BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037792
(558 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 164/490 (33%), Positives = 240/490 (48%), Gaps = 64/490 (13%)
Query: 3 LTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIP-SSIGKMQGLRL 61
L+ A L LD+S N F G +P G L + +S N+F G +P ++ KM+GL++
Sbjct: 286 LSGACDTLTGLDLSGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 62 LDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTR--LWALYLYNNNFS 119
LD+S N F+GEL +SL SL LDLS+NNF G I PN + L LYL NN F+
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 120 GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLAS 179
GKI L +EL+ L +S N LSG IPS +G+ S L+ L + N+LEG IP + + +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 180 LQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS 238
L+ L + N+L+G + S L N +++ + L NN L G IP R LE
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR---LE---------- 511
Query: 239 NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGF 298
NL L L N G IP +L R L +D++ N NG+IPA + ++G +
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK------QSGKIAAN 565
Query: 299 DIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAG 358
I + Y+ Y+ N DG A N + S + + L
Sbjct: 566 FIAGKRYV---YIKN-------------DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFL------------------------SGSI 394
++++ G + ++ L++S+N L SGSI
Sbjct: 610 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 669
Query: 395 PESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDES 454
P+ +L+ + LDLS NKL+G+IP ++ L L+ D+S NNLSGPIP+ QF TF +
Sbjct: 670 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 729
Query: 455 SYRGNLFLCG 464
+ N LCG
Sbjct: 730 KFLNNPGLCG 739
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 137/443 (30%), Positives = 201/443 (45%), Gaps = 71/443 (16%)
Query: 35 LVYMNISKNSFEGNIPS--SIGKMQGLRLLDVSSN--NFAGELSQSLVINCFSLEWLDLS 90
L +++S+NS G + + S+G GL+ L+VSSN +F G++S L +N SLE LDLS
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN--SLEVLDLS 156
Query: 91 NN-----NFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGH 145
N N VG + + L L + N SG + + R L LD+S+N S
Sbjct: 157 ANSISGANVVGWVLSD--GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG 212
Query: 146 IPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEH 205
IP ++G+ S LQ L +S N L G+ + L++LNIS N G I L L S+++
Sbjct: 213 IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP-IPPLPLKSLQY 270
Query: 206 LYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIP---------- 255
L L N G IP+ F A +TL L L GN+ G +P
Sbjct: 271 LSLAENKFTGEIPD--FLSGACDTL----------TGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 256 ---------------HQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDI 300
L +R L ++D+S N +G +P +TN+ S L D+
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS------LLTLDL 372
Query: 301 VLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLD 360
SN ++ + L N L L N + + EL++ L
Sbjct: 373 S----------SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS-LH 421
Query: 361 LSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP 420
LS N L+G IPS +G L + L L N L G IP+ +K +E+L L N L G+IP
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 421 QLTELHSLSTFDVSYNNLSGPIP 443
L+ +L+ +S N L+G IP
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIP 504
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 127/439 (28%), Positives = 212/439 (48%), Gaps = 68/439 (15%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L L IS N SG + + + L ++++S N+F IP +G L+ LD+S N
Sbjct: 177 LKHLAISGNKISGDVDVSRCV---NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 232
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
+G+ S++ + C L+ L++S+N FVG I P + L L L L N F+G+I D L +
Sbjct: 233 SGDFSRA-ISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 130 TELMV-LDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISE 187
+ + LD+S N G +P + G+ S L+ L++S N G +P+ + L++L++S
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 188 NNLSGSMISTLNLSSVEHLYLQ---NNALGGSIPNTFFRGSALETLDLRINEHSNLRTLL 244
N SG + +L S L L NN G +PN L N + L+ L
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN------------LCQNPKNTLQELY 397
Query: 245 LRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRM 304
L+ N G IP L + +L + +S N L+G+IP+ + ++ S++ + L++
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL--SKLRD---------LKL 446
Query: 305 YLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNN 364
+L+ ML + M E+ L L N
Sbjct: 447 WLN----------------------MLEGEIPQELMYVKTLET-----------LILDFN 473
Query: 365 ELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 424
+LTG+IPS + + N++ ++LS+N L+G IP+ L+ + L LS+N +G IP +L +
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 425 LHSLSTFDVSYNNLSGPIP 443
SL D++ N +G IP
Sbjct: 534 CRSLIWLDLNTNLFNGTIP 552
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 127/313 (40%), Gaps = 67/313 (21%)
Query: 185 ISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGS------------------- 225
+S ++++GS+ +S+ L L N+L G + GS
Sbjct: 81 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 140
Query: 226 --------ALETLDLRINEHSN--------------LRTLLLRGNYLQGPIPHQLCHLRK 263
+LE LDL N S L+ L + GN + G + C
Sbjct: 141 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC--VN 198
Query: 264 LGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVEL-L 322
L +D+S N + IP + L DI D S ++ EL L
Sbjct: 199 LEFLDVSSNNFSTGIPFL--------GDCSALQHLDISGNKLSGD--FSRAISTCTELKL 248
Query: 323 LDGNDGRMLGALVAVNF-------MTKNRYESYKGDIL----ELMAGLDLSNNELTGDIP 371
L+ + + +G + + + +N++ D L + + GLDLS N G +P
Sbjct: 249 LNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Query: 372 SEIGDLQNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIPPQLTELH-SLS 429
G + L LS N SG +P ++ ++ ++ LDLS N+ +G++P LT L SL
Sbjct: 309 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 368
Query: 430 TFDVSYNNLSGPI 442
T D+S NN SGPI
Sbjct: 369 TLDLSSNNFSGPI 381
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 164/490 (33%), Positives = 240/490 (48%), Gaps = 64/490 (13%)
Query: 3 LTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIP-SSIGKMQGLRL 61
L+ A L LD+S N F G +P G L + +S N+F G +P ++ KM+GL++
Sbjct: 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 62 LDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTR--LWALYLYNNNFS 119
LD+S N F+GEL +SL SL LDLS+NNF G I PN + L LYL NN F+
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 120 GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLAS 179
GKI L +EL+ L +S N LSG IPS +G+ S L+ L + N+LEG IP + + +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 180 LQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS 238
L+ L + N+L+G + S L N +++ + L NN L G IP R LE
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR---LE---------- 514
Query: 239 NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGF 298
NL L L N G IP +L R L +D++ N NG+IPA + ++G +
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK------QSGKIAAN 568
Query: 299 DIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAG 358
I + Y+ Y+ N DG A N + S + + L
Sbjct: 569 FIAGKRYV---YIKN-------------DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFL------------------------SGSI 394
++++ G + ++ L++S+N L SGSI
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Query: 395 PESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDES 454
P+ +L+ + LDLS NKL+G+IP ++ L L+ D+S NNLSGPIP+ QF TF +
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 732
Query: 455 SYRGNLFLCG 464
+ N LCG
Sbjct: 733 KFLNNPGLCG 742
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 137/443 (30%), Positives = 201/443 (45%), Gaps = 71/443 (16%)
Query: 35 LVYMNISKNSFEGNIPS--SIGKMQGLRLLDVSSN--NFAGELSQSLVINCFSLEWLDLS 90
L +++S+NS G + + S+G GL+ L+VSSN +F G++S L +N SLE LDLS
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN--SLEVLDLS 159
Query: 91 NN-----NFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGH 145
N N VG + + L L + N SG + + R L LD+S+N S
Sbjct: 160 ANSISGANVVGWVLSD--GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG 215
Query: 146 IPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEH 205
IP ++G+ S LQ L +S N L G+ + L++LNIS N G I L L S+++
Sbjct: 216 IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP-IPPLPLKSLQY 273
Query: 206 LYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIP---------- 255
L L N G IP+ F A +TL L L GN+ G +P
Sbjct: 274 LSLAENKFTGEIPD--FLSGACDTL----------TGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 256 ---------------HQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDI 300
L +R L ++D+S N +G +P +TN+ S L D+
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS------LLTLDL 375
Query: 301 VLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLD 360
SN ++ + L N L L N + + EL++ L
Sbjct: 376 S----------SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS-LH 424
Query: 361 LSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP 420
LS N L+G IPS +G L + L L N L G IP+ +K +E+L L N L G+IP
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 421 QLTELHSLSTFDVSYNNLSGPIP 443
L+ +L+ +S N L+G IP
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIP 507
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 127/439 (28%), Positives = 212/439 (48%), Gaps = 68/439 (15%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L L IS N SG + + + L ++++S N+F IP +G L+ LD+S N
Sbjct: 180 LKHLAISGNKISGDVDVSRCV---NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
+G+ S++ + C L+ L++S+N FVG I P + L L L L N F+G+I D L +
Sbjct: 236 SGDFSRA-ISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 130 TELMV-LDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISE 187
+ + LD+S N G +P + G+ S L+ L++S N G +P+ + L++L++S
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 188 NNLSGSMISTLNLSSVEHLYLQ---NNALGGSIPNTFFRGSALETLDLRINEHSNLRTLL 244
N SG + +L S L L NN G +PN L N + L+ L
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN------------LCQNPKNTLQELY 400
Query: 245 LRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRM 304
L+ N G IP L + +L + +S N L+G+IP+ + ++ S++ + L++
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL--SKLRD---------LKL 449
Query: 305 YLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNN 364
+L+ ML + M E+ L L N
Sbjct: 450 WLN----------------------MLEGEIPQELMYVKTLET-----------LILDFN 476
Query: 365 ELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 424
+LTG+IPS + + N++ ++LS+N L+G IP+ L+ + L LS+N +G IP +L +
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 425 LHSLSTFDVSYNNLSGPIP 443
SL D++ N +G IP
Sbjct: 537 CRSLIWLDLNTNLFNGTIP 555
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 127/313 (40%), Gaps = 67/313 (21%)
Query: 185 ISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGS------------------- 225
+S ++++GS+ +S+ L L N+L G + GS
Sbjct: 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 226 --------ALETLDLRINEHS--------------NLRTLLLRGNYLQGPIPHQLCHLRK 263
+LE LDL N S L+ L + GN + G + C
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC--VN 201
Query: 264 LGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVEL-L 322
L +D+S N + IP + L DI D S ++ EL L
Sbjct: 202 LEFLDVSSNNFSTGIPFL--------GDCSALQHLDISGNKLSGD--FSRAISTCTELKL 251
Query: 323 LDGNDGRMLGALVAVNF-------MTKNRYESYKGDIL----ELMAGLDLSNNELTGDIP 371
L+ + + +G + + + +N++ D L + + GLDLS N G +P
Sbjct: 252 LNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 372 SEIGDLQNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIPPQLTELH-SLS 429
G + L LS N SG +P ++ ++ ++ LDLS N+ +G++P LT L SL
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371
Query: 430 TFDVSYNNLSGPI 442
T D+S NN SGPI
Sbjct: 372 TLDLSSNNFSGPI 384
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 97/204 (47%), Gaps = 21/204 (10%)
Query: 92 NNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG 151
NN VG I P LT+L LY+ + N SG I D L + L+ LD S N LSG +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 152 NFSTLQILSMSKNLLEGNIPVQFNNLASL-QILNISENNLSGSMIST---LNLSSVEHLY 207
+ L ++ N + G IP + + + L + IS N L+G + T LNL+ V+
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD--- 203
Query: 208 LQNNALGGSIPNTFFRGSALETLDLRINEHS------------NLRTLLLRGNYLQGPIP 255
L N L G F GS T + + ++S NL L LR N + G +P
Sbjct: 204 LSRNMLEGDASVLF--GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261
Query: 256 HQLCHLRKLGIMDISHNRLNGSIP 279
L L+ L +++S N L G IP
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 107/248 (43%), Gaps = 44/248 (17%)
Query: 248 NYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLD 307
N L GPIP + L +L + I+H ++G+IP S+++ F
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-----FLSQIKTLVTLDFSYNALSGTL 141
Query: 308 DAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELT 367
+S+ N V + DGN R+ GA+ +SY G +L + +S N LT
Sbjct: 142 PPSISSLPN-LVGITFDGN--RISGAIP----------DSY-GSFSKLFTSMTISRNRLT 187
Query: 368 GDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIES--------------------- 406
G IP +L N+ ++LS N L G F + K +
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 407 --LDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCG 464
LDL +N++ G +P LT+L L + +VS+NNL G IP FD S+Y N LCG
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Query: 465 PAINKGCT 472
+ CT
Sbjct: 307 SPL-PACT 313
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 90/235 (38%), Gaps = 52/235 (22%)
Query: 32 LPKLVYMNISK-NSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLS 90
LP L ++ I N+ G IP +I K+ L L ++ N +G + L +L LD S
Sbjct: 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFS 133
Query: 91 NNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMV-LDISNNRLSGHIPSW 149
N G + P+ +L L + N SG I D ++L + IS NRL+G IP
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 150 MGNFSTLQILSMSKNLLEGN---------------------------------------- 169
N + L + +S+N+LEG+
Sbjct: 194 FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252
Query: 170 -------IPVQFNNLASLQILNISENNLSGSMISTLNLSSVE-HLYLQNNALGGS 216
+P L L LN+S NNL G + NL + Y N L GS
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 6/148 (4%)
Query: 18 NSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSL 77
N SG +P + G M IS+N G IP + + L +D+S N G+ S L
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-VL 216
Query: 78 VINCFSLEWLDLSNNNFVGQIFPNYMNLTR-LWALYLYNNNFSGKIKDGLLRSTELMVLD 136
+ + + + L+ N+ + + L++ L L L NN G + GL + L L+
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDL--GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 137 ISNNRLSGHIPSWMGNFSTLQILSMSKN 164
+S N L G IP GN + + + N
Sbjct: 275 VSFNNLCGEIPQG-GNLQRFDVSAYANN 301
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 13/197 (6%)
Query: 30 IVLPKLVYMNISKN--SFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87
+ LP L ++++S+N SF+G S L+ LD+S N S L + LE L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE--QLEHL 401
Query: 88 DLSNNNFVG----QIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLS 143
D ++N +F + NL L + + I +GL + L VL ++ N
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL---SSLEVLKMAGNSFQ 458
Query: 144 GH-IPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLN-LS 201
+ +P L L +S+ LE P FN+L+SLQ+LN++ N L + L+
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518
Query: 202 SVEHLYLQNNALGGSIP 218
S++ ++L N S P
Sbjct: 519 SLQKIWLHTNPWDCSCP 535
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 374 IGDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 428
IG L+ + LN++HN + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 96/407 (23%), Positives = 175/407 (42%), Gaps = 73/407 (17%)
Query: 131 ELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL 190
+L VL+++ N+++ LQ+L++S NLL F L + +++ +N++
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350
Query: 191 SGSMISTLN-LSSVEHLYLQNNALGG-----SIPNTFFRGSALETLDLRINEHSNLRTLL 244
+ T L ++ L L++NAL SIP+ F G+ L TL +IN +NL +
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP-KINLTANL--IH 407
Query: 245 LRGNYLQG-PIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLR 303
L N L+ I + L + L I+ ++ NR + +C + S
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFS----SCSGDQTPSE-------------- 449
Query: 304 MYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSN 363
N ++E L G + ++ + + T+ ++ ++G L + L L++
Sbjct: 450 ------------NPSLEQLFLGEN------MLQLAWETELCWDVFEG--LSHLQVLYLNH 489
Query: 364 NELTGDIPSEIGDLQNIHGLNLSHNFLS----GSIPESFSNLKMIESLDLSHNKLNGQIP 419
N L P L + GL+L+ N L+ +P + +E LD+S N+L +
Sbjct: 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN------LEILDISRNQL---LA 540
Query: 420 PQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINKGCTNLPE--- 476
P SLS D+++N + STF N+ + GP + C P+
Sbjct: 541 PNPDVFVSLSVLDITHNKFICEC----ELSTFINWLNHTNVTIAGPPADIYCV-YPDSFS 595
Query: 477 ---LLEPSSKGAEDESEVDLVAFYWSFVASCVTVMLGLLAILWVNPY 520
L S++G ++E + + F F+ VT+ L L+ IL V +
Sbjct: 596 GVSLFSLSTEGCDEEEVLKSLKFSL-FIVCTVTLTLFLMTILTVTKF 641
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 379 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYN 436
++ L+LSH F+ F LK ++ L+L++NK+N L +L ++SYN
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 112/278 (40%), Gaps = 34/278 (12%)
Query: 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVS 65
A+ + LD+S + F L + L L +N++ N + + L++L++S
Sbjct: 264 ARSSVRHLDLS-HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 66 SNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNN-----NFSG 120
N GEL S + ++DL N+ + L +L L L +N +F
Sbjct: 323 YN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381
Query: 121 KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG-NIPVQFNNLAS 179
I D L +L+ L N T ++ +S+N LE +I +
Sbjct: 382 SIPDIFLSGNKLVTLPKIN--------------LTANLIHLSENRLENLDILYFLLRVPH 427
Query: 180 LQILNISENNLS---GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE 236
LQIL +++N S G + N S+E L+L N L + T E L
Sbjct: 428 LQILILNQNRFSSCSGDQTPSEN-PSLEQLFLGENMLQLAW-ETELCWDVFEGL------ 479
Query: 237 HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRL 274
S+L+ L L NYL P HL L + ++ NRL
Sbjct: 480 -SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPES--FSNLKMIESLDLSHNKLNG 416
LDL ++++ P L ++ L L LS ++ + F NLK + LDLS N++
Sbjct: 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137
Query: 417 -QIPPQLTELHSLSTFDVSYNNL 438
+ P +L+SL + D S N +
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQI 160
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 30 IVLPKLVYMNISKN--SFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87
+ LP L ++++S+N SF+G S L+ LD+S N S L + LE L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE--QLEHL 401
Query: 88 DLSNNNFVG----QIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLS 143
D ++N +F + NL L + + I +GL + L VL ++ N
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL---SSLEVLKMAGNSFQ 458
Query: 144 GH-IPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL 190
+ +P L L +S+ LE P FN+L+SLQ+LN+S NN
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 374 IGDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 428
IG L+ + LN++HN + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 7/189 (3%)
Query: 9 GLHSLDISRN--SFSGKLPQ-NMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVS 65
L LD+SRN SF G Q + G L Y+++S N + S+ ++ L LD
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTT--SLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQ 404
Query: 66 SNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK-IKD 124
+N S+ ++ +L +LD+S+ + + L+ L L + N+F + D
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 125 GLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILN 184
L LD+S +L P+ + S+LQ+L+MS N + L SLQ+L+
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 524
Query: 185 ISENNLSGS 193
S N++ S
Sbjct: 525 YSLNHIMTS 533
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 87/234 (37%), Gaps = 75/234 (32%)
Query: 177 LASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALG--GSIPNTFFRGSALETLDLRI 234
L SL+ L + N G+ S ++L S+E L L N L G + F ++L+ LDL
Sbjct: 324 LKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 235 N--------------------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRL 274
N +HSNL+ + +L LR L +DISH
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS---------LRNLIYLDISHTH- 432
Query: 275 NGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGAL 334
T + F+ + NG S++E+L +M G
Sbjct: 433 --------TRVAFNGIFNGL----------------------SSLEVL------KMAGNS 456
Query: 335 VAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHN 388
NF+ E L + LDLS +L P+ L ++ LN+SHN
Sbjct: 457 FQENFLPDIFTE------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 388 NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNL 438
+F +P+ F+ L+ + LDLS +L P L SL ++S+NN
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 30 IVLPKLVYMNISKN--SFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87
+ LP L ++++S+N SF+G S L+ LD+S N S L + LE L
Sbjct: 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLE--QLEHL 425
Query: 88 DLSNNNFVG----QIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLS 143
D ++N +F + NL L + + I +GL + L VL ++ N
Sbjct: 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL---SSLEVLKMAGNSFQ 482
Query: 144 GH-IPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL 190
+ +P L L +S+ LE P FN+L+SLQ+LN+S NN
Sbjct: 483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 374 IGDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 428
IG L+ + LN++HN + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 9 GLHSLDISRN--SFSGKLPQ-NMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVS 65
L LD+SRN SF G Q + G + L Y+++S N + S+ ++ L LD
Sbjct: 372 SLEFLDLSRNGLSFKGCCSQSDFGTI--SLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQ 428
Query: 66 SNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK-IKD 124
+N S+ ++ +L +LD+S+ + + L+ L L + N+F + D
Sbjct: 429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 488
Query: 125 GLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILN 184
L LD+S +L P+ + S+LQ+L+MS N + L SLQ+L+
Sbjct: 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548
Query: 185 ISENNLSGS 193
S N++ S
Sbjct: 549 YSLNHIMTS 557
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 388 NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNL 438
+F +P+ F+ L+ + LDLS +L P L SL ++S+NN
Sbjct: 480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 110/273 (40%), Gaps = 40/273 (14%)
Query: 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
GL LD++ S +LP + + L L + +S N FE S L L + N
Sbjct: 279 GLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM--NLTRLWALYL-YNNNFSGKIKDG 125
EL + N +L LDLS+++ N NL+ L +L L YN S K +
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT-EA 395
Query: 126 LLRSTELMVLDISNNRLS-GHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILN 184
+L +LD++ RL S N L++L++S +LL+ + F+ L +LQ LN
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455
Query: 185 ISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLL 244
+ N+ I N +L+TL L L+
Sbjct: 456 LQGNHFPKGNIQKTN--------------------------SLQTL-------GRLEILV 482
Query: 245 LRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGS 277
L L H L+ + +D+SHNRL S
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 126/296 (42%), Gaps = 27/296 (9%)
Query: 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191
L LD++ LS +PS + STL+ L +S N E + +N SL L+I N
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 192 GSMISTL--NLSSVEHLYLQNNALGGS-IPNTFFRG-SALETLDLRINEHSNLRTLLLRG 247
+ + NL ++ L L ++ + S N R S L++L+L NE +L+T +
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK- 397
Query: 248 NYLQGPIPHQLCHLRKLGIMDISHNRLN-GSIPACITNMLFSRVENGYLYGFDIVLRMYL 306
+ P +L ++D++ RL + N+ +V N DI
Sbjct: 398 ---ECP---------QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445
Query: 307 DDAYVSNYYNSTVELLLDGNDGRM-----LGAL--VAVNFMTKNRYESYKGDILELMAGL 359
D + N GN + LG L + ++F + + + L++M +
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505
Query: 360 DLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 415
DLS+N LT + L+ I+ LNL+ N +S +P L +++L N L+
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 20/134 (14%)
Query: 320 ELLLDGNDGRMLGALVAVNFMTKNRYESYKGDI--LELMAG----------LDLSNNEL- 366
+L+L N L + A NF + S KG+ LEL G LDLS++++
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHL-SIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363
Query: 367 TGDIPS-EIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL---NGQIPPQL 422
T D + ++ +L ++ LNLS+N E+F +E LDL+ +L + Q P Q
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ- 422
Query: 423 TELHSLSTFDVSYN 436
LH L ++S++
Sbjct: 423 -NLHLLKVLNLSHS 435
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 88/199 (44%), Gaps = 17/199 (8%)
Query: 3 LTSAQHGLHS----LDISRNSFSGKLPQNMGIVLPKLVYMNISKN--SFEGNIPSSIGKM 56
LTS G+ S L++ N LP + L +L +++S N SF+G S
Sbjct: 19 LTSVPTGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77
Query: 57 QGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVG----QIFPNYMNLTRLWALY 112
L+ LD+S N S L + LE LD ++N +F + NL L +
Sbjct: 78 TSLKYLDLSFNGVITMSSNFLGLE--QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135
Query: 113 LYNNNFSGKIKDGLLRSTELMVLDISNNRLSGH-IPSWMGNFSTLQILSMSKNLLEGNIP 171
+ I +GL + L VL ++ N + +P L L +S+ LE P
Sbjct: 136 THTRVAFNGIFNGL---SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192
Query: 172 VQFNNLASLQILNISENNL 190
FN+L+SLQ+LN+S NN
Sbjct: 193 TAFNSLSSLQVLNMSHNNF 211
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 87 LDLSN---NNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLS 143
LDLSN N IF Y LTRL+ N N ++ + + L VLD+S+NRL+
Sbjct: 229 LDLSNLQIFNISANIF-KYDFLTRLY----LNGNSLTELPAEIKNLSNLRVLDLSHNRLT 283
Query: 144 GHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSV 203
+P+ +G+ L+ N++ +P +F NL +LQ L + N L + L SV
Sbjct: 284 S-LPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV 341
Query: 204 EHL--YLQNNALGGSIPN 219
L YL++N +P+
Sbjct: 342 TGLIFYLRDNRPEIPLPH 359
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 240 LRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFD 299
L L L GN L +P ++ +L L ++D+SHNRL S+PA L S + Y Y FD
Sbjct: 249 LTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPA----ELGSCFQLKYFYFFD 302
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 24/118 (20%)
Query: 354 ELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSG--------------------- 392
+ + L L+ N LT ++P+EI +L N+ L+LSHN L+
Sbjct: 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV 305
Query: 393 -SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLS-TFDVSYNNLSGPIPDKEQF 448
++P F NL ++ L + N L Q LTE F + N P+P + +F
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRF 363
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 32/181 (17%)
Query: 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS--TELMVLDISNN 140
S +L+ + N F +F L RL L L N K L+ + L LD+S N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 141 RLSGHIPSWMGNFS-TLQILSMSKNLLEGN---------------------IPVQFNNLA 178
L+ H ++ ++ +L++S N+L G+ IP +L
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQ 473
Query: 179 SLQILNISENNLSGSMISTLN-LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEH 237
+LQ LN++ N L + L+S+++++L +N + P + L IN+H
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKH 526
Query: 238 S 238
S
Sbjct: 527 S 527
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 36 VYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVI-NCFSLEWLDLSNNNF 94
++N ++N F ++ ++ L+ L + N +L+ N SLE LD+S N+
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415
Query: 95 VGQIFPNYMNLTRLWA-----LYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW 149
+ + T WA L L +N +G + L ++ VLD+ NNR+ IP
Sbjct: 416 NSHAY----DRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMS-IPKD 468
Query: 150 MGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188
+ + LQ L+++ N L+ F+ L SLQ + + +N
Sbjct: 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 378 QNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNN 437
++I LNLS N L+GS+ ++ LDL +N++ IP +T L +L +V+ N
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQ 484
Query: 438 LSGPIPD 444
L +PD
Sbjct: 485 LKS-VPD 490
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 383 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG--QIPPQLTELHSLSTFDVSYNNLSG 440
LN + N + S+ + S LK +++L L N L ++ + SL T DVS N+L+
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 441 PIPDK-----EQFSTFDESS--YRGNLFLCGP 465
D+ E + SS G++F C P
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHI 146
L LS N+ P+ L+ L L L +N L + +L LD+S+NRL
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116
Query: 147 PSWMGNFSTLQILSMSKNLLEGNIPV--QFNNLASLQILNISENNLSGSMISTLNLSSVE 204
M +L+ L +S N + +PV +F NL L L LS + L+L V
Sbjct: 117 CCPMA---SLRHLDLSFNDFDV-LPVCKEFGNLTKLTFL-----GLSAAKFRQLDLLPVA 167
Query: 205 HLYL 208
HL+L
Sbjct: 168 HLHL 171
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 374 IGDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 428
IG L+ + LN++HN + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 374 IGDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 428
IG L+ + LN++HN + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 374 IGDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 428
IG L+ + LN++HN + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 374 IGDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 428
IG L+ + LN++HN + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 374 IGDLQNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 428
IG L+ + LN++HN + S +PE FSNL +E LDLS NK+ L LH +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 111 LYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNI 170
LYL N F+ K+ L L ++D+SNNR+S N + L L +S N L
Sbjct: 36 LYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 171 PVQFNNLASLQILNISENNLSGSMISTLN-LSSVEHLYLQNNAL 213
P F+ L SL++L++ N++S N LS++ HL + N L
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 370 IPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLS 429
+P E+ + +++ ++LS+N +S +SFSN+ + +L LS+N+L P L SL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 430 TFDVSYNNLS 439
+ N++S
Sbjct: 106 LLSLHGNDIS 115
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 86 WLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGH 145
+LD + V + NY +LT + L NN S T+L+ L +S NRL
Sbjct: 37 YLDGNQFTLVPKELSNYKHLT---LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 146 IPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL 190
P +L++LS+ N + FN+L++L L I N L
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 149/335 (44%), Gaps = 61/335 (18%)
Query: 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPS 148
L NNN + I P NLT L L L+NN + D L T L L++S+N +S S
Sbjct: 91 LMNNNQIADITP-LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--S 145
Query: 149 WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLY 207
+ ++LQ LS S N + P+ NL +L+ L+IS N +S IS L L+++E L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKPLA--NLTTLERLDISSNKVSD--ISVLAKLTNLESLI 201
Query: 208 LQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIM 267
NN + P + +NL L L GN L+ L L L +
Sbjct: 202 ATNNQISDITP---------------LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL 244
Query: 268 DISHNRLNGSIP-ACITNML-----FSRVEN-GYLYGFDIVLRMYL------DDAYVSNY 314
D+++N+++ P + +T + +++ N L G + + L D + +SN
Sbjct: 245 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 304
Query: 315 YNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEI 374
N T L N + + V+ +TK + L SNN+++ D+ S +
Sbjct: 305 KNLTYLTLYFNN----ISDISPVSSLTK-------------LQRLFFSNNKVS-DV-SSL 345
Query: 375 GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 409
+L NI+ L+ HN +S P +NL I L L
Sbjct: 346 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG-Q 417
L+LS+N ++ DI S + L ++ L+ S N ++ P +NL +E LD+S NK++
Sbjct: 134 LELSSNTIS-DI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS 189
Query: 418 IPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGN 459
+ +LT L SL ++ NN I + DE S GN
Sbjct: 190 VLAKLTNLESL----IATNNQISDITPLGILTNLDELSLNGN 227
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 37/299 (12%)
Query: 174 FNNLASLQILNISENNLSGSMIST---LNLSSVEHLYLQNNALGGSIPNTFFRG-SALET 229
FN LA+L++L +++ NL G+++S L+S+E L L++N + P +FF
Sbjct: 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158
Query: 230 LDLRINEHSNL---RTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRL------NGSIPA 280
LDL N+ ++ L +G + L L + + D++ L N
Sbjct: 159 LDLTFNKVKSICEEDLLNFQGKHFT------LLRLSSITLQDMNEYWLGWEKCGNPFKNT 212
Query: 281 CITNMLFSRVENGYLYG-----FDIVLRMYLDDAYVSNYYN---STVELLLDGNDGRMLG 332
IT + S NG+ FD + + +SN YN S D
Sbjct: 213 SITTLDLS--GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270
Query: 333 ALVAVNFMTKNRYESYKGDILEL-------MAGLDLSNNELTGDIPSEIGDLQNIHGLNL 385
L A T + +S +L+ + L L+ NE+ + L ++ LNL
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330
Query: 386 SHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444
S NFL F NL +E LDLS+N + L +L + N L +PD
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD 388
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 17/197 (8%)
Query: 55 KMQGLRLLDVSSNNFAGELSQSL--VINCFSLEWLDLSNNNFVGQIF-------PNYMNL 105
K + LD+S N F +++ I ++ L LSN+ +G F P+
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 106 TRLWALYLYNNNFSGKIKDGLLRS-----TELMVLDISNNRLSGHIPSWMGNFSTLQILS 160
L A + + S LL+S T+L L ++ N ++ + + L L+
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329
Query: 161 MSKNLLEGNIPVQFNNLASLQILNISENNLSG-SMISTLNLSSVEHLYLQNNALGGSIPN 219
+S+N L F NL L++L++S N++ S L L +++ L L N L S+P+
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-KSVPD 388
Query: 220 TFF-RGSALETLDLRIN 235
F R ++L+ + L N
Sbjct: 389 GIFDRLTSLQKIWLHTN 405
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 13 LDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGE 72
LD+S N+ S + L L + +S N + + LR LD+SSN+
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT- 102
Query: 73 LSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFS----GKIKDGLLR 128
L + L + +LE L L NN+ V + ++ +L LYL N S IKDG +
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG-NK 161
Query: 129 STELMVLDISNNRLSG-------HIPSWMGN 152
+LM+LD+S+N+L +P+W+ N
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 357 AGLDLSNNELTGDIPSE--IGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 414
A LDLS+N L+ + +E L N+H L LSHN L+ E+F + + LDLS N L
Sbjct: 42 ALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 415 N 415
+
Sbjct: 101 H 101
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFS--GKIKDGLLRSTELMVLDISNNRLSG 144
LD SNN +F N +LT L L L N KI + + L LDIS N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 145 HIP----SWMGNFSTLQILSMSKNLLEGNIPVQFNNL-ASLQILNISENNLSGSMISTLN 199
SW +L L+MS N+L I F L +++L++ N + +
Sbjct: 389 DEKKGDCSWTK---SLLSLNMSSNILTDTI---FRCLPPRIKVLDLHSNKIKSIPKQVVK 442
Query: 200 LSSVEHLYLQNNALGGSIPNTFF-RGSALETLDLRIN 235
L +++ L + +N L S+P+ F R ++L+ + L N
Sbjct: 443 LEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTN 478
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 352 ILELMAGLDLSNNELTGD------IPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 405
I E+ + +++ N ++G PS+I +H L+ S+N L+ ++ E+ +L +E
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF--LH-LDFSNNLLTDTVFENCGHLTELE 351
Query: 406 SLDLSHNKLN--GQIPPQLTELHSLSTFDVSYNNLS 439
+L L N+L +I T++ SL D+S N++S
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 53/129 (41%)
Query: 73 LSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTEL 132
LS + + L L L+NN + +LT+L LYL N R T+L
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133
Query: 133 MVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSG 192
L ++ N+L + LQ LS+S N L+ F+ L LQ + + N
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193
Query: 193 SMISTLNLS 201
S TL LS
Sbjct: 194 SRCETLYLS 202
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 346 ESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 405
E D+ A LDL NN++T + +L+N+H L L +N +S P +F+ L +E
Sbjct: 44 EKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103
Query: 406 SLDLSHNKLN---GQIPPQLTELH 426
L LS N+L ++P L EL
Sbjct: 104 RLYLSKNQLKELPEKMPKTLQELR 127
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISNNRLSGH 145
LDL NN ++ NL L L L NN S KI G +L L +S N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 146 IPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIS 196
+P M TLQ L + +N + FN L + ++ + N L S I
Sbjct: 115 LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 346 ESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 405
E D+ A LDL NN++T + +L+N+H L L +N +S P +F+ L +E
Sbjct: 44 EKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103
Query: 406 SLDLSHNKLN---GQIPPQLTELH 426
L LS N+L ++P L EL
Sbjct: 104 RLYLSKNQLKELPEKMPKTLQELR 127
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISNNRLSGH 145
LDL NN ++ NL L L L NN S KI G +L L +S N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 146 IPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIS 196
+P M TLQ L + +N + FN L + ++ + N L S I
Sbjct: 115 LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 149/351 (42%), Gaps = 41/351 (11%)
Query: 135 LDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSG-S 193
L++ +R S + F+ LQ L ++ L+G +P L L+ L +S N+
Sbjct: 256 LNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLC 314
Query: 194 MISTLNLSSVEHLYLQNNA----LG-------GSIPNTFFRGSALETLD---LRINEHSN 239
IS N S+ HLY++ N LG G++ + +E D L++ S+
Sbjct: 315 QISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSH 374
Query: 240 LRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPAC-ITNMLFSRVEN------ 292
L+TL L N G +L ++D++ RL+ + P N+ F +V N
Sbjct: 375 LQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFL 434
Query: 293 -----GYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYES 347
L G ++ + L + + + LL +L L + ++ ++
Sbjct: 435 DTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVL-ILSSCGLLSIDQQAF 493
Query: 348 YKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESL 407
+ L M+ +DLS+N LT D + L+ I+ LNL+ N ++ P L ++
Sbjct: 494 HS---LGKMSHVDLSHNSLTCDSIDSLSHLKGIY-LNLAANSINIISPRLLPILSQQSTI 549
Query: 408 DLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRG 458
+LSHN L+ + +H L+ + + + L G E+ + + S RG
Sbjct: 550 NLSHNPLDCTC----SNIHFLTWYKENLHKLEG----SEETTCANPPSLRG 592
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 9/196 (4%)
Query: 10 LHSLDISRNSFSGKLPQNM-GI-VLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSN 67
L LD++ G LP M G+ +L KLV +S N F+ S L L + N
Sbjct: 277 LQELDLTATHLKG-LPSGMKGLNLLKKLV---LSVNHFDQLCQISAANFPSLTHLYIRGN 332
Query: 68 NFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM--NLTRLWALYLYNNNFSGKIKDG 125
L + +L+ LDLS+N+ + NL+ L L L +N G
Sbjct: 333 VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQA 392
Query: 126 LLRSTELMVLDISNNRLSGHIP-SWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILN 184
+L +LD++ RL + P S N LQ+L+++ L+ + L L+ LN
Sbjct: 393 FKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLN 452
Query: 185 ISENNLSGSMISTLNL 200
+ N+ I+ NL
Sbjct: 453 LKGNHFQDGTITKTNL 468
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 148/335 (44%), Gaps = 61/335 (18%)
Query: 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPS 148
L NNN + I P NLT L L L+NN + D L T L L++S+N +S S
Sbjct: 91 LMNNNQIADITP-LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--S 145
Query: 149 WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLY 207
+ ++LQ LS S N + P+ NL +L+ L+IS N +S IS L L+++E L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKPLA--NLTTLERLDISSNKVSD--ISVLAKLTNLESLI 201
Query: 208 LQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIM 267
NN + P + +NL L L GN L+ L L L +
Sbjct: 202 ATNNQISDITP---------------LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL 244
Query: 268 DISHNRLNGSIP-ACITNML-----FSRVEN-GYLYGFDIVLRMYL------DDAYVSNY 314
D+++N+++ P + +T + +++ N L G + + L D + +SN
Sbjct: 245 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 304
Query: 315 YNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEI 374
N T L N + + V+ +TK + L NN+++ D+ S +
Sbjct: 305 KNLTYLTLYFNN----ISDISPVSSLTK-------------LQRLFFYNNKVS-DV-SSL 345
Query: 375 GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 409
+L NI+ L+ HN +S P +NL I L L
Sbjct: 346 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG-Q 417
L+LS+N ++ DI S + L ++ L+ S N ++ P +NL +E LD+S NK++
Sbjct: 134 LELSSNTIS-DI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS 189
Query: 418 IPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGN 459
+ +LT L SL ++ NN I + DE S GN
Sbjct: 190 VLAKLTNLESL----IATNNQISDITPLGILTNLDELSLNGN 227
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 156 LQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLN-LSSVEHLYLQNNALG 214
L+IL +SKNL+ FN L SL L + +N L+ LS + L+L+NN +
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI- 119
Query: 215 GSIPN-TFFRGSALETLDL 232
SIP+ F R +L LDL
Sbjct: 120 ESIPSYAFNRVPSLRRLDL 138
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%)
Query: 356 MAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 415
+ L+LS N L P L ++ L L H ++ +F +LK +E L+LSHN L
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM 239
Query: 416 GQIPPQLTELHSLSTFDVSYN 436
T LH L +++N
Sbjct: 240 SLPHDLFTPLHRLERVHLNHN 260
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 347 SYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIES 406
S + E + LDLSNN +T S++ N+ L L+ N ++ +SFS+L +E
Sbjct: 19 SIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 78
Query: 407 LDLSHNKLN 415
LDLS+N L+
Sbjct: 79 LDLSYNYLS 87
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRL 142
+++ LDLSNN + L AL L +N + +D L LD+S N L
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 143 SGHIPSWMGNFSTLQILSM----SKNLLEGNIPVQFNNLASLQILNI 185
S SW S+L L++ K L E ++ F++L LQIL +
Sbjct: 87 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL---FSHLTKLQILRV 130
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 352 ILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSH 411
+ E + LDLSNN +T S++ N+ L L+ N ++ +SFS+L +E LDLS+
Sbjct: 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109
Query: 412 NKLN 415
N L+
Sbjct: 110 NYLS 113
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHI 146
LDLSNN + L AL L +N + +D L LD+S N LS
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 147 PSWMGNFSTLQILSM----SKNLLEGNIPVQFNNLASLQILNI 185
SW S+L L++ K L E ++ F++L LQIL +
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSL---FSHLTKLQILRV 156
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 107/245 (43%), Gaps = 26/245 (10%)
Query: 13 LDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGE 72
L + RN S LP+ + PKL +++S N+ E + L+ L +SSN
Sbjct: 122 LVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-H 179
Query: 73 LSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTEL 132
+ SL+ + F ++S N P + + L A + N G + + EL
Sbjct: 180 VDLSLIPSLFH---ANVSYNLLSTLAIP--IAVEELDASHNSINVVRGPV------NVEL 228
Query: 133 MVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN---- 188
+L + +N L+ +W+ N+ L + +S N LE + F + L+ L IS N
Sbjct: 229 TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286
Query: 189 -NLSGSMISTLNLSSVEHLYL----QNNALGGSIPNTFFRGSALETLDLRINEHSNLRTL 243
NL G I TL + + H +L +N + N + +++ T L+++ H L+ L
Sbjct: 287 LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT--LKLSTHHTLKNL 344
Query: 244 LLRGN 248
L N
Sbjct: 345 TLSHN 349
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 88/219 (40%), Gaps = 43/219 (19%)
Query: 102 YMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLS----GHIPSWMGNFSTLQ 157
+ N +L L + NNN D +T L L +S+NRL+ IPS +
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 196
Query: 158 ILSM---------------SKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSS 202
+LS S N++ G + V+ L IL + NNL+ + LN
Sbjct: 197 LLSTLAIPIAVEELDASHNSINVVRGPVNVE------LTILKLQHNNLTDTAW-LLNYPG 249
Query: 203 VEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLR 262
+ + L N L + + F + LE L + SN R + L N PIP
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYI-----SNNRLVAL--NLYGQPIP------- 295
Query: 263 KLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIV 301
L ++D+SHN L + F R+EN YL IV
Sbjct: 296 TLKVLDLSHNHL---LHVERNQPQFDRLENLYLDHNSIV 331
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 52/129 (40%)
Query: 73 LSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTEL 132
LS + + L L L+NN + +LT+L LYL N R T+L
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133
Query: 133 MVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSG 192
L ++ N+L + LQ LS+S N L+ F+ L LQ + + N
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193
Query: 193 SMISTLNLS 201
S L LS
Sbjct: 194 SRCEILYLS 202
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 7/150 (4%)
Query: 41 SKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFP 100
S +S IP+ K LD+ S A LS + L WL+L N
Sbjct: 25 SLDSVPSGIPADTEK------LDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAG 77
Query: 101 NYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILS 160
+ +LT L L L NN + T+L L + N+L + L+ L
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 161 MSKNLLEGNIPVQFNNLASLQILNISENNL 190
++ N L+ F+ L +LQ L++S N L
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 156 LQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLN-LSSVEHLYLQNNALG 214
L+IL +SKNL+ FN L SL L + +N L+ LS + L+L+NN +
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI- 119
Query: 215 GSIPN-TFFRGSALETLDL 232
SIP+ F R +L LDL
Sbjct: 120 ESIPSYAFNRVPSLRRLDL 138
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L+LS N L P L ++ L L H ++ +F +LK +E L+LSHN L
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLP 242
Query: 419 PPQLTELHSLSTFDVSYN 436
T LH L +++N
Sbjct: 243 HDLFTPLHRLERVHLNHN 260
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 148/335 (44%), Gaps = 61/335 (18%)
Query: 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPS 148
L NNN + I P NLT L L L+NN + D L T L L++S+N +S S
Sbjct: 91 LMNNNQIADITP-LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--S 145
Query: 149 WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLY 207
+ ++LQ L+ S N + P+ NL +L+ L+IS N +S IS L L+++E L
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKPLA--NLTTLERLDISSNKVSD--ISVLAKLTNLESLI 201
Query: 208 LQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIM 267
NN + P + +NL L L GN L+ L L L +
Sbjct: 202 ATNNQISDITP---------------LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL 244
Query: 268 DISHNRLNGSIP-ACITNML-----FSRVEN-GYLYGFDIVLRMYL------DDAYVSNY 314
D+++N+++ P + +T + +++ N L G + + L D + +SN
Sbjct: 245 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 304
Query: 315 YNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEI 374
N T L N + + V+ +TK + L NN+++ D+ S +
Sbjct: 305 KNLTYLTLYFNN----ISDISPVSSLTK-------------LQRLFFYNNKVS-DV-SSL 345
Query: 375 GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 409
+L NI+ L+ HN +S P +NL I L L
Sbjct: 346 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG-Q 417
L+LS+N ++ DI S + L ++ LN S N ++ P +NL +E LD+S NK++
Sbjct: 134 LELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS 189
Query: 418 IPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGN 459
+ +LT L SL ++ NN I + DE S GN
Sbjct: 190 VLAKLTNLESL----IATNNQISDITPLGILTNLDELSLNGN 227
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191
L VLD+S NRL+ + LQ L + N L+ P L+ L+++ NNL+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 192 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 222
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 106 TRLWALYLYNNNFSGKIKDGLL-RSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164
T LYLY+N + K++ G+ R T+L LD+ NN+L+ + L LS++ N
Sbjct: 38 TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 96
Query: 165 LLEGNIPVQFNNLASL 180
L+ F+NL SL
Sbjct: 97 QLKSIPRGAFDNLKSL 112
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191
L VLD+S NRL+ + LQ L + N L+ P L+ L+++ NNL+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 192 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 222
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191
L VLD+S NRL+ + LQ L + N L+ P L+ L+++ NNL+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 192 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 222
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191
L VLD+S NRL+ + LQ L + N L+ P L+ L+++ NNL+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 192 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 222
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 16/147 (10%)
Query: 303 RMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLD-- 360
+ + DA N NS +++ + +D + ++ + ++ RY + G+ L ++ L
Sbjct: 28 KKSVTDAVTQNELNSIDQIIANNSD---IKSVQGIQYLPNVRYLALGGNKLHDISALKEL 84
Query: 361 -------LSNNELTGDIPSEIGD-LQNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLSH 411
L+ N+L +P+ + D L N+ L L N L S+P+ F L + L+L+H
Sbjct: 85 TNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAH 142
Query: 412 NKLNGQIPPQLTELHSLSTFDVSYNNL 438
N+L +L +L+ D+SYN L
Sbjct: 143 NQLQSLPKGVFDKLTNLTELDLSYNQL 169
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 16/115 (13%)
Query: 339 FMTKNRYESYKGDILELMAGLD---LSNNELTGDIPSEIGD-LQNIHGLNLSHNFLSGSI 394
+T N+ +S + + + L L N+L +P + D L N+ LNL+HN L S+
Sbjct: 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQ-SL 148
Query: 395 PES-FSNLKMIESLDLSHNKLNGQIPP----QLTELHSLSTFDVSYNNLSGPIPD 444
P+ F L + LDLS+N+L +P +LT+L L Y N +PD
Sbjct: 149 PKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRL----YQNQLKSVPD 198
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191
L VLD+S NRL+ + LQ L + N L+ P L+ L+++ NNL+
Sbjct: 103 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
Query: 192 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 222
LN L +++ L LQ N+L +IP FF
Sbjct: 163 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 193
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 106/243 (43%), Gaps = 26/243 (10%)
Query: 15 ISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELS 74
+ RN S LP+ + PKL +++S N+ E + L+ L +SSN +
Sbjct: 130 LERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD 187
Query: 75 QSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMV 134
SL+ + F ++S N P + + L A + N G + + EL +
Sbjct: 188 LSLIPSLF---HANVSYNLLSTLAIP--IAVEELDASHNSINVVRGPV------NVELTI 236
Query: 135 LDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN-----N 189
L + +N L+ +W+ N+ L + +S N LE + F + L+ L IS N N
Sbjct: 237 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294
Query: 190 LSGSMISTLNLSSVEHLYL----QNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLL 245
L G I TL + + H +L +N + N + +++ T L+++ H L+ L L
Sbjct: 295 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT--LKLSTHHTLKNLTL 352
Query: 246 RGN 248
N
Sbjct: 353 SHN 355
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 88/219 (40%), Gaps = 43/219 (19%)
Query: 102 YMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLS----GHIPSWMGNFSTLQ 157
+ N +L L + NNN D +T L L +S+NRL+ IPS +
Sbjct: 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 202
Query: 158 ILSM---------------SKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSS 202
+LS S N++ G + V+ L IL + NNL+ + LN
Sbjct: 203 LLSTLAIPIAVEELDASHNSINVVRGPVNVE------LTILKLQHNNLTDTAW-LLNYPG 255
Query: 203 VEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLR 262
+ + L N L + + F + LE L + SN R + L N PIP
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYI-----SNNRLVAL--NLYGQPIP------- 301
Query: 263 KLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIV 301
L ++D+SHN L + F R+EN YL IV
Sbjct: 302 TLKVLDLSHNHL---LHVERNQPQFDRLENLYLDHNSIV 337
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191
L VLD+S NRL+ + LQ L + N L+ P L+ L+++ N+L+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
Query: 192 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 222
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN 189
TE +LD+ NR+ +F L+ L +++N++ P FNNL +L+ L + N
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 190 LS 191
L
Sbjct: 92 LK 93
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 361 LSNNELTGDIPSE--IGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L++NEL G I S+ G L ++ L L N L+G P +F I+ L L NK+
Sbjct: 36 LNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94
Query: 419 PPQLTELHSLSTFDVSYNNLSGPIP 443
LH L T ++ N +S +P
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMP 119
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 12/158 (7%)
Query: 86 WLDLSNNNFVGQIFPN--YMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLS 143
+LDL N+ + PN + LT L LYL N + T L L++S N+L
Sbjct: 32 YLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 144 GHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLN-LSS 202
+ L+ L+++ N L+ F+ L L+ L + +N L + L+S
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 203 VEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNL 240
+++++L +N + P + L IN+HS +
Sbjct: 150 LQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGV 180
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191
L VLD+S NRL+ + LQ L + N L+ P L+ L+++ N L+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 192 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 222
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191
L VLD+S NRL+ + LQ L + N L+ P L+ L+++ N L+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 192 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 222
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 58/138 (42%), Gaps = 16/138 (11%)
Query: 83 SLEWLDLSNNNFVGQIFPNYM---NLTRLWALYLYNNNFSGKIKDG--LLRSTELMVLDI 137
SLE+LDLS N V + N L L L N+ K G LL L LDI
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394
Query: 138 SNNRLSGHIPS--WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMI 195
S N S W L + S +++ IP +L++L++S NNL
Sbjct: 395 SRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP------QTLEVLDVSNNNLDS--- 445
Query: 196 STLNLSSVEHLYLQNNAL 213
+L L ++ LY+ N L
Sbjct: 446 FSLFLPRLQELYISRNKL 463
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 135 LDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG-NIPVQFNNLASLQILNI 185
LD+S+N LS SW G S+L+ L++ N + + F NL +LQ L I
Sbjct: 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 106 TRLWALYLYNNNFSGKIKDGLL-RSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164
T LYLY+N + K++ G+ R T+L LD+ NN+L+ + L LS++ N
Sbjct: 30 TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88
Query: 165 LLEGNIPVQFNNLASL 180
L+ F+NL SL
Sbjct: 89 QLKSIPRGAFDNLKSL 104
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 58/138 (42%), Gaps = 16/138 (11%)
Query: 83 SLEWLDLSNNNFVGQIFPNYM---NLTRLWALYLYNNNFSGKIKDG--LLRSTELMVLDI 137
SLE+LDLS N V + N L L L N+ K G LL L LDI
Sbjct: 361 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 420
Query: 138 SNNRLSGHIPS--WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMI 195
S N S W L + S +++ IP +L++L++S NNL
Sbjct: 421 SRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP------QTLEVLDVSNNNLDS--- 471
Query: 196 STLNLSSVEHLYLQNNAL 213
+L L ++ LY+ N L
Sbjct: 472 FSLFLPRLQELYISRNKL 489
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 135 LDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG-NIPVQFNNLASLQILNI 185
LD+S+N LS SW G S+L+ L++ N + + F NL +LQ L I
Sbjct: 105 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 156
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
LDL NN+++ + LQ+++ L L +N +S ++FS L+ ++ L +S N L +I
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEI 117
Query: 419 PPQL 422
PP L
Sbjct: 118 PPNL 121
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 62/149 (41%), Gaps = 27/149 (18%)
Query: 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRL---S 143
LDL NN+ ++ L L+AL L NN S + +L L IS N L
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 144 GHIPSWM---------------GNFSTLQ---ILSMSKNLLE--GNIPVQFNNLASLQIL 183
++PS + G FS L+ + M N LE G P F+ L L L
Sbjct: 119 PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177
Query: 184 NISENNLSG---SMISTLNLSSVEHLYLQ 209
ISE L+G + TLN ++H +Q
Sbjct: 178 RISEAKLTGIPKDLPETLNELHLDHNKIQ 206
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 25/209 (11%)
Query: 253 PIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVS 312
P+ L +KLG ++ +N+L G +PA + + + + Y +I V
Sbjct: 321 PVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380
Query: 313 N--YYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKG---DILEL-------MAGLD 360
N + ++ ++ + + D + + A++F + N S G D L+ ++ ++
Sbjct: 381 NLSFAHNKLKYIPNIFDAKSVSVXSAIDF-SYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439
Query: 361 LSNNELTGDIPSEIGDLQN-IHGLNLSHNFLSGSIP--------ESFSNLKMIESLDLSH 411
LSNN+++ P E+ + + +NL N L+ IP E+F N ++ S+DL
Sbjct: 440 LSNNQIS-KFPKELFSTGSPLSSINLXGNXLT-EIPKNSLKDENENFKNTYLLTSIDLRF 497
Query: 412 NKLNGQIPP-QLTELHSLSTFDVSYNNLS 439
NKL + T L L D+SYN+ S
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFS 526
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191
L VLD+S NRL+ + LQ L + N L+ P L+ L+++ N L+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 192 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 222
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 400 NLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSG-PIPDKEQFSTFDESSYRG 458
L ++ +LDLSHN+L +P L +L+ DVS+N L+ P+ E +G
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 459 NLFLCGPAINKGCTNLPELLEPSSK 483
N P P LL P+ K
Sbjct: 134 NELKTLP---------PGLLTPTPK 149
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191
L VLD+S NRL+ + LQ L + N L+ P L+ L+++ N L+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 192 GSMISTLN-LSSVEHLYLQNNALGGSIPNTFF 222
LN L +++ L LQ N+L +IP FF
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL-YTIPKGFF 192
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 400 NLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSG-PIPDKEQFSTFDESSYRG 458
L ++ +LDLSHN+L +P L +L+ DVS+N L+ P+ E +G
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 459 NLFLCGPAINKGCTNLPELLEPSSK 483
N P P LL P+ K
Sbjct: 134 NELKTLP---------PGLLTPTPK 149
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 145/335 (43%), Gaps = 62/335 (18%)
Query: 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPS 148
L NNN + I P NLT L L L+NN + D L T L L++S+N +S S
Sbjct: 95 LMNNNQIADITP-LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--S 149
Query: 149 WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLY 207
+ ++LQ LS + + NL +L+ L+IS N +S IS L L+++E L
Sbjct: 150 ALSGLTSLQQLSFGNQVTDLK---PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 204
Query: 208 LQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIM 267
NN + P +NL L L GN L+ L L L +
Sbjct: 205 ATNNQISDITPLGIL---------------TNLDELSLNGNQLKDI--GTLASLTNLTDL 247
Query: 268 DISHNRLNGSIP-ACITNML-----FSRVEN-GYLYGFDIVLRMYL------DDAYVSNY 314
D+++N+++ P + +T + +++ N L G + + L D + +SN
Sbjct: 248 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 307
Query: 315 YNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEI 374
N T L N + + V+ +TK + L +NN+++ D+ S +
Sbjct: 308 KNLTYLTLYFNN----ISDISPVSSLTK-------------LQRLFFANNKVS-DV-SSL 348
Query: 375 GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 409
+L NI+ L+ HN +S P +NL I L L
Sbjct: 349 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 381
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.3 bits (72), Expect = 0.73, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN 189
T+ L ++NN+++ P + LQ L + N L F+ L L L++++N+
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 190 LSGSMISTL-NLSSVEHLYLQNN 211
L NL S+ H+YL NN
Sbjct: 93 LKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 112/264 (42%), Gaps = 22/264 (8%)
Query: 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSN 91
L KLV ++ NSF+ + LR L + N +L + +L+ LDLS+
Sbjct: 302 LKKLV---LNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSH 358
Query: 92 NNFVGQIFPNYM--NLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIP-S 148
++ N NL L L L N G +L +LD++ L P S
Sbjct: 359 SDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
Query: 149 WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNL----SSVE 204
N L++L++S LL+ + L L+ LN+ N+ IS NL S+E
Sbjct: 419 PFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLE 478
Query: 205 HLYLQNNALGGSIPNTFFRG-SALETLDLR--------INEHSNLRTLLLR--GNYLQGP 253
L L + L SI F G + LDL ++ S+L+ L L N ++
Sbjct: 479 ILILSSCNLL-SIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIRII 537
Query: 254 IPHQLCHLRKLGIMDISHNRLNGS 277
PH L L + I+++SHN L+ +
Sbjct: 538 PPHLLPALSQQSIINLSHNPLDCT 561
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 379 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNL 438
++ L+L+H L+ + L ++ LDLSHN+L +PP L L L S N L
Sbjct: 442 DVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL 498
Query: 439 S 439
Sbjct: 499 E 499
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 379 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNL 438
++ L+L+H L+ + L ++ LDLSHN+L +PP L L L S N L
Sbjct: 442 DVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL 498
Query: 439 S 439
Sbjct: 499 E 499
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 146/335 (43%), Gaps = 62/335 (18%)
Query: 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPS 148
L NNN + I P NLT L L L+NN + D L T L L++S+N +S S
Sbjct: 91 LMNNNQIADITP-LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--S 145
Query: 149 WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLY 207
+ ++LQ L+ + + NL +L+ L+IS N +S IS L L+++E L
Sbjct: 146 ALSGLTSLQQLNFGNQVTDLK---PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 200
Query: 208 LQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIM 267
NN + P + +NL L L GN L+ L L L +
Sbjct: 201 ATNNQISDITP---------------LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL 243
Query: 268 DISHNRLNGSIP-ACITNML-----FSRVEN-GYLYGFDIVLRMYL------DDAYVSNY 314
D+++N+++ P + +T + +++ N L G + + L D + +SN
Sbjct: 244 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 303
Query: 315 YNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEI 374
N T L N + + V+ +TK + L SNN+++ D+ S +
Sbjct: 304 KNLTYLTLYFNN----ISDISPVSSLTK-------------LQRLFFSNNKVS-DV-SSL 344
Query: 375 GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 409
+L NI+ L+ HN +S P +NL I L L
Sbjct: 345 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 111 LYLYNNNFSGKIKDGLL-RSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169
LYLY+N + K++ G+ R T+L LD+ NN+L+ + L LS++ N L+
Sbjct: 35 LYLYDNRIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 170 IPVQFNNLASL 180
F+NL SL
Sbjct: 94 PRGAFDNLRSL 104
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN 189
T L L I NN+++ P + N S L L + N + V+ +L L+ LN+ N
Sbjct: 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVK--DLTKLKXLNVGSNQ 276
Query: 190 LSGSMISTLN-LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTL 243
+S IS LN LS + L+L NN LG + L TL L N +++R L
Sbjct: 277 ISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPL 329
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%)
Query: 102 YMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSM 161
+ LT L LYLY+N K + T L LD+ NN+L + L+ LS+
Sbjct: 129 FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSL 188
Query: 162 SKNLLEGNIPVQFNNLASL 180
+ N L+ F+ L SL
Sbjct: 189 NDNQLKSVPDGVFDRLTSL 207
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 111 LYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNL-LEGN 169
++L+ N S L +L + +N L+ + + L+ L +S N L
Sbjct: 36 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 95
Query: 170 IPVQFNNLASLQILNISENNLSGSMISTLN-LSSVEHLYLQNNALGGSIPNTFFR 223
P F+ L L L++ L L+++++LYLQ+NAL ++P+ FR
Sbjct: 96 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFR 149
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 111 LYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNL-LEGN 169
++L+ N S L +L + +N L+ + + L+ L +S N L
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 170 IPVQFNNLASLQILNISENNLSGSMISTLN-LSSVEHLYLQNNALGGSIPNTFFR 223
P F+ L L L++ L L+++++LYLQ+NAL ++P+ FR
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFR 150
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 102 YMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSM 161
+ LT L L LYNN + + TEL L + NN+L +P G F +L+ L M
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPE--GAFDSLEKLKM 209
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 12/183 (6%)
Query: 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGK-MQGLRLLDVSSNNF 69
LD+ N S LP L KL + ++ N + +P+ I K ++ L L V+ N
Sbjct: 40 KKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97
Query: 70 AGELSQSLVINCFS----LEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDG 125
Q+L I F L L L N + +LT+L L L N K
Sbjct: 98 -----QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152
Query: 126 LLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNI 185
+ T L L + NN+L + L+ L + N L+ F++L L++L +
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Query: 186 SEN 188
EN
Sbjct: 213 QEN 215
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 135 LDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSM 194
LD+ +N+LS + L++L ++ N L+ F L +L+ L +++N L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 195 ISTLN-LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNL 240
I + L ++ L L N L P F + L L L NE +L
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 145/335 (43%), Gaps = 62/335 (18%)
Query: 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPS 148
L NNN + I P NLT L L L+NN + D L T L L++S+N +S S
Sbjct: 96 LMNNNQIADITP-LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--S 150
Query: 149 WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLY 207
+ ++LQ LS + + NL +L+ L+IS N +S IS L L+++E L
Sbjct: 151 ALSGLTSLQQLSFGNQVTDLK---PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 205
Query: 208 LQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIM 267
NN + P + +NL L L GN L+ L L L +
Sbjct: 206 ATNNQISDITP---------------LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL 248
Query: 268 DISHNRLNGSIP-ACITNML-----FSRVEN-GYLYGFDIVLRMYL------DDAYVSNY 314
D+++N+++ P + +T + +++ N L G + + L D + +SN
Sbjct: 249 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 308
Query: 315 YNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEI 374
N T L N + + V+ +TK + L NN+++ D+ S +
Sbjct: 309 KNLTYLTLYFNN----ISDISPVSSLTK-------------LQRLFFYNNKVS-DV-SSL 349
Query: 375 GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 409
+L NI+ L+ HN +S P +NL I L L
Sbjct: 350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 13/167 (7%)
Query: 111 LYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNL-LEGN 169
++L+ N S L +L + +N L+G + + L+ L +S N L
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 170 IPVQFNNLASLQILNISENNLSGSMISTLN-LSSVEHLYLQNNALGGSIPNTFFRGSALE 228
P F L L L++ L L+++++LYLQ+N L NTF L
Sbjct: 96 DPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLT 155
Query: 229 TLDLR------INEHS-----NLRTLLLRGNYLQGPIPHQLCHLRKL 264
L L + EH+ +L LLL N++ PH L +L
Sbjct: 156 HLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRL 202
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 154 STLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLN-LSSVEHLYLQNNA 212
+T Q+L + N + P F++L L LN++ N L+ + + L+ + HL L N
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQ 99
Query: 213 LGGSIPNTFF 222
L SIP F
Sbjct: 100 L-KSIPMGVF 108
Score = 28.5 bits (62), Expect = 9.9, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISEN 188
T VL + N+++ P + + L L+++ N L +PV F+ L L L + N
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA-LPVGVFDKLTKLTHLALHIN 98
Query: 189 NLSGSMISTL-NLSSVEHLYLQNN 211
L + NL S+ H+YL NN
Sbjct: 99 QLKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 31/125 (24%)
Query: 135 LDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN----L 190
LD+S N LS + + F+ L++L++S N+L + ++ +L++L+ L+++ N L
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQELL 96
Query: 191 SGSMISTL-----NLSSV--------EHLYLQNNALGGSIPNTFFRG------SALETLD 231
G I TL N+S V +++YL NN + T R S ++ LD
Sbjct: 97 VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKI------TMLRDLDEGCRSRVQYLD 150
Query: 232 LRINE 236
L++NE
Sbjct: 151 LKLNE 155
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 109/259 (42%), Gaps = 27/259 (10%)
Query: 195 ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYL---Q 251
+S ++L+ V YL++ +P F+ +L + ++ + L L+ L +
Sbjct: 287 VSAMSLAGVSIKYLED------VPK-HFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNK 339
Query: 252 GPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLR-------- 303
G I + L L +D+S N L S C + +S + L D+
Sbjct: 340 GSISFKKVALPSLSYLDLSRNAL--SFSGCCS---YSDLGTNSLRHLDLSFNGAIIMSAN 394
Query: 304 -MYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMA--GLD 360
M L++ ++ +ST++ + + + L L+ ++ N + G L L + L
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454
Query: 361 LSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 419
++ N + S + + N+ L+LS L F L ++ L++SHN L
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514
Query: 420 PQLTELHSLSTFDVSYNNL 438
+L+SLST D S+N +
Sbjct: 515 SHYNQLYSLSTLDCSFNRI 533
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 109/259 (42%), Gaps = 27/259 (10%)
Query: 195 ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYL---Q 251
+S ++L+ V YL++ +P F+ +L + ++ + L L+ L +
Sbjct: 282 VSAMSLAGVSIKYLED------VPK-HFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNK 334
Query: 252 GPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLR-------- 303
G I + L L +D+S N L S C + +S + L D+
Sbjct: 335 GSISFKKVALPSLSYLDLSRNAL--SFSGCCS---YSDLGTNSLRHLDLSFNGAIIMSAN 389
Query: 304 -MYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMA--GLD 360
M L++ ++ +ST++ + + + L L+ ++ N + G L L + L
Sbjct: 390 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 449
Query: 361 LSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 419
++ N + S + + N+ L+LS L F L ++ L++SHN L
Sbjct: 450 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 509
Query: 420 PQLTELHSLSTFDVSYNNL 438
+L+SLST D S+N +
Sbjct: 510 SHYNQLYSLSTLDCSFNRI 528
>pdb|1AEI|A Chain A, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|B Chain B, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|C Chain C, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|D Chain D, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|E Chain E, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|F Chain F, Crystal Structure Of The Annexin Xii Hexamer
Length = 315
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 97 QIFPNYMNLTRLWALYLYNNNFSGKIKDGLL 127
QIF Y ++ L N FSG IK+GLL
Sbjct: 205 QIFHEYSKISNKTILQAIENEFSGDIKNGLL 235
>pdb|1DM5|A Chain A, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|B Chain B, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|C Chain C, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|D Chain D, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|E Chain E, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|F Chain F, Annexin Xii E105k Homohexamer Crystal Structure
Length = 315
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 97 QIFPNYMNLTRLWALYLYNNNFSGKIKDGLL 127
QIF Y ++ L N FSG IK+GLL
Sbjct: 205 QIFHEYSKISNKTILQAIENEFSGDIKNGLL 235
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 381 HGLNLSHNFLSGSIPESFSNL---KMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNN 437
H L+LSHN L ++ S + SL+LS L Q+P L L D+S N
Sbjct: 227 HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPA--KLRVLDLSSNR 283
Query: 438 LS-GPIPDKEQFSTFDESSYRGNLFL 462
L+ P PD + D + GN FL
Sbjct: 284 LNRAPQPD--ELPEVDNLTLDGNPFL 307
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 144/335 (42%), Gaps = 62/335 (18%)
Query: 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPS 148
L NNN + I P NLT L L L+NN + D L T L L++S+N +S S
Sbjct: 91 LMNNNQIADITP-LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--S 145
Query: 149 WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLY 207
+ ++LQ L+ + + NL +L+ L+IS N +S IS L L+++E L
Sbjct: 146 ALSGLTSLQQLNFGNQVTDLK---PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 200
Query: 208 LQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIM 267
NN + P +NL L L GN L+ L L L +
Sbjct: 201 ATNNQISDITPLGIL---------------TNLDELSLNGNQLKDI--GTLASLTNLTDL 243
Query: 268 DISHNRLNGSIP-ACITNML-----FSRVEN-GYLYGFDIVLRMYL------DDAYVSNY 314
D+++N+++ P + +T + +++ N L G + + L D + +SN
Sbjct: 244 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 303
Query: 315 YNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEI 374
N T L N + + V+ +TK + L NN+++ D+ S +
Sbjct: 304 KNLTYLTLYFNN----ISDISPVSSLTK-------------LQRLFFYNNKVS-DV-SSL 344
Query: 375 GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 409
+L NI+ L+ HN +S P +NL I L L
Sbjct: 345 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 365 ELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 424
++ D+P+ NI LNL+HN L +F+ + SLD+ N ++ P +
Sbjct: 18 QVPDDLPT------NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 71
Query: 425 LHSLSTFDVSYNNLS 439
L L ++ +N LS
Sbjct: 72 LPMLKVLNLQHNELS 86
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 365 ELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 424
++ D+P+ NI LNL+HN L +F+ + SLD+ N ++ P +
Sbjct: 23 QVPDDLPT------NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 76
Query: 425 LHSLSTFDVSYNNLS 439
L L ++ +N LS
Sbjct: 77 LPMLKVLNLQHNELS 91
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 365 ELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 424
++ D+P+ NI LNL+HN L +F+ + SLD+ N ++ P +
Sbjct: 28 QVPDDLPT------NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 81
Query: 425 LHSLSTFDVSYNNLS 439
L L ++ +N LS
Sbjct: 82 LPMLKVLNLQHNELS 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,647,813
Number of Sequences: 62578
Number of extensions: 713068
Number of successful extensions: 2267
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1449
Number of HSP's gapped (non-prelim): 463
length of query: 558
length of database: 14,973,337
effective HSP length: 104
effective length of query: 454
effective length of database: 8,465,225
effective search space: 3843212150
effective search space used: 3843212150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)