96)
T ss_dssp EEEET------TEEEEEEECSSSCC
T ss_pred CCEEC------CeEEEEEEcCCCCC
Confidence 99885 56899999987653
No 96
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.28 E-value=1.7e-11 Score=99.06 Aligned_cols=82 Identities=21% Similarity=0.187 Sum_probs=74.6
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...++|.|+|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~-------------~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGK-------------YGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTS-------------SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhc-------------CCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 45679999999999999999999987 78899999999998999999999999999999999999999
Q ss_pred CcccccCCCCCceEEEEec
Q 037791 194 YKWEVEAPGNKKMCEIACA 212 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyA 212 (295)
..+. |..+.+.|.||
T Consensus 154 ~~~~----g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPE----GGSQPLSVRLA 168 (168)
T ss_dssp CCCT----TCSSCCEEEEC
T ss_pred CEec----CCCeEEEEEeC
Confidence 9885 24568899987
No 97
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.7e-11 Score=92.18 Aligned_cols=78 Identities=13% Similarity=0.210 Sum_probs=68.5
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+.++ .|||||.|.+.++|.++++.+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~ 63 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQ-------------YGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLH 63 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHT-------------SSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHh-------------CCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhc
Confidence 455789999999999999999999998 6778777776 5899999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|..+. .+.+.|.||+.+..
T Consensus 64 g~~~~------g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 64 HYKLH------GVNINVEASKNKSK 82 (90)
T ss_dssp TCBCS------SCBCEEECSSCCCC
T ss_pred CCccC------CcEEEEEECCCCCC
Confidence 99885 45789999987654
No 98
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.28 E-value=8.9e-12 Score=98.62 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=74.6
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
..+||.|.|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.+++ .+||+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~ 100 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSS-------------CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET 100 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHT-------------TSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC
Confidence 4679999999999999999999997 788999999999989999999999999999999999 89999
Q ss_pred cccccCCCCCceEEEEeccCcC
Q 037791 195 KWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQG 216 (295)
.+. ++.+.|.||+.+.
T Consensus 101 ~~~------g~~l~V~~a~~~~ 116 (124)
T 2jwn_A 101 VFR------GRTIKVLPKRTNM 116 (124)
T ss_dssp EET------TEECEEEESSCCC
T ss_pred eEC------CeEEEEEECCCCC
Confidence 985 5689999998653
No 99
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.28 E-value=1.7e-11 Score=98.30 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=74.0
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...++|.|+|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~-------------~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 152 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQ-------------YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 152 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHh-------------cCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC
Confidence 34679999999999999999999997 68899999999998999999999999999999999999999
Q ss_pred CcccccCCCCCceEEEEec
Q 037791 194 YKWEVEAPGNKKMCEIACA 212 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyA 212 (295)
..+. |....+.|.||
T Consensus 153 ~~~~----g~~~~i~v~~A 167 (167)
T 1fxl_A 153 QKPS----GATEPITVKFA 167 (167)
T ss_dssp CCCT----TCSSCCEEEEC
T ss_pred CccC----CCccceEEEeC
Confidence 9886 24456899997
No 100
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.27 E-value=8.6e-12 Score=94.35 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=71.3
Q ss_pred CCCccEEEEcCCCCccCHHHHH----HHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHH
Q 037791 113 LGENTTLMIRNIPNNLKRRDLL----HILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFW 188 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll----~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~ 188 (295)
....+||.|+|||..+|+++|+ ++|.. +|.+..+.++ .++.+.|||||.|.+.++|.+++
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~-------------~G~i~~v~i~---~~~~~~g~afV~f~~~~~A~~A~ 68 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSR-------------FGQILDILVS---RSLKMRGQAFVIFKEVSSATNAL 68 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGG-------------GSCEEEEECC---HHHHHTTCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-------------CCCEEEEEEE---cCCCcCcEEEEEeCCHHHHHHHH
Confidence 3456799999999999999999 77766 6777777776 35678899999999999999999
Q ss_pred HHhcCCcccccCCCCCceEEEEeccCcChH
Q 037791 189 KACNKYKWEVEAPGNKKMCEIACADIQGRD 218 (295)
Q Consensus 189 ~~fnG~~w~~~~~gS~KiceVsyAriQGk~ 218 (295)
+.+||..+. ++.+.|.||+.+...
T Consensus 69 ~~l~g~~~~------g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 69 RSMQGFPFY------DKPMRIQYAKTDSDI 92 (97)
T ss_dssp HHHTTCEET------TEECEEEECSSCCTH
T ss_pred HHhCCCEEC------CcEEEEEEccCCCcc
Confidence 999999884 568999999987654
No 101
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=2.3e-11 Score=92.95 Aligned_cols=79 Identities=13% Similarity=0.246 Sum_probs=69.1
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||+|.|||..+|+++|+++|.+ +|.+..+.++.| +|||||.|.+.++|.++++.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~ 72 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEK-------------YGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELD 72 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTST-------------TCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhh-------------cCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhC
Confidence 344679999999999999999999987 678888888754 6999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|+.+. .+.+.|.||+.+.
T Consensus 73 g~~~~------g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 73 NMPLR------GKQLRVRFACHSA 90 (99)
T ss_dssp TCCBT------TBCCEEEESSCCS
T ss_pred CCEeC------CceEEEEEcCCCC
Confidence 99985 4578999998654
No 102
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=9.5e-12 Score=98.20 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=73.2
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCc-cEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEF-DFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~Y-DFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
....+||.|+|||..+|+++|+++|.. +|.. +.+.|+.|. ++.+.|||||.|.+.++|.++++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~- 76 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEG-------------IPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL- 76 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTT-------------SCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHh-------------CCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-
Confidence 345679999999999999999999987 5777 789999998 899999999999999999999988
Q ss_pred cCCcccccCCCCCceEEEEeccCcC
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQG 216 (295)
||+.+. .+.+.|.||..+-
T Consensus 77 ~~~~~~------gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 77 HRKKLN------GREAFVHVVTLED 95 (114)
T ss_dssp CSEEET------TEEEEEEEECHHH
T ss_pred CCCccC------CeEEEEEECCHHH
Confidence 998875 5689999997543
No 103
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.27 E-value=6.9e-12 Score=95.99 Aligned_cols=83 Identities=14% Similarity=0.105 Sum_probs=70.6
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|..++. ... .+.+|..++.++|||||.|.+.++|.++++ +|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-------------v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~ 78 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFA-------------KND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT 78 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHH-------------HHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCC-------------cce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cC
Confidence 345679999999999999999999998543 333 567888889999999999999999999999 99
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. .+.+.|.||+.+.
T Consensus 79 g~~~~------g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 79 GLKVF------GNEIKLEKPKGRD 96 (101)
T ss_dssp GCCBT------TBCCEEECCSCCC
T ss_pred CcEEC------CcEEEEEEcCCCC
Confidence 99986 4578999998654
No 104
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.27 E-value=5.9e-12 Score=91.08 Aligned_cols=75 Identities=16% Similarity=0.329 Sum_probs=66.5
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
||.|+|||..+|+++|+++|.+ +|.+..+.++.|..++.+.|||||.|.+.++|.++++. +|+.+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~ 66 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGG-------------FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG 66 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHH-------------HSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBT
T ss_pred CEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 6899999999999999999998 67888899999999999999999999999999999985 777764
Q ss_pred ccCCCCCceEEEEec
Q 037791 198 VEAPGNKKMCEIACA 212 (295)
Q Consensus 198 ~~~~gS~KiceVsyA 212 (295)
++.+.|.+|
T Consensus 67 ------g~~l~v~~a 75 (75)
T 1iqt_A 67 ------LSKCEIKVA 75 (75)
T ss_dssp ------TBCCCEEEC
T ss_pred ------CEEEEEEEC
Confidence 446677765
No 105
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.3e-11 Score=94.39 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=67.6
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|.+ +|.+..+.+. .+.|||||.|.+.++|.++++.+|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~-------------~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~ 84 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQN-------------FGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALA 84 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHT-------------TSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHh-------------CCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhC
Confidence 344689999999999999999999998 6777777776 457999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCc
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQ 215 (295)
|..|. ++.+.|.||+.+
T Consensus 85 g~~~~------g~~l~V~~a~~~ 101 (101)
T 2la4_A 85 NFPFQ------GRNLRTGWGKER 101 (101)
T ss_dssp TCEET------TEECCCCBCCCC
T ss_pred CCeEC------CeEEEEEeccCC
Confidence 99985 457899999754
No 106
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.26 E-value=2.2e-11 Score=95.24 Aligned_cols=80 Identities=14% Similarity=0.174 Sum_probs=70.5
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||.|+|||..+|+++|.++|.. +|.+..+.++.|- .+.|||||.|.+.++|.++++.+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~ 68 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGK-------------YGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLS 68 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcC
Confidence 445679999999999999999999997 7888889998764 348999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccC
Q 037791 193 KYKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAri 214 (295)
|..+. ++.+.|.||+.
T Consensus 69 g~~~~------g~~l~v~~a~~ 84 (115)
T 3lqv_A 69 GFNVS------NRYLVVLYYNA 84 (115)
T ss_dssp TCBSS------SCBCEEEECCH
T ss_pred CCEEC------CeEEEEEEecC
Confidence 99985 45789999985
No 107
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3e-11 Score=92.17 Aligned_cols=80 Identities=18% Similarity=0.198 Sum_probs=66.6
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|.+ +|.+. +.+. ++.+.|||||.|.+.++|.++++.+|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~-------------~G~v~-~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~ 77 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRE-------------LGSVP-LRLT----WQGPRRRAFLHYPDSAAAQQAVSCLQ 77 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHH-------------TTCCC-SEEE----EETTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHh-------------cCCEE-EEEE----cCCCCcEEEEEECCHHHHHHHHHHhC
Confidence 455779999999999999999999998 45554 2333 24678999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. .+.+.|.||+.+.
T Consensus 78 g~~~~------g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 78 GLRLG------TDTLRVALARQQR 95 (97)
T ss_dssp TCCSS------SSCCEEEECCCCC
T ss_pred CCEEC------CcEEEEEEcCCCC
Confidence 99985 4578999998765
No 108
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.26 E-value=2.4e-11 Score=102.15 Aligned_cols=83 Identities=12% Similarity=0.211 Sum_probs=76.2
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...++|.|+|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~-------------~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g 189 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEA-------------FGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL 189 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTT-------------SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhc-------------cCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccC
Confidence 45679999999999999999999987 78999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccCc
Q 037791 194 YKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQ 215 (295)
..+. ++.+.|.||...
T Consensus 190 ~~~~------g~~i~V~~a~~~ 205 (216)
T 2qfj_A 190 FDLG------GQYLRVGKAVTP 205 (216)
T ss_dssp CBCS------SSBCEEEECSSC
T ss_pred CEeC------CcEEEEEEecCC
Confidence 9885 457899999865
No 109
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.25 E-value=7.9e-12 Score=98.23 Aligned_cols=85 Identities=9% Similarity=0.149 Sum_probs=74.1
Q ss_pred CCCccEEEEcCCCCccCHHHHH---HHHhhhchhhhhcccCccCCCccEEEecccccC---CcceeeEEEecCCHHHHHH
Q 037791 113 LGENTTLMIRNIPNNLKRRDLL---HILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRR---RANLGYAFVNFTTAAGALR 186 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll---~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t---~~N~GYAFVNF~spedA~~ 186 (295)
....+||.|.|||..+|+++|+ ++|.. +|.+..+.++.|..+ +.+.|||||.|.+.++|.+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~-------------~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~ 78 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGK-------------FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALR 78 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTT-------------TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHH
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhc-------------cCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHH
Confidence 3447799999999999999999 88877 788999999988764 4566999999999999999
Q ss_pred HHHHhcCCcccccCCCCCceEEEEeccCcC
Q 037791 187 FWKACNKYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 187 F~~~fnG~~w~~~~~gS~KiceVsyAriQG 216 (295)
+++.+||+.+. .+.+.|.||+.+.
T Consensus 79 Ai~~lng~~~~------gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 79 AIQCVNNVVVD------GRTLKASLGTTKY 102 (111)
T ss_dssp HHHHHTTEEET------TEEEEEESCCCCS
T ss_pred HHHHhCCCEEC------CEEEEEEeccccc
Confidence 99999999985 5689999998764
No 110
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.25 E-value=1.9e-11 Score=99.38 Aligned_cols=81 Identities=20% Similarity=0.212 Sum_probs=74.3
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...++|.|+|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~-------------~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTS-------------FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 158 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHT-------------TSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTT
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHh-------------cCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 34689999999999999999999997 78899999999998999999999999999999999999999
Q ss_pred CcccccCCCCCceEEEEecc
Q 037791 194 YKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAr 213 (295)
..+. ++.+.|.||.
T Consensus 159 ~~~~------g~~l~V~~As 172 (172)
T 2g4b_A 159 MQLG------DKKLLVQRAS 172 (172)
T ss_dssp CEET------TEECEEEECC
T ss_pred CEEC------CeEEEEEeCC
Confidence 9885 5688999983
No 111
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.24 E-value=1.1e-11 Score=110.34 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=77.0
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCC--CccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS--EFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G--~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
..|||.|.|||..+|+++|+++|.. +| .+..+.|+.|..++.++|||||.|.+.++|.++++.+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~-------------~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ln 133 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHS-------------LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 133 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHT-------------TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTST
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-------------HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 5789999999999999999999987 67 88999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcChHH
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGRDA 219 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk~a 219 (295)
|+.|. .+.+.|.||+.|....
T Consensus 134 g~~~~------Gr~l~V~~a~~~~~~~ 154 (229)
T 3q2s_C 134 KRELH------GQNPVVTPVNKQFLSQ 154 (229)
T ss_dssp TSCBT------TBCCEEEECCHHHHHH
T ss_pred CCeEC------CEEeEEEECCCCccch
Confidence 99985 5579999998776543
No 112
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=2.2e-11 Score=91.86 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=65.7
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCC-ccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSE-FDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~-YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
.+..+||.|.|||..+|+++|+++|.. +|. .+.+.+ .+.|||||.|.+.++|.++++.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l 64 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGD-------------RKLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETL 64 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHH-------------TTCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHH-------------cCCceEEEEE-------cCCCEEEEEECCHHHHHHHHHHc
Confidence 345689999999999999999999998 455 555554 25799999999999999999999
Q ss_pred cC-CcccccCCCCCceEEEEeccCcC
Q 037791 192 NK-YKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 192 nG-~~w~~~~~gS~KiceVsyAriQG 216 (295)
|| ..+. .+.+.|.||+.+.
T Consensus 65 ~g~~~~~------g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 65 SGKVELH------GKIMEVDYSVSKK 84 (93)
T ss_dssp TTTCEET------TEECEEEECCCCC
T ss_pred cCCeeEC------CEEEEEEEccCcc
Confidence 99 7774 5689999998764
No 113
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.24 E-value=3.5e-11 Score=97.53 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=74.7
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCC--cceeeEEEecCCHHHHHHHHHHhc
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRR--ANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~--~N~GYAFVNF~spedA~~F~~~fn 192 (295)
+.+||.|+|||..+|+++|+++|.. +|.+..+.++.|..++ .+.|||||.|.+.++|.++++.+|
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 68 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQ-------------YGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALH 68 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHh-------------CCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 4679999999999999999999997 7889999999999887 899999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCc
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQ 215 (295)
|..+... ..+.+.+.++..+
T Consensus 69 ~~~~~~~---~~~~~~~~~~~~~ 88 (175)
T 3nmr_A 69 NMKVLPG---MHHPIQMKPADSE 88 (175)
T ss_dssp TTCCCTT---CSSCCEEEECGGG
T ss_pred CcEEccC---CccceEEcccccc
Confidence 9887532 3567778877644
No 114
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=6e-11 Score=90.62 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=67.7
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|..++ .|.+..+.++ .|||||.|.+.++|.++++.+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-----------~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~ 72 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIK-----------PGAVERVKKI--------RDYAFVHFSNREDAVEAMKALN 72 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTS-----------TTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHS
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcC-----------CcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhC
Confidence 44568999999999999999999999842 1666666654 5899999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|..+. .+.+.|.||+.+.+
T Consensus 73 g~~~~------g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 73 GKVLD------GSPIEVTLAKPVDK 91 (99)
T ss_dssp SEEET------TEEEEEECCCCCCC
T ss_pred CCEeC------CcEEEEEECCCCCC
Confidence 99885 56899999987654
No 115
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.23 E-value=2.3e-11 Score=95.71 Aligned_cols=85 Identities=15% Similarity=0.170 Sum_probs=71.6
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
..+..+||.|.|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~-------------~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQ-------------FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHc-------------cCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 3456789999999999999999999987 788999999999999999999999999999999999986
Q ss_pred cCCcccccCCCCCceEEEEeccCcC
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. ++.+.|.||..+.
T Consensus 88 -~~~l~------g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 88 -RHELD------SKTIDPKVAFPRR 105 (109)
T ss_dssp -CEEET------TEEEEEEECCCCC
T ss_pred -CCcCC------CEEEEEEEccCCC
Confidence 45553 5688999997653
No 116
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.23 E-value=3.8e-11 Score=94.64 Aligned_cols=78 Identities=19% Similarity=0.323 Sum_probs=68.9
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|.. +|.+..+.+. .|||||.|.+.++|.++++.+|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~-------------~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~ 86 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGP-------------FGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVH 86 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTT-------------TSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-------------cCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcC
Confidence 455789999999999999999999987 6778878776 6999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|..+. ++.+.|.||+.+.+
T Consensus 87 g~~~~------g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 87 GKSFA------NQPLEVVYSKLPAK 105 (108)
T ss_dssp TCEET------TEECEEESCSCCC-
T ss_pred CCEEC------CeEEEEEEecCCCC
Confidence 99984 56899999998764
No 117
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.23 E-value=4.1e-11 Score=92.38 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=67.9
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+.++ .|||||.|.+.++|.++++.+|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-------------~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~ 66 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQ-------------FGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMN 66 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHH-------------HSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHC
Confidence 455689999999999999999999998 5677777776 4699999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|+.+. .+.+.|.||+.+..
T Consensus 67 g~~~~------g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 67 GKDLE------GENIEIVFAKPPDQ 85 (103)
T ss_dssp TEEET------TEEEEEEECCCCCC
T ss_pred CCccC------CCEEEEEEcCCCcc
Confidence 99885 56899999987654
No 118
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.22 E-value=4e-11 Score=99.55 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=78.2
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....++|.|+|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+|
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~-------------~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 177 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTS-------------FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN 177 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHT-------------BSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-------------cCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcC
Confidence 356789999999999999999999997 7889999999999899999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|..+. ++.+.|.||+..++
T Consensus 178 g~~~~------g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 178 GMQLG------DKKLLVQRASVGAK 196 (198)
T ss_dssp TCEET------TEECEEEESCCCCC
T ss_pred CCEEC------CEEEEEEECCCCCC
Confidence 99885 56899999987653
No 119
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.22 E-value=3.3e-11 Score=93.79 Aligned_cols=80 Identities=18% Similarity=0.312 Sum_probs=70.5
Q ss_pred CCCccEEEEcCCCCcc------CHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHH
Q 037791 113 LGENTTLMIRNIPNNL------KRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALR 186 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~------Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~ 186 (295)
.+..+||.|.|||... |+++|+++|.. +|.+..+.|+ ..++.++|||||.|.+.++|.+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-------------~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~ 76 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-------------FGKITNDFYP--EEDGKTKGYIFLEYASPAHAVD 76 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGG-------------GSCEEEEECC--CBTTBSCCEEEEEECSSSHHHH
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhc-------------CCCEEEEEee--CCCCCeeeEEEEEECCHHHHHH
Confidence 3446899999999999 78999999987 6888888888 3678899999999999999999
Q ss_pred HHHHhcCCcccccCCCCCc-eEEEEecc
Q 037791 187 FWKACNKYKWEVEAPGNKK-MCEIACAD 213 (295)
Q Consensus 187 F~~~fnG~~w~~~~~gS~K-iceVsyAr 213 (295)
+++.+||+.|. ++ .+.|.||.
T Consensus 77 Ai~~l~g~~~~------g~~~l~V~~a~ 98 (105)
T 2nlw_A 77 AVKNADGYKLD------KQHTFRVNLFT 98 (105)
T ss_dssp HHHHCSSEECS------TTCEEEEECSC
T ss_pred HHHHhCCcccC------CCceEEEEEcc
Confidence 99999999985 44 78999986
No 120
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.22 E-value=5.3e-11 Score=92.84 Aligned_cols=81 Identities=11% Similarity=0.194 Sum_probs=70.1
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...++|.|.|||..+|+++|+++|.+ +|.+..+.|+.| |||||.|.+.++|.++++.+||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g 72 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMRE-------------AGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDN 72 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGG-------------GSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCc
Confidence 34679999999999999999999997 678888999887 9999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccCc
Q 037791 194 YKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQ 215 (295)
+.+.... +..+.+.|.||+..
T Consensus 73 ~~~~g~~-~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 73 TKFRSHE-GETAYIRVKVDGPR 93 (108)
T ss_dssp EEEECTT-SCEEEEEEEESSCC
T ss_pred CCccCCc-CcceEEEEEeCCCC
Confidence 9987311 13378999999863
No 121
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=96.41 Aligned_cols=94 Identities=11% Similarity=0.134 Sum_probs=76.3
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
..+..++|.|+|||...|+++|+++|..++ ..|.+..+.|+.|.. +.+.|||||.|.+.++|.++++ +
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g----------~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~ 74 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCR----------IRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-K 74 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSC----------BTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-T
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcC----------CcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-h
Confidence 356678999999999999999999999732 123378899999987 8899999999999999999999 9
Q ss_pred cCCcccccCCCCCceEEEEeccCcChHHHHHH
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQGRDALEKH 223 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQGk~aLv~h 223 (295)
||..+. .+.+.|.+|..+......++
T Consensus 75 ~~~~~~------gr~i~V~~a~~~~~~~~~~~ 100 (107)
T 2lmi_A 75 HRMYMG------QRYVEVYEINNEDVDALMKS 100 (107)
T ss_dssp TTCCSS------SSCCCCEECCHHHHHHHHHT
T ss_pred CcceeC------CeEEEEEECCHHHHHHHHHh
Confidence 998764 44688999876554444443
No 122
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=9.4e-11 Score=88.43 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=68.1
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+.++. |||||.|.+.++|.++++.+|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~ 65 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEE-------------YGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLD 65 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHT-------------TSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhC
Confidence 455789999999999999999999998 67888888773 499999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|+.+. .+.+.|.||+.+.
T Consensus 66 g~~~~------g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 66 NTEFQ------GKRMHVQLSTSRL 83 (92)
T ss_dssp TEEET------TEEEEEEESSCCC
T ss_pred CCeeC------CcEEEEEEccCCC
Confidence 99985 5689999998654
No 123
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.21 E-value=5.9e-11 Score=96.15 Aligned_cols=82 Identities=23% Similarity=0.168 Sum_probs=72.6
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...++|.|+|||..+|+++|+++|.. +|.+..+.++.|. ++.+.|||||.|.+.++|.++++.+||
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~-------------~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSS-------------FGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHh-------------CCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 35679999999999999999999987 6889999999985 588899999999999999999999999
Q ss_pred CcccccCCCCCceEEEEec
Q 037791 194 YKWEVEAPGNKKMCEIACA 212 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyA 212 (295)
..+.. |+.+.+.|.||
T Consensus 159 ~~~~~---g~~~~l~V~~a 174 (175)
T 3nmr_A 159 AQTME---GCSSPMVVKFA 174 (175)
T ss_dssp SCCCT---TCSSCCEEEEC
T ss_pred CcccC---CCCCCeEEEec
Confidence 87652 34578899998
No 124
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.21 E-value=3.5e-11 Score=95.09 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=66.8
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
..+||.|+|||..+|+++|+++|.. +|.+..+.|+. +.|||||.|.+.++|.++++.+||+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~-------------~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~ 69 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSR-------------FGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYS 69 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 3689999999999999999999997 68888888873 5699999999999999999999999
Q ss_pred cccccCCCCCceEEEEeccC
Q 037791 195 KWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAri 214 (295)
.+. .+.+.|.||+.
T Consensus 70 ~~~------g~~l~V~~a~~ 83 (111)
T 1whx_A 70 KFH------HVPLYLEWAPI 83 (111)
T ss_dssp BSS------SSBCEEEEEET
T ss_pred EEC------CeEEEEEECCC
Confidence 985 45789999974
No 125
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=3.5e-11 Score=93.48 Aligned_cols=83 Identities=18% Similarity=0.259 Sum_probs=71.5
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccE-EEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDF-LYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDF-lYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
.+..++|.|+|||...|+++|+++|.. +|.+.. +.|+.| .++.+.|||||.|.++++|.++++.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~- 76 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSG-------------LEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK- 76 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTT-------------CCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-
Confidence 455789999999999999999999987 566665 889999 8899999999999999999999998
Q ss_pred cCCcccccCCCCCceEEEEeccCcC
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQG 216 (295)
||..+. .+.++|.+|..+.
T Consensus 77 ~~~~~~------gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 77 HKERIG------HRYIEIFKSSRAE 95 (104)
T ss_dssp TTCCSS------SSCCEEEEECTTT
T ss_pred CcchhC------CcEEEEEECCHHH
Confidence 888775 3468888887554
No 126
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=3.8e-11 Score=88.73 Aligned_cols=76 Identities=17% Similarity=0.140 Sum_probs=66.1
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh-
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC- 191 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f- 191 (295)
....+||.|.|||..+|+++|+++|.. +|.+..+.++. +.|||||.|.+.++|.++++.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~-------------~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~ 69 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQ-------------FGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSF 69 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHT-------------TSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTT
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHh-------------CCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhc
Confidence 344679999999999999999999997 67788887775 3699999999999999999998
Q ss_pred cCCcccccCCCCCceEEEEecc
Q 037791 192 NKYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAr 213 (295)
||..+. ++.+.|.||+
T Consensus 70 ~~~~~~------g~~l~v~~ak 85 (85)
T 2ytc_A 70 NKLIVN------GRRLNVKWGR 85 (85)
T ss_dssp TTCEET------TEECCEEECC
T ss_pred CCeeEC------CCEEEEEecC
Confidence 998885 4578999986
No 127
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.21 E-value=1e-11 Score=95.66 Aligned_cols=83 Identities=13% Similarity=0.217 Sum_probs=70.9
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccc-cCCcceeeEEEecCCHHHHHHHHHH
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDF-RRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf-~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
.....+||.|+|||..+|+++|+++|.. +| +..+.++.|. .++.+.|||||.|.+.++|.+++ .
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~ 79 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRG-------------LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-S 79 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCS-------------SC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-H
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHh-------------cC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-h
Confidence 3566789999999999999999999987 67 8899999998 58999999999999999999999 9
Q ss_pred hcCCcccccCCCCCceEEEEeccCc
Q 037791 191 CNKYKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 191 fnG~~w~~~~~gS~KiceVsyAriQ 215 (295)
+||..+. ++.+.|.||+..
T Consensus 80 l~g~~~~------g~~l~V~~a~~~ 98 (100)
T 2j76_E 80 LNEESLG------NRRIRVDVADQA 98 (100)
T ss_dssp TTTCCBT------TBCCCCEECCCS
T ss_pred cCCCEEC------CeEEEEEeccCC
Confidence 9999885 456889998754
No 128
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.84 E-value=1.3e-12 Score=102.78 Aligned_cols=85 Identities=13% Similarity=0.129 Sum_probs=74.6
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccE--------EEecccccCCcceeeEEEecCCHHHH
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDF--------LYLPMDFRRRANLGYAFVNFTTAAGA 184 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDF--------lYLPiDf~t~~N~GYAFVNF~spedA 184 (295)
....+||.|.|||..+|+++|+++|.. +|.+.. +.++.|..++.+.|||||.|.+.++|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A 70 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQ-------------IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSA 70 (116)
Confidence 345679999999999999999999998 455555 88999999999999999999999999
Q ss_pred HHHHHHhcCCcccccCCCCCceEEEEeccCcC
Q 037791 185 LRFWKACNKYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 185 ~~F~~~fnG~~w~~~~~gS~KiceVsyAriQG 216 (295)
.++++.+||..|. .+.+.|.||+.+.
T Consensus 71 ~~Ai~~l~g~~~~------g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 71 KAAIDWFDGKEFS------GNPIKVSFATRRA 96 (116)
Confidence 9999999999886 4578999998654
No 129
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.20 E-value=4.3e-11 Score=100.65 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=72.9
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...+||+|+|||..+|+++|+++|.. +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+||
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 92 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAP-------------FGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNS 92 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGG-------------GSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSS
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHh-------------CCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccC
Confidence 44679999999999999999999987 68899999999999999999999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccCcC
Q 037791 194 YKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQG 216 (295)
..|. .+.+.|.++..+.
T Consensus 93 ~~~~------g~~l~v~~~~~~~ 109 (216)
T 2qfj_A 93 VMLG------GRNIKVGRPSNIG 109 (216)
T ss_dssp CCCC-------CCCEEECCSCCG
T ss_pred CeeC------CeeEEEecCCCcc
Confidence 9885 3467888876554
No 130
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.20 E-value=1.7e-11 Score=99.63 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=69.5
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEE--Eeccc---ccCCcceeeEEEecCCHHHHHHHH
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFL--YLPMD---FRRRANLGYAFVNFTTAAGALRFW 188 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFl--YLPiD---f~t~~N~GYAFVNF~spedA~~F~ 188 (295)
...+||.|+|||..+|+++|+++|..+ |.+..+ .+++| ..++.+.|||||.|.+.++|.+++
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~-------------G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai 109 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRY-------------VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKAL 109 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGG-------------CCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh-------------CCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHH
Confidence 446899999999999999999999984 444443 23334 357888999999999999999999
Q ss_pred HHhcCCcccccCCCCCceEEEEeccCcC
Q 037791 189 KACNKYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 189 ~~fnG~~w~~~~~gS~KiceVsyAriQG 216 (295)
+.+||..+. ++.+.|.||+.+.
T Consensus 110 ~~lng~~~~------g~~l~V~~a~~~~ 131 (143)
T 3egn_A 110 KEANGYVLF------GKPMVVQFARSAR 131 (143)
T ss_dssp HHHTTBEET------TEECEEEECCCSC
T ss_pred HHhCCCEeC------CcEEEEEECCCCC
Confidence 999999985 5689999998654
No 131
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.19 E-value=5.3e-11 Score=89.50 Aligned_cols=76 Identities=14% Similarity=0.323 Sum_probs=64.9
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
..+||.|+|||..+|+++|+++|.+ + .+..+.++ .+.|||||.|.+.++|.++++.+||.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-------------~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~ 63 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKD-------------Y-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQY 63 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCS-------------S-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhh-------------C-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 4789999999999999999999987 3 45555553 57899999999999999999999999
Q ss_pred cccccCCCCCceEEEEeccCcC
Q 037791 195 KWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQG 216 (295)
.+. ++.+.|.||....
T Consensus 64 ~~~------g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 64 SFR------GKDLIVQLQPTDA 79 (88)
T ss_dssp EET------TEEEEEEECCCCC
T ss_pred eEC------CcEEEEEEcCCCc
Confidence 985 5689999997543
No 132
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=3.7e-11 Score=96.83 Aligned_cols=81 Identities=11% Similarity=0.089 Sum_probs=70.0
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||.++|+++|+++|.+ +|.+..+.|..| +|||||.|.+.++|.++++.++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~-------------fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~ 73 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLP-------------FGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYT 73 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHH-------------HCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhc
Confidence 455789999999999999999999998 688888998876 6999999999999999999997
Q ss_pred CC--cccccCCCCCceEEEEeccCcChH
Q 037791 193 KY--KWEVEAPGNKKMCEIACADIQGRD 218 (295)
Q Consensus 193 G~--~w~~~~~gS~KiceVsyAriQGk~ 218 (295)
|. .+. ++.+.|.||+.|...
T Consensus 74 ~~~~~l~------Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 74 SVTPVLR------GQPIYIQFSNHKELK 95 (105)
T ss_dssp TSCCEET------TEECCBCCCSSSSCC
T ss_pred cCCceEC------CEEEEEEEcCCCCCC
Confidence 64 442 568999999987653
No 133
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=4.5e-11 Score=94.16 Aligned_cols=77 Identities=21% Similarity=0.297 Sum_probs=69.6
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
.+||.|.|||...|+++|+++|.. +|.+..+.|+.|.. +.++|||||.|.+.++|..+++ +||+.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~-------------~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~ 75 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLED-------------KGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQK 75 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHT-------------SSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHhh-------------cCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCE
Confidence 468999999999999999999997 78999999999987 8899999999999999999999 89988
Q ss_pred ccccCCCCCceEEEEecc
Q 037791 196 WEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAr 213 (295)
+. ++.+.|.|+.
T Consensus 76 ~~------gr~l~V~~~~ 87 (103)
T 1s79_A 76 YK------ETDLLILFKD 87 (103)
T ss_dssp CT------TTTCEEEEHH
T ss_pred EC------CEEEEEEEch
Confidence 75 4467888874
No 134
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.18 E-value=1.1e-10 Score=89.93 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=67.6
Q ss_pred CCCccEEEEcCCCC-ccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 113 LGENTTLMIRNIPN-NLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 113 ~d~RTTVMIRNIPN-k~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
....+||.|.|||. .+|+++|+++|.. +|.+..+.++ .|||||.|.+.++|.++++.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~-------------~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l 77 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSP-------------YGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXE 77 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGG-------------GSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh-------------cCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHc
Confidence 45578999999998 9999999999998 6777777773 699999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccCcC
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQG 216 (295)
||..+. ++.+.|.||+.++
T Consensus 78 ~g~~~~------g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 78 SQEMNF------GKKLILEVSSSNA 96 (97)
T ss_dssp TTSEET------TEECEEEECCCCC
T ss_pred CCCEEC------CEEEEEEecCCCC
Confidence 999885 4578999998765
No 135
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.18 E-value=1e-10 Score=100.71 Aligned_cols=83 Identities=20% Similarity=0.226 Sum_probs=74.2
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
..|||.|+|||..+|+++|+++|.+ +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+||.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~-------------~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~ 80 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSP-------------AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 80 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-------------hCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhh
Confidence 4579999999999999999999987 688999999999999999999999999999999999999999
Q ss_pred cccccCCCCCceEEEEeccCcC
Q 037791 195 KWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQG 216 (295)
.+. .+.+.|.++..+.
T Consensus 81 ~~~------g~~i~~~~~~~~~ 96 (213)
T 4f02_A 81 VIK------GKPVRIMWSQRDP 96 (213)
T ss_dssp EET------TEECEEEECCCCT
T ss_pred hcC------Ccccccccccccc
Confidence 875 4567788876544
No 136
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.17 E-value=8.5e-11 Score=96.23 Aligned_cols=81 Identities=12% Similarity=0.152 Sum_probs=71.8
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
.....+||.|.|||..+|+++|+++|.. +|.+..+.++.| +.|||||.|.+.++|..+++.+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~-------------~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l 130 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGY-------------YGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVREL 130 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHH-------------HSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-------------hCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHc
Confidence 3456789999999999999999999998 678888999887 5799999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccCcC
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQG 216 (295)
||..+. ++.+.|.||+.+.
T Consensus 131 ~g~~~~------g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 131 DGRTLC------GCRVRVELSNGEK 149 (150)
T ss_dssp SSSCSS------SSCCEEEECCCCC
T ss_pred CCCEEC------CeEEEEEEcCCCC
Confidence 999874 4578999998764
No 137
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.17 E-value=8.9e-11 Score=94.48 Aligned_cols=80 Identities=14% Similarity=0.202 Sum_probs=68.7
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCC-CccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS-EFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G-~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
.....++|.|+|||...|+++|+++|.+ +| .+.++.+..+ .+.|||||.|.+.++|.++++.
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~-------------~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARE-------------NSLETTFSSVNTR----DFDGTGALEFPSEEILVEALER 86 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHH-------------HTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHH-------------hCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHH
Confidence 3455789999999999999999999998 56 7888877543 3689999999999999999999
Q ss_pred hcCCcccccCCCCCceEEEEeccC
Q 037791 191 CNKYKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 191 fnG~~w~~~~~gS~KiceVsyAri 214 (295)
+||..+. .+.+.|.+|+-
T Consensus 87 lng~~l~------Gr~i~V~~a~~ 104 (111)
T 2jvr_A 87 LNNIEFR------GSVITVERDDN 104 (111)
T ss_dssp TTTEEET------TEEEEEEESCC
T ss_pred cCCCEEC------CeEEEEEECCC
Confidence 9999885 55889999874
No 138
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.17 E-value=7.8e-11 Score=95.26 Aligned_cols=81 Identities=14% Similarity=0.229 Sum_probs=72.9
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
+..++|.|+|||..+|+++|.++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++ ++|
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQ-------------WGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHT-------------TSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHh-------------CccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 34679999999999999999999997 7889999999999999999999999999999999998 788
Q ss_pred CcccccCCCCCceEEEEeccC
Q 037791 194 YKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAri 214 (295)
..+. ++.+.|.||..
T Consensus 151 ~~~~------g~~i~V~~a~p 165 (167)
T 2cjk_A 151 IDFK------DRKIEIKRAEP 165 (167)
T ss_dssp ECSS------SSCEEEEECCC
T ss_pred EEeC------CeEEEEeecCC
Confidence 7774 45789999975
No 139
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=5.7e-11 Score=97.20 Aligned_cols=98 Identities=14% Similarity=0.179 Sum_probs=78.7
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
+..++|+|+|||...|+++|+++|..+|. +.|.++-++|+.| .++.+.|||||.|.+.++|.++++. ||
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~---------v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~ 89 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCP---------ITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HK 89 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSC---------CTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCC---------ccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CC
Confidence 45689999999999999999999998542 1245789999999 5889999999999999999999997 88
Q ss_pred CcccccCCCCCceEEEEeccCcChHHHHHHhcccc
Q 037791 194 YKWEVEAPGNKKMCEIACADIQGRDALEKHFERFK 228 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQGk~aLv~hFrnS~ 228 (295)
+.+. .+.++|..|..+......++.+++.
T Consensus 90 ~~l~------gR~i~V~~a~~~e~~~~~~~~~~~p 118 (123)
T 2dha_A 90 DLLG------KRYIELFRSTAAEVQQVLNRFSSAS 118 (123)
T ss_dssp EESS------SCEECCEEECHHHHHHHHHHHTTCS
T ss_pred CeeC------CeEEEEEECCHHHHHHHHHhccCCC
Confidence 7664 4578899887665555555544443
No 140
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.16 E-value=1.1e-10 Score=96.62 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=72.5
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||.|+|||..+|+++|+++|.. +|.+..+.|..|..++.+.|||||.|.+.++|.++++. +
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~ 75 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQ-------------WGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-R 75 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-C
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------CCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-C
Confidence 455789999999999999999999997 68899999999999999999999999999999999987 7
Q ss_pred CCcccccCCCCCceEEEEeccCc
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQ 215 (295)
|..+. .+.+.|.+|..+
T Consensus 76 ~~~~~------g~~l~v~~~~~~ 92 (196)
T 1l3k_A 76 PHKVD------GRVVEPKRAVSR 92 (196)
T ss_dssp SCEET------TEECEEEECCC-
T ss_pred CCEEC------CEEeeeecccCc
Confidence 77764 457788887644
No 141
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.16 E-value=8.7e-11 Score=97.34 Aligned_cols=83 Identities=13% Similarity=0.185 Sum_probs=71.9
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...++|.|+|||..+|+++|+++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++. +|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~ 167 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQ-------------YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KY 167 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTT-------------TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhc-------------CCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CC
Confidence 34579999999999999999999987 78899999999999999999999999999999999987 78
Q ss_pred CcccccCCCCCceEEEEeccCcC
Q 037791 194 YKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQG 216 (295)
+.+. ++.+.|.||..+.
T Consensus 168 ~~~~------G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 168 HTVN------GHNCEVRKALSKQ 184 (196)
T ss_dssp CEET------TEECEEEECC---
T ss_pred cEEC------CEEEEEEecCChh
Confidence 7764 5679999997654
No 142
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=7.9e-11 Score=93.06 Aligned_cols=82 Identities=11% Similarity=0.137 Sum_probs=67.9
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....++|.|+|||..+|+++|+++|.. +|.+..+.+..| +|||||.|.+.++|..+++.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~-------------fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~ 72 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLP-------------FGKVTNILMLKG------KNQAFLELATEEAAITMVNYYS 72 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTT-------------TSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhc
Confidence 344679999999999999999999987 678888877765 6999999999999999999987
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
+..... .++.+.|.||+.|..
T Consensus 73 ~~~~~~----~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 73 AVTPHL----RNQPIYIQYSNHKEL 93 (101)
T ss_dssp HSCCEE----TTEECEEEECSCSSC
T ss_pred cCCceE----CCcEEEEEEcCcccC
Confidence 543221 367899999997754
No 143
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.15 E-value=3e-10 Score=88.47 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=65.9
Q ss_pred CccEEEEcCCCCc-cCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 115 ENTTLMIRNIPNN-LKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 115 ~RTTVMIRNIPNk-~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
..+||.|.|||.. +|+++|+++|.. +|.+..+.+ +.|||||.|.+.++|.++++.+||
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~-------------~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g 84 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSK-------------YGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENG 84 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGG-------------GSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHh-------------CCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCC
Confidence 4579999999999 999999999998 677777777 579999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccCcC
Q 037791 194 YKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQG 216 (295)
..+. .+.+.|.||+.+.
T Consensus 85 ~~~~------g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 85 RVLA------GQTLDINMAGEPK 101 (110)
T ss_dssp CEET------TEECCEEESCCCC
T ss_pred CEEC------CeEEEEEECCCCC
Confidence 9985 5578999997543
No 144
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=99.15 E-value=3.1e-11 Score=97.19 Aligned_cols=86 Identities=21% Similarity=0.336 Sum_probs=72.0
Q ss_pred cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEE-ecccccCCcce-eeEEEecCCHHHHHHHHHHhcCC
Q 037791 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLY-LPMDFRRRANL-GYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlY-LPiDf~t~~N~-GYAFVNF~spedA~~F~~~fnG~ 194 (295)
-.|.||+||+.+|+++|++.|+.. -+.||+| .+-|...+.+. +.|||||++.+++..|.+.|+|+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~-------------~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~ 76 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPL-------------PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY 76 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCC-------------SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCc-------------CccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence 479999999999999999999862 2357765 55565554443 99999999999999999999999
Q ss_pred cccccCCCCCceEEEEeccCcC
Q 037791 195 KWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQG 216 (295)
.|.+.+ |+.-.+.|+||..|.
T Consensus 77 ~F~D~k-g~~~~a~VE~APyqK 97 (97)
T 2l08_A 77 IFLDSK-GLEYPAVVEFAPFQK 97 (97)
T ss_dssp EEECTT-CCEEEEEEEECCCCC
T ss_pred EEEeCC-CCEeeeEEEecCCCC
Confidence 999887 567789999999984
No 145
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.15 E-value=4.2e-11 Score=91.75 Aligned_cols=80 Identities=13% Similarity=0.166 Sum_probs=69.9
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|.. +|.+..+.++.|. ++.+.|||||.|.+.++|.++++ +
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~ 69 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFAR-------------YGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--S 69 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--C
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------CCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--C
Confidence 344689999999999999999999987 6889999999998 89999999999999999999999 7
Q ss_pred CCcccccCCCCCceEEEEeccC
Q 037791 193 KYKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAri 214 (295)
|+.+. ++.+.|.+|..
T Consensus 70 ~~~~~------g~~l~v~~a~~ 85 (102)
T 2xs2_A 70 QINFH------GKKLKLGPAIR 85 (102)
T ss_dssp CCEET------TEECEEEEEEE
T ss_pred CCeEC------CEEEEEEECCc
Confidence 77764 45677888763
No 146
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.7e-10 Score=86.61 Aligned_cols=77 Identities=14% Similarity=0.158 Sum_probs=67.3
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|||..+|+++|+++|.. +|.+..+.+.. |||||.|.+.++|.++++.+|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~ 64 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFER-------------RGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLN 64 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHH-------------HSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHc-------------CCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhC
Confidence 445789999999999999999999998 57777777763 499999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+. .+.+.|.||+.+.
T Consensus 65 g~~~~------g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 65 GKEVK------GKRINVELSTKGQ 82 (90)
T ss_dssp TCEET------TEECEEEESCCCC
T ss_pred CCEEC------CcEEEEEECCCCC
Confidence 99885 5689999998764
No 147
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=2.1e-10 Score=94.12 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=68.9
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....++|.|+|||.++|+++|+++|.. +|.+..+.|+.| +|||||.|.+.++|.++++.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~-------------fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~ 88 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLP-------------FGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYT 88 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTT-------------TSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhc
Confidence 344679999999999999999999997 788888888876 6999999999999999999998
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|.... + ..+.+.|.||+.|..
T Consensus 89 ~~~~~-l---~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 89 SVTPV-L---RGQPIYIQFSNHKEL 109 (119)
T ss_dssp HHCCC-B---TTBCCEEEECSSSSC
T ss_pred cCCce-E---CCeEEEEEEccCCCC
Confidence 64221 1 256889999987754
No 148
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.4e-10 Score=88.58 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=66.6
Q ss_pred CCCccEEEEcCCCC-ccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 113 LGENTTLMIRNIPN-NLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 113 ~d~RTTVMIRNIPN-k~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
.+..+||.|.|||. .+|+++|+++|.. +|.+..+.++ .|||||.|.+.++|..+++.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~-------------~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l 65 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSP-------------YGHIMQINIK--------NAFGFIQFDNPQSVRDAIECE 65 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTT-------------TCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh-------------cCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHc
Confidence 45578999999998 9999999999997 6778878774 699999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccCcCh
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQGk 217 (295)
||..+. .+.+.|.||+.+..
T Consensus 66 ~g~~~~------g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 66 SQEMNF------GKKLILEVSSSNAR 85 (96)
T ss_dssp TCSSCB------TTTBCEEEEECCCC
T ss_pred CCCeeC------CcEEEEEEcCcCCC
Confidence 999886 34678999976654
No 149
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.13 E-value=1.9e-10 Score=91.17 Aligned_cols=80 Identities=10% Similarity=0.073 Sum_probs=67.3
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
...||.|+|||..+|+++|+++|.. +|.+..+.|..+ +|||||.|.+.++|.++++.++|.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~-------------fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~ 74 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEK-------------FGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADV 74 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTT-------------TSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-------------CCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccC
Confidence 3569999999999999999999997 678888887654 699999999999999999999887
Q ss_pred cccccCCCCCceEEEEeccCcCh
Q 037791 195 KWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQGk 217 (295)
.... ..+.+.|.||+.|..
T Consensus 75 ~~~i----~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 75 PVYI----AGQQAFFNYSTSKRI 93 (104)
T ss_dssp CCBS----SSSBCEEEECSSSSC
T ss_pred CceE----CCEEEEEEEccCccc
Confidence 5321 256889999987653
No 150
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.4e-10 Score=90.72 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=68.8
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....++|.|+|||...|+++|+++|.. +|.. .+.|+.|. ++.++|||||.|.+.++|.++++ +|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~ 75 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSP-------------LNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KD 75 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCS-------------CCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-------------cCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hC
Confidence 344679999999999999999999987 4533 78999997 89999999999999999999995 68
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|+.+. .+.++|.+|...+
T Consensus 76 ~~~~~------gr~i~V~~~~~~~ 93 (102)
T 1wez_A 76 KANMQ------HRYVELFLNSTAG 93 (102)
T ss_dssp SCCSS------SSCCEEEEECCCC
T ss_pred CCeEC------CcEEEEEECCCCC
Confidence 88775 4467888877543
No 151
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.12 E-value=2.5e-10 Score=93.75 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=67.7
Q ss_pred CccEEEEcCCCCccCHHHHHH----HHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 115 ENTTLMIRNIPNNLKRRDLLH----ILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~----ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
..+||.|+|||.+++.++|++ +|.. +|.+.-+.++ .++.++|||||.|.+.++|..+++.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~-------------~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~ 91 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASS-------------QGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEA 91 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHH-------------HSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhcc-------------CCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHH
Confidence 367999999999999999874 5655 6777667664 3567899999999999999999999
Q ss_pred hcCCcccccCCCCCceEEEEeccCcCh
Q 037791 191 CNKYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 191 fnG~~w~~~~~gS~KiceVsyAriQGk 217 (295)
+||+.+. ++.+.|.||+.+..
T Consensus 92 lng~~l~------gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 92 FQGYPFQ------GNPLVITFSETPQS 112 (127)
T ss_dssp STTCCCT------TSCCEEEECCCCCH
T ss_pred HCCCEeC------CCEEEEEEccCcch
Confidence 9999885 45789999997764
No 152
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.11 E-value=1.1e-10 Score=86.31 Aligned_cols=66 Identities=18% Similarity=0.354 Sum_probs=60.2
Q ss_pred cEEEEcCCCCcc------CHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 117 TTLMIRNIPNNL------KRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 117 TTVMIRNIPNk~------Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
+||.|.|||... |+++|+++|.. +|.+..+.++ ..++.++|||||.|.+.++|.++++.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-------------~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSK-------------FGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHT-------------TCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhh-------------cCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 699999999999 78999999987 6888888887 36788999999999999999999999
Q ss_pred hcCCccc
Q 037791 191 CNKYKWE 197 (295)
Q Consensus 191 fnG~~w~ 197 (295)
+||..+.
T Consensus 67 lng~~~~ 73 (81)
T 2krb_A 67 ADGYKLD 73 (81)
T ss_dssp SSSCCCS
T ss_pred hcCcccC
Confidence 9999986
No 153
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.10 E-value=2.7e-10 Score=86.88 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=63.2
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
...-+||.|.|||..+|+++|+++|.+ +|.+..+.|+.| ++|||||.|.++++|. .++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~-------------~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~ 65 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQ-------------YGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLC 65 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhc-------------cCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHc
Confidence 445789999999999999999999997 788999999986 6799999999999997 478
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..+.. ..+.+.|.+|+.+.
T Consensus 66 ~~~~~~----~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 66 GEDLII----KGISVHISNAEPKH 85 (89)
T ss_dssp TCEEEE----TTEEEEEEECC---
T ss_pred CCCccc----CCEEEEEEEcCCCC
Confidence 876542 46789999998654
No 154
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.10 E-value=3e-10 Score=91.67 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=67.1
Q ss_pred cCCccCCcccccccCCccCCCCCCcccccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEec
Q 037791 83 RPLTMRGKVVGHKRNLKWAPKNRDDVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLP 162 (295)
Q Consensus 83 ~p~~~~~~~~~~~r~~~~~p~~~~~~~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLP 162 (295)
++.++|++ +.+|...+.... .....+||.|.|+ .+|+++|+++|.. +|.+..+.+.
T Consensus 15 ~~~~~~d~--~~~r~~~~~~~~-------~~~~~~~lfVgnl--~~te~~L~~~F~~-------------~G~I~~v~i~ 70 (121)
T 2bz2_A 15 VPRGSHMG--PFRRSDSFPERR-------APRKGNTLYVYGE--DMTPTLLRGAFSP-------------FGNIIDLSMD 70 (121)
T ss_dssp -----------------------------CCCCCCEEEEECS--SCCHHHHHHHHST-------------TCCCSCEEEE
T ss_pred cCCCCCCC--CCCCCCCCCCCC-------CCCCCCEEEEcCC--CCCHHHHHHHHHc-------------cCCEEEEEEe
Confidence 45666666 444444333322 3455789999996 6999999999987 6777777774
Q ss_pred ccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEeccCcCh
Q 037791 163 MDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 163 iDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyAriQGk 217 (295)
.+.|||||.|.+.++|.++++.+||..+. .+.+.|.||+.+..
T Consensus 71 ------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~------g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 71 ------PPRNCAFVTYEKMESADQAVAELNGTQVE------SVQLKVNIARKQPM 113 (121)
T ss_dssp ------TTTTEEEEECSSHHHHHHHHHHHTTCBCS------SCBCEEEECCSSCC
T ss_pred ------CCCCEEEEEECCHHHHHHHHHHhCCCEEC------CeEEEEEEeCCCCC
Confidence 46799999999999999999999999884 45789999998764
No 155
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.10 E-value=2.6e-10 Score=91.35 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=69.0
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE 197 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~ 197 (295)
||+|+|||..+|+++|+++|.. +|.+..+.+..|.. +.+.|||||.|.+.++|.++++.+||..+.
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~-------------~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 67 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQV-------------GGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIE 67 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGG-------------GSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEECCCCCcCCHHHHHHHHHh-------------cCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccC
Confidence 7999999999999999999997 68889999999875 568999999999999999999999999985
Q ss_pred ccCCCCCceEEEEeccCc
Q 037791 198 VEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 198 ~~~~gS~KiceVsyAriQ 215 (295)
++.+.|.||..+
T Consensus 68 ------g~~i~v~~~~~~ 79 (166)
T 3md3_A 68 ------NNIVKINWAFQS 79 (166)
T ss_dssp ------TEECEEEECCCC
T ss_pred ------CCeeEEEEcCCC
Confidence 457888888644
No 156
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=1.5e-10 Score=94.59 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=67.4
Q ss_pred CCCccEEEEcC--CCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 113 LGENTTLMIRN--IPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 113 ~d~RTTVMIRN--IPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
.+.-++|.|+| ||..+|+++|+++|.+ +|....++++.| +|||||.|.+.++|.++++.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~-------------fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEK-------------CGLVDALLMPPN------KPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHH-------------HSCEEEEECCTT------CSCEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHh-------------cCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHH
Confidence 34456899966 9999999999999998 678888888753 69999999999999999999
Q ss_pred hcCCcc-cccCCCCCceEEEEecc
Q 037791 191 CNKYKW-EVEAPGNKKMCEIACAD 213 (295)
Q Consensus 191 fnG~~w-~~~~~gS~KiceVsyAr 213 (295)
+||+.+ .... ..+.+-|.||+
T Consensus 83 lnG~~~~~~lg--~g~~l~v~~a~ 104 (114)
T 2cq2_A 83 LNGKEVVDDLG--QKITLYLNFVE 104 (114)
T ss_dssp TTTCEEECTTS--CEEECEEEEES
T ss_pred hCCCEEccccC--CCcEEEEEecc
Confidence 999988 4332 36678888885
No 157
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.08 E-value=4.1e-10 Score=109.23 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=77.5
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
.+..+||.|.|||..+|+++|.++|.. +|.+..+.|+.|..++.+.|||||.|.+.++|..+++.||
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~-------------~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 165 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEV-------------YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-------------cCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC
Confidence 355689999999999999999999997 7889999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|..|. .+.+.|.||+.+.
T Consensus 166 g~~i~------gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 166 GKKID------GRRVLVDVERGRT 183 (437)
T ss_pred CCEEC------CEEEEEEEeCCCC
Confidence 99885 5689999998654
No 158
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=4.8e-10 Score=89.68 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=68.3
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...++|.|+|||...|+++|+++|.. + .+..+.|+.|.. +.+.|||||.|.++++|.+++ .+||
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~-------------~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~ 77 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHG-------------L-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNR 77 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTT-------------S-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhcc-------------C-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCC
Confidence 34579999999999999999999986 4 678899999965 888999999999999999999 6899
Q ss_pred CcccccCCCCCceEEEEeccC
Q 037791 194 YKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAri 214 (295)
+.+. .+.++|..|..
T Consensus 78 ~~~~------gr~i~V~~a~~ 92 (109)
T 2dnn_A 78 MLMI------QRYVEVSPATE 92 (109)
T ss_dssp EEET------TEEEEEEECCH
T ss_pred CeEC------CeEEEEEECCc
Confidence 8875 45788887753
No 159
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.06 E-value=3e-10 Score=90.36 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=67.5
Q ss_pred CCCccEEEEcCCCC-ccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 113 LGENTTLMIRNIPN-NLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 113 ~d~RTTVMIRNIPN-k~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
.+..++|.|+|||. .+|+++|+++|.+ +|.+..+.|..| .|||||.|.+.++|..+++.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~-------------fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l 72 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEP-------------FGVISNHLILNK------INEAFIEMATTEDAQAAVDYY 72 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGG-------------GSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHh-------------cCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHH
Confidence 44577999999999 9999999999998 788888998765 489999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccC
Q 037791 192 NKYKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAri 214 (295)
||..... ..+.+.|.||+.
T Consensus 73 ~~~~~~~----~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 73 TTTPALV----FGKPVRVHLSQK 91 (102)
T ss_dssp HHSCCEE----TTEECEEEEECC
T ss_pred cCCCceE----CCcEEEEEECCC
Confidence 9875221 367899999984
No 160
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.06 E-value=7.1e-10 Score=88.70 Aligned_cols=79 Identities=14% Similarity=0.160 Sum_probs=67.2
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
...+|.|+|||.+.|+++|+++|.+ +|.+..+.|.. .+|||||.|.+.++|..+++.+||.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~-------------fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQE-------------FGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhc-------------cCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCC
Confidence 4568999999999999999999998 67787777753 3699999999999999999999998
Q ss_pred cccccCCCCCceEEEEeccCcC
Q 037791 195 KWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQG 216 (295)
...- .++.+.|.||+-|-
T Consensus 81 ~~~i----~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 81 QIYI----AGHPAFVNYSTSQK 98 (100)
T ss_dssp CEEE----TTEEEEEEECSCSC
T ss_pred Ccee----CCcEEEEEeccccc
Confidence 6421 36789999998764
No 161
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.05 E-value=4.4e-10 Score=96.70 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=71.2
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
..++|.|+|||..+|+++|+++|.. +|.+..+.|+.|.. .+.|||||.|.+.++|.++++.+||+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~-------------~G~i~~~~i~~d~~--~~~g~~fV~f~~~~~a~~Ai~~lng~ 166 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSA-------------FGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGM 166 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEEETT--EEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccccceECCcccccHHHHHHHHHhh-------------cCCeEEEEeeccCC--CCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 3568999999999999999999997 68888899988853 47999999999999999999999999
Q ss_pred cccccCCCCCceEEEEeccCc
Q 037791 195 KWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQ 215 (295)
.+. ++.+.|.||+.+
T Consensus 167 ~~~------g~~i~V~~a~~~ 181 (213)
T 4f02_A 167 LLN------DRKVFVGRFKSR 181 (213)
T ss_dssp EET------TEECEEEECCCH
T ss_pred EEC------CEEEEEEEcCCC
Confidence 985 568999999864
No 162
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=8.6e-10 Score=84.04 Aligned_cols=78 Identities=15% Similarity=0.051 Sum_probs=66.9
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|.|+ .+|+++|+++|.+ +|.+..+.+. .+.|||||.|.+.++|.++++.+|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~-------------~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~ 70 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSP-------------FGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELN 70 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTT-------------TSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhh-------------CCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhC
Confidence 445689999996 8999999999998 6777777773 567999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|..+. .+.+.|.||+.+..
T Consensus 71 g~~~~------g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 71 GTQVE------SVQLKVNIARKQPM 89 (97)
T ss_dssp TEEET------TEEEEEECCSSCCC
T ss_pred CCeEC------CeEEEEEECCCCCC
Confidence 99884 56899999987653
No 163
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=7.8e-10 Score=87.14 Aligned_cols=69 Identities=13% Similarity=0.300 Sum_probs=61.2
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccC---CcceeeEEEecCCHHHHHHHHHH
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRR---RANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t---~~N~GYAFVNF~spedA~~F~~~ 190 (295)
...+||.|.|||..+|+++|+++|.+ +|.+. +.++.|..+ +.++|||||.|.+.++|.++++.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~-------------~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRR-------------FGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTT-------------TCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh-------------cCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHh
Confidence 44678999999999999999999987 68888 899999887 68999999999999999999999
Q ss_pred h---cCCcc
Q 037791 191 C---NKYKW 196 (295)
Q Consensus 191 f---nG~~w 196 (295)
+ +|+.+
T Consensus 72 ~~~~~G~~~ 80 (114)
T 2dnl_A 72 CLEEDGKLY 80 (114)
T ss_dssp SEEETTEEE
T ss_pred hhhcCCcEE
Confidence 8 55544
No 164
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.1e-09 Score=82.83 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=68.7
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEE-EecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFL-YLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFl-YLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
...+||.|.|||..+|+++|+++|.. +|.+..+ .++.|..++ +|||.|.+.++|.++++.+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~ 75 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQ-------------YGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLN 75 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHH-------------HSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHh-------------cCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhC
Confidence 34679999999999999999999997 6788888 788887654 49999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCc
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQ 215 (295)
|..+. .+.+.|.||+..
T Consensus 76 g~~~~------g~~l~V~~a~~~ 92 (96)
T 2e44_A 76 GFQLE------NFTLKVAYIPDE 92 (96)
T ss_dssp TCBCS------SCBCEEEECCCC
T ss_pred CCEEC------CcEEEEEEcCcc
Confidence 99985 457899999754
No 165
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.02 E-value=6.2e-10 Score=91.09 Aligned_cols=77 Identities=14% Similarity=0.255 Sum_probs=66.4
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
...++|.|+|||..+|+++|+++|.. +|.+..+ ..++.+.|||||.|.+.++|.++++.+||
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~-------------~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFED-------------ALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQG 158 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTT-------------CSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHh-------------cCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 45689999999999999999999987 4555544 56778899999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccC
Q 037791 194 YKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAri 214 (295)
..+. ++.+.|.||+.
T Consensus 159 ~~~~------g~~i~v~~a~~ 173 (175)
T 1fje_B 159 AEID------GRSVSLYYTGE 173 (175)
T ss_dssp EEET------TEEEEEEECSS
T ss_pred CEEC------CeEEEEEecCC
Confidence 9885 45799999974
No 166
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.02 E-value=4.6e-10 Score=88.98 Aligned_cols=64 Identities=13% Similarity=0.208 Sum_probs=58.1
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
..++|.|.|||..+|+++|+++|.. +|.+..+.|..| |||||.|.+.++|.++++.+||.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~ 74 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMRE-------------AGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT 74 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGG-------------GSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCC
Confidence 4679999999999999999999997 688889999887 99999999999999999999999
Q ss_pred cccc
Q 037791 195 KWEV 198 (295)
Q Consensus 195 ~w~~ 198 (295)
.+..
T Consensus 75 ~~~g 78 (115)
T 3beg_B 75 KFRS 78 (115)
T ss_dssp BCCC
T ss_pred EECC
Confidence 9863
No 167
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.02 E-value=1.1e-09 Score=96.78 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=78.3
Q ss_pred CCCccEEEEcCCCCcc-CHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 113 LGENTTLMIRNIPNNL-KRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~-Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
....++|.|+|||..+ |+++|+++|.. +|.+..+.|+.|. ++.+.|||||.|.+.++|.++++.+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~-------------~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l 246 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSA-------------VHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQA 246 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCS-------------SSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHH
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhC-------------CCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHh
Confidence 3457899999999997 99999999987 7889999999987 6888999999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccCcCh--HHHHHHh
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQGR--DALEKHF 224 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQGk--~aLv~hF 224 (295)
||..+. ++.+.|.||..... ..+.++.
T Consensus 247 ~g~~~~------g~~l~v~~a~~~~~~~~~~~~~~ 275 (284)
T 3smz_A 247 DGLSLG------GSHLRVSFCAPGPPGRSMLAALI 275 (284)
T ss_dssp TTCEET------TEECEEEECCSSSCHHHHHHHHH
T ss_pred CCCccC------CeEEEEEEecCCCcccchhhhhh
Confidence 999984 56899999986543 3444443
No 168
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=9.7e-10 Score=82.18 Aligned_cols=76 Identities=12% Similarity=0.180 Sum_probs=63.7
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
..+||.|.|||..+|+++|+++|.. +|.+..+.++.| +.|||||.|.+.++|.+ ++|.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~ 61 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQ-------------YGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGE 61 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTT-------------TSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-------------cCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcC
Confidence 3579999999999999999999987 688888888876 67999999999999964 5777
Q ss_pred cccccCCCCCceEEEEeccCcC
Q 037791 195 KWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQG 216 (295)
.+.. ..+.+.|.||+.+.
T Consensus 62 ~~~~----~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 62 DLII----KGISVHISNAEPKH 79 (88)
T ss_dssp EEEE----TTEEEEEECCCCCC
T ss_pred Ccee----CCEEEEEEecCCCC
Confidence 5532 46789999998764
No 169
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.00 E-value=4.8e-10 Score=90.61 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=58.8
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
.+||.|+|||..+|+++|+++|.. +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGK-------------YGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTT-------------TCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHh-------------CCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 579999999999999999999987 78899999999999999999999999999999999985
No 170
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.00 E-value=7.8e-10 Score=89.79 Aligned_cols=80 Identities=13% Similarity=0.194 Sum_probs=66.5
Q ss_pred CCCCccEEEEcCCCCc-cCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 112 MLGENTTLMIRNIPNN-LKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk-~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
.....++|.|+|||.. +|+++|+++|.. +|.+..+.|.. ++|||||.|.+.++|.++++.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~-------------fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~ 81 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEP-------------YGKIKNYILMR------MKSQAFIEMETREDAMAMVDH 81 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTT-------------TSCCSEEEEET------TTTEEEEECSSHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHh-------------cCCEEEEEEec------CCCEEEEEECCHHHHHHHHHH
Confidence 3455789999999997 999999999987 78888888853 469999999999999999999
Q ss_pred hcCCcccccCCCCCceEEEEeccC
Q 037791 191 CNKYKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 191 fnG~~w~~~~~gS~KiceVsyAri 214 (295)
+|+..... ..+.+.|.||+-
T Consensus 82 l~~~~~~l----~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 82 CLKKALWF----QGRCVKVDLSEK 101 (112)
T ss_dssp HHHSCCCS----SSSCCEEEEECS
T ss_pred hccCCceE----CCEEEEEEECcc
Confidence 98755321 256789999964
No 171
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.00 E-value=1.3e-09 Score=96.39 Aligned_cols=81 Identities=15% Similarity=0.233 Sum_probs=73.8
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
.++|.|+|||..+|+++|.++|.. +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||..
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~-------------~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~ 161 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRP-------------FGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP 161 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHh-------------cCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 479999999999999999999997 6889999999999999999999999999999999999999988
Q ss_pred ccccCCCCCceEEEEeccCc
Q 037791 196 WEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAriQ 215 (295)
+. ++.+.|.||...
T Consensus 162 ~~------g~~i~v~~a~~~ 175 (284)
T 3smz_A 162 LG------PRTLYVHWTDAG 175 (284)
T ss_dssp ET------TEECEEEECCGG
T ss_pred eC------CcEEEEEECCCC
Confidence 74 457888988643
No 172
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.00 E-value=8.1e-10 Score=98.07 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=72.7
Q ss_pred CCCccEEEEcCCCCc-cCHHHHHHHHhhhchhhhhcccCccCCCccEEEeccccc-CCcceeeEEEecCCHHHHHHHHHH
Q 037791 113 LGENTTLMIRNIPNN-LKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFR-RRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk-~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~-t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
....++|.|+|||.. +|+++|+++|.. +|.+..+.++.|.. |+.+.|||||.|.+.++|.+++ .
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~-------------~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~ 272 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEG-------------FGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q 272 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGG-------------GSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhc-------------cCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence 455789999999999 999999999997 68899999999987 6889999999999999999999 9
Q ss_pred hcCCcccccCCCCCceEEEEeccC
Q 037791 191 CNKYKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 191 fnG~~w~~~~~gS~KiceVsyAri 214 (295)
+||..+. ++.+.|.||+.
T Consensus 273 l~g~~~~------g~~i~V~~a~~ 290 (292)
T 2ghp_A 273 MNRSLLG------NREISVSLADK 290 (292)
T ss_dssp GTTEEET------TEEEEEEECCC
T ss_pred hcCCEEC------CcEEEEEEecC
Confidence 9999875 56899999975
No 173
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.99 E-value=5.8e-10 Score=91.23 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=68.9
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||+|+|||..+|+++|+++|.+.+.. ++ .+..|..++.+.|||||.|.+.++|.+++ .+|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~------------~~--~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~ 74 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAK------------ND--LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELT 74 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHH------------HT--CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGG
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCc------------ce--EEEEECCCCccccEEEEEECCHHHHHHHH-hcC
Confidence 4567899999999999999999999986532 22 45667778889999999999999999999 599
Q ss_pred CCcccccCCCCCceEEEEeccCc
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQ 215 (295)
|..+. ++.+.|.||..+
T Consensus 75 g~~~~------g~~l~v~~~~~~ 91 (175)
T 1fje_B 75 GLKVF------GNEIKLEKPKGR 91 (175)
T ss_dssp GEEET------TEEEEEECCCCS
T ss_pred CCEeC------CeEEEEecCCCc
Confidence 99885 557899998754
No 174
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.98 E-value=6.6e-09 Score=91.75 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=68.1
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+.|..|. .|||||.|.+.++|.++++.+|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~-------------~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~ 265 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQ-------------FPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQ 265 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHh-------------cCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcC
Confidence 345789999999999999999999997 6788888877544 4899999999999999999999
Q ss_pred CCcccccCCCCCceEEEEecc
Q 037791 193 KYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAr 213 (295)
|..+. .++.+.|+||+
T Consensus 266 g~~~~-----~g~~l~v~~ak 281 (282)
T 3pgw_A 266 GFKIT-----QNNAMKISFAK 281 (282)
T ss_pred CcEeC-----CCCEEEEEEec
Confidence 99886 25689999996
No 175
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.97 E-value=3.3e-10 Score=94.58 Aligned_cols=82 Identities=13% Similarity=0.160 Sum_probs=68.7
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||.+.|+++|+++|.. +| ...+.|+.|.. +.++|||||.|.+.++|.+++ .+|
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~-------------~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~ 106 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSP-------------LN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKD 106 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCS-------------CC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhC
Confidence 345679999999999999999999987 56 55899999976 889999999999999999999 789
Q ss_pred CCcccccCCCCCceEEEEeccCcC
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG 216 (295)
|+.+. .+.++|.+|....
T Consensus 107 g~~l~------gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 107 RANMQ------HRYIELFLNSTTG 124 (139)
T ss_dssp SCSSS------SCCCCCEECCCSC
T ss_pred CCEEC------CEEEEEEECCCCC
Confidence 98775 4467888877544
No 176
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.97 E-value=1.4e-09 Score=91.10 Aligned_cols=77 Identities=16% Similarity=0.162 Sum_probs=68.9
Q ss_pred ccEEEEcCCCC-ccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 116 NTTLMIRNIPN-NLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 116 RTTVMIRNIPN-k~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
.+||+|+|||. .+|+++|+++|.. +|.+..+.+..|. .|||||.|.+.++|.++++.+||.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~-------------~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~ 64 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGV-------------YGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGH 64 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHT-------------TCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHh-------------cCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCC
Confidence 57999999999 9999999999997 6788888888875 689999999999999999999999
Q ss_pred cccccCCCCCceEEEEeccCcC
Q 037791 195 KWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQG 216 (295)
.+. ++.+.|.||+.+.
T Consensus 65 ~~~------g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 65 KLH------GKPIRITLSKHQN 80 (198)
T ss_dssp CCS------SCCCEEEECCCCS
T ss_pred eec------CeEEEEEEecCCC
Confidence 885 4578999998664
No 177
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.96 E-value=1.7e-09 Score=94.06 Aligned_cols=77 Identities=9% Similarity=0.097 Sum_probs=68.3
Q ss_pred ccEEEEcCCC-CccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 116 NTTLMIRNIP-NNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 116 RTTVMIRNIP-Nk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
.+||+|+||| .++|+++|.++|.. +|.+.-+.+..| ..|||||.|.++++|..+++.+||.
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~-------------~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~ 65 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCL-------------YGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNN 65 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTT-------------TSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHh-------------cCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 5799999999 89999999999987 788888888765 2699999999999999999999999
Q ss_pred cccccCCCCCceEEEEeccCcC
Q 037791 195 KWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQG 216 (295)
.+. ++.+.|.||+.+.
T Consensus 66 ~~~------g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 66 FMF------GQKMNVCVSKQPA 81 (205)
T ss_dssp EET------TEECEEEECSCSC
T ss_pred EEC------CceEEEEEccCCc
Confidence 985 5689999998654
No 178
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.95 E-value=3.1e-09 Score=93.82 Aligned_cols=82 Identities=20% Similarity=0.251 Sum_probs=68.9
Q ss_pred CCCccEEEEcCCCCccCHHHHH----HHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHH
Q 037791 113 LGENTTLMIRNIPNNLKRRDLL----HILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFW 188 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll----~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~ 188 (295)
....+||.|+|||..+|+++|+ ++|.. +|.+..+.+.. ++.++|||||.|.+.++|.+++
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~-------------~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~ 69 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQ-------------FGQILDILVSR---SLKMRGQAFVIFKEVSSATNAL 69 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-------------cCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHH
Confidence 3446799999999999999987 55554 67777777765 6778999999999999999999
Q ss_pred HHhcCCcccccCCCCCceEEEEeccCcC
Q 037791 189 KACNKYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 189 ~~fnG~~w~~~~~gS~KiceVsyAriQG 216 (295)
+.+||..|. ++.+.|.||+.+.
T Consensus 70 ~~l~g~~~~------g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 70 RSMQGFPFY------DKPMRIQYAKTDS 91 (282)
T ss_pred HHhcCCeeC------CcEEEEEEeccCc
Confidence 999999885 4689999997654
No 179
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.94 E-value=1.8e-09 Score=85.52 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=63.6
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
-+.|.|+||+...|+++|+++|.++ |...-++|.. ++|||||-|.+.++|.++++.+||..
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~-------------G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~ 67 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQH-------------GPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCV 67 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHH-------------SCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhh-------------CCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCE
Confidence 5689999999999999999999995 5666666644 58999999999999999999999998
Q ss_pred ccccCCCCCceEEEEec
Q 037791 196 WEVEAPGNKKMCEIACA 212 (295)
Q Consensus 196 w~~~~~gS~KiceVsyA 212 (295)
+. ++.+.|.+|
T Consensus 68 l~------gr~I~V~~A 78 (89)
T 2wbr_A 68 LA------NTTIFAESP 78 (89)
T ss_dssp ET------TEEEEEECC
T ss_pred EC------CcEEEEEEC
Confidence 85 568999999
No 180
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.94 E-value=2.4e-09 Score=93.08 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=70.0
Q ss_pred CCCccEEEEcCCCC-ccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 113 LGENTTLMIRNIPN-NLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 113 ~d~RTTVMIRNIPN-k~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
....+||+|+|||. .+|+++|+++|.. +|.+..+.|..|. .|||||.|.+.++|.++++.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~-------------~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l 92 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGV-------------YGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHL 92 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHH-------------HTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh-------------CCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHh
Confidence 34578999999999 9999999999998 6788888888875 699999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccCc
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQ 215 (295)
||..|. ++.+.|.||+.+
T Consensus 93 ~g~~~~------g~~l~v~~a~~~ 110 (229)
T 2adc_A 93 NGHKLH------GKPIRITLSKHQ 110 (229)
T ss_dssp TTCBCS------SSBCEEECCSCC
T ss_pred CCCeEC------CeEEEEEEecCc
Confidence 999885 457899999865
No 181
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.94 E-value=2.1e-09 Score=79.37 Aligned_cols=74 Identities=15% Similarity=0.261 Sum_probs=56.4
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
..+||.|.|||..+|+++|+++|.+.+..... .....+....+.+..| .|||||.|.+.++|.+++ .+||.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~--~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGL--TQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTC--CSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhccc--ccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 35699999999999999999999985210000 0000116677777655 699999999999999999 99999
Q ss_pred ccc
Q 037791 195 KWE 197 (295)
Q Consensus 195 ~w~ 197 (295)
.|.
T Consensus 76 ~~~ 78 (87)
T 2hzc_A 76 IFQ 78 (87)
T ss_dssp EET
T ss_pred EEC
Confidence 985
No 182
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.93 E-value=2.5e-09 Score=94.92 Aligned_cols=84 Identities=13% Similarity=0.187 Sum_probs=74.3
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
.++|.|+|||..+|.++|.++|.. +|.+..+.++.| .++.+.|||||.|.+.++|.++++.+||..
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~-------------~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~ 161 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQ-------------FGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGA 161 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCcccccCCCCCCCHHHHHHHHHh-------------cCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCe
Confidence 569999999999999999999987 788999999999 688999999999999999999999997766
Q ss_pred ccccCCCCCceEEEEeccCc
Q 037791 196 WEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAriQ 215 (295)
+-.. +..+.+.|.||..+
T Consensus 162 ~~~~--~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 162 FLLT--TTPRPVIVEPMEQF 179 (261)
T ss_dssp EESS--SSCCBCEEEECCCE
T ss_pred EEec--CCCceEEEeecccc
Confidence 6543 36778999999754
No 183
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.91 E-value=3.2e-09 Score=88.94 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=67.0
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCC-CccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS-EFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G-~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
...+||.|+|||..+|+++|+++|.. +| .+..+.+-.+ +.|||||.|.+.++|.++++.+|
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~-------------~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~ 179 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSS-------------NGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLH 179 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHH-------------TTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHT
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHH-------------cCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhc
Confidence 34689999999999999999999998 57 7777776332 26999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCc
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQ 215 (295)
|..+. .++.+.|.||+.+
T Consensus 180 g~~~~-----~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 180 NHDLG-----ENHHLRVSFSKST 197 (198)
T ss_dssp SSCCS-----SCCSCCEEEECCC
T ss_pred CCccC-----CCCeEEEEeeccc
Confidence 99985 2457899999865
No 184
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.91 E-value=1.6e-09 Score=89.24 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=65.5
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCcc--EEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFD--FLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YD--FlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
....++|.|+|||...|+++|+++|.. + .+. .+.|+.|.. +.++|||||.|.++++|.++++.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~-------------~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSG-------------L-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTT-------------S-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhc-------------C-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH
Confidence 344678999999999999999999987 3 344 789999987 88999999999999999999985
Q ss_pred hcCCcccccCCCCCceEEEEecc
Q 037791 191 CNKYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 191 fnG~~w~~~~~gS~KiceVsyAr 213 (295)
+|..+. .+.++|.+|.
T Consensus 104 -~~~~l~------gR~I~V~~a~ 119 (126)
T 2hgm_A 104 -HKERIG------HRYIEVFKSS 119 (126)
T ss_dssp -TTCCBT------TBCCCCEEEC
T ss_pred -CCCEEC------CEEEEEEECC
Confidence 676554 4467777774
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.91 E-value=3.7e-09 Score=93.79 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=68.6
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCC-CccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS-EFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G-~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
...+||.|+|||..+|+++|.++|.. +| .+..++++.|.. +.+.|||||.|.+.++|.++++.+|
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~-------------~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~ 180 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQD-------------INVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLN 180 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHH-------------TTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHH-------------hCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhC
Confidence 35789999999999999999999998 67 889999998876 6789999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcChH
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGRD 218 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk~ 218 (295)
|..+. ++.+.|.||..+...
T Consensus 181 g~~~~------g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 181 GLKIE------GYTLVTKVSNPLEKS 200 (292)
T ss_dssp TCEET------TEECEEEECCCC---
T ss_pred CCEeC------CcEEEEEECCCCccc
Confidence 99985 467899999877543
No 186
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=2.2e-09 Score=81.29 Aligned_cols=76 Identities=8% Similarity=0.097 Sum_probs=63.1
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
..+||.|.|||..+|+++|+++|.. +|.+.-+ .+|..++. ||||.|.+.++|.++++ +||+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~-------------~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~ 67 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLA-------------FGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQH 67 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGG-------------TSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-------------cCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCe
Confidence 3469999999999999999999997 5666554 77776665 99999999999999999 9999
Q ss_pred cccccCCCCCceEEEEeccCc
Q 037791 195 KWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQ 215 (295)
.+. .+.+.|.+|...
T Consensus 68 ~~~------g~~l~V~~a~~~ 82 (94)
T 2e5g_A 68 SLG------GHRLRVRPREQK 82 (94)
T ss_dssp EET------TEECCCBCSCCS
T ss_pred EEC------CEEEEEEECCcC
Confidence 985 456788777543
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.88 E-value=6.7e-09 Score=90.25 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=66.9
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCC-CccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS-EFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G-~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
...+||.|+|||..+|+++|+++|.. +| .+..+.+-.+ +.|||||.|.+.++|.++++.+|
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~-------------~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~ 210 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSS-------------NGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLH 210 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHT-------------TSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHH-------------cCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHC
Confidence 34689999999999999999999998 57 7777776222 36999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCc
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQ 215 (295)
|..+. .++.+.|+||+.|
T Consensus 211 g~~~~-----~g~~l~v~~a~~~ 228 (229)
T 2adc_A 211 NHDLG-----ENHHLRVSFSKST 228 (229)
T ss_dssp TCBSS-----SSCBCEEEECSSC
T ss_pred CCccC-----CCCeEEEEEecCC
Confidence 99985 2557999999865
No 188
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.87 E-value=7.4e-09 Score=89.67 Aligned_cols=82 Identities=9% Similarity=-0.014 Sum_probs=69.1
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
..-.+|.|.|||..+|+++|.++|.. +|.+.-+++.. +.+.|||||.|.+.++|.++++.+||
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~-------------fG~V~~V~i~~----k~~rgfAFVeF~d~~~A~~Ai~~LnG 106 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSK-------------FGTVLKIITFT----KNNQFQALLQYADPVSAQHAKLSLDG 106 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHH-------------HSCEEEEEEEE----SSSCEEEEEEESCHHHHHHHHHHSTT
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHh-------------cCCEEEEEEEe----CCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 33568999999999999999999998 67888888742 23579999999999999999999999
Q ss_pred CcccccCCCCCceEEEEeccCcC
Q 037791 194 YKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyAriQG 216 (295)
..+.. ..+.+.|.||+.+.
T Consensus 107 ~~i~g----~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 107 QNIYN----ACCTLRIDFSKLTS 125 (164)
T ss_dssp BCSSS----SCSCEEEEECSSSS
T ss_pred CEecC----CCcEEEEEEecCCc
Confidence 99852 23578999999874
No 189
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.85 E-value=1.1e-08 Score=81.03 Aligned_cols=80 Identities=8% Similarity=0.060 Sum_probs=67.4
Q ss_pred ccEEEEcCCCC--cc---CHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccC-CcceeeEEEecCCHHHHHHHHH
Q 037791 116 NTTLMIRNIPN--NL---KRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRR-RANLGYAFVNFTTAAGALRFWK 189 (295)
Q Consensus 116 RTTVMIRNIPN--k~---Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t-~~N~GYAFVNF~spedA~~F~~ 189 (295)
..+|.|+|+.. .+ ++++|+++|.+ +|...-++++.|..+ +.++|||||.|.++++|.++++
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~-------------~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~ 74 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEK-------------YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVV 74 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGG-------------GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHH
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHh-------------cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHH
Confidence 45899999974 23 56778777776 789999999998754 5789999999999999999999
Q ss_pred HhcCCcccccCCCCCceEEEEeccC
Q 037791 190 ACNKYKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 190 ~fnG~~w~~~~~gS~KiceVsyAri 214 (295)
.+||..+. ++.+.|.||..
T Consensus 75 ~lnG~~~~------Gr~i~v~~a~~ 93 (105)
T 2pe8_A 75 DLNGRYFG------GRVVKACFYNL 93 (105)
T ss_dssp HHTTCEET------TEECEEEECCH
T ss_pred HHCCCEEC------CcEEEEEEcCH
Confidence 99999985 56899999963
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=1.6e-08 Score=79.58 Aligned_cols=76 Identities=20% Similarity=0.181 Sum_probs=60.6
Q ss_pred ccEEEEcCC--CCccC---------HHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHH
Q 037791 116 NTTLMIRNI--PNNLK---------RRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGA 184 (295)
Q Consensus 116 RTTVMIRNI--PNk~T---------q~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA 184 (295)
..||+|+|| |..+. +++|+++|.+ +|.+.-+++ .|. .+.|||||.|.+.++|
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-------------~G~v~~v~i-~~~---~~~G~afV~f~~~~~A 77 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK-------------FGQIRKLLL-FDR---HPDGVASVSFRDPEEA 77 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG-------------TSCCSEEEE-ETT---CTTCEEEEECSCHHHH
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc-------------cCCEeEEEE-ecC---CCCEEEEEEECCHHHH
Confidence 458999999 44432 4677777776 678888877 443 2689999999999999
Q ss_pred HHHHHHhcCCcccccCCCCCceEEEEeccC
Q 037791 185 LRFWKACNKYKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 185 ~~F~~~fnG~~w~~~~~gS~KiceVsyAri 214 (295)
.++++.+||+.+. .+.+.|.||..
T Consensus 78 ~~Ai~~lng~~~~------gr~l~v~~a~~ 101 (112)
T 2dit_A 78 DYCIQTLDGRWFG------GRQITAQAWDG 101 (112)
T ss_dssp HHHHHHSTTCEET------TEECEEEECCS
T ss_pred HHHHHHcCCCEEC------CcEEEEEEeCC
Confidence 9999999999885 56889999864
No 191
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.83 E-value=3.9e-08 Score=80.98 Aligned_cols=77 Identities=19% Similarity=0.100 Sum_probs=64.6
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceee-EEEecCCHHHHHHHHHHhcCCcc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGY-AFVNFTTAAGALRFWKACNKYKW 196 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GY-AFVNF~spedA~~F~~~fnG~~w 196 (295)
.|.|.|||..+|+++|.++|.+ +|.+.-+.+.. + + || |||.|.+.++|..+++.+||..+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~-------------yG~V~~v~i~~--~---~-Gf~aFVef~~~~~A~~A~~~LnG~~i 87 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNP-------------VGKVQRIVIFK--R---N-GIQAMVEFESVLCAQKAKAALNGADI 87 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTT-------------TSCEEEEEEEE--S---S-SEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred EEEEcCcCCCCCHHHHHHHHHh-------------cCCEEEEEEEe--C---C-CCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4568999999999999999998 68888888742 1 2 85 99999999999999999999999
Q ss_pred cccCCCCCceEEEEeccCcCh
Q 037791 197 EVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 197 ~~~~~gS~KiceVsyAriQGk 217 (295)
.. ....+.|.||+.+..
T Consensus 88 ~g----~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 88 YA----GCCTLKIEYARPTRL 104 (124)
T ss_dssp BT----TBSEEEEECCSCSCC
T ss_pred cC----CCeEEEEEEecCCcc
Confidence 62 224789999997753
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.82 E-value=1.5e-08 Score=89.88 Aligned_cols=89 Identities=15% Similarity=0.271 Sum_probs=73.0
Q ss_pred CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
....+||.|+|||..+|+++|+++|.. +|.+..+.+.. +.|||||.|.+.++|..+++.+|
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~ 79 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFER-------------YGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELD 79 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGG-------------GCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-------------cCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcC
Confidence 466889999999999999999999987 67777777743 46999999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcC------------hHHHHHHhcc
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQG------------RDALEKHFER 226 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQG------------k~aLv~hFrn 226 (295)
|..+. ++.+.|.||.... .+.|.+.|..
T Consensus 80 g~~i~------g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~ 119 (261)
T 3sde_A 80 GTILK------SRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQ 119 (261)
T ss_dssp TCEET------TEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGG
T ss_pred CcEEC------CceeEeeecccCCcccccCCCCCCCHHHHHHHHHh
Confidence 99885 4578888876321 2467777754
No 193
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.79 E-value=1.4e-08 Score=92.32 Aligned_cols=84 Identities=15% Similarity=0.106 Sum_probs=67.9
Q ss_pred CCCccEEEEcCCCCcc---------CHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHH
Q 037791 113 LGENTTLMIRNIPNNL---------KRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAG 183 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~---------Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~sped 183 (295)
....+||.|.|||..+ ++++|+++|.+ +|.+..+.+.. ++|||||.|.+.++
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~-------------fG~I~~v~v~~------~kG~AFV~F~~~~~ 191 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSR-------------LGDIDRIRYVE------SKNCGFVKFKYQAN 191 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHT-------------TSCEEEEEEEG------GGTEEEEEESSHHH
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHc-------------cCCEEEEEEEC------CCCEEEEEeCCHHH
Confidence 3457899999999998 79999999998 78888888764 47999999999999
Q ss_pred HHHHHHHhcCCccccc------CCCCCceEEEEeccCc
Q 037791 184 ALRFWKACNKYKWEVE------APGNKKMCEIACADIQ 215 (295)
Q Consensus 184 A~~F~~~fnG~~w~~~------~~gS~KiceVsyAriQ 215 (295)
|+.+++.+||+.+..- ..+.++.+.|.||+-.
T Consensus 192 Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 192 AEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred HHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 9999999999988100 0013568999999854
No 194
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.77 E-value=1.6e-08 Score=87.45 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=66.7
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
.+||.|+|||...|+++|.++|.. +|.+..+.|+.|.. +.+.|||||.|.+.++|.++++..+ ..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~-------------~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~ 173 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLED-------------KGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QK 173 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTT-------------SCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTT-CE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhc-------------CCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCC-Ce
Confidence 579999999999999999999997 78899999999864 8889999999999999999997664 45
Q ss_pred ccccCCCCCceEEEEecc
Q 037791 196 WEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAr 213 (295)
|. ++.+.|.|++
T Consensus 174 ~~------Gr~l~V~~~~ 185 (193)
T 2voo_A 174 YK------ETDLLILFKD 185 (193)
T ss_dssp ET------TEECEEEETT
T ss_pred EC------CEEEEEEEhH
Confidence 53 5578888865
No 195
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.76 E-value=3.8e-08 Score=82.09 Aligned_cols=82 Identities=9% Similarity=0.008 Sum_probs=69.4
Q ss_pred CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceee-EEEecCCHHHHHHHHHHhc
Q 037791 114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGY-AFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GY-AFVNF~spedA~~F~~~fn 192 (295)
..-..|.|.|||..+|+++|.++|.+ +|.+.-+.+..+ +.|| |||.|.+.++|..+++.+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~-------------yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~Ln 87 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSK-------------FGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLD 87 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTT-------------SSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhC-------------cCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcC
Confidence 44678899999999999999999998 788888877643 2477 9999999999999999999
Q ss_pred CCcccccCCCCCceEEEEeccCcCh
Q 037791 193 KYKWEVEAPGNKKMCEIACADIQGR 217 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAriQGk 217 (295)
|..|.. ..+.+.|.||+.+..
T Consensus 88 G~~i~g----~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 88 GQNIYN----ACCTLRIDFSKLTSL 108 (130)
T ss_dssp TCEEET----TEEEEEEEECSCSSC
T ss_pred CCeecC----CCcEEEEEecCCCce
Confidence 999963 246889999997743
No 196
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.75 E-value=3.7e-09 Score=87.61 Aligned_cols=85 Identities=13% Similarity=0.198 Sum_probs=62.3
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
.+||+|+|||.++|+++|+++|..++........ ....+-.+. ++.+.|||||.|.+.++|.+++ .+||..
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~--~~~~v~~~~------~~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQA--PGNPVLAVQ------INQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSS--SSCSEEEEE------EETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccC--CCCceEEeE------ecCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 4699999999999999999999986532210000 000222222 2456899999999999999999 899998
Q ss_pred ccccCCCCCceEEEEeccCc
Q 037791 196 WEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 196 w~~~~~gS~KiceVsyAriQ 215 (295)
|. ++.+.|.||...
T Consensus 75 ~~------g~~i~v~~~~~~ 88 (198)
T 2yh0_A 75 FQ------GQSLKIRRPHDY 88 (198)
T ss_dssp ET------TEEEEEECCCCC
T ss_pred Ec------CceEEEeCCCCC
Confidence 85 557899988653
No 197
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.73 E-value=2.5e-08 Score=80.79 Aligned_cols=86 Identities=13% Similarity=0.215 Sum_probs=61.7
Q ss_pred CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~ 194 (295)
..+||.|+|||..+|+++|+++|.+.+....... ........+.+ +.+.|||||.|.++++|.+++ .+||.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~--~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ--APGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCS--SSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GGTTC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhccccc--CCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-HhCCc
Confidence 3579999999999999999999998643211000 00002333333 344799999999999999999 89999
Q ss_pred cccccCCCCCceEEEEeccCc
Q 037791 195 KWEVEAPGNKKMCEIACADIQ 215 (295)
Q Consensus 195 ~w~~~~~gS~KiceVsyAriQ 215 (295)
.+. ++.+.|.++...
T Consensus 74 ~~~------g~~i~v~~~~~~ 88 (172)
T 2g4b_A 74 IFQ------GQSLKIRRPHDY 88 (172)
T ss_dssp EET------TEECEEECCSSC
T ss_pred Eec------CceeeecCCccc
Confidence 885 456788887643
No 198
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=4e-08 Score=78.92 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=59.6
Q ss_pred CCccEEEEcCCCCccCHHHHH----HHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHH
Q 037791 114 GENTTLMIRNIPNNLKRRDLL----HILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWK 189 (295)
Q Consensus 114 d~RTTVMIRNIPNk~Tq~~Ll----~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~ 189 (295)
...|+|+|+|||.+.+.++|+ ++|++++ |+.=-+ ++ |+|||.|.+.++|.++++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG------------G~Vl~V-------tg---G~AfV~F~~~esA~~A~~ 64 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCG------------GKVLSI-------TG---CSAILRFINQDSAERAQK 64 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTT------------CCEEEC-------CT---TCEEEEESSHHHHHHHHH
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcC------------CeeEEE-------ec---CEEEEEECCHHHHHHHHH
Confidence 457889999999999999865 5666531 233222 33 999999999999999999
Q ss_pred HhcCCcccccCCCCCceEEEEeccCcC
Q 037791 190 ACNKYKWEVEAPGNKKMCEIACADIQG 216 (295)
Q Consensus 190 ~fnG~~w~~~~~gS~KiceVsyAriQG 216 (295)
.+||..+. .|.+.|.||+...
T Consensus 65 ~l~G~~l~------gr~i~v~~A~~~s 85 (96)
T 2diu_A 65 RMENEDVF------GNRIIVSFTPKNR 85 (96)
T ss_dssp HHTTCCSS------SSCCEEESSCCSC
T ss_pred HhcCCccC------CceEEEEecCCCc
Confidence 99999875 6789999998653
No 199
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.69 E-value=4.6e-08 Score=85.08 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=63.5
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCc--cEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEF--DFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~Y--DFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
.+||.|+|||..+|+++|+++|.+ +|.+ ..+-+..|. +...|||||.|.+.++|.++++.+||
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~-------------~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng 187 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDE-------------LGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNH 187 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHH-------------HTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTT
T ss_pred cceEEEeCCCCCCCHHHHHHHHHh-------------cCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 468999999999999999999998 4666 556665554 33459999999999999999999999
Q ss_pred CcccccCCCCCceEEEEec
Q 037791 194 YKWEVEAPGNKKMCEIACA 212 (295)
Q Consensus 194 ~~w~~~~~gS~KiceVsyA 212 (295)
+.+..-. +.....|-||
T Consensus 188 ~~~~g~~--~~~p~~vk~~ 204 (205)
T 3tyt_A 188 YQMKNPN--GPYPYTLKLC 204 (205)
T ss_dssp CEECCSS--SSSCEECEEE
T ss_pred CCccCCC--CCcceEEEec
Confidence 9997543 4445555544
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.67 E-value=6.5e-08 Score=76.49 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=64.5
Q ss_pred cEEEEcCC--CCccCH--------HHHHHHHhhhchhhhhcccCccCCCccEEEecccccCC--cceeeEEEecCCHHHH
Q 037791 117 TTLMIRNI--PNNLKR--------RDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRR--ANLGYAFVNFTTAAGA 184 (295)
Q Consensus 117 TTVMIRNI--PNk~Tq--------~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~--~N~GYAFVNF~spedA 184 (295)
..|.|+|+ |..+.. ++|++++.+ +|...-++++.|..++ .++|||||.|.++++|
T Consensus 6 ~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-------------~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A 72 (105)
T 3v4m_A 6 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-------------YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDC 72 (105)
T ss_dssp SEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-------------TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHH
T ss_pred eEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-------------cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHH
Confidence 47899998 666643 455555554 7899999999998653 5789999999999999
Q ss_pred HHHHHHhcCCcccccCCCCCceEEEEeccC
Q 037791 185 LRFWKACNKYKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 185 ~~F~~~fnG~~w~~~~~gS~KiceVsyAri 214 (295)
.++++.+||..+. ++.+.|+|+..
T Consensus 73 ~~Ai~~lnG~~f~------GR~i~v~~~~~ 96 (105)
T 3v4m_A 73 QKAMQGLTGRKFA------NRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHTTCEET------TEECEEEEECH
T ss_pred HHHHHHhCCCEeC------CCEEEEEEeCH
Confidence 9999999999885 56889999864
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.66 E-value=6.5e-08 Score=78.59 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=63.7
Q ss_pred ccEEEEcCCC--CccC---HHHHHHHHhhhchhhhhcccCccCCCccEEEeccccc----CCcceeeEEEecCCHHHHHH
Q 037791 116 NTTLMIRNIP--NNLK---RRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFR----RRANLGYAFVNFTTAAGALR 186 (295)
Q Consensus 116 RTTVMIRNIP--Nk~T---q~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~----t~~N~GYAFVNF~spedA~~ 186 (295)
-.+|.|+|+- ..+. +++|++++.+ +|...-++++.|.. ++..+|||||.|.++++|.+
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k-------------~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~ 86 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGK-------------FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHK 86 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTT-------------TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhc-------------cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHH
Confidence 4589999994 3333 3455555554 78999999999976 35678999999999999999
Q ss_pred HHHHhcCCcccccCCCCCceEEEEeccC
Q 037791 187 FWKACNKYKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 187 F~~~fnG~~w~~~~~gS~KiceVsyAri 214 (295)
+++.+||..+. ++.+.|+|+..
T Consensus 87 Ai~~LnGr~f~------GR~i~v~~~~~ 108 (118)
T 3ue2_A 87 AIQALNGRWFA------GRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHTTCEET------TEECEEEEECH
T ss_pred HHHHHCCCEEC------CcEEEEEEcCh
Confidence 99999999885 56889999863
No 202
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.56 E-value=1.7e-07 Score=79.47 Aligned_cols=78 Identities=8% Similarity=0.050 Sum_probs=67.4
Q ss_pred cEEEEcCC----CCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCC----HHH----H
Q 037791 117 TTLMIRNI----PNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTT----AAG----A 184 (295)
Q Consensus 117 TTVMIRNI----PNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~s----ped----A 184 (295)
|+|+|.|| |...+++.|+++|.+ +|++.-+-+..|..|+.++|||||-|.+ +++ |
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~-------------fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA 69 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKK-------------YGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAA 69 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHT-------------TSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHH
Confidence 79999999 999999999999998 8899999999999999999999999996 433 7
Q ss_pred HHHHH--HhcCCcccccCCCCCceEEEEecc
Q 037791 185 LRFWK--ACNKYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 185 ~~F~~--~fnG~~w~~~~~gS~KiceVsyAr 213 (295)
.+++. .+||..+. +..+.|.+=+
T Consensus 70 ~kAi~~~~lng~~I~------Gr~irV~ln~ 94 (136)
T 2j8a_A 70 FSAVRKHESSGCFIM------GFKFEVILNK 94 (136)
T ss_dssp HHHHHHTTTTCEEET------TEEEEEEECC
T ss_pred HHHHHHhhhcCCeec------CcEEEEEECc
Confidence 88888 67999986 4467887744
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.54 E-value=6.1e-08 Score=76.41 Aligned_cols=82 Identities=9% Similarity=0.093 Sum_probs=59.5
Q ss_pred CCCCccCHHHHHHHHhhhchhhhhcccC-ccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccccCC
Q 037791 123 NIPNNLKRRDLLHILDSHCRVEYLKSKW-HCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAP 201 (295)
Q Consensus 123 NIPNk~Tq~~Ll~ilDe~c~~en~k~~~-~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~ 201 (295)
+||..+|+++|.+.++.....-. .+= .-+|.+.-+.++.|.. +.++|||||.|.++++|.++++.+||+.+.
T Consensus 22 ~l~~~~~~~~l~~~f~~~~edl~--~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~---- 94 (104)
T 1jmt_A 22 GLRSAVSDVEMQEHYDEFFEEVF--TEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFN---- 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEET----
T ss_pred CcccccCHHHHHHHHHHHHHHHH--HHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEEC----
Confidence 45556678888776643211000 000 1179999999998865 678999999999999999999999999875
Q ss_pred CCCceEEEEecc
Q 037791 202 GNKKMCEIACAD 213 (295)
Q Consensus 202 gS~KiceVsyAr 213 (295)
++.+.|.||.
T Consensus 95 --Gr~i~v~~sp 104 (104)
T 1jmt_A 95 --GQPIHAELSP 104 (104)
T ss_dssp --TEECCEEECC
T ss_pred --CEEEEEEEcC
Confidence 5677888873
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.51 E-value=2.4e-07 Score=88.28 Aligned_cols=84 Identities=21% Similarity=0.301 Sum_probs=67.0
Q ss_pred cccCCCCccEEEEcC--CCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHH
Q 037791 109 YGAMLGENTTLMIRN--IPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALR 186 (295)
Q Consensus 109 ~~~~~d~RTTVMIRN--IPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~ 186 (295)
+......-.||.|.| |+...|+++|+++|.+ +|+.+.+.++. ++|||||.|.+.++|.+
T Consensus 11 v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~-------------~G~V~~v~~~~------~kgfaFV~f~~~~~A~~ 71 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEK-------------CGLVDALLMPP------NKPYSFARYRTTEESKR 71 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHT-------------TSCEEEEECCT------TCSEEEEEESSHHHHHH
T ss_pred ceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHh-------------cCCeEEEEEeC------CCCEEEEEECCHHHHHH
Confidence 333344455999999 5889999999999998 68888888764 46999999999999999
Q ss_pred HHHHhcCCcccccCCCCCceEEEEec
Q 037791 187 FWKACNKYKWEVEAPGNKKMCEIACA 212 (295)
Q Consensus 187 F~~~fnG~~w~~~~~gS~KiceVsyA 212 (295)
+++.+||..+-... |.++++-|+|+
T Consensus 72 Ai~~lnG~~~~~~~-g~~~~ly~~~~ 96 (345)
T 3tht_A 72 AYVTLNGKEVVDDL-GQKITLYLNFV 96 (345)
T ss_dssp HHHHTTTCEEECTT-SCEEECEEEEC
T ss_pred HHHHhCCCcccccc-CCceEEEEEEe
Confidence 99999999884332 33446677777
No 205
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=4.8e-07 Score=71.55 Aligned_cols=66 Identities=21% Similarity=0.134 Sum_probs=55.0
Q ss_pred CccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCc
Q 037791 126 NNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKK 205 (295)
Q Consensus 126 Nk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~K 205 (295)
..+|+++|+++|.+ +|.+..++|+ +.++|||||.|.+.++|..+++..+|. ..+
T Consensus 27 ~~~te~~L~~~F~~-------------~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~--------~g~ 80 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-------------YGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGL--------VDN 80 (100)
T ss_dssp CSCCHHHHHHHHHT-------------TSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBC--------SSS
T ss_pred CCCCHHHHHHHHHh-------------cCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCC--------CCC
Confidence 46899999999998 7888889887 357899999999999999999986553 245
Q ss_pred eEEEEeccCcCh
Q 037791 206 MCEIACADIQGR 217 (295)
Q Consensus 206 iceVsyAriQGk 217 (295)
.+.|.||+.+..
T Consensus 81 ~l~V~~a~~~~~ 92 (100)
T 2d9o_A 81 PLKISWLEGQPQ 92 (100)
T ss_dssp BCEEECSSCCCC
T ss_pred eEEEEEccCCCC
Confidence 789999987753
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.20 E-value=6.2e-06 Score=66.57 Aligned_cols=89 Identities=15% Similarity=0.167 Sum_probs=65.7
Q ss_pred EEEEcCCCCccC------HHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 118 TLMIRNIPNNLK------RRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 118 TVMIRNIPNk~T------q~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
.|.|+|+=..-. .++|.+-|.+.|. -+|...-++++.|. .+|||||.|.+.++|.++++.+
T Consensus 9 vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~---------kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~l 75 (114)
T 3s6e_A 9 CFQLSNMFNPQTEEEVGWDTEIKDDVIEECN---------KHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNAL 75 (114)
T ss_dssp EEEEESSCCTTTCCSTTHHHHHHHHHHHHHT---------TTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHH
T ss_pred EEEEECCCChHHccChhHHHHHHHHHHHHHh---------ccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHh
Confidence 688999855443 3444444444331 17888889997763 4899999999999999999999
Q ss_pred cCCcccccCCCCCceEEEEeccCcChHHHHHHhcccc
Q 037791 192 NKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFK 228 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAriQGk~aLv~hFrnS~ 228 (295)
||..+. ++.+.|.|+..+. -.++|.++.
T Consensus 76 nG~~f~------GR~i~v~~~~~~~---y~~~fp~a~ 103 (114)
T 3s6e_A 76 HGRWFA------GKMITAAYVPLPT---YHNLFPDSM 103 (114)
T ss_dssp TTCEET------TEECEEEEECHHH---HHHHCGGGS
T ss_pred CCCEEC------CEEEEEEEEcHHH---HHHhCcccc
Confidence 999885 6689999997553 345666554
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.51 E-value=0.00021 Score=61.55 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=47.2
Q ss_pred CCCccEEEeccccc----CCcceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEecc
Q 037791 153 KSEFDFLYLPMDFR----RRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 153 ~G~YDFlYLPiDf~----t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyAr 213 (295)
+|...-+.++.+.. ++..+|++||.|.+.++|.++++.+||..|. ++.+.++|+.
T Consensus 153 ~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~------gr~i~~~~~~ 211 (222)
T 3dxb_A 153 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA------GRKVVAEVYD 211 (222)
T ss_dssp TSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS------SSBCEEEECC
T ss_pred cCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC------CeEEEEEEcC
Confidence 78888999986654 4488999999999999999999999999885 5678888876
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.85 E-value=0.0023 Score=52.68 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=54.4
Q ss_pred CCCccEEEEcCCCCc-cCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCC-HHHHHHHHHH
Q 037791 113 LGENTTLMIRNIPNN-LKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTT-AAGALRFWKA 190 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk-~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~s-pedA~~F~~~ 190 (295)
...-+-|.|.||+.. .|.++|+++|.+ +|..-|+.+..|-.+ |||-|.+ +.+|.++++.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~-------------~G~V~~Vd~~~g~~t------gfVrf~~~~~~A~~av~~ 75 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSN-------------HGEIKWIDFVRGAKE------GIILFKEKAKEALGKAKD 75 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCS-------------SCCEEEEECCTTCSE------EEEEESSCHHHHHHHHHH
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHh-------------cCCEEEEEEecCCCE------EEEEECCChHHHHHHHHH
Confidence 455678999999999 999999999997 688889988888764 9999999 7999999999
Q ss_pred hcC
Q 037791 191 CNK 193 (295)
Q Consensus 191 fnG 193 (295)
+|.
T Consensus 76 ln~ 78 (121)
T 1owx_A 76 ANN 78 (121)
T ss_dssp TTT
T ss_pred hhc
Confidence 963
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.82 E-value=0.0037 Score=49.60 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=54.0
Q ss_pred EEEEcCCC-----CccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 118 TLMIRNIP-----NNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 118 TVMIRNIP-----Nk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
||+|...| +-++.+...++++.... +|..--+.+..|. +||.|.+.++|.++++ +|
T Consensus 9 tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~----------~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mn 69 (91)
T 2dnr_A 9 TVLVSIKSSLPENNFFDDALIDELLQQFAS----------FGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LN 69 (91)
T ss_dssp EEEEEEECSSTTTCSCCHHHHHHHHHHHHT----------TCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GT
T ss_pred eEEEEeccCccccccCCHHHHHHHHHHHHh----------CCCeEEEEEecCC--------EEEEECChHHHHHHHh-cC
Confidence 99999887 34565444444444321 6766667777765 8999999999999998 99
Q ss_pred CCcccccCCCCCceEEEEeccC
Q 037791 193 KYKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 193 G~~w~~~~~gS~KiceVsyAri 214 (295)
|.... .+.+.|.+|+.
T Consensus 70 G~~v~------Gr~LkV~lkt~ 85 (91)
T 2dnr_A 70 GKELL------NRTITIALKSP 85 (91)
T ss_dssp TCEET------TEEEEEEECCC
T ss_pred CeEeC------CeEEEEEeCCC
Confidence 99874 67899998873
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.71 E-value=0.002 Score=52.28 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=58.1
Q ss_pred CCCccEEEEcCCCCcc-CHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 113 LGENTTLMIRNIPNNL-KRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 113 ~d~RTTVMIRNIPNk~-Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
.+.-|||.|.||+..+ +.++|++.|++.-. .+..-..|-||+- ....-|||.++++|.++...+
T Consensus 2 s~~pntLiitnl~~~vF~~~~lk~~~e~Lf~--------~~~~~~tF~~lkS-------FRRirv~F~~~~~A~~AR~~L 66 (104)
T 1wey_A 2 SSGSSGLIACVANDDVFSESETRAKFESLFR--------TYDKDTTFQYFKS-------FKRVRINFSNPLSAADARLRL 66 (104)
T ss_dssp CSCCCEEEEECCCGGGGSTTTHHHHHHHHHH--------TTCSSCEEEEETT-------TTEEEEECSSTTHHHHHHHTS
T ss_pred CCCCceEEEecCCHHHcCCHHHHHHHHHHHH--------hhCcCcceeecCc-------ceEEEEEeCChHHHHHHHHHh
Confidence 4567899999998866 65555444443200 0122334778753 457899999999999999999
Q ss_pred cCCcccccCCCCCceEEEEecc
Q 037791 192 NKYKWEVEAPGNKKMCEIACAD 213 (295)
Q Consensus 192 nG~~w~~~~~gS~KiceVsyAr 213 (295)
||..+. ++.+.|+||.
T Consensus 67 h~~~f~------g~~~r~YFgq 82 (104)
T 1wey_A 67 HKTEFL------GKEMKLYFAQ 82 (104)
T ss_dssp TTSEET------TEECEEECCC
T ss_pred ccceec------CceeEEEecC
Confidence 999875 5689999997
No 211
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.05 E-value=0.017 Score=46.17 Aligned_cols=70 Identities=10% Similarity=0.135 Sum_probs=51.2
Q ss_pred cEEEEcCCCC------ccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 117 TTLMIRNIPN------NLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 117 TTVMIRNIPN------k~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
-||+|..++. -++.+...++++.... +|+.--+.+..|- +||.|.+.++|.++++
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~----------~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~- 76 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGS----------YGTIVLVRINQGQ--------MLVTFADSHSALSVLD- 76 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHH----------HSCCSEEEEETTE--------EEEECSCSHHHHHHHH-
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHH----------CCCEEEEEEecCc--------EEEEEcChHHHHHHHh-
Confidence 3999999873 3565544445444321 5666666666665 9999999999999998
Q ss_pred hcCCcccccCCCCCceEEEEe
Q 037791 191 CNKYKWEVEAPGNKKMCEIAC 211 (295)
Q Consensus 191 fnG~~w~~~~~gS~KiceVsy 211 (295)
+||.... .+.+.|.+
T Consensus 77 ldG~~v~------Gr~L~V~~ 91 (95)
T 1ufw_A 77 VDGMKVK------GRAVKISG 91 (95)
T ss_dssp GGGSEET------TEEEEEEC
T ss_pred cCCeeeC------CeEEEEec
Confidence 9999985 56777765
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.16 Score=42.10 Aligned_cols=68 Identities=13% Similarity=0.214 Sum_probs=59.5
Q ss_pred ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK 195 (295)
Q Consensus 116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~ 195 (295)
-.||=|=|||.+++...+++++.+.-.. -.|.+--+||.-|. |=|.|-|.|..+|-++.-.++|..
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i--------~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~e 86 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHI--------NEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQ 86 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCC--------CTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhcc--------CccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCee
Confidence 4588899999999999999999984311 14889999999997 579999999999999999999999
Q ss_pred cc
Q 037791 196 WE 197 (295)
Q Consensus 196 w~ 197 (295)
++
T Consensus 87 f~ 88 (117)
T 2l9w_A 87 FQ 88 (117)
T ss_dssp ET
T ss_pred ec
Confidence 97
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.67 E-value=0.33 Score=39.37 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=45.1
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEE-EecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFL-YLPMDFRRRANLGYAFVNFTTAAGALRFWKA 190 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFl-YLPiDf~t~~N~GYAFVNF~spedA~~F~~~ 190 (295)
+.....+|.|+|||...+++.|.-.|+... .| -.|...-+ |++ +=|.|-|.++++|++-.+.
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~r--rs------GGG~V~~v~~~~---------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRR--RS------GGGPVLSWQRLG---------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTT--TT------CCCCEEEEEEET---------TEEEEEESSHHHHHHHHTC
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCC--cC------CCceeeEEEEcC---------CcEEEEEcChHHHHHHhcC
Confidence 445678999999999999998888888631 01 14555444 555 4689999999999876554
No 214
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=91.28 E-value=0.12 Score=41.53 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=23.9
Q ss_pred CCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791 167 RRANLGYAFVNFTTAAGALRFWKACNK 193 (295)
Q Consensus 167 t~~N~GYAFVNF~spedA~~F~~~fnG 193 (295)
.+...|||||.|.++++|.++++.+++
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred CccccchhHHHHHHHHhHHHHHHhhcc
Confidence 345789999999999999999999885
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=68.49 E-value=17 Score=29.24 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=40.0
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
-++| ..|+.+...||.++|... |.+ -|.+.+ =--|||-|.+++.|..++..+.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~f-------------ggv-----~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAF-------------GNI-----QISWID---DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTT-------------CSC-----CCEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhcc-------------CCE-----EEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 5777 999999999999999973 311 222222 2469999999999988887754
No 216
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=59.96 E-value=5.1 Score=31.82 Aligned_cols=41 Identities=17% Similarity=0.036 Sum_probs=32.1
Q ss_pred CCcceeeEEEecCCHHHHHHHHHHh-cCCcccccCCCCCceEEEEeccC
Q 037791 167 RRANLGYAFVNFTTAAGALRFWKAC-NKYKWEVEAPGNKKMCEIACADI 214 (295)
Q Consensus 167 t~~N~GYAFVNF~spedA~~F~~~f-nG~~w~~~~~gS~KiceVsyAri 214 (295)
...-.|+++|.|.++++|.++++.+ ||..+. . .+.+.+|..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~------G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVD------G-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCC------C-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCC------C-ceecccccC
Confidence 3445699999999999999999999 887764 2 456666653
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=43.89 E-value=17 Score=29.14 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=40.0
Q ss_pred EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192 (295)
Q Consensus 118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn 192 (295)
-++| ..|..+...||.++|.. +| -+++. +.+ =.-|||-|.+++.|..++..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~-------------fg---gv~I~--Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSA-------------FG---NIQIS--WID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTT-------------SE---EEEEE--EEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhc-------------cC---CEEEE--EEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 3567 99999999999999987 34 33332 222 2469999999999998888764
No 218
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=43.69 E-value=37 Score=30.54 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=47.5
Q ss_pred CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791 112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC 191 (295)
Q Consensus 112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f 191 (295)
+...+-.|.|.+ -.+|+.+.|++.|..+|.. . +.|++|....+....||. +...|.. ....
T Consensus 20 ~~~~w~kv~I~~-g~ky~k~~ll~~i~~~~~~-------------~--f~p~~~~~~~~~~~ffV~--~~~~A~~-l~~~ 80 (267)
T 3rw6_A 20 TSKNWFKITIPY-GRKYDKAWLLSMIQSKCSV-------------P--FTPIEFHYENTRAQFFVE--DASTASA-LKAV 80 (267)
T ss_dssp ---CCEEEEETT-GGGSCHHHHHHHHHHTCSS-------------C--CCCEEEEEETTEEEEEES--CHHHHHH-HHHT
T ss_pred CcCCeEEEEecC-ccccCHHHHHHHHHHhCCC-------------C--cEeEEEEEeCCEEEEEeC--ChHHHHH-HHhc
Confidence 356688999999 9999999999999998732 1 235555544555677774 4455554 6689
Q ss_pred cCCcccc
Q 037791 192 NKYKWEV 198 (295)
Q Consensus 192 nG~~w~~ 198 (295)
+|+.|..
T Consensus 81 ~g~i~~~ 87 (267)
T 3rw6_A 81 NYKILDR 87 (267)
T ss_dssp TSSCBCT
T ss_pred CcEEECC
Confidence 9999874
No 219
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=20.13 E-value=58 Score=27.87 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=27.0
Q ss_pred EecccccCCccee-eEEEecCCHHHHHHHHHHhcCC
Q 037791 160 YLPMDFRRRANLG-YAFVNFTTAAGALRFWKACNKY 194 (295)
Q Consensus 160 YLPiDf~t~~N~G-YAFVNF~spedA~~F~~~fnG~ 194 (295)
|..++-.-.-.+| +.+|-|.+.++|++|.+.+.|.
T Consensus 98 ~YVvgS~~~gpMG~~~l~pFa~k~dAe~Fa~~~GG~ 133 (175)
T 2hpu_A 98 FYVVGSARRGGMGAPEAVPFSSRDEAAAFVLAEGGQ 133 (175)
T ss_dssp EEEEESSSSCSSSCCCEEEESCHHHHHHHHHHTEEE
T ss_pred EEEeCCCCCCCCCCCcccCcCCHHHHHHHHHHcCCE
Confidence 3334444455678 9999999999999999998774
Done!