Query 037792
Match_columns 558
No_of_seqs 411 out of 4383
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 04:25:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.8E-47 3.9E-52 432.4 36.5 449 5-466 115-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.4E-46 1.2E-50 420.4 35.0 459 4-466 89-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.9E-42 1.3E-46 331.5 9.0 403 4-480 47-486 (873)
4 KOG4194 Membrane glycoprotein 100.0 8.4E-40 1.8E-44 316.6 5.6 370 10-451 80-464 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.5E-36 3.2E-41 282.0 -9.3 397 5-462 65-541 (565)
6 KOG0444 Cytoskeletal regulator 100.0 1.8E-33 4E-38 274.7 -0.9 356 6-439 5-375 (1255)
7 KOG0444 Cytoskeletal regulator 100.0 1.4E-33 3E-38 275.5 -1.8 359 32-466 6-379 (1255)
8 KOG0472 Leucine-rich repeat pr 100.0 6.6E-34 1.4E-38 264.4 -7.7 349 9-439 115-541 (565)
9 KOG0618 Serine/threonine phosp 99.9 1.9E-29 4E-34 257.6 1.8 412 7-461 44-488 (1081)
10 KOG0618 Serine/threonine phosp 99.9 2.9E-28 6.2E-33 249.0 0.0 351 5-438 65-488 (1081)
11 KOG4237 Extracellular matrix p 99.9 1E-27 2.3E-32 223.0 -3.5 387 9-436 68-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 6E-24 1.3E-28 241.2 24.6 297 59-438 591-905 (1153)
13 PLN03210 Resistant to P. syrin 99.9 5.5E-23 1.2E-27 233.5 24.7 331 48-458 549-902 (1153)
14 KOG4237 Extracellular matrix p 99.9 4E-25 8.6E-30 205.9 -1.3 332 61-464 50-383 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 7.1E-21 1.5E-25 201.2 17.2 40 380-420 424-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 1.4E-20 3E-25 198.9 18.2 268 8-401 201-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2.5E-19 5.5E-24 190.7 12.2 202 9-275 179-380 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 4.8E-19 1E-23 188.6 14.0 247 57-415 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 4E-19 8.8E-24 175.8 5.8 86 353-438 220-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.5E-18 3.3E-23 171.7 7.8 257 12-277 2-293 (319)
21 KOG0617 Ras suppressor protein 99.7 1.6E-18 3.4E-23 143.9 -5.6 161 32-198 32-193 (264)
22 KOG0617 Ras suppressor protein 99.6 2.3E-18 4.9E-23 143.0 -4.9 164 6-177 31-195 (264)
23 PLN03150 hypothetical protein; 99.5 1.7E-14 3.7E-19 153.4 10.2 118 355-472 419-538 (623)
24 PLN03150 hypothetical protein; 99.3 2.3E-11 5E-16 129.6 11.2 92 353-444 441-533 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 4.4E-13 9.5E-18 131.7 -3.8 191 10-211 77-270 (722)
26 PF14580 LRR_9: Leucine-rich r 99.2 1.7E-11 3.7E-16 107.0 6.5 108 7-119 18-126 (175)
27 KOG3207 Beta-tubulin folding c 99.2 1.9E-12 4.1E-17 123.5 0.3 183 32-214 120-314 (505)
28 KOG1909 Ran GTPase-activating 99.2 1.2E-11 2.5E-16 115.1 3.3 236 32-275 29-311 (382)
29 COG4886 Leucine-rich repeat (L 99.2 5.6E-11 1.2E-15 121.1 8.4 172 37-215 97-269 (394)
30 KOG0532 Leucine-rich repeat (L 99.1 2.1E-12 4.7E-17 127.0 -4.2 171 56-235 74-244 (722)
31 KOG1909 Ran GTPase-activating 99.1 1E-11 2.2E-16 115.5 0.1 238 4-251 26-311 (382)
32 COG4886 Leucine-rich repeat (L 99.1 8.3E-11 1.8E-15 119.8 6.0 200 12-221 97-297 (394)
33 KOG3207 Beta-tubulin folding c 99.1 4.1E-11 8.8E-16 114.6 2.2 211 5-216 118-341 (505)
34 PF14580 LRR_9: Leucine-rich r 99.1 1.3E-10 2.9E-15 101.5 5.2 85 81-167 41-126 (175)
35 KOG1259 Nischarin, modulator o 99.1 3.9E-11 8.6E-16 109.1 1.5 130 238-441 284-414 (490)
36 KOG1259 Nischarin, modulator o 99.0 3.6E-11 7.8E-16 109.4 0.4 128 82-215 284-413 (490)
37 KOG4658 Apoptotic ATPase [Sign 99.0 6.2E-10 1.3E-14 121.3 9.4 130 5-137 542-675 (889)
38 PF13855 LRR_8: Leucine rich r 99.0 2.1E-10 4.5E-15 82.4 3.0 61 378-438 1-61 (61)
39 KOG4658 Apoptotic ATPase [Sign 99.0 6.5E-10 1.4E-14 121.2 7.7 150 33-186 523-676 (889)
40 PF13855 LRR_8: Leucine rich r 98.9 6.6E-10 1.4E-14 79.7 3.0 61 354-414 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.8 6.1E-10 1.3E-14 113.7 -1.5 234 32-277 71-320 (414)
42 KOG0531 Protein phosphatase 1, 98.7 1.9E-09 4.2E-14 110.0 -0.7 197 6-214 70-268 (414)
43 KOG1859 Leucine-rich repeat pr 98.7 5.2E-10 1.1E-14 113.3 -6.4 108 353-465 186-295 (1096)
44 KOG1859 Leucine-rich repeat pr 98.5 9.7E-09 2.1E-13 104.4 -3.8 126 83-214 165-292 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.4 2.3E-08 5.1E-13 91.3 -1.2 175 83-272 186-373 (419)
46 KOG2120 SCF ubiquitin ligase, 98.4 2.9E-08 6.4E-13 90.7 -2.1 178 33-213 185-375 (419)
47 KOG2982 Uncharacterized conser 98.4 1.9E-07 4.1E-12 85.4 2.9 205 9-215 46-263 (418)
48 COG5238 RNA1 Ran GTPase-activa 98.3 7.7E-07 1.7E-11 80.5 3.9 237 32-275 29-316 (388)
49 KOG2982 Uncharacterized conser 98.2 3E-07 6.5E-12 84.2 1.2 39 105-143 70-110 (418)
50 KOG4579 Leucine-rich repeat (L 98.2 2E-07 4.2E-12 75.5 -1.5 83 354-439 53-136 (177)
51 KOG1644 U2-associated snRNP A' 98.0 9E-06 2E-10 70.6 5.3 105 58-165 43-151 (233)
52 KOG4579 Leucine-rich repeat (L 98.0 1.3E-06 2.9E-11 70.8 0.2 134 8-147 27-163 (177)
53 COG5238 RNA1 Ran GTPase-activa 98.0 3.1E-06 6.7E-11 76.7 2.5 183 32-214 91-316 (388)
54 PF12799 LRR_4: Leucine Rich r 98.0 6.8E-06 1.5E-10 53.8 3.3 36 379-415 2-37 (44)
55 PF13306 LRR_5: Leucine rich r 98.0 1.2E-05 2.7E-10 67.5 5.4 126 24-156 3-128 (129)
56 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.5E-10 52.0 3.9 36 34-70 2-37 (44)
57 PF13306 LRR_5: Leucine rich r 97.9 2.4E-05 5.1E-10 65.8 5.7 123 3-133 7-129 (129)
58 KOG3665 ZYG-1-like serine/thre 97.9 7.8E-06 1.7E-10 87.4 2.9 152 33-186 122-283 (699)
59 KOG1644 U2-associated snRNP A' 97.8 3.9E-05 8.5E-10 66.8 5.5 107 81-189 41-151 (233)
60 PRK15386 type III secretion pr 97.7 0.00014 3E-09 71.9 9.3 31 155-188 157-187 (426)
61 KOG3665 ZYG-1-like serine/thre 97.7 3.6E-05 7.8E-10 82.5 5.0 149 57-207 122-281 (699)
62 KOG4341 F-box protein containi 97.6 9.6E-06 2.1E-10 78.1 -1.7 264 9-274 139-438 (483)
63 PRK15386 type III secretion pr 97.5 0.00037 8E-09 69.0 8.2 34 353-389 155-188 (426)
64 KOG4341 F-box protein containi 97.5 1.4E-05 2.9E-10 77.1 -1.8 87 353-439 345-439 (483)
65 KOG1947 Leucine rich repeat pr 97.4 4.4E-05 9.6E-10 80.1 -0.0 76 199-274 360-439 (482)
66 KOG2123 Uncharacterized conser 97.1 4.5E-05 9.7E-10 69.6 -2.5 98 34-136 20-123 (388)
67 KOG1947 Leucine rich repeat pr 97.0 0.00025 5.4E-09 74.4 1.0 135 5-139 185-330 (482)
68 KOG2123 Uncharacterized conser 96.9 7.1E-05 1.5E-09 68.4 -3.1 100 7-112 18-123 (388)
69 KOG2739 Leucine-rich acidic nu 96.9 0.00052 1.1E-08 62.6 1.9 108 31-141 41-154 (260)
70 KOG2739 Leucine-rich acidic nu 96.6 0.00093 2E-08 60.9 1.5 86 102-189 61-154 (260)
71 KOG4308 LRR-containing protein 95.6 0.00019 4.1E-09 73.7 -9.1 13 355-367 433-445 (478)
72 PF00560 LRR_1: Leucine Rich R 95.3 0.0072 1.6E-07 32.8 0.8 12 380-391 2-13 (22)
73 PF00560 LRR_1: Leucine Rich R 94.8 0.013 2.8E-07 31.7 0.8 21 403-424 1-21 (22)
74 PF13504 LRR_7: Leucine rich r 93.0 0.064 1.4E-06 26.9 1.3 13 9-21 2-14 (17)
75 KOG0473 Leucine-rich repeat pr 92.9 0.0051 1.1E-07 55.1 -4.7 84 353-439 41-124 (326)
76 smart00370 LRR Leucine-rich re 92.3 0.14 3E-06 28.9 2.3 23 7-30 1-23 (26)
77 smart00369 LRR_TYP Leucine-ric 92.3 0.14 3E-06 28.9 2.3 23 7-30 1-23 (26)
78 KOG4308 LRR-containing protein 91.8 0.0053 1.1E-07 63.2 -6.9 185 10-215 89-304 (478)
79 smart00370 LRR Leucine-rich re 91.5 0.15 3.3E-06 28.8 1.9 16 402-417 2-17 (26)
80 smart00369 LRR_TYP Leucine-ric 91.5 0.15 3.3E-06 28.8 1.9 16 402-417 2-17 (26)
81 KOG3864 Uncharacterized conser 90.1 0.079 1.7E-06 46.7 -0.3 84 179-273 102-187 (221)
82 PF13516 LRR_6: Leucine Rich r 89.8 0.11 2.3E-06 28.7 0.2 15 378-392 2-16 (24)
83 KOG0473 Leucine-rich repeat pr 88.7 0.019 4.1E-07 51.6 -5.1 88 372-461 36-123 (326)
84 KOG3864 Uncharacterized conser 87.0 0.17 3.6E-06 44.8 -0.3 82 34-115 102-185 (221)
85 TIGR00864 PCC polycystin catio 83.6 0.72 1.6E-05 56.2 2.6 39 408-446 1-39 (2740)
86 KOG4242 Predicted myosin-I-bin 80.9 7.3 0.00016 39.4 7.9 240 33-275 165-453 (553)
87 KOG4242 Predicted myosin-I-bin 79.3 17 0.00036 36.9 9.8 107 82-190 165-280 (553)
88 TIGR00864 PCC polycystin catio 78.8 1.1 2.4E-05 54.7 1.9 33 384-416 1-33 (2740)
89 smart00365 LRR_SD22 Leucine-ri 75.7 2.2 4.8E-05 24.1 1.6 14 402-415 2-15 (26)
90 smart00364 LRR_BAC Leucine-ric 70.7 3.2 7E-05 23.4 1.5 18 8-26 2-19 (26)
91 smart00368 LRR_RI Leucine rich 68.8 3.1 6.8E-05 23.9 1.2 14 378-391 2-15 (28)
92 PTZ00382 Variant-specific surf 57.0 6.5 0.00014 30.6 1.5 20 497-516 68-87 (96)
93 KOG3763 mRNA export factor TAP 52.6 12 0.00026 38.7 2.9 67 29-96 214-284 (585)
94 PF01102 Glycophorin_A: Glycop 50.7 14 0.00031 30.1 2.5 20 498-517 67-86 (122)
95 KOG3763 mRNA export factor TAP 48.2 11 0.00025 38.8 2.0 62 353-415 217-283 (585)
96 PTZ00370 STEVOR; Provisional 41.3 25 0.00055 33.1 2.9 23 500-522 259-281 (296)
97 PF08374 Protocadherin: Protoc 37.7 22 0.00047 31.9 1.8 26 492-517 35-60 (221)
98 smart00367 LRR_CC Leucine-rich 36.8 23 0.00051 19.6 1.3 12 378-389 2-13 (26)
99 PF15102 TMEM154: TMEM154 prot 33.6 23 0.00049 29.8 1.2 16 508-523 72-87 (146)
100 PF08693 SKG6: Transmembrane a 31.8 16 0.00034 23.1 0.0 20 497-516 14-33 (40)
101 TIGR01478 STEVOR variant surfa 31.4 38 0.00082 31.9 2.4 17 501-517 264-280 (295)
102 PF06716 DUF1201: Protein of u 28.9 1.1E+02 0.0024 19.8 3.4 21 496-516 7-27 (54)
103 PF08135 EPV_E5: Major transfo 28.8 75 0.0016 20.0 2.6 31 497-527 7-37 (44)
104 PRK01844 hypothetical protein; 28.3 87 0.0019 22.7 3.2 19 507-525 14-32 (72)
105 PF15050 SCIMP: SCIMP protein 27.5 69 0.0015 25.7 2.9 8 510-517 21-28 (133)
106 PRK00523 hypothetical protein; 27.4 95 0.0021 22.6 3.3 19 507-525 15-33 (72)
107 smart00082 LRRCT Leucine rich 26.4 32 0.0007 22.7 0.8 10 459-468 1-10 (51)
108 PF07204 Orthoreo_P10: Orthore 24.2 73 0.0016 24.4 2.4 29 494-522 41-69 (98)
109 PHA02849 putative transmembran 22.2 1.4E+02 0.0031 21.9 3.4 11 520-530 35-45 (82)
110 PF01299 Lamp: Lysosome-associ 21.3 84 0.0018 30.6 3.0 10 498-507 273-282 (306)
111 PF04418 DUF543: Domain of unk 21.3 1.3E+02 0.0028 22.2 3.2 25 502-526 33-57 (75)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-47 Score=432.45 Aligned_cols=449 Identities=34% Similarity=0.537 Sum_probs=284.0
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
..+++|++|++++|.+++.+|.. .+++|++|++++|.+++..|..++++++|++|++++|.+++.+|..+ .++++|
T Consensus 115 ~~l~~L~~L~Ls~n~l~~~~p~~---~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L 190 (968)
T PLN00113 115 TTSSSLRYLNLSNNNFTGSIPRG---SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSL 190 (968)
T ss_pred ccCCCCCEEECcCCccccccCcc---ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCC
Confidence 36677777777777776666642 25667777777777666666667777777777777776665555544 566667
Q ss_pred CEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccC
Q 037792 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 164 (558)
++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..++++++|+.|++++|
T Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred CeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 77777666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCC-------
Q 037792 165 LLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE------- 236 (558)
Q Consensus 165 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~------- 236 (558)
.+.+..|..+..+++|+.|++++|.+.+..+..+ .+++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 271 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 350 (968)
T PLN00113 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK 350 (968)
T ss_pred eeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh
Confidence 6665566666666666666666666554444333 55556666666555555555555555555555555551
Q ss_pred ----CCCcCEEEccCCcCCCCchhhccC------------------------CCCCCEEEcccCcCccccChhhhcccc-
Q 037792 237 ----HSNLRTLLLRGNYLQGPIPHQLCH------------------------LRKLGIMDISHNRLNGSIPACITNMLF- 287 (558)
Q Consensus 237 ----~~~L~~L~l~~n~l~~~~~~~~~~------------------------l~~L~~L~l~~n~l~~~~p~~~~~l~~- 287 (558)
+++|+.|++++|.+++..|..++. +++|+.|++++|++++..|..+..++.
T Consensus 351 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 430 (968)
T PLN00113 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430 (968)
T ss_pred HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence 234555555555555444444444 444444444444444444444333221
Q ss_pred --cccccCccccccchhhhcccccccCcccchhhhhhccCC------Cccccccceeeeeecccccc-cccc--hhhccc
Q 037792 288 --SRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGN------DGRMLGALVAVNFMTKNRYE-SYKG--DILELM 356 (558)
Q Consensus 288 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~--~~l~~L 356 (558)
..+..+.+.+........+.. +..+.+..+ +............+..+... ..+. ..+++|
T Consensus 431 ~~L~Ls~N~l~~~~~~~~~~l~~---------L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 501 (968)
T PLN00113 431 YFLDISNNNLQGRINSRKWDMPS---------LQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSEL 501 (968)
T ss_pred CEEECcCCcccCccChhhccCCC---------CcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhcc
Confidence 111222222111110000000 000000000 00000001111122222222 1111 127889
Q ss_pred CEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCC
Q 037792 357 AGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYN 436 (558)
Q Consensus 357 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N 436 (558)
+.|++++|.+.+.+|..+..+++|++|+|++|.+++.+|..|.++++|+.|+|++|++++.+|..+..+++|+.|++++|
T Consensus 502 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 502 MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581 (968)
T ss_pred CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCcccCCCCcccccCCCCCCCCC
Q 037792 437 NLSGPIPDKEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 437 ~l~~~~p~~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
++++.+|....+.++....+.|||..|+..
T Consensus 582 ~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 582 HLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999998888889999999999999754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.4e-46 Score=420.42 Aligned_cols=459 Identities=32% Similarity=0.458 Sum_probs=374.0
Q ss_pred CCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCC
Q 037792 4 TSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFS 83 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 83 (558)
+..+++|++|++++|.+.+.+|..++..+++|++|++++|.+++..|. +.+++|++|++++|.+++.+|..+ .++++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~ 165 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSS 165 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCC
Confidence 457899999999999999899999987799999999999999887775 568999999999999987788775 88999
Q ss_pred CCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEccc
Q 037792 84 LEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSK 163 (558)
Q Consensus 84 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 163 (558)
|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|+.|++++|.+.+..|..++++++|++|++++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 99999999999988999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred CcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC-------
Q 037792 164 NLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN------- 235 (558)
Q Consensus 164 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n------- 235 (558)
|.+.+..|..++.+++|+.|++++|.+.+..+..+ .+++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC
Confidence 99998999999999999999999999987665554 8899999999999999999999999999999999988
Q ss_pred ----CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhccc---ccccccCccccccchh------
Q 037792 236 ----EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNML---FSRVENGYLYGFDIVL------ 302 (558)
Q Consensus 236 ----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~---~~~~~~~~~~~~~~~~------ 302 (558)
.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+. ...+..+.+.+..+..
T Consensus 326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 357899999999999999999999999999999999999988888776543 2222333332222111
Q ss_pred --hhcccccccC-cccch------hhhhhccCCCc--------cccccceeeeeecccccc-cccc-hhhcccCEEEccC
Q 037792 303 --RMYLDDAYVS-NYYNS------TVELLLDGNDG--------RMLGALVAVNFMTKNRYE-SYKG-DILELMAGLDLSN 363 (558)
Q Consensus 303 --~~~~~~~~~~-~~~~~------~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~-~~l~~L~~L~Ls~ 363 (558)
...+..+... ..... +..+.+..+.. ...+....+. +..+... .++. ...++|+.|++++
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-L~~n~~~~~~p~~~~~~~L~~L~ls~ 484 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS-LARNKFFGGLPDSFGSKRLENLDLSR 484 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEE-CcCceeeeecCcccccccceEEECcC
Confidence 1111111110 00000 00000000000 0001111111 1111111 1111 0146799999999
Q ss_pred CCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCC
Q 037792 364 NELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIP 443 (558)
Q Consensus 364 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 443 (558)
|++.+..|..+..+++|++|++++|.+++.+|+.+.++++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|
T Consensus 485 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred CccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred C-CcccCCCCcccccCCCCCCCCC
Q 037792 444 D-KEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 444 ~-~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
. ...+..+..+++++|++.+..|
T Consensus 565 ~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 565 KNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hhHhcCcccCEEeccCCcceeeCC
Confidence 7 5667889999999999987554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-42 Score=331.51 Aligned_cols=403 Identities=21% Similarity=0.239 Sum_probs=346.5
Q ss_pred CCcCCCcc-EEEccCCcCCCCC-----ChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHH
Q 037792 4 TSAQHGLH-SLDISRNSFSGKL-----PQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSL 77 (558)
Q Consensus 4 ~~~~~~L~-~L~l~~n~l~~~~-----p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 77 (558)
++.|+... .||++.+.+. .+ +..+ .+.-+.||+++|.+..+.+..|.++++|+.+++..|.++ .+|...
T Consensus 47 pa~c~c~~~lldcs~~~le-a~~~~~l~g~l---p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~ 121 (873)
T KOG4194|consen 47 PATCPCNTRLLDCSDRELE-AIDKSRLKGFL---PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG 121 (873)
T ss_pred CCcCCCCceeeecCccccc-cccccccCCcC---ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc
Confidence 45666554 4799999886 44 3222 246778999999999999999999999999999999999 898744
Q ss_pred HhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCc
Q 037792 78 VINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQ 157 (558)
Q Consensus 78 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 157 (558)
....+|+.|+|.+|.|.....+.++.++.|+.|||+.|.|+.+....|..-.++++|+|++|.|+......|.++.+|.
T Consensus 122 -~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 122 -HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL 200 (873)
T ss_pred -ccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchhe
Confidence 4456799999999999988888999999999999999999987777888888999999999999999999999999999
Q ss_pred EEEcccCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC-
Q 037792 158 ILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN- 235 (558)
Q Consensus 158 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n- 235 (558)
.|.|+.|+++...+..|..+++|+.|+|..|+|.......+ ++++|+.|.+..|.+......+|..+.++++|+++.|
T Consensus 201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred eeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence 99999999998888889999999999999999987755445 8999999999999999888889999999999999999
Q ss_pred ----------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhc
Q 037792 236 ----------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMY 305 (558)
Q Consensus 236 ----------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 305 (558)
+++.|+.|++++|.|..+-+++...+++|++|+++.|+|+..-+..|..
T Consensus 281 l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~--------------------- 339 (873)
T KOG4194|consen 281 LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV--------------------- 339 (873)
T ss_pred hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH---------------------
Confidence 5788999999999999888889999999999999999998555555543
Q ss_pred ccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeec
Q 037792 306 LDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNL 385 (558)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 385 (558)
+..|++|.|++|.+.......|..+.+|++|||
T Consensus 340 -----------------------------------------------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 340 -----------------------------------------------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred -----------------------------------------------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 788999999999998777788999999999999
Q ss_pred cCCcCCccch---hhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCCcccccCCCCC
Q 037792 386 SHNFLSGSIP---ESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFL 462 (558)
Q Consensus 386 s~N~l~~~~~---~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~ 462 (558)
++|.++..+- ..|.++++|+.|++.+|+|..+....|..++.|++|||.+|.|...-|..-.-..++.+.+..-.++
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFL 452 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceE
Confidence 9999876543 4688999999999999999988888999999999999999999976666433346777778778889
Q ss_pred CCCCC----------------CCCCCCCCCCCCC
Q 037792 463 CGPAI----------------NKGCTNLPELLEP 480 (558)
Q Consensus 463 C~~~~----------------~~~c~~~~~~~~~ 480 (558)
|+|.+ ...|..|+.+.+.
T Consensus 453 CDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~ 486 (873)
T KOG4194|consen 453 CDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQ 486 (873)
T ss_pred EeccHHHHHHHHHhcccccceeeeccCCcccccc
Confidence 99953 2578888776543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-40 Score=316.62 Aligned_cols=370 Identities=24% Similarity=0.280 Sum_probs=327.7
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
-++||+++|.++ .+....|..+++|+.+++..|.++ .+|...+...+|+.|+|.+|.++ .+..+....++.|+.|||
T Consensus 80 t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 80 TQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL 156 (873)
T ss_pred eeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence 467999999999 787777778999999999999999 77877777888999999999999 666666688999999999
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
+.|.|+.+..+.|..-.++++|+|++|.|+....+.|..+.+|..|.|+.|+++...+..|..+++|+.|+|..|++...
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 99999987777888889999999999999999899999999999999999999988888899999999999999999855
Q ss_pred chhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC-----------CC
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN-----------EH 237 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-----------~~ 237 (558)
-.-.|+++++|+.|.+..|.|.......+ .+.++++|+|+.|+++..-..++.++++|+.|++++| -.
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 56789999999999999999998888777 8999999999999999888899999999999999999 35
Q ss_pred CCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccch
Q 037792 238 SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNS 317 (558)
Q Consensus 238 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (558)
++|+.|++++|+++...+++|..++.|++|++++|.++..-...|..
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~--------------------------------- 363 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG--------------------------------- 363 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH---------------------------------
Confidence 78999999999999999999999999999999999986221112211
Q ss_pred hhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCC---CccccCccCCCeeeccCCcCCccc
Q 037792 318 TVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDI---PSEIGDLQNIHGLNLSHNFLSGSI 394 (558)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~ 394 (558)
+++|++|||++|.++..+ ...|.++++|+.|++.+|++..+.
T Consensus 364 -----------------------------------lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 364 -----------------------------------LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred -----------------------------------hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 889999999999987443 456889999999999999999777
Q ss_pred hhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCC
Q 037792 395 PESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTF 451 (558)
Q Consensus 395 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l 451 (558)
..+|.++++|++|||.+|.|..+-|..|..+ .|+.|-+..-.+.|.+.-.|..+++
T Consensus 409 krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWL 464 (873)
T ss_pred hhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHH
Confidence 7899999999999999999999999999999 8999999888888777765444433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.5e-36 Score=281.99 Aligned_cols=397 Identities=28% Similarity=0.376 Sum_probs=279.7
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
..+..|++|++++|.+. ++|+.++. +..++.+++++|++. .+|+.+..+.+++.+++++|.+. ++++++ +.+..+
T Consensus 65 ~nL~~l~vl~~~~n~l~-~lp~aig~-l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l 139 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLS-QLPAAIGE-LEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDL 139 (565)
T ss_pred hcccceeEEEeccchhh-hCCHHHHH-HHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhh
Confidence 35566777888888887 77777776 667777777777777 66777777777777777777777 666665 456666
Q ss_pred CEEEccCCccCccCchhhcCCCccCeeecccccccc----------------------ccchhhcCCCCCCEEEccCCcC
Q 037792 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSG----------------------KIKDGLLRSTELMVLDISNNRL 142 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~----------------------~~~~~~~~l~~L~~L~L~~n~l 142 (558)
+.++..+|++. ..|+++.++.++..+++.+|++.. ..|..++.+.+|+-|++.+|++
T Consensus 140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccc
Confidence 66666666665 345555555555555555555443 3444455555555555555555
Q ss_pred CCCCcccccCCCCCcEEEcccCcCcccchhh-hcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhh
Q 037792 143 SGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTF 221 (558)
Q Consensus 143 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 221 (558)
. ..| .|.+|..|.++.++.|.+. .+|.. ..+++++..|+++.|++++.+.....+.+|+.||+++|.++ ..|..+
T Consensus 219 ~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~Lp~sL 294 (565)
T KOG0472|consen 219 R-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSL 294 (565)
T ss_pred c-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc-cCCccc
Confidence 5 444 4556666666666666665 33333 34677777777877777777776666777778888888776 566667
Q ss_pred hCCCCCcEEEcCCC----------------------------------------------------CCCCcCEEEccCCc
Q 037792 222 FRGSALETLDLRIN----------------------------------------------------EHSNLRTLLLRGNY 249 (558)
Q Consensus 222 ~~~~~L~~L~l~~n----------------------------------------------------~~~~L~~L~l~~n~ 249 (558)
+++ .|+.|.+.+| .+.+.+.|++++-+
T Consensus 295 gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 777 7777777777 22357788888888
Q ss_pred CCCCchhhccCCC--CCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCC
Q 037792 250 LQGPIPHQLCHLR--KLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGND 327 (558)
Q Consensus 250 l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (558)
++..+.+.|..-. -.+.++++.|++. ++|..+..+..... ...+.
T Consensus 374 lt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT------------~l~ls-------------------- 420 (565)
T KOG0472|consen 374 LTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVT------------DLVLS-------------------- 420 (565)
T ss_pred cccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHH------------HHHhh--------------------
Confidence 8865555554432 3778999999997 77765554321100 00000
Q ss_pred ccccccceeeeeecccccccccc---hhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccC
Q 037792 328 GRMLGALVAVNFMTKNRYESYKG---DILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMI 404 (558)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 404 (558)
+...++.+ ..+++|+.|++++|-+. .+|..++.+..|++|++|+|++. .+|++...+..+
T Consensus 421 ---------------nn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l 483 (565)
T KOG0472|consen 421 ---------------NNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL 483 (565)
T ss_pred ---------------cCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH
Confidence 00001111 11788999999999888 78988999999999999999998 889999888899
Q ss_pred CeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCCcccccCCCCC
Q 037792 405 ESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFL 462 (558)
Q Consensus 405 ~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~ 462 (558)
+.+-.++|++....|+.+.++..|+.||+.+|.+....|..+....+..+.+.|||+.
T Consensus 484 Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 484 ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 9999999999988888899999999999999999988788888899999999999985
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.8e-33 Score=274.67 Aligned_cols=356 Identities=26% Similarity=0.389 Sum_probs=263.7
Q ss_pred cCCCccEEEccCCcCC-CCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 6 AQHGLHSLDISRNSFS-GKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~-~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
-++-.+-.|+++|.++ +.+|.++-+ ++++++|.|...++. .+|+.++.+.+|++|.+++|+++ .+..++ ..++.|
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~L 80 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRL 80 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhh
Confidence 3455677899999998 578888877 889999999988888 78999999999999999999988 555555 678899
Q ss_pred CEEEccCCccCc-cCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEccc
Q 037792 85 EWLDLSNNNFVG-QIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSK 163 (558)
Q Consensus 85 ~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 163 (558)
+.+.+.+|++.. -+|..+..+..|+.|+|++|++. ..|..+...+++-.|+|++|+|..+....|.++..|-.|||++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 999999888743 46778888999999999999987 6788888888999999999999866556677888899999999
Q ss_pred CcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcC-cccchhhhhCCCCCcEEEcCCCC-----
Q 037792 164 NLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNAL-GGSIPNTFFRGSALETLDLRINE----- 236 (558)
Q Consensus 164 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~l~~n~----- 236 (558)
|++. .+|.....+..|++|.|++|.+...-...+ .+.+|+.|++++.+- ...+|..+..+.+|..+|++.|.
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP 238 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP 238 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch
Confidence 9988 566677888899999999998765433333 677888888888543 23567777776666666666663
Q ss_pred -----CCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhccccccc
Q 037792 237 -----HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYV 311 (558)
Q Consensus 237 -----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (558)
+++|+.|++++|.++ ..........+|+.|+++.|+++ .+|++++.
T Consensus 239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK--------------------------- 289 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK--------------------------- 289 (1255)
T ss_pred HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh---------------------------
Confidence 234555666666555 22333344455566666666655 45555544
Q ss_pred CcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCC-CCCccccCccCCCeeeccCCcC
Q 037792 312 SNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTG-DIPSEIGDLQNIHGLNLSHNFL 390 (558)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l 390 (558)
++.|+.|.+.+|++.- -+|..++.+.+|+++..++|.+
T Consensus 290 -----------------------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 290 -----------------------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred -----------------------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 5666677777777652 3566777777777777777777
Q ss_pred CccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCc
Q 037792 391 SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439 (558)
Q Consensus 391 ~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~ 439 (558)
. ..|+.+..+..|+.|.|++|++. .+|+.+.-++.|+.||++.|+=.
T Consensus 329 E-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 329 E-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred c-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 6 67777777777777777777776 56777777777777777777655
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.4e-33 Score=275.50 Aligned_cols=359 Identities=25% Similarity=0.346 Sum_probs=309.1
Q ss_pred CCCccEEEccCCcCC-CCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCe
Q 037792 32 LPKLVYMNISKNSFE-GNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWA 110 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 110 (558)
+|-.+-.|+++|.++ +..|.....+.+++.|.|...++. .+|+++ +.+.+|++|.+++|++. .+...+..++.|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 567788999999998 678999999999999999999998 899988 78999999999999987 45677899999999
Q ss_pred eeccccccc-cccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccc
Q 037792 111 LYLYNNNFS-GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN 189 (558)
Q Consensus 111 L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 189 (558)
+.+..|++. .-+|..+.++..|+.|||++|++. ..|..+..-.++-.|+|++|.|..+....|.++..|-.|+|++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 999999876 346777889999999999999999 788888888899999999999996666667899999999999999
Q ss_pred cccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC------------CCCCcCEEEccCCcCCCCchhh
Q 037792 190 LSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN------------EHSNLRTLLLRGNYLQGPIPHQ 257 (558)
Q Consensus 190 i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n------------~~~~L~~L~l~~n~l~~~~~~~ 257 (558)
+...++....+..|++|.|++|.+.-.--..+..+++|++|.+++. .+.+|..+|++.|.+. .+|+.
T Consensus 162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 9999988889999999999999886444445556678888888876 4568889999999988 78899
Q ss_pred ccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceee
Q 037792 258 LCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAV 337 (558)
Q Consensus 258 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (558)
+..+++|+.|++++|+|+. +.....
T Consensus 241 ly~l~~LrrLNLS~N~ite-L~~~~~------------------------------------------------------ 265 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITE-LNMTEG------------------------------------------------------ 265 (1255)
T ss_pred HhhhhhhheeccCcCceee-eeccHH------------------------------------------------------
Confidence 9999999999999999862 111111
Q ss_pred eeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCc-cchhhhhccccCCeEeCCCCcccc
Q 037792 338 NFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSG-SIPESFSNLKMIESLDLSHNKLNG 416 (558)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~i~~ 416 (558)
.-.+|++|++|+|+++ .+|+.++.++.|+.|.+.+|+++- -+|+.++.+.+|+.+..++|.+.
T Consensus 266 --------------~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE- 329 (1255)
T KOG0444|consen 266 --------------EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE- 329 (1255)
T ss_pred --------------HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-
Confidence 1467899999999999 889999999999999999999764 37999999999999999999998
Q ss_pred cCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCCcccccCCCCCCCCC
Q 037792 417 QIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 417 ~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
..|..+..+..|+.|.+++|++.+.......+..+..+++..||-+--+|
T Consensus 330 lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 330 LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 88999999999999999999999543336667788899999999877554
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=6.6e-34 Score=264.43 Aligned_cols=349 Identities=26% Similarity=0.429 Sum_probs=204.8
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLD 88 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 88 (558)
+|+.+++++|.+. .+|++++. +-.+..++..+|+++ ..|.++.++.++..+++.+|.++ ..|+.... ++.|++|+
T Consensus 115 ~l~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld 189 (565)
T KOG0472|consen 115 SLVKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLD 189 (565)
T ss_pred hhhhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcc
Confidence 3444444444444 44444444 334444444444444 33444444444444444444444 33333322 44455555
Q ss_pred ccCCccCccCchhhcCCCccCeeecccccc----------------------ccccchhhcCCCCCCEEEccCCcCCCCC
Q 037792 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNF----------------------SGKIKDGLLRSTELMVLDISNNRLSGHI 146 (558)
Q Consensus 89 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i----------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 146 (558)
...|-++ .+|+.++.+.+|..|++..|++ .....+...+++++..||+..|+++ ..
T Consensus 190 ~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~ 267 (565)
T KOG0472|consen 190 CNSNLLE-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EV 267 (565)
T ss_pred cchhhhh-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cC
Confidence 5444443 3444455555555555555554 4222223334555555555555555 45
Q ss_pred cccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccC-------------------------------
Q 037792 147 PSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMI------------------------------- 195 (558)
Q Consensus 147 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~------------------------------- 195 (558)
|+.+.-+.+|+.||+++|.++ ..|..++++ +|+.|.+.+|.+..+..
T Consensus 268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred chHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 555555555555555555555 445555555 55555555554321100
Q ss_pred -------CCc----CCCCccEEEccCCcCcccchhhhhCCCC---CcEEEcCCCCCC-----------CcCEEEccCCcC
Q 037792 196 -------STL----NLSSVEHLYLQNNALGGSIPNTFFRGSA---LETLDLRINEHS-----------NLRTLLLRGNYL 250 (558)
Q Consensus 196 -------~~~----~~~~L~~L~l~~n~l~~~~~~~~~~~~~---L~~L~l~~n~~~-----------~L~~L~l~~n~l 250 (558)
..+ ..-+.+.|++++-+++ ..|...+.... ....+++.|++. -++.+.+++|.+
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc
Confidence 000 1123344444444444 22322222211 445555555221 123344555555
Q ss_pred CCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccc
Q 037792 251 QGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRM 330 (558)
Q Consensus 251 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (558)
. .+|..++.+++|..|++++|.+. .+|..++.
T Consensus 425 s-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~---------------------------------------------- 456 (565)
T KOG0472|consen 425 S-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS---------------------------------------------- 456 (565)
T ss_pred c-cchHHHHhhhcceeeecccchhh-hcchhhhh----------------------------------------------
Confidence 4 56667777888888888877765 55555443
Q ss_pred cccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCC
Q 037792 331 LGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLS 410 (558)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 410 (558)
+..|+.||+++|++. .+|+.+..+..++.+-.++|++....|+.+.++.+|..|||.
T Consensus 457 ----------------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~ 513 (565)
T KOG0472|consen 457 ----------------------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ 513 (565)
T ss_pred ----------------------hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence 566999999999999 889888888888888888999998888889999999999999
Q ss_pred CCcccccCchhcccCCCCCEEecCCCCCc
Q 037792 411 HNKLNGQIPPQLTELHSLSTFDVSYNNLS 439 (558)
Q Consensus 411 ~N~i~~~~~~~l~~l~~L~~L~l~~N~l~ 439 (558)
+|.+. .+|..++++++|++|+++||++.
T Consensus 514 nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 514 NNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CCchh-hCChhhccccceeEEEecCCccC
Confidence 99998 78888999999999999999998
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=1.9e-29 Score=257.64 Aligned_cols=412 Identities=28% Similarity=0.320 Sum_probs=261.4
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCE
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEW 86 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 86 (558)
+-+|+.||+++|.+. ..|..+.. +++|+.|.++.|.|. ..|.+..++.+|+++.|.+|.+. ..|.++ ..+++|+.
T Consensus 44 ~v~L~~l~lsnn~~~-~fp~~it~-l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~-~~lknl~~ 118 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQIS-SFPIQITL-LSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASI-SELKNLQY 118 (1081)
T ss_pred eeeeEEeeccccccc-cCCchhhh-HHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhH-Hhhhcccc
Confidence 334777777777776 67766665 667777777777666 45666677777777777777766 666665 56677777
Q ss_pred EEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcC
Q 037792 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLL 166 (558)
Q Consensus 87 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 166 (558)
|++++|.+. ..|..+..++.++.+..++|..... ++. ..++.+++..|.+.+.++..+..+.. .|+|.+|.+
T Consensus 119 LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~-~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~ 190 (1081)
T KOG0618|consen 119 LDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQ-TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEM 190 (1081)
T ss_pred cccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcc-ccchhhhhhhhhcccchhcchhhhhe--eeecccchh
Confidence 777777665 3455555555555555555511100 111 11444444444444444444433333 355555544
Q ss_pred cccchhhh-----------------cCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcE
Q 037792 167 EGNIPVQF-----------------NNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALET 229 (558)
Q Consensus 167 ~~~~~~~~-----------------~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 229 (558)
....-..+ -.-++|+.|+.++|.++... ..+...+|++++++.|+++ .+|+++..+.+|+.
T Consensus 191 ~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~ 268 (1081)
T KOG0618|consen 191 EVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD-VHPVPLNLQYLDISHNNLS-NLPEWIGACANLEA 268 (1081)
T ss_pred hhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec-cccccccceeeecchhhhh-cchHHHHhcccceE
Confidence 31100000 11256677777777776322 2234678999999999998 66799999999999
Q ss_pred EEcCCC----------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhccccc--cc---ccCc
Q 037792 230 LDLRIN----------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFS--RV---ENGY 294 (558)
Q Consensus 230 L~l~~n----------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~--~~---~~~~ 294 (558)
++...| ...+|+.|....|.+. -+|.....++.|+.|++..|++. ..|+.+...... +. ..+.
T Consensus 269 l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 269 LNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred ecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcc
Confidence 999998 3467888888889887 56767788899999999999996 566543332211 11 1111
Q ss_pred cccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccc
Q 037792 295 LYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEI 374 (558)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 374 (558)
+...+ .+.......+.++++-.+ .+...-+.-+. .+++|++|+|++|++.......+
T Consensus 347 l~~lp---------~~~e~~~~~Lq~LylanN------------~Ltd~c~p~l~--~~~hLKVLhLsyNrL~~fpas~~ 403 (1081)
T KOG0618|consen 347 LSTLP---------SYEENNHAALQELYLANN------------HLTDSCFPVLV--NFKHLKVLHLSYNRLNSFPASKL 403 (1081)
T ss_pred ccccc---------cccchhhHHHHHHHHhcC------------cccccchhhhc--cccceeeeeecccccccCCHHHH
Confidence 11111 000111111111111100 00000001111 17899999999999995555667
Q ss_pred cCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCC-CCCcccCCCCc
Q 037792 375 GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPI-PDKEQFSTFDE 453 (558)
Q Consensus 375 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~-p~~~~~~~l~~ 453 (558)
.++..|++|+||+|+++ .+|+.+..++.|++|....|.+. ..| .+..++.|+.+|++.|+++... |.....+.++.
T Consensus 404 ~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lky 480 (1081)
T KOG0618|consen 404 RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKY 480 (1081)
T ss_pred hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccce
Confidence 88999999999999999 67899999999999999999998 566 7889999999999999998643 33333388999
Q ss_pred ccccCCCC
Q 037792 454 SSYRGNLF 461 (558)
Q Consensus 454 ~~~~~N~~ 461 (558)
++++||++
T Consensus 481 LdlSGN~~ 488 (1081)
T KOG0618|consen 481 LDLSGNTR 488 (1081)
T ss_pred eeccCCcc
Confidence 99999996
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=2.9e-28 Score=249.03 Aligned_cols=351 Identities=31% Similarity=0.458 Sum_probs=230.0
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
....+|+.|+++.|.+. .+|..... +.+|+++.|.+|.+. ..|..+..+++|++|+++.|.+. .+|.-+ ..+..+
T Consensus 65 t~l~~L~~ln~s~n~i~-~vp~s~~~-~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~ 139 (1081)
T KOG0618|consen 65 TLLSHLRQLNLSRNYIR-SVPSSCSN-MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAE 139 (1081)
T ss_pred hhHHHHhhcccchhhHh-hCchhhhh-hhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhH-HhhhHH
Confidence 35668888999999988 88866654 788999999988887 78888999999999999998886 555432 122222
Q ss_pred -------------------CEEEccCCccCccCchhhcCCCccCeeeccccccccccchh--------------------
Q 037792 85 -------------------EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDG-------------------- 125 (558)
Q Consensus 85 -------------------~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-------------------- 125 (558)
+.+++..|.+.+.++..+..++. .|++++|.+.......
T Consensus 140 ~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~ 217 (1081)
T KOG0618|consen 140 EELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEIS 217 (1081)
T ss_pred HHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEec
Confidence 22333333332222222222222 3444444443110000
Q ss_pred -------------------hcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecc
Q 037792 126 -------------------LLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186 (558)
Q Consensus 126 -------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 186 (558)
-....+|++++++.|++. .+|+++..+.+|+.++..+|.+. .+|..+..+.+|+.|.+.
T Consensus 218 g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAA 295 (1081)
T ss_pred CcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhh
Confidence 011234555555555555 34455555555555555555554 444444555555555555
Q ss_pred ccccccccCCCcCCCCccEEEccCCcCcccchhhhhC-CC-CCcEEEcCCC-----------CCCCcCEEEccCCcCCCC
Q 037792 187 ENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFR-GS-ALETLDLRIN-----------EHSNLRTLLLRGNYLQGP 253 (558)
Q Consensus 187 ~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~-~L~~L~l~~n-----------~~~~L~~L~l~~n~l~~~ 253 (558)
.|.+...++..-....|++|+|..|.+. ..|+.+.. .. +|+.+..+.| .++.|+.|++.+|.+++.
T Consensus 296 ~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 296 YNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence 5555554444435566666666666665 33332211 11 1333333333 346789999999999988
Q ss_pred chhhccCCCCCCEEEcccCcCccccChh-hhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccc
Q 037792 254 IPHQLCHLRKLGIMDISHNRLNGSIPAC-ITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLG 332 (558)
Q Consensus 254 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (558)
....+.+...|++|++++|++. .+|+. +.+
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~k------------------------------------------------ 405 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLN-SFPASKLRK------------------------------------------------ 405 (1081)
T ss_pred chhhhccccceeeeeecccccc-cCCHHHHhc------------------------------------------------
Confidence 8888999999999999999996 45543 333
Q ss_pred cceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCC
Q 037792 333 ALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 412 (558)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 412 (558)
++.|+.|++|+|.++ .+|+....++.|++|...+|++. ..| .+..+++|+.+|++.|
T Consensus 406 --------------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 406 --------------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred --------------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccc
Confidence 778899999999999 77899999999999999999998 677 7899999999999999
Q ss_pred ccccc-CchhcccCCCCCEEecCCCCC
Q 037792 413 KLNGQ-IPPQLTELHSLSTFDVSYNNL 438 (558)
Q Consensus 413 ~i~~~-~~~~l~~l~~L~~L~l~~N~l 438 (558)
+++.. +|.... -+.|++||++||.-
T Consensus 463 ~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 463 NLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhhhhCC-CcccceeeccCCcc
Confidence 99854 344333 38999999999984
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=1e-27 Score=223.00 Aligned_cols=387 Identities=20% Similarity=0.219 Sum_probs=236.0
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEccc-ccCCccchHHHHhcCCCCCEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSS-NNFAGELSQSLVINCFSLEWL 87 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L 87 (558)
.-..++|..|.|+ .||+..|..+++||.||||+|.|+.+.|++|.+++.|..|-+-+ |+|+ .+|...|.++..++.|
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 4466899999998 89999998899999999999999989999999999888777766 8888 8999999999999999
Q ss_pred EccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCC------------CCCcccccCCCC
Q 037792 88 DLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLS------------GHIPSWMGNFST 155 (558)
Q Consensus 88 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~ 155 (558)
.+.-|++.......|..++++..|.+.+|.+..+....|..+..++.+.+..|.+- ...|..+++..-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 99988888877888999999999999999988666668888888888888877621 112222333332
Q ss_pred CcEEEcccCcCcccch--------------------------hhhcCCcccceeeccccccccccCCCc-CCCCccEEEc
Q 037792 156 LQILSMSKNLLEGNIP--------------------------VQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYL 208 (558)
Q Consensus 156 L~~L~L~~n~l~~~~~--------------------------~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l 208 (558)
.....+.+.++..+.+ ..|..+++|++|++++|+++++....+ ....+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 3323333332221111 234555555555555555555544444 4555555555
Q ss_pred cCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccc-cChhhhcccc
Q 037792 209 QNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGS-IPACITNMLF 287 (558)
Q Consensus 209 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~ 287 (558)
..|++......+|. ++.+|+.|++.+|+|+...|.+|..+..|.+|++-.|++.-. --.+++..-.
T Consensus 306 ~~N~l~~v~~~~f~-------------~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr 372 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQ-------------GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLR 372 (498)
T ss_pred CcchHHHHHHHhhh-------------ccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHh
Confidence 55555433333333 457778888999999999999999999999999998877411 0122222110
Q ss_pred cc-cccCccccccch-hhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhccc-CEEEccCC
Q 037792 288 SR-VENGYLYGFDIV-LRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELM-AGLDLSNN 364 (558)
Q Consensus 288 ~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~Ls~n 364 (558)
.. ...+.-.+.+.. ......+.....+... .+.+ . ....-...|. -.+.+ ++...|+.
T Consensus 373 ~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~--------~~ee-------~---~~~~s~~cP~-~c~c~~tVvRcSnk 433 (498)
T KOG4237|consen 373 KKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG--------GPEE-------L---GCLTSSPCPP-PCTCLDTVVRCSNK 433 (498)
T ss_pred hCCCCCCCCCCCCchhccccchhccccccccC--------Cccc-------c---CCCCCCCCCC-CcchhhhhHhhccc
Confidence 00 000000000000 0000000000000000 0000 0 0000000000 01122 22345555
Q ss_pred CCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCC
Q 037792 365 ELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYN 436 (558)
Q Consensus 365 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N 436 (558)
.+. .+|..+. ..-++|.+.+|.++ .+|.. .+.+| .+|+++|+|+...-..|.++++|.+|-|++|
T Consensus 434 ~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 434 LLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred chh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 555 4443322 34567888888888 55554 55677 8888888888666677888888888888776
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=6e-24 Score=241.24 Aligned_cols=297 Identities=24% Similarity=0.262 Sum_probs=168.3
Q ss_pred CCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEcc
Q 037792 59 LRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDIS 138 (558)
Q Consensus 59 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 138 (558)
|+.|.+.++.+. .+|..+ ...+|++|++.+|.+. ..+..+..+++|+.|+++++......|. +..+++|++|+++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence 445555444444 444332 2344455555544443 2333444444555555544332222222 3444455555554
Q ss_pred CCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccch
Q 037792 139 NNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIP 218 (558)
Q Consensus 139 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 218 (558)
+|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|......+.. ..+|+.|++++|.+. .+|
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP 741 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFP 741 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-ccc
Confidence 444333444444444555555554443222333322 3444555555444322211111 234445555544443 223
Q ss_pred hhhhCCCCCcEEEcCCC------------------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccCh
Q 037792 219 NTFFRGSALETLDLRIN------------------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPA 280 (558)
Q Consensus 219 ~~~~~~~~L~~L~l~~n------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 280 (558)
..+ .+++|+.|.+..+ .+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|.
T Consensus 742 ~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 742 SNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred ccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 222 2334444433321 246889999999987778899999999999999999865444553
Q ss_pred hhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEE
Q 037792 281 CITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLD 360 (558)
Q Consensus 281 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 360 (558)
.+ + +++|+.|+
T Consensus 821 ~~-~--------------------------------------------------------------------L~sL~~L~ 831 (1153)
T PLN03210 821 GI-N--------------------------------------------------------------------LESLESLD 831 (1153)
T ss_pred CC-C--------------------------------------------------------------------ccccCEEE
Confidence 22 1 67788888
Q ss_pred ccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCC
Q 037792 361 LSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNL 438 (558)
Q Consensus 361 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l 438 (558)
+++|......|.. .++|++|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.-
T Consensus 832 Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 832 LSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 8887655455543 367888899998888 5788888888999999988554335666777888888888888853
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=5.5e-23 Score=233.47 Aligned_cols=331 Identities=19% Similarity=0.222 Sum_probs=235.2
Q ss_pred CCchhhhCCCCCCEEEcccccC------CccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccc
Q 037792 48 NIPSSIGKMQGLRLLDVSSNNF------AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK 121 (558)
Q Consensus 48 ~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~ 121 (558)
..+.+|.++++|+.|.+..+.. ...+|.++..-..+|+.|++.++.+. ..|..| ...+|+.|++.+|.+. .
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence 3456788999999999976542 22456665333457999999999886 456666 5789999999999987 5
Q ss_pred cchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCC
Q 037792 122 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLS 201 (558)
Q Consensus 122 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~ 201 (558)
.+..+..+++|+.|+++++.....+|. ++.+++|+.|++++|.....+|..++.+++|+.|++++|...+..+....++
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~ 704 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLK 704 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCC
Confidence 677788899999999998875556664 7889999999999987666889999999999999999975444444444789
Q ss_pred CccEEEccCCcCcccchhhhhCCCCCcEEEcCCCC---------CCCcCEEEccCCcCC-------CCchhhccCCCCCC
Q 037792 202 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE---------HSNLRTLLLRGNYLQ-------GPIPHQLCHLRKLG 265 (558)
Q Consensus 202 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~---------~~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~ 265 (558)
+|+.|++++|.....+|.. .++|+.|++++|. +++|+.|++.++... ...+......++|+
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccch
Confidence 9999999998765455532 2456666666552 234444555442211 01111122234566
Q ss_pred EEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeeccccc
Q 037792 266 IMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRY 345 (558)
Q Consensus 266 ~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (558)
.|++++|...+.+|..+.+
T Consensus 782 ~L~Ls~n~~l~~lP~si~~------------------------------------------------------------- 800 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQN------------------------------------------------------------- 800 (1153)
T ss_pred heeCCCCCCccccChhhhC-------------------------------------------------------------
Confidence 6666666554455554433
Q ss_pred ccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccC
Q 037792 346 ESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL 425 (558)
Q Consensus 346 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l 425 (558)
+++|+.|++++|...+.+|... ++++|+.|++++|.....+|.. .++|+.|+|++|.+. .+|..+..+
T Consensus 801 -------L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l 868 (1153)
T PLN03210 801 -------LHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKF 868 (1153)
T ss_pred -------CCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcC
Confidence 7889999999986555677655 7899999999998765555543 368999999999998 678889999
Q ss_pred CCCCEEecCCCCCcCCCCC-CcccCCCCcccccC
Q 037792 426 HSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRG 458 (558)
Q Consensus 426 ~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~ 458 (558)
++|+.|++++|+-...+|. ...++.+..+++.+
T Consensus 869 ~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 869 SNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD 902 (1153)
T ss_pred CCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence 9999999998543334443 44455565555554
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=4e-25 Score=205.89 Aligned_cols=332 Identities=21% Similarity=0.192 Sum_probs=222.3
Q ss_pred EEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccC-
Q 037792 61 LLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISN- 139 (558)
Q Consensus 61 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~- 139 (558)
..+.++-.++ ++|..+ .+.-..++|..|.|+.+.+.+|+.+++|+.|+|++|.|+.+.|++|.++++|..|-+.+
T Consensus 50 ~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred eEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 4555666666 777644 44667888888888887788888888899999999888888888888888887777766
Q ss_pred CcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccch
Q 037792 140 NRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIP 218 (558)
Q Consensus 140 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~ 218 (558)
|+|+......|.++..++.|.+.-|++..+..+.|..++++..|.+.+|.+..+....+ .+.+++.+++..|.+....
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC- 204 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC- 204 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc-
Confidence 88887777788888888888888888887788888889999999999888887777555 7788888888888753211
Q ss_pred hhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccc
Q 037792 219 NTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGF 298 (558)
Q Consensus 219 ~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~ 298 (558)
.++.+... +. ..|..++..+...-..+.+.++...-+..|..... +.
T Consensus 205 -----------------nL~wla~~-~a------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e---------sl 251 (498)
T KOG4237|consen 205 -----------------NLPWLADD-LA------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE---------SL 251 (498)
T ss_pred -----------------ccchhhhH-Hh------hchhhcccceecchHHHHHHHhcccchhhhhhhHH---------hH
Confidence 01111100 00 11112222233333333333332221222211000 00
Q ss_pred cchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCcc
Q 037792 299 DIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQ 378 (558)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 378 (558)
.......+..+...+... | +.+++|++|++++|.++.+-+.+|.+..
T Consensus 252 --~s~~~~~d~~d~~cP~~c-----------------------------f--~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 252 --PSRLSSEDFPDSICPAKC-----------------------------F--KKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred --HHhhccccCcCCcChHHH-----------------------------H--hhcccceEeccCCCccchhhhhhhcchh
Confidence 000000000000000000 0 1178888899999998888888888889
Q ss_pred CCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCCcccccC
Q 037792 379 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRG 458 (558)
Q Consensus 379 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~ 458 (558)
++++|.|..|++.......|.++.+|+.|+|++|+|+...|..|+.+.+|.+|++-.|++.|.+.-.|.-.+++.....|
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~ 378 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVG 378 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCC
Confidence 99999999998886666788888999999999999988888889888899999998888887776655445555555566
Q ss_pred CCCCCC
Q 037792 459 NLFLCG 464 (558)
Q Consensus 459 N~~~C~ 464 (558)
||- |.
T Consensus 379 ~~~-Cq 383 (498)
T KOG4237|consen 379 NPR-CQ 383 (498)
T ss_pred CCC-CC
Confidence 663 44
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=7.1e-21 Score=201.17 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=17.3
Q ss_pred CCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCch
Q 037792 380 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP 420 (558)
Q Consensus 380 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~ 420 (558)
|+.|++++|+++ .+|+.+..+++|+.|+|++|.+++..+.
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 344444444444 3344444444444444444444443333
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.4e-20 Score=198.94 Aligned_cols=268 Identities=25% Similarity=0.360 Sum_probs=204.6
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEE
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 87 (558)
.+-..|+++.+.++ .+|..+. ++|+.|++++|.++. +|. ..++|++|++++|+++ .+|. ..++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC----ccccccee
Confidence 34568999999999 8998775 489999999999984 554 3578999999999999 6774 24689999
Q ss_pred EccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCc
Q 037792 88 DLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLE 167 (558)
Q Consensus 88 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (558)
++++|.+.. +|.. ..+|+.|++++|.++. +|. .+++|+.|++++|.+++ +|... .+|+.|++++|.+.
T Consensus 268 ~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 268 SIFSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT 335 (788)
T ss_pred eccCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCCc---ccccccccccCccc
Confidence 999998874 3332 3568899999999874 443 24789999999999984 44422 45888899999987
Q ss_pred ccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccC
Q 037792 168 GNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRG 247 (558)
Q Consensus 168 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~ 247 (558)
+ +|.. ..+|+.|++++|+++..+.. .++|+.|++++|.+.. +|.. .++|+.|++++
T Consensus 336 ~-LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~-LP~l----------------~~~L~~LdLs~ 391 (788)
T PRK15387 336 S-LPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-LPAL----------------PSGLKELIVSG 391 (788)
T ss_pred c-cccc---ccccceEecCCCccCCCCCC---Ccccceehhhcccccc-Cccc----------------ccccceEEecC
Confidence 3 4532 24799999999999876542 3678889999998873 4421 24577788888
Q ss_pred CcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCC
Q 037792 248 NYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGND 327 (558)
Q Consensus 248 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (558)
|.+++ +|.. .++|+.|++++|++++ +|..
T Consensus 392 N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---------------------------------------------- 420 (788)
T PRK15387 392 NRLTS-LPVL---PSELKELMVSGNRLTS-LPML---------------------------------------------- 420 (788)
T ss_pred CcccC-CCCc---ccCCCEEEccCCcCCC-CCcc----------------------------------------------
Confidence 88874 4432 3679999999999873 4421
Q ss_pred ccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhcc
Q 037792 328 GRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNL 401 (558)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 401 (558)
+.+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..+
T Consensus 421 -------------------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 421 -------------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred -------------------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 345677999999999 789899999999999999999998877766443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.5e-19 Score=190.73 Aligned_cols=202 Identities=20% Similarity=0.356 Sum_probs=104.2
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLD 88 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 88 (558)
+.+.|+++++.++ .+|..+. ++|+.|++++|.++ .+|..+. .+|++|++++|.++ .+|..+ ..+|+.|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh---hccccEEE
Confidence 3455666666665 5555442 35566666666665 3343332 35666666666555 455433 13455555
Q ss_pred ccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc
Q 037792 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168 (558)
Q Consensus 89 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (558)
+++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|+++
T Consensus 248 Ls~N~L~-~LP~~l~--------------------------s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt- 296 (754)
T PRK15370 248 LSINRIT-ELPERLP--------------------------SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR- 296 (754)
T ss_pred CcCCccC-cCChhHh--------------------------CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-
Confidence 5555554 2233221 24555555555554 2333222 34555555555555
Q ss_pred cchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCC
Q 037792 169 NIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGN 248 (558)
Q Consensus 169 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n 248 (558)
.+|..+. ++|+.|++++|.++..+... .++|+.|++++|.+++ +|..+ .++|+.|++++|
T Consensus 297 ~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l---------------~~sL~~L~Ls~N 356 (754)
T PRK15370 297 TLPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPASL---------------PPELQVLDVSKN 356 (754)
T ss_pred cCcccch--hhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CChhh---------------cCcccEEECCCC
Confidence 2332221 35666666666666543322 2566777777776653 33322 135556666666
Q ss_pred cCCCCchhhccCCCCCCEEEcccCcCc
Q 037792 249 YLQGPIPHQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 249 ~l~~~~~~~~~~l~~L~~L~l~~n~l~ 275 (558)
.++ .+|..+. ++|+.|++++|+++
T Consensus 357 ~L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 357 QIT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred CCC-cCChhhc--CCcCEEECCCCcCC
Confidence 665 3444332 46777777777775
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=4.8e-19 Score=188.61 Aligned_cols=247 Identities=23% Similarity=0.361 Sum_probs=185.8
Q ss_pred CCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEE
Q 037792 57 QGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLD 136 (558)
Q Consensus 57 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 136 (558)
.+...|+++++.++ .+|..+ .++|+.|++++|+++. +|..+. ++|++|++++|.++. +|..+ .++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATL--PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhh--hccccEEE
Confidence 45678888888888 677654 3578889999998884 455443 588999999998874 45544 35799999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCccc
Q 037792 137 ISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGS 216 (558)
Q Consensus 137 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~ 216 (558)
+++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|.++..+... .++|+.|++++|.++.
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTA- 318 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccc--hhhHHHHHhcCCcccc-
Confidence 9999998 5666554 57999999999998 5666553 58999999999998765433 2579999999999973
Q ss_pred chhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccc
Q 037792 217 IPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLY 296 (558)
Q Consensus 217 ~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~ 296 (558)
+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+
T Consensus 319 LP~~l---------------~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l-------------- 365 (754)
T PRK15370 319 LPETL---------------PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL-------------- 365 (754)
T ss_pred CCccc---------------cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--------------
Confidence 44322 2467777777787774 455553 68999999999986 344322
Q ss_pred cccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccC
Q 037792 297 GFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGD 376 (558)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 376 (558)
.++|+.|++++|.++ .+|..+.
T Consensus 366 --------------------------------------------------------p~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 366 --------------------------------------------------------PPTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred --------------------------------------------------------cCCcCEEECCCCcCC-CCCHhHH-
Confidence 457889999999998 5565554
Q ss_pred ccCCCeeeccCCcCCccchhh----hhccccCCeEeCCCCccc
Q 037792 377 LQNIHGLNLSHNFLSGSIPES----FSNLKMIESLDLSHNKLN 415 (558)
Q Consensus 377 l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~i~ 415 (558)
..|+.|++++|+++ .+|+. +..++.+..|++.+|.++
T Consensus 388 -~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 47899999999998 44544 444588899999999987
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=4e-19 Score=175.81 Aligned_cols=86 Identities=23% Similarity=0.316 Sum_probs=48.1
Q ss_pred hcccCEEEccCCCCCCCCCcccc-----CccCCCeeeccCCcCCc----cchhhhhccccCCeEeCCCCccccc----Cc
Q 037792 353 LELMAGLDLSNNELTGDIPSEIG-----DLQNIHGLNLSHNFLSG----SIPESFSNLKMIESLDLSHNKLNGQ----IP 419 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~i~~~----~~ 419 (558)
+++|+.|++++|.+++.....+. ..+.|++|++++|.+++ .+...+..+++|+.+++++|.++.. ..
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 44556666666655532221111 13567777777777652 2234455556777777777777643 33
Q ss_pred hhcccC-CCCCEEecCCCCC
Q 037792 420 PQLTEL-HSLSTFDVSYNNL 438 (558)
Q Consensus 420 ~~l~~l-~~L~~L~l~~N~l 438 (558)
..+... +.|+.+++.+|++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 300 ESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhhcCCchhhcccCCCCC
Confidence 344444 5677777776654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=1.5e-18 Score=171.67 Aligned_cols=257 Identities=22% Similarity=0.243 Sum_probs=160.9
Q ss_pred EEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCC----CchhhhCCCCCCEEEcccccCCc------cchHHHHhcC
Q 037792 12 SLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGN----IPSSIGKMQGLRLLDVSSNNFAG------ELSQSLVINC 81 (558)
Q Consensus 12 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~~l 81 (558)
.|+|+++.+++.--..++..+++|++|+++++.++.. ++..+...+++++++++++.+.+ .++ ..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL-QGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH-HHHHhc
Confidence 4677777776333334444477788888888887532 34456667778888888877652 112 233557
Q ss_pred CCCCEEEccCCccCccCchhhcCCCc---cCeeecccccccc----ccchhhcCC-CCCCEEEccCCcCCCC----Cccc
Q 037792 82 FSLEWLDLSNNNFVGQIFPNYMNLTR---LWALYLYNNNFSG----KIKDGLLRS-TELMVLDISNNRLSGH----IPSW 149 (558)
Q Consensus 82 ~~L~~L~l~~n~i~~~~~~~~~~l~~---L~~L~l~~n~i~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~ 149 (558)
++|++|++++|.+.+..+..+..+.+ |++|++++|.+.. .....+..+ ++|+.|++++|.+++. .+..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 78888888888876555555555544 8888888887763 222344555 7888888888887732 2334
Q ss_pred ccCCCCCcEEEcccCcCccc----chhhhcCCcccceeeccccccccccCCC----c-CCCCccEEEccCCcCcccchhh
Q 037792 150 MGNFSTLQILSMSKNLLEGN----IPVQFNNLASLQILNISENNLSGSMIST----L-NLSSVEHLYLQNNALGGSIPNT 220 (558)
Q Consensus 150 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~-~~~~L~~L~l~~n~l~~~~~~~ 220 (558)
+..+++|+.|++++|.+.+. ++..+...++|+.|++++|.+.+..... + .+++|++|++++|.+++.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 56667888888888887632 2334455568888888888776432211 1 5677888888888876533333
Q ss_pred hhCCCCCcEEEcCCCCCCCcCEEEccCCcCCC----CchhhccCCCCCCEEEcccCcCccc
Q 037792 221 FFRGSALETLDLRINEHSNLRTLLLRGNYLQG----PIPHQLCHLRKLGIMDISHNRLNGS 277 (558)
Q Consensus 221 ~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~ 277 (558)
+... +. . ..+.|++|++++|.++. .+...+..+++|+++++++|.++..
T Consensus 241 l~~~--~~-----~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 241 LASA--LL-----S-PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHH--Hh-----c-cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 2211 00 0 12556666666666652 2334455567777777777777643
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.6e-18 Score=143.89 Aligned_cols=161 Identities=24% Similarity=0.376 Sum_probs=139.1
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
+.+++.|.+|+|+++ ..|..+..+.+|++|++++|++. ++|..+ +.+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 678889999999998 56778889999999999999998 888887 67899999999988876 678899999999999
Q ss_pred eccccccc-cccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecccccc
Q 037792 112 YLYNNNFS-GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL 190 (558)
Q Consensus 112 ~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i 190 (558)
|+.+|++. ...|+.|..+..|+-|++++|.+. .+|..++++++|+.|.+..|.+. .+|..++.+..|++|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 99988876 356788888889999999999998 77888899999999999999887 7888899999999999999998
Q ss_pred ccccCCCc
Q 037792 191 SGSMISTL 198 (558)
Q Consensus 191 ~~~~~~~~ 198 (558)
+..++...
T Consensus 186 ~vlppel~ 193 (264)
T KOG0617|consen 186 TVLPPELA 193 (264)
T ss_pred eecChhhh
Confidence 87776544
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.3e-18 Score=142.96 Aligned_cols=164 Identities=30% Similarity=0.495 Sum_probs=148.4
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCC
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLE 85 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 85 (558)
.+.+++.|.+|+|.++ .+|+.+.. +.+|+.|++++|+|+ .+|.+++.+++|+.|+++-|++. ..|.++ +.++.|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPALE 105 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchhh
Confidence 5677889999999999 99999987 899999999999999 78999999999999999999998 788876 8899999
Q ss_pred EEEccCCccCc-cCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccC
Q 037792 86 WLDLSNNNFVG-QIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164 (558)
Q Consensus 86 ~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 164 (558)
.||+.+|++.. ..|..|..++.|+-|++++|.+. ..|..++++++|+.|.+..|.+. ..|..++.+..|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999998865 56788999999999999999997 67888999999999999999998 78999999999999999999
Q ss_pred cCcccchhhhcCC
Q 037792 165 LLEGNIPVQFNNL 177 (558)
Q Consensus 165 ~l~~~~~~~~~~l 177 (558)
+++ .+|..++++
T Consensus 184 rl~-vlppel~~l 195 (264)
T KOG0617|consen 184 RLT-VLPPELANL 195 (264)
T ss_pred eee-ecChhhhhh
Confidence 999 666555543
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=1.7e-14 Score=153.44 Aligned_cols=118 Identities=36% Similarity=0.603 Sum_probs=105.9
Q ss_pred ccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecC
Q 037792 355 LMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVS 434 (558)
Q Consensus 355 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~ 434 (558)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|.+++.+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCC--cccCCCCcccccCCCCCCCCCCCCCCC
Q 037792 435 YNNLSGPIPDK--EQFSTFDESSYRGNLFLCGPAINKGCT 472 (558)
Q Consensus 435 ~N~l~~~~p~~--~~~~~l~~~~~~~N~~~C~~~~~~~c~ 472 (558)
+|+++|.+|.. ..+..+..+++.+|+..|+.+....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999972 223345677899999999877555563
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.26 E-value=2.3e-11 Score=129.65 Aligned_cols=92 Identities=33% Similarity=0.560 Sum_probs=84.9
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccC-CCCCEE
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL-HSLSTF 431 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l-~~L~~L 431 (558)
+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|+.++++++|+.|+|++|.+++.+|..+... .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 7889999999999999999999999999999999999999999999999999999999999999999988764 467899
Q ss_pred ecCCCCCcCCCCC
Q 037792 432 DVSYNNLSGPIPD 444 (558)
Q Consensus 432 ~l~~N~l~~~~p~ 444 (558)
++.+|+..|.+|.
T Consensus 521 ~~~~N~~lc~~p~ 533 (623)
T PLN03150 521 NFTDNAGLCGIPG 533 (623)
T ss_pred EecCCccccCCCC
Confidence 9999998876553
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=4.4e-13 Score=131.73 Aligned_cols=191 Identities=27% Similarity=0.349 Sum_probs=157.7
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
-...|++.|.+. .+|..+.. +..|+.+.+.+|.+. .+|.++.++..|++++++.|++. .+|..+ ..++ |+.|-+
T Consensus 77 t~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~l-C~lp-Lkvli~ 150 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGL-CDLP-LKVLIV 150 (722)
T ss_pred hhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhh-hcCc-ceeEEE
Confidence 345799999998 99988876 778999999999998 78899999999999999999998 788877 4454 899999
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
++|+++ .+|..++..+.|..|+.+.|.+. ..|..++.+.+|+.|.+..|++. ..|..+..+ .|..||++.|++. .
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-e
Confidence 999998 57788888899999999999997 57788889999999999999998 456666654 4889999999998 7
Q ss_pred chhhhcCCcccceeeccccccccccCCCc---CCCCccEEEccCC
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMISTL---NLSSVEHLYLQNN 211 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~~~~L~~L~l~~n 211 (558)
+|-.|..|+.|++|.|.+|.+..-+.... ...--++|+..-+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 89999999999999999999886544433 2223456666555
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=1.7e-11 Score=107.03 Aligned_cols=108 Identities=28% Similarity=0.350 Sum_probs=27.8
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCE
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEW 86 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 86 (558)
+.++++|+|++|.|+ .+. .+...+.+|+.|++++|.|+.. +.+..+++|++|++++|+++ .+.+.+...+++|++
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 345566666666665 443 3333355666666666666533 23555666666666666665 444333334566666
Q ss_pred EEccCCccCccC-chhhcCCCccCeeeccccccc
Q 037792 87 LDLSNNNFVGQI-FPNYMNLTRLWALYLYNNNFS 119 (558)
Q Consensus 87 L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~i~ 119 (558)
|++++|+|.... ...+..+++|+.|++.+|.+.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666666654311 123444555555555555544
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.9e-12 Score=123.50 Aligned_cols=183 Identities=25% Similarity=0.169 Sum_probs=98.2
Q ss_pred CCCccEEEccCCcCCCCCc-hhhhCCCCCCEEEcccccCCcc-chHHHHhcCCCCCEEEccCCccCccCch-hhcCCCcc
Q 037792 32 LPKLVYMNISKNSFEGNIP-SSIGKMQGLRLLDVSSNNFAGE-LSQSLVINCFSLEWLDLSNNNFVGQIFP-NYMNLTRL 108 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L 108 (558)
+.+|+...|.++.+..... .....+++++.|||+.|-+..- .-..+...+++|+.|+++.|++...... .-..++.|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 4566666666665542111 2455566666666666655421 1123445566666666666665421111 11245566
Q ss_pred Ceeeccccccccccc-hhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccc-hhhhcCCcccceeecc
Q 037792 109 WALYLYNNNFSGKIK-DGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNI-PVQFNNLASLQILNIS 186 (558)
Q Consensus 109 ~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~ 186 (558)
+.|.++.|.++.... .....+|+|+.|++..|...........-+..|+.|+|++|.+.+.. ....+.++.|+.|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 666676666653222 12334567777777766422222222333456777777777654221 1234566777777777
Q ss_pred ccccccccC-CC------cCCCCccEEEccCCcCc
Q 037792 187 ENNLSGSMI-ST------LNLSSVEHLYLQNNALG 214 (558)
Q Consensus 187 ~n~i~~~~~-~~------~~~~~L~~L~l~~n~l~ 214 (558)
.+.+..+.. .. ..+++|++|++..|++.
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 776654321 11 14677777777777774
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=1.2e-11 Score=115.08 Aligned_cols=236 Identities=22% Similarity=0.305 Sum_probs=155.9
Q ss_pred CCCccEEEccCCcCCCC----CchhhhCCCCCCEEEccccc---CCccchHHH------HhcCCCCCEEEccCCccCccC
Q 037792 32 LPKLVYMNISKNSFEGN----IPSSIGKMQGLRLLDVSSNN---FAGELSQSL------VINCFSLEWLDLSNNNFVGQI 98 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~------~~~l~~L~~L~l~~n~i~~~~ 98 (558)
...++.+++|+|.+... +.+.+.+.++|+..++++-. ....+|+.+ ...+++|++|+||.|.+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 56677777777777522 23445666777777776532 122344321 235668888888888776555
Q ss_pred chh----hcCCCccCeeeccccccccccch-------------hhcCCCCCCEEEccCCcCCCCC----cccccCCCCCc
Q 037792 99 FPN----YMNLTRLWALYLYNNNFSGKIKD-------------GLLRSTELMVLDISNNRLSGHI----PSWMGNFSTLQ 157 (558)
Q Consensus 99 ~~~----~~~l~~L~~L~l~~n~i~~~~~~-------------~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~ 157 (558)
++. +.++..|++|.|.+|.+.-.... ...+.+.|+.+..++|++.... ...|...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 443 35677888888888877522111 1234578999999999887432 24566678899
Q ss_pred EEEcccCcCccc----chhhhcCCcccceeeccccccccccCCC----c-CCCCccEEEccCCcCcccchhhhhCCCCCc
Q 037792 158 ILSMSKNLLEGN----IPVQFNNLASLQILNISENNLSGSMIST----L-NLSSVEHLYLQNNALGGSIPNTFFRGSALE 228 (558)
Q Consensus 158 ~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 228 (558)
.+.+..|.+... ....+..+++|+.|++.+|.++...... + .++.|+.|++++|.+......++... ++
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a--l~ 266 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA--LK 266 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH--Hh
Confidence 999999887532 3355788899999999999876432211 1 56789999999998876555444321 00
Q ss_pred EEEcCCCCCCCcCEEEccCCcCCCC----chhhccCCCCCCEEEcccCcCc
Q 037792 229 TLDLRINEHSNLRTLLLRGNYLQGP----IPHQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 229 ~L~l~~n~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 275 (558)
...|+|+.+.+.+|.++.. +...+...+.|..|++++|.+.
T Consensus 267 ------~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 267 ------ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ------ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 0357888888888888732 2334566788999999999883
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=5.6e-11 Score=121.08 Aligned_cols=172 Identities=28% Similarity=0.335 Sum_probs=107.4
Q ss_pred EEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCC-CCCEEEccCCccCccCchhhcCCCccCeeeccc
Q 037792 37 YMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF-SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYN 115 (558)
Q Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 115 (558)
.++++.+.+. .....+..+..++.|++.+|.++ .++... .... +|+.|++++|.+.. ++..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhh-hhhhhhccccccccccCC
Confidence 4666666653 22334555566777777777777 565544 3342 67777777777763 335567777777777777
Q ss_pred cccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccC
Q 037792 116 NNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMI 195 (558)
Q Consensus 116 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 195 (558)
|++.. .+......+.|+.|++++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++...+.
T Consensus 173 N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~ 249 (394)
T COG4886 173 NDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPE 249 (394)
T ss_pred chhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccc
Confidence 77763 3333336677777777777777 44544444455777777777543 344556666777777777777665433
Q ss_pred CCcCCCCccEEEccCCcCcc
Q 037792 196 STLNLSSVEHLYLQNNALGG 215 (558)
Q Consensus 196 ~~~~~~~L~~L~l~~n~l~~ 215 (558)
....+++++.|++++|.++.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred hhccccccceeccccccccc
Confidence 33356667777777777763
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=2.1e-12 Score=126.96 Aligned_cols=171 Identities=33% Similarity=0.396 Sum_probs=114.1
Q ss_pred CCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEE
Q 037792 56 MQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVL 135 (558)
Q Consensus 56 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 135 (558)
+..-...|++.|++. ++|..+ ..+..|+.+.+.+|.+. .+|..+.++..|+.|+++.|.++ ..|..+..++ |+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 334456677777776 666665 45566777777777666 45667777777777777777776 4555554444 6777
Q ss_pred EccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcc
Q 037792 136 DISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGG 215 (558)
Q Consensus 136 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~ 215 (558)
-+++|+++ .+|..++..+.|..|+.+.|.+. .+|..++++.+|+.|++..|++...+.....+ .|..||++.|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKIS- 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCcee-
Confidence 77777777 66666777777777777777776 56666777777777777777777666655533 4677777777776
Q ss_pred cchhhhhCCCCCcEEEcCCC
Q 037792 216 SIPNTFFRGSALETLDLRIN 235 (558)
Q Consensus 216 ~~~~~~~~~~~L~~L~l~~n 235 (558)
.+|-.|..++.|++|.|.+|
T Consensus 225 ~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred ecchhhhhhhhheeeeeccC
Confidence 66666666555554444444
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=1e-11 Score=115.47 Aligned_cols=238 Identities=20% Similarity=0.268 Sum_probs=169.5
Q ss_pred CCcCCCccEEEccCCcCCCC----CChhhhhcCCCccEEEccCC---cCCCCCc-------hhhhCCCCCCEEEcccccC
Q 037792 4 TSAQHGLHSLDISRNSFSGK----LPQNMGIVLPKLVYMNISKN---SFEGNIP-------SSIGKMQGLRLLDVSSNNF 69 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~Ls~n---~i~~~~~-------~~~~~l~~L~~L~L~~n~l 69 (558)
...+..++.+++|+|.+.-. +...+. +.++|+..++++- +....+| .++.++++|++|+||+|-+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~-~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLA-SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHh-hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 45678999999999998522 222233 3578888888863 2222333 3456778999999999988
Q ss_pred CccchH---HHHhcCCCCCEEEccCCccCccCch-------------hhcCCCccCeeeccccccccc----cchhhcCC
Q 037792 70 AGELSQ---SLVINCFSLEWLDLSNNNFVGQIFP-------------NYMNLTRLWALYLYNNNFSGK----IKDGLLRS 129 (558)
Q Consensus 70 ~~~~~~---~~~~~l~~L~~L~l~~n~i~~~~~~-------------~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l 129 (558)
....++ .++..+..|++|.|.+|.+...... ...+-++|+.+...+|++... ....|...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 643333 3456788999999999987632211 234567899999999998643 23456777
Q ss_pred CCCCEEEccCCcCCCC----CcccccCCCCCcEEEcccCcCccc----chhhhcCCcccceeeccccccccccCCCc---
Q 037792 130 TELMVLDISNNRLSGH----IPSWMGNFSTLQILSMSKNLLEGN----IPVQFNNLASLQILNISENNLSGSMISTL--- 198 (558)
Q Consensus 130 ~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--- 198 (558)
+.|+.+.++.|.|... ....+..+++|+.|||.+|.++.. +.+.+..+++|+.|++++|.+.......+
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 9999999999988632 234577899999999999988643 34567788899999999999876443332
Q ss_pred ---CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCC
Q 037792 199 ---NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQ 251 (558)
Q Consensus 199 ---~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~ 251 (558)
..|+|+.|.+.+|.++......+..+ .+..+.|..|++++|.+.
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~---------~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAAC---------MAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHH---------HhcchhhHHhcCCccccc
Confidence 57899999999999975443333221 113567777777778773
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=8.3e-11 Score=119.84 Aligned_cols=200 Identities=30% Similarity=0.400 Sum_probs=156.7
Q ss_pred EEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCC-CCCEEEcccccCCccchHHHHhcCCCCCEEEcc
Q 037792 12 SLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQ-GLRLLDVSSNNFAGELSQSLVINCFSLEWLDLS 90 (558)
Q Consensus 12 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 90 (558)
.+++..+.+. .-+..+.. ++.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+ ..+++|+.|+++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~-~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLR-SNISELLE-LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccc-cCchhhhc-ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhh-hccccccccccC
Confidence 5777777774 23333333 578999999999998 5565666664 8999999999998 675444 789999999999
Q ss_pred CCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccc
Q 037792 91 NNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNI 170 (558)
Q Consensus 91 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (558)
+|++.. ++......++|+.|++++|.+. .+|.....+..|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..
T Consensus 172 ~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 172 FNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred Cchhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence 999984 4555558899999999999998 45555455677999999999655 45666788888999999999887 34
Q ss_pred hhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhh
Q 037792 171 PVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTF 221 (558)
Q Consensus 171 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 221 (558)
+..++.+++++.|++++|.++.... .....+++.|+++++.+....+...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhhh
Confidence 6778888999999999999988766 4478899999999999886666544
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.1e-11 Score=114.58 Aligned_cols=211 Identities=22% Similarity=0.228 Sum_probs=154.7
Q ss_pred CcCCCccEEEccCCcCCCCCCh-hhhhcCCCccEEEccCCcCCCCC--chhhhCCCCCCEEEcccccCCccchHHHHhcC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQ-NMGIVLPKLVYMNISKNSFEGNI--PSSIGKMQGLRLLDVSSNNFAGELSQSLVINC 81 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~-~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 81 (558)
+++++|+.+.|.+..+. ..+. .....|++++.||||+|-+.... ..-...+++|+.|+++.|++........-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 46778899999998886 4442 34445999999999999776332 23467899999999999998744444444567
Q ss_pred CCCCEEEccCCccCcc-CchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCC-cccccCCCCCcEE
Q 037792 82 FSLEWLDLSNNNFVGQ-IFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHI-PSWMGNFSTLQIL 159 (558)
Q Consensus 82 ~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 159 (558)
++|+.|.++.|.++-. +......+|+|+.|++..|...........-+..|++|+|++|.+.... -...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 8999999999988732 2224567899999999999533333344455789999999999887432 1346778999999
Q ss_pred EcccCcCcccc-hhh-----hcCCcccceeeccccccccc--cCCCcCCCCccEEEccCCcCccc
Q 037792 160 SMSKNLLEGNI-PVQ-----FNNLASLQILNISENNLSGS--MISTLNLSSVEHLYLQNNALGGS 216 (558)
Q Consensus 160 ~L~~n~l~~~~-~~~-----~~~l~~L~~L~L~~n~i~~~--~~~~~~~~~L~~L~l~~n~l~~~ 216 (558)
+++.+++..+- |+. ...+++|+.|++..|+|.+. ......+++|+.|.+..|.+...
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 99999887432 222 24578999999999999543 22333678899999888888643
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.3e-10 Score=101.46 Aligned_cols=85 Identities=31% Similarity=0.273 Sum_probs=19.9
Q ss_pred CCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCc-ccccCCCCCcEE
Q 037792 81 CFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIP-SWMGNFSTLQIL 159 (558)
Q Consensus 81 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 159 (558)
+.+|+.|++++|.|.. ...+..+++|++|++++|.++.........+++|++|++++|++..... ..+..+++|+.|
T Consensus 41 l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 3344444444444432 1233344444444444444442211111234444444444444432111 223334444444
Q ss_pred EcccCcCc
Q 037792 160 SMSKNLLE 167 (558)
Q Consensus 160 ~L~~n~l~ 167 (558)
++.+|++.
T Consensus 119 ~L~~NPv~ 126 (175)
T PF14580_consen 119 SLEGNPVC 126 (175)
T ss_dssp E-TT-GGG
T ss_pred eccCCccc
Confidence 44444443
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=3.9e-11 Score=109.09 Aligned_cols=130 Identities=28% Similarity=0.314 Sum_probs=91.0
Q ss_pred CCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccch
Q 037792 238 SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNS 317 (558)
Q Consensus 238 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (558)
..|+++|+++|.++ .+.++..-.|+++.|++++|.+.... .+..
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~--------------------------------- 327 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAE--------------------------------- 327 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhh---------------------------------
Confidence 56777888888877 45666777788888888888775110 0111
Q ss_pred hhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhh
Q 037792 318 TVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPES 397 (558)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 397 (558)
+++|+.||+|+|.++ .+..+-..+-+.+.|.|++|.|.. -+.
T Consensus 328 -----------------------------------L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSG 369 (490)
T KOG1259|consen 328 -----------------------------------LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSG 369 (490)
T ss_pred -----------------------------------cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhh
Confidence 677888888888877 444445567778888888888763 245
Q ss_pred hhccccCCeEeCCCCcccccC-chhcccCCCCCEEecCCCCCcCC
Q 037792 398 FSNLKMIESLDLSHNKLNGQI-PPQLTELHSLSTFDVSYNNLSGP 441 (558)
Q Consensus 398 ~~~l~~L~~L~Ls~N~i~~~~-~~~l~~l~~L~~L~l~~N~l~~~ 441 (558)
++.+=+|..||+++|+|.... -..++++|-|+++.+.+|++.+.
T Consensus 370 L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 667778888888888886322 33577788888888888888743
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=3.6e-11 Score=109.37 Aligned_cols=128 Identities=29% Similarity=0.327 Sum_probs=98.8
Q ss_pred CCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEc
Q 037792 82 FSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSM 161 (558)
Q Consensus 82 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 161 (558)
..|+++|+++|.|+ .+..+..-.|.++.|++++|.+..+ +.+..+++|+.||+++|.++ .+..+-..+.+.+.|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 35888999998887 4566777888899999999988743 44778889999999998887 44555566788889999
Q ss_pred ccCcCcccchhhhcCCcccceeeccccccccccC--CCcCCCCccEEEccCCcCcc
Q 037792 162 SKNLLEGNIPVQFNNLASLQILNISENNLSGSMI--STLNLSSVEHLYLQNNALGG 215 (558)
Q Consensus 162 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~~~L~~L~l~~n~l~~ 215 (558)
++|.+.+. ..+..+-+|..|++++|+|..... ...++|.|+++.+.+|.+.+
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99888632 346777788999999998876432 23378899999999998874
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.03 E-value=6.2e-10 Score=121.33 Aligned_cols=130 Identities=29% Similarity=0.324 Sum_probs=99.1
Q ss_pred CcCCCccEEEccCCc--CCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCC
Q 037792 5 SAQHGLHSLDISRNS--FSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF 82 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~--l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 82 (558)
..++.|++|-+..|. +. .++..+|..+|.|++||+++|.--+.+|..++++.+||+|++++..+. .+|..+ .+++
T Consensus 542 ~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l-~~Lk 618 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGL-GNLK 618 (889)
T ss_pred CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHH-HHHH
Confidence 456678898888886 55 788888888999999999988766688999999999999999999998 888887 7889
Q ss_pred CCCEEEccCCccCccCchhhcCCCccCeeeccccccc--cccchhhcCCCCCCEEEc
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFS--GKIKDGLLRSTELMVLDI 137 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L 137 (558)
+|.+|++..+......+.....+++|++|.+...... ......+..+.+|+.+..
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 9999999887765555666677999999988765421 122233344455555544
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.01 E-value=2.1e-10 Score=82.37 Aligned_cols=61 Identities=44% Similarity=0.629 Sum_probs=42.8
Q ss_pred cCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCC
Q 037792 378 QNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNL 438 (558)
Q Consensus 378 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l 438 (558)
|+|++|++++|+++...++.|.++++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4566777777777755556677777777777777777766666777777777777777764
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.99 E-value=6.5e-10 Score=121.18 Aligned_cols=150 Identities=24% Similarity=0.308 Sum_probs=92.4
Q ss_pred CCccEEEccCCcCCCCCchhhhCCCCCCEEEccccc--CCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCe
Q 037792 33 PKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN--FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWA 110 (558)
Q Consensus 33 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 110 (558)
...+.+.+-+|.+. .++.+. .+++|++|-+..|. +. .++..+|..++.|+.||+++|.-.+..|..++.+-+|++
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 45666666666665 222222 23467777777765 34 566666677777777777776655667777777777777
Q ss_pred eeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCc--ccchhhhcCCcccceeecc
Q 037792 111 LYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLE--GNIPVQFNNLASLQILNIS 186 (558)
Q Consensus 111 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~ 186 (558)
|+++++.+. ..|..+.++..|.+|++..+.-....|.....+.+|++|.+...... ...-..+..+.+|+.+...
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 777777776 56777777777777777766655455565566777777777554321 1222333444455555443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=6.6e-10 Score=79.72 Aligned_cols=61 Identities=44% Similarity=0.611 Sum_probs=57.2
Q ss_pred cccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcc
Q 037792 354 ELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 414 (558)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i 414 (558)
++|++|++++|+++...+..|.++++|++|++++|.++...|+.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999977778999999999999999999988889999999999999999986
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.79 E-value=6.1e-10 Score=113.68 Aligned_cols=234 Identities=24% Similarity=0.283 Sum_probs=117.4
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
+..++.+++..|.+.. +-..+..+++|+.|++.+|.+. .+... ...+++|++|++++|.|+. ...+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITK--LEGLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccc--ccchhhccchhhh
Confidence 4455555566666552 2233555666666666666665 33321 1345666666666666654 2334555556666
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCcCCCCCc-ccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecccccc
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIP-SWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL 190 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i 190 (558)
++++|.+.. ...+..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 666666642 2334446666666666666664333 1 34556666666666665522 2233333444445555555
Q ss_pred ccccCCCcCCCC--ccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCC---------CCcCEEEccCCcCCCC---chh
Q 037792 191 SGSMISTLNLSS--VEHLYLQNNALGGSIPNTFFRGSALETLDLRINEH---------SNLRTLLLRGNYLQGP---IPH 256 (558)
Q Consensus 191 ~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~---------~~L~~L~l~~n~l~~~---~~~ 256 (558)
+...... .... |+.+++++|.+.. .+..+..+..+..+++..|.. +.+..+....+.+... ...
T Consensus 221 ~~~~~l~-~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (414)
T KOG0531|consen 221 SKLEGLN-ELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQE 298 (414)
T ss_pred eeccCcc-cchhHHHHHHhcccCcccc-ccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhcc
Confidence 4332211 1122 5666666665542 223333344444444444422 2233334444443311 111
Q ss_pred h-ccCCCCCCEEEcccCcCccc
Q 037792 257 Q-LCHLRKLGIMDISHNRLNGS 277 (558)
Q Consensus 257 ~-~~~l~~L~~L~l~~n~l~~~ 277 (558)
. ....+.++.+.+..|++...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 299 YITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred ccccccccccccccccCccccc
Confidence 1 44456677777777766543
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.71 E-value=1.9e-09 Score=109.96 Aligned_cols=197 Identities=24% Similarity=0.259 Sum_probs=113.9
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCC
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLE 85 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 85 (558)
.+..++.++++.|.+. .+-..+.. +.+|+.|++.+|.|..+ ...+..+++|++|++++|.++ .+.. +..++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~-~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSK-LKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhh-hhhccccc-ccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccc--hhhccchh
Confidence 3456666667777776 43332332 67778888888877743 222666777888888888777 3332 23456677
Q ss_pred EEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCc
Q 037792 86 WLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNL 165 (558)
Q Consensus 86 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 165 (558)
.|++++|.|.. ...+..+++|+.+++++|.+....+.....+.+++.+.+.+|.+.... .+..+..+..+++..|.
T Consensus 144 ~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 144 ELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNK 219 (414)
T ss_pred hheeccCcchh--ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc--chHHHHHHHHhhccccc
Confidence 78888887764 345556777778888887776443310356677777777777766322 12233334444555555
Q ss_pred CcccchhhhcCCc--ccceeeccccccccccCCCcCCCCccEEEccCCcCc
Q 037792 166 LEGNIPVQFNNLA--SLQILNISENNLSGSMISTLNLSSVEHLYLQNNALG 214 (558)
Q Consensus 166 l~~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~ 214 (558)
+....+ +..+. +|+.+++++|++...+...-.+..+..|++.+|++.
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence 542211 12222 266666666666544322224555666666665554
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.66 E-value=5.2e-10 Score=113.33 Aligned_cols=108 Identities=29% Similarity=0.335 Sum_probs=73.7
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
++.++.|+|++|+++.. +.+..+++|++|||++|.+....--...++ .|+.|++++|.++.. ..+.++.+|+.||
T Consensus 186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhccc
Confidence 67777788888887743 267778888888888888773322223333 388888888887733 3466778888888
Q ss_pred cCCCCCcCCCCC--CcccCCCCcccccCCCCCCCC
Q 037792 433 VSYNNLSGPIPD--KEQFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 433 l~~N~l~~~~p~--~~~~~~l~~~~~~~N~~~C~~ 465 (558)
+++|-|++.-.- .+.+..+..+.+.|||..|.+
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 888877753222 445566677778888887765
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.45 E-value=9.7e-09 Score=104.39 Aligned_cols=126 Identities=33% Similarity=0.274 Sum_probs=86.5
Q ss_pred CCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcc
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMS 162 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 162 (558)
+|...++++|.+. ....++.-++.++.|+|++|+++.. +.+..++.|++|||++|.+....--...++. |+.|.+.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4666667777765 4455677778888888888888643 3677788888888888888733222233444 8888888
Q ss_pred cCcCcccchhhhcCCcccceeeccccccccccCCCc--CCCCccEEEccCCcCc
Q 037792 163 KNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL--NLSSVEHLYLQNNALG 214 (558)
Q Consensus 163 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~~~L~~L~l~~n~l~ 214 (558)
+|.++.. ..+.++.+|+.|++++|-+.+...-.+ .+..|+.|+|.+|.+.
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8877632 346777888888888887776433222 5667788888888764
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.3e-08 Score=91.30 Aligned_cols=175 Identities=22% Similarity=0.224 Sum_probs=85.5
Q ss_pred CCCEEEccCCccCccC-chhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCc-CCCC-CcccccCCCCCcEE
Q 037792 83 SLEWLDLSNNNFVGQI-FPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNR-LSGH-IPSWMGNFSTLQIL 159 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L 159 (558)
.|++|||++..|+... ...++.+.+|+.|.+.++.+...+...+++-.+|+.|+++.+. ++.. ..-.+..|..|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3666666665554311 1234556666666666666655555555666666666666543 2211 11124456666666
Q ss_pred EcccCcCcccchh-hhcC-CcccceeeccccccccccCC--Cc--CCCCccEEEccCCc-CcccchhhhhCCCCCcEEEc
Q 037792 160 SMSKNLLEGNIPV-QFNN-LASLQILNISENNLSGSMIS--TL--NLSSVEHLYLQNNA-LGGSIPNTFFRGSALETLDL 232 (558)
Q Consensus 160 ~L~~n~l~~~~~~-~~~~-l~~L~~L~L~~n~i~~~~~~--~~--~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l 232 (558)
+++++.+...... .+.+ -++|+.|+++++.-.-...+ .. .+|+|.+|||++|. ++......+..+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf-------- 337 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF-------- 337 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc--------
Confidence 6666655422111 1111 13566666666532111111 11 56666666666643 333233344443
Q ss_pred CCCCCCCcCEEEccCCcCCCCchhh---ccCCCCCCEEEcccC
Q 037792 233 RINEHSNLRTLLLRGNYLQGPIPHQ---LCHLRKLGIMDISHN 272 (558)
Q Consensus 233 ~~n~~~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n 272 (558)
+.|++|.++.|.. ++|.. +...|.|.+||+-++
T Consensus 338 -----~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 338 -----NYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred -----chheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 3444444444433 23332 345566677776654
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.9e-08 Score=90.67 Aligned_cols=178 Identities=18% Similarity=0.184 Sum_probs=119.2
Q ss_pred CCccEEEccCCcCCCC-CchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCc-cCccCch-hhcCCCccC
Q 037792 33 PKLVYMNISKNSFEGN-IPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNN-FVGQIFP-NYMNLTRLW 109 (558)
Q Consensus 33 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~-~~~~l~~L~ 109 (558)
..|++||||...|+.. +-..++.+.+|+-|.+.++++.+.+...+ ..-.+|+.|+++.+. ++..... -+.+++.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 3588889988877622 22346778888888999988887777666 566788999988753 3322222 467888899
Q ss_pred eeeccccccccccch-hhcC-CCCCCEEEccCCcCC---CCCcccccCCCCCcEEEcccCc-CcccchhhhcCCccccee
Q 037792 110 ALYLYNNNFSGKIKD-GLLR-STELMVLDISNNRLS---GHIPSWMGNFSTLQILSMSKNL-LEGNIPVQFNNLASLQIL 183 (558)
Q Consensus 110 ~L~l~~n~i~~~~~~-~~~~-l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 183 (558)
.|+++.|........ .+.. -++|+.|+++++.-. ..+.-....+|+|.+|||++|. ++......|-.++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 999988877643221 1122 267888888887432 1222233568999999998875 333344556778899999
Q ss_pred eccccccccccCCCc----CCCCccEEEccCCcC
Q 037792 184 NISENNLSGSMISTL----NLSSVEHLYLQNNAL 213 (558)
Q Consensus 184 ~L~~n~i~~~~~~~~----~~~~L~~L~l~~n~l 213 (558)
.++.|..- ++..+ ..|+|.+|+..++--
T Consensus 344 SlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 344 SLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 99988532 22222 778999999887644
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=1.9e-07 Score=85.45 Aligned_cols=205 Identities=15% Similarity=0.166 Sum_probs=108.7
Q ss_pred CccEEEccCCcCCCCCC--hhhhhcCCCccEEEccCCcCCC--CCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 9 GLHSLDISRNSFSGKLP--QNMGIVLPKLVYMNISKNSFEG--NIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p--~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
.++.+.+.++.+. ..- ..+...+.+++.+||.+|.|+. .+..-+.++|.|++|+++.|.+...|...- ....+|
T Consensus 46 a~ellvln~~~id-~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVLNGSIID-NEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNL 123 (418)
T ss_pred chhhheecCCCCC-cchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccce
Confidence 3334445555543 221 2344557778888888888762 223345678888888888887764433221 235677
Q ss_pred CEEEccCCccCcc-CchhhcCCCccCeeeccccccccccc--hhhcC-CCCCCEEEccCCcCCC--CCcccccCCCCCcE
Q 037792 85 EWLDLSNNNFVGQ-IFPNYMNLTRLWALYLYNNNFSGKIK--DGLLR-STELMVLDISNNRLSG--HIPSWMGNFSTLQI 158 (558)
Q Consensus 85 ~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~~~-l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~ 158 (558)
+.|-|.+..+.-. ....+..+|.++.|+++.|....... ..... -+.++++....|.... ..-..-.-+|++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 7777777665421 12245667777777777775432111 11111 1244455544443220 00011122456666
Q ss_pred EEcccCcCccc-chhhhcCCcccceeeccccccccccCC-Cc-CCCCccEEEccCCcCcc
Q 037792 159 LSMSKNLLEGN-IPVQFNNLASLQILNISENNLSGSMIS-TL-NLSSVEHLYLQNNALGG 215 (558)
Q Consensus 159 L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~-~~~~L~~L~l~~n~l~~ 215 (558)
+.+..|.+.+. ..+.+..++.+..|+|+.++|..-..- .. +++.|..|.++++.+.+
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 66666655432 223445556666777777666532111 11 56777777777776653
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.25 E-value=7.7e-07 Score=80.52 Aligned_cols=237 Identities=20% Similarity=0.196 Sum_probs=132.6
Q ss_pred CCCccEEEccCCcCCCCCc----hhhhCCCCCCEEEcccccC---CccchHH------HHhcCCCCCEEEccCCccCccC
Q 037792 32 LPKLVYMNISKNSFEGNIP----SSIGKMQGLRLLDVSSNNF---AGELSQS------LVINCFSLEWLDLSNNNFVGQI 98 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l---~~~~~~~------~~~~l~~L~~L~l~~n~i~~~~ 98 (558)
+..+..++||+|.|...-. ..+.+-.+|+..++++-.. .+.++.. ...+|++|+..++|.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 6677888888887764322 3345557777777765422 1122221 2246778888888888776555
Q ss_pred chh----hcCCCccCeeeccccccccccchh-------------hcCCCCCCEEEccCCcCCCCCcc-----cccCCCCC
Q 037792 99 FPN----YMNLTRLWALYLYNNNFSGKIKDG-------------LLRSTELMVLDISNNRLSGHIPS-----WMGNFSTL 156 (558)
Q Consensus 99 ~~~----~~~l~~L~~L~l~~n~i~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L 156 (558)
|+. +++-+.|.+|.+++|.+.-....- ..+-|.|+......|++.. .|. .+.....|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCc
Confidence 543 456677888888888765221111 1234678888888887762 222 22223567
Q ss_pred cEEEcccCcCcccch-----hhhcCCcccceeeccccccccccCCCc-----CCCCccEEEccCCcCcccchhhhh----
Q 037792 157 QILSMSKNLLEGNIP-----VQFNNLASLQILNISENNLSGSMISTL-----NLSSVEHLYLQNNALGGSIPNTFF---- 222 (558)
Q Consensus 157 ~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~i~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~~~~~---- 222 (558)
+.+.+..|.|..... ..+..+.+|+.|++..|-++....... .++.|+.|.+.+|-++.....++.
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 788888887652211 123445678888888876654322211 456678888887777654443321
Q ss_pred --CCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCc
Q 037792 223 --RGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 223 --~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 275 (558)
..++|..|...+|....=..++.+-+.+. -..+|-|..+.+.+|.+.
T Consensus 268 e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e------~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 268 EKFVPNLMPLPGDYNERRGGIILDISLNEFE------QDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhcCCCccccccchhhhcCceeeeechhhhh------hcccHHHHHHHHccCcch
Confidence 12344444444432222222222211111 134566777788888886
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=3e-07 Score=84.20 Aligned_cols=39 Identities=33% Similarity=0.281 Sum_probs=17.2
Q ss_pred CCccCeeecccccccc--ccchhhcCCCCCCEEEccCCcCC
Q 037792 105 LTRLWALYLYNNNFSG--KIKDGLLRSTELMVLDISNNRLS 143 (558)
Q Consensus 105 l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~ 143 (558)
.+.++.++|.+|.|+. .+...+.++|.|+.|+++.|.+.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 3444555555555431 11222334455555555555444
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=2e-07 Score=75.51 Aligned_cols=83 Identities=27% Similarity=0.420 Sum_probs=58.1
Q ss_pred cccCEEEccCCCCCCCCCcccc-CccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 354 ELMAGLDLSNNELTGDIPSEIG-DLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
..|+..++++|.+.. .|..|. ..+.++.|++++|.|+ .+|+.+..++.|+.|+++.|.+. ..|..+..+.+|-.|+
T Consensus 53 ~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 456667777777773 343443 4557778888888887 56666777888888888888877 4556666677777777
Q ss_pred cCCCCCc
Q 037792 433 VSYNNLS 439 (558)
Q Consensus 433 l~~N~l~ 439 (558)
..+|.+.
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 7777776
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.01 E-value=9e-06 Score=70.65 Aligned_cols=105 Identities=21% Similarity=0.159 Sum_probs=53.8
Q ss_pred CCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccc-cchhhcCCCCCCEEE
Q 037792 58 GLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK-IKDGLLRSTELMVLD 136 (558)
Q Consensus 58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~ 136 (558)
+...+||++|.+. .++. +..++.|.+|.+.+|+|+.+.|.--..+++|+.|.+.+|.+... ....+..++.|++|.
T Consensus 43 ~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3445555555544 2221 23445555555555555544444334445555555555555421 112344566677777
Q ss_pred ccCCcCCCCCc---ccccCCCCCcEEEcccCc
Q 037792 137 ISNNRLSGHIP---SWMGNFSTLQILSMSKNL 165 (558)
Q Consensus 137 L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~ 165 (558)
+-+|.++..-- ..+..+|+|+.||...-.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 76666653211 245567777777776543
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=1.3e-06 Score=70.76 Aligned_cols=134 Identities=20% Similarity=0.213 Sum_probs=94.9
Q ss_pred CCccEEEccCCcCCCCCChhhhh--cCCCccEEEccCCcCCCCCchhhh-CCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGI--VLPKLVYMNISKNSFEGNIPSSIG-KMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
+.+..+||+++.+- .++..... ...+|+..+|++|.+. ..|..|. +.+.++.|++++|.+. .+|.++ ..++.|
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~-Aam~aL 102 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEEL-AAMPAL 102 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHH-hhhHHh
Confidence 34567888888875 66665443 2457778899999988 4555554 4568899999999998 888884 789999
Q ss_pred CEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCc
Q 037792 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIP 147 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 147 (558)
+.|+++.|.+. ..|..+..+.++-.|+..+|....+..+ +....+.-..++.++.+.+.-+
T Consensus 103 r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d-l~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 103 RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD-LFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred hhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH-HhccccHHHHHhcCCcccccCc
Confidence 99999999987 5677777788999999888887644444 3222333333445555554444
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=3.1e-06 Score=76.71 Aligned_cols=183 Identities=19% Similarity=0.212 Sum_probs=103.9
Q ss_pred CCCccEEEccCCcCCCCCch----hhhCCCCCCEEEcccccCCc----cchHHH--------HhcCCCCCEEEccCCccC
Q 037792 32 LPKLVYMNISKNSFEGNIPS----SIGKMQGLRLLDVSSNNFAG----ELSQSL--------VINCFSLEWLDLSNNNFV 95 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~----~~~~~~--------~~~l~~L~~L~l~~n~i~ 95 (558)
||+|+..+||.|.+....|. .+++-..|.+|.+++|.+-. .+...+ ..+-+.|+......|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 67777777777776544443 34455667777777776531 111111 123456777777777765
Q ss_pred ccCc----hhhcCCCccCeeeccccccccc-----cchhhcCCCCCCEEEccCCcCCCCCc----ccccCCCCCcEEEcc
Q 037792 96 GQIF----PNYMNLTRLWALYLYNNNFSGK-----IKDGLLRSTELMVLDISNNRLSGHIP----SWMGNFSTLQILSMS 162 (558)
Q Consensus 96 ~~~~----~~~~~l~~L~~L~l~~n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~ 162 (558)
.-.. ..+..-..|+++.+..|.|.-. ....+..+.+|+.||+..|-++.... ..+...+.|+.|.+.
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 3221 1233345677777777776422 11223455777888887777764332 233445667777777
Q ss_pred cCcCcccchhhh------cCCcccceeeccccccccccCCC-----c---CCCCccEEEccCCcCc
Q 037792 163 KNLLEGNIPVQF------NNLASLQILNISENNLSGSMIST-----L---NLSSVEHLYLQNNALG 214 (558)
Q Consensus 163 ~n~l~~~~~~~~------~~l~~L~~L~L~~n~i~~~~~~~-----~---~~~~L~~L~l~~n~l~ 214 (558)
.|-++.....++ ...++|..|...+|.+.+..... + .+|-|..|.+.+|++.
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 776653332222 23467777777777654322111 1 5677777778888775
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=6.8e-06 Score=53.83 Aligned_cols=36 Identities=39% Similarity=0.681 Sum_probs=15.9
Q ss_pred CCCeeeccCCcCCccchhhhhccccCCeEeCCCCccc
Q 037792 379 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 415 (558)
Q Consensus 379 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~ 415 (558)
+|++|++++|+|+ .+|..++++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444555555554 23333444555555555555444
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.96 E-value=1.2e-05 Score=67.53 Aligned_cols=126 Identities=15% Similarity=0.177 Sum_probs=45.5
Q ss_pred CChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhc
Q 037792 24 LPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM 103 (558)
Q Consensus 24 ~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 103 (558)
++...|..+++|+.+.+.. .+..+...+|.++.+|+.+.+.++ +. .++...|.++++++.+.+.+ .+.......|.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccc
Confidence 3444444455555555553 344344445555555555555543 33 44555555555555555543 22222233444
Q ss_pred CCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 037792 104 NLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTL 156 (558)
Q Consensus 104 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 156 (558)
.+++|+.+++..+ +.......|.+. +|+.+.+.. .+.......|.++++|
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 5555555555443 333333444443 555555443 2333334444444443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.6e-05 Score=52.02 Aligned_cols=36 Identities=22% Similarity=0.513 Sum_probs=15.2
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCC
Q 037792 34 KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFA 70 (558)
Q Consensus 34 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 70 (558)
+|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 22333444444444444444444
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.88 E-value=2.4e-05 Score=65.78 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=75.5
Q ss_pred CCCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCC
Q 037792 3 LTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF 82 (558)
Q Consensus 3 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 82 (558)
.|..+++|+.+.+.. .+. .++...|.++++|+.+.+.++ +......+|.++++++.+.+.+ .+. .++...|..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 478899999999985 677 899999988999999999885 7666677899998999999976 555 67777888899
Q ss_pred CCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCC
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELM 133 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 133 (558)
+|+.+.+..+ +.......|.+. +|+.+.+.. .+..+....|.++++|+
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 9999999765 554555678887 999999876 45556667788777764
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=7.8e-06 Score=87.43 Aligned_cols=152 Identities=24% Similarity=0.267 Sum_probs=92.7
Q ss_pred CCccEEEccCCcC-CCCCchhhh-CCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCe
Q 037792 33 PKLVYMNISKNSF-EGNIPSSIG-KMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWA 110 (558)
Q Consensus 33 ~~L~~L~Ls~n~i-~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 110 (558)
.+|++||+++... ....|..++ .+|.|+.|.+++-.+...--..+..++++|..||+|+++++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4677788777543 222233333 4677888888776664332344556778888888888777643 66777888888
Q ss_pred eecccccccc-ccchhhcCCCCCCEEEccCCcCCCCC--c----ccccCCCCCcEEEcccCcCcccchhhh-cCCcccce
Q 037792 111 LYLYNNNFSG-KIKDGLLRSTELMVLDISNNRLSGHI--P----SWMGNFSTLQILSMSKNLLEGNIPVQF-NNLASLQI 182 (558)
Q Consensus 111 L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~--~----~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~ 182 (558)
|.+.+-.+.. ..-..+..+++|+.||+|........ . +.-..+|+|+.||.+++.+....-+.+ ..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8777766653 22345667788888888876544211 0 111347888888888887765443333 23345555
Q ss_pred eecc
Q 037792 183 LNIS 186 (558)
Q Consensus 183 L~L~ 186 (558)
+..-
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 5443
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.78 E-value=3.9e-05 Score=66.78 Aligned_cols=107 Identities=22% Similarity=0.215 Sum_probs=65.9
Q ss_pred CCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCC-cccccCCCCCcEE
Q 037792 81 CFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHI-PSWMGNFSTLQIL 159 (558)
Q Consensus 81 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 159 (558)
..+...+||++|.+.. ...|..++.|.+|.+++|.|+.+.|.--.-+++|+.|.+.+|.+.... -..+..+|.|++|
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3455667777776643 345666777777777777777666654445567777777777665211 1234566777777
Q ss_pred EcccCcCcccc---hhhhcCCcccceeeccccc
Q 037792 160 SMSKNLLEGNI---PVQFNNLASLQILNISENN 189 (558)
Q Consensus 160 ~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~ 189 (558)
.+-+|+++..- ...+..+|+|+.||..+-.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 77777665211 1224566777777766543
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=0.00014 Score=71.90 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=14.4
Q ss_pred CCcEEEcccCcCcccchhhhcCCcccceeecccc
Q 037792 155 TLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188 (558)
Q Consensus 155 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 188 (558)
+|++|++++|... ..|..+. .+|+.|.++.+
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 4555555555543 2232221 35555555544
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=3.6e-05 Score=82.46 Aligned_cols=149 Identities=19% Similarity=0.238 Sum_probs=104.6
Q ss_pred CCCCEEEcccccC-CccchHHHHhcCCCCCEEEccCCccCc-cCchhhcCCCccCeeeccccccccccchhhcCCCCCCE
Q 037792 57 QGLRLLDVSSNNF-AGELSQSLVINCFSLEWLDLSNNNFVG-QIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMV 134 (558)
Q Consensus 57 ~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 134 (558)
.+|++|++++... ....+..+..-+|.|+.|.+++-.+.. .......++++|..||+++++++.. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 6799999988654 335666777789999999998866543 2334567899999999999999744 67888999999
Q ss_pred EEccCCcCCC-CCcccccCCCCCcEEEcccCcCcccc------hhhhcCCcccceeeccccccccccCCCc--CCCCccE
Q 037792 135 LDISNNRLSG-HIPSWMGNFSTLQILSMSKNLLEGNI------PVQFNNLASLQILNISENNLSGSMISTL--NLSSVEH 205 (558)
Q Consensus 135 L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~~~L~~ 205 (558)
|.+.+=.+.. ..-..+.++++|+.||+|..+..... -+.-..+|+|+.||.++..+.+.....+ .-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 9888766653 22234567899999999987654221 1112457899999999887765433332 3344544
Q ss_pred EE
Q 037792 206 LY 207 (558)
Q Consensus 206 L~ 207 (558)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 44
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.55 E-value=9.6e-06 Score=78.06 Aligned_cols=264 Identities=18% Similarity=0.135 Sum_probs=141.1
Q ss_pred CccEEEccCCcCCCCCC-hhhhhcCCCccEEEccCCc-CCCCCchhh-hCCCCCCEEEcccc-cCCccchHHHHhcCCCC
Q 037792 9 GLHSLDISRNSFSGKLP-QNMGIVLPKLVYMNISKNS-FEGNIPSSI-GKMQGLRLLDVSSN-NFAGELSQSLVINCFSL 84 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p-~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L 84 (558)
.|+.|.+++..-.+.-+ ..+...+|++++|.+.++. +++..-..+ ..+++|++|++..| .++...-..+...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46667777665332222 2334468888888887765 232211222 45778888888874 44544444455678888
Q ss_pred CEEEccCCc-cCccCc-hhhcCCCccCeeeccccccccccchhh----cCCCCCCEEEccCCc-CCCCCc-ccccCCCCC
Q 037792 85 EWLDLSNNN-FVGQIF-PNYMNLTRLWALYLYNNNFSGKIKDGL----LRSTELMVLDISNNR-LSGHIP-SWMGNFSTL 156 (558)
Q Consensus 85 ~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~----~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L 156 (558)
++++++.+. |.+... .-+.++..++.+.+.+|.= .....+ .....+.++++..|. +++..- ..-.++..|
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e--~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE--LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccccc--ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 888887764 332111 2234555566665554321 111111 223445555554443 221110 111235566
Q ss_pred cEEEcccCcC-cccchhhh-cCCcccceeecccccc-ccccCCCc--CCCCccEEEccCCcCccc--chhhhhCCCCCcE
Q 037792 157 QILSMSKNLL-EGNIPVQF-NNLASLQILNISENNL-SGSMISTL--NLSSVEHLYLQNNALGGS--IPNTFFRGSALET 229 (558)
Q Consensus 157 ~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~i-~~~~~~~~--~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~ 229 (558)
+.|+.+++.- ++..-.++ .+.++|+.|.++.|+- +....... +.+.|+.+++.++..... +...-..++.|+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 7777666532 22222222 3456777777776652 22222222 566677777766644211 1222234566666
Q ss_pred EEcCCC----------------CCCCcCEEEccCCcCC-CCchhhccCCCCCCEEEcccCcC
Q 037792 230 LDLRIN----------------EHSNLRTLLLRGNYLQ-GPIPHQLCHLRKLGIMDISHNRL 274 (558)
Q Consensus 230 L~l~~n----------------~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l 274 (558)
+.++.+ ....++.+.++++... +..-+.+..+++|+.+++-+++-
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 666544 4567888888888654 34455677888899988887753
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.49 E-value=0.00037 Score=68.97 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=19.6
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCc
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNF 389 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 389 (558)
.++|+.|++++|... ..|..+. .+|+.|.++.|.
T Consensus 155 PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 155 SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 356777777776654 3333332 466677766653
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.48 E-value=1.4e-05 Score=77.05 Aligned_cols=87 Identities=22% Similarity=0.145 Sum_probs=41.2
Q ss_pred hcccCEEEccCCCCCCCC--CccccCccCCCeeeccCCcCC-ccc----hhhhhccccCCeEeCCCCccc-ccCchhccc
Q 037792 353 LELMAGLDLSNNELTGDI--PSEIGDLQNIHGLNLSHNFLS-GSI----PESFSNLKMIESLDLSHNKLN-GQIPPQLTE 424 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~-~~~----~~~~~~l~~L~~L~Ls~N~i~-~~~~~~l~~ 424 (558)
.+.|+.+++..+...... ...-.+++.|+.|.+++|... +.. ...-..+..|+.+.|+++... ...-..+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 344555555555433111 111134566666666666532 110 111133456666666666543 222333455
Q ss_pred CCCCCEEecCCCCCc
Q 037792 425 LHSLSTFDVSYNNLS 439 (558)
Q Consensus 425 l~~L~~L~l~~N~l~ 439 (558)
++.|+.+++-.++-.
T Consensus 425 c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 425 CRNLERIELIDCQDV 439 (483)
T ss_pred Ccccceeeeechhhh
Confidence 566666666555443
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.35 E-value=4.4e-05 Score=80.10 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=41.2
Q ss_pred CCCCccEEEccCCcCcccc-hhhhhCCCCC-cEEEcCCCCCCCcCEEEccCCcCCC-CchhhccC-CCCCCEEEcccCcC
Q 037792 199 NLSSVEHLYLQNNALGGSI-PNTFFRGSAL-ETLDLRINEHSNLRTLLLRGNYLQG-PIPHQLCH-LRKLGIMDISHNRL 274 (558)
Q Consensus 199 ~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L-~~L~l~~n~~~~L~~L~l~~n~l~~-~~~~~~~~-l~~L~~L~l~~n~l 274 (558)
.++.++.+.+..+...... ...+.+++.| ..+.+.......++.|+++.+.... ..-..... +.+++.+++.++..
T Consensus 360 ~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 360 SCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 5677777777776644333 2455666666 3443333334447777777765432 11112222 55666677766543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=4.5e-05 Score=69.62 Aligned_cols=98 Identities=26% Similarity=0.250 Sum_probs=44.7
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccC-chhhcCCCccCeee
Q 037792 34 KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQI-FPNYMNLTRLWALY 112 (558)
Q Consensus 34 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~ 112 (558)
+.+.|++=++.+.++ ....+|+.|++|.|+-|+++ .+.+ +..|++|++|+|..|.|.+.- ..-+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 344444444444422 22344555555555555554 2222 234555555555555554311 12345555555555
Q ss_pred ccccccccccch-----hhcCCCCCCEEE
Q 037792 113 LYNNNFSGKIKD-----GLLRSTELMVLD 136 (558)
Q Consensus 113 l~~n~i~~~~~~-----~~~~l~~L~~L~ 136 (558)
|..|...+..+. .+.-+|+|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 555554433221 234456666555
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.97 E-value=0.00025 Score=74.39 Aligned_cols=135 Identities=20% Similarity=0.113 Sum_probs=83.4
Q ss_pred CcCCCccEEEccCCcCCCCC-ChhhhhcCCCccEEEccCC-cCCCCCc----hhhhCCCCCCEEEccccc-CCccchHHH
Q 037792 5 SAQHGLHSLDISRNSFSGKL-PQNMGIVLPKLVYMNISKN-SFEGNIP----SSIGKMQGLRLLDVSSNN-FAGELSQSL 77 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~-p~~~~~~l~~L~~L~Ls~n-~i~~~~~----~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 77 (558)
..++.|+.+.+....-.... -..+...+++|+.|+++++ ......+ .....+++|+.|+++.+. +++..-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 34678888888876432121 1234445889999999873 2111111 234556889999999888 664444555
Q ss_pred HhcCCCCCEEEccCCc-cCccCch-hhcCCCccCeeecccccccc--ccchhhcCCCCCCEEEccC
Q 037792 78 VINCFSLEWLDLSNNN-FVGQIFP-NYMNLTRLWALYLYNNNFSG--KIKDGLLRSTELMVLDISN 139 (558)
Q Consensus 78 ~~~l~~L~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~ 139 (558)
...+++|++|.+.++. +++.... ....++.|++|+++.+.... ........+++++.|.+..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 5568899999987776 5543333 34568889999999876531 1222234466666655443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=7.1e-05 Score=68.37 Aligned_cols=100 Identities=19% Similarity=0.177 Sum_probs=56.0
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchH-HHHhcCCCCC
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQ-SLVINCFSLE 85 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~ 85 (558)
+.+.+.|++.++.+. .| ++...++.|++|.||-|+|+.. ..+..|++|++|.|..|.|. .+.+ ....++++|+
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 335556666666665 33 3444466666666666666643 23566666666666666665 2322 3345666666
Q ss_pred EEEccCCccCccCch-----hhcCCCccCeee
Q 037792 86 WLDLSNNNFVGQIFP-----NYMNLTRLWALY 112 (558)
Q Consensus 86 ~L~l~~n~i~~~~~~-----~~~~l~~L~~L~ 112 (558)
.|.|..|.-.+..+. .+.-+|+|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666666655443322 244556666554
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.86 E-value=0.00052 Score=62.56 Aligned_cols=108 Identities=20% Similarity=0.223 Sum_probs=75.8
Q ss_pred cCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccc--cCCccchHHHHhcCCCCCEEEccCCccCc-cCchhhcCCCc
Q 037792 31 VLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSN--NFAGELSQSLVINCFSLEWLDLSNNNFVG-QIFPNYMNLTR 107 (558)
Q Consensus 31 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~ 107 (558)
.+..|+.|++.+..++.. ..+-.+++|+.|.++.| ++.+.++.-+ ..+++|+++++++|+|.. .....+..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcc
Confidence 366788888877777633 35677889999999999 5555555444 456999999999999873 12234567778
Q ss_pred cCeeecccccccccc---chhhcCCCCCCEEEccCCc
Q 037792 108 LWALYLYNNNFSGKI---KDGLLRSTELMVLDISNNR 141 (558)
Q Consensus 108 L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~n~ 141 (558)
|..|++.+|..+... ...|.-+++|++|+-....
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 889999998876421 1245556888888765443
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.58 E-value=0.00093 Score=60.94 Aligned_cols=86 Identities=23% Similarity=0.276 Sum_probs=38.3
Q ss_pred hcCCCccCeeecccc--ccccccchhhcCCCCCCEEEccCCcCCCCCccc---ccCCCCCcEEEcccCcCcc---cchhh
Q 037792 102 YMNLTRLWALYLYNN--NFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW---MGNFSTLQILSMSKNLLEG---NIPVQ 173 (558)
Q Consensus 102 ~~~l~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~---~~~~~ 173 (558)
+-.+++|+.|.++.| ++.+........+++|+++++++|++.. +.. +..+.+|..|++.+|..+. .-...
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKV 138 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHH
Confidence 334444555555555 3333333333334555555555555441 111 2233445555555554332 11223
Q ss_pred hcCCcccceeeccccc
Q 037792 174 FNNLASLQILNISENN 189 (558)
Q Consensus 174 ~~~l~~L~~L~L~~n~ 189 (558)
|.-+++|+.|+-....
T Consensus 139 f~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDVD 154 (260)
T ss_pred HHHhhhhccccccccC
Confidence 4555666666544433
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.55 E-value=0.00019 Score=73.67 Aligned_cols=13 Identities=38% Similarity=0.503 Sum_probs=8.2
Q ss_pred ccCEEEccCCCCC
Q 037792 355 LMAGLDLSNNELT 367 (558)
Q Consensus 355 ~L~~L~Ls~n~l~ 367 (558)
.+..++++.|.++
T Consensus 433 ~~~~~~l~~~~~~ 445 (478)
T KOG4308|consen 433 SLKALRLSRNPIT 445 (478)
T ss_pred cchhhhhccChhh
Confidence 4556666666665
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.34 E-value=0.0072 Score=32.76 Aligned_cols=12 Identities=42% Similarity=0.457 Sum_probs=5.6
Q ss_pred CCeeeccCCcCC
Q 037792 380 IHGLNLSHNFLS 391 (558)
Q Consensus 380 L~~L~Ls~N~l~ 391 (558)
|++|+|++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.76 E-value=0.013 Score=31.73 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=12.8
Q ss_pred cCCeEeCCCCcccccCchhccc
Q 037792 403 MIESLDLSHNKLNGQIPPQLTE 424 (558)
Q Consensus 403 ~L~~L~Ls~N~i~~~~~~~l~~ 424 (558)
+|++||+++|+++ .+|..|.+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4667777777776 45544543
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.98 E-value=0.064 Score=26.88 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=5.6
Q ss_pred CccEEEccCCcCC
Q 037792 9 GLHSLDISRNSFS 21 (558)
Q Consensus 9 ~L~~L~l~~n~l~ 21 (558)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.91 E-value=0.0051 Score=55.08 Aligned_cols=84 Identities=18% Similarity=0.204 Sum_probs=74.0
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
.+..+.||++.|++. -.-..|+-++.|..|+++.|.+. ..|+.++.+..+..+++.+|..+ ..|.++...+++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 567888999999987 44456888899999999999998 78889999999999999999998 6788899999999999
Q ss_pred cCCCCCc
Q 037792 433 VSYNNLS 439 (558)
Q Consensus 433 l~~N~l~ 439 (558)
+.+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999975
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.28 E-value=0.14 Score=28.92 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=15.5
Q ss_pred CCCccEEEccCCcCCCCCChhhhh
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGI 30 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~ 30 (558)
+++|++|++++|.+. .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356777777777777 67766653
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.28 E-value=0.14 Score=28.92 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=15.5
Q ss_pred CCCccEEEccCCcCCCCCChhhhh
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGI 30 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~ 30 (558)
+++|++|++++|.+. .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356777777777777 67766653
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.84 E-value=0.0053 Score=63.18 Aligned_cols=185 Identities=22% Similarity=0.253 Sum_probs=101.3
Q ss_pred ccEEEccCCcCCCCCChhhhh---cCCCccEEEccCCcCCCCCchh----hhCC-CCCCEEEcccccCCcc----chHHH
Q 037792 10 LHSLDISRNSFSGKLPQNMGI---VLPKLVYMNISKNSFEGNIPSS----IGKM-QGLRLLDVSSNNFAGE----LSQSL 77 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~---~l~~L~~L~Ls~n~i~~~~~~~----~~~l-~~L~~L~L~~n~l~~~----~~~~~ 77 (558)
+..+.+.+|.+.......+.. ..++|..|++++|.+.+..... +... ..+++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 788899999987544444433 3578999999999987433222 2222 4577888888888743 33333
Q ss_pred HhcCCCCCEEEccCCccCcc----Cchhhc----CCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCccc
Q 037792 78 VINCFSLEWLDLSNNNFVGQ----IFPNYM----NLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW 149 (558)
Q Consensus 78 ~~~l~~L~~L~l~~n~i~~~----~~~~~~----~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 149 (558)
.....++.++++.|.+... .+..+. ...++++|++++|.++..... .....
T Consensus 169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~--------------------~l~~~ 227 (478)
T KOG4308|consen 169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA--------------------LLDEV 227 (478)
T ss_pred -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH--------------------HHHHH
Confidence 2366788888888876421 111222 244455555555554421110 00112
Q ss_pred ccCCCC-CcEEEcccCcCccc----chhhhcCC-cccceeeccccccccccCCCc-----CCCCccEEEccCCcCcc
Q 037792 150 MGNFST-LQILSMSKNLLEGN----IPVQFNNL-ASLQILNISENNLSGSMISTL-----NLSSVEHLYLQNNALGG 215 (558)
Q Consensus 150 ~~~l~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~-----~~~~L~~L~l~~n~l~~ 215 (558)
+...+. +..+++..|.+.+. ....+..+ ..++++++..|.++....... .++.++.+.+++|.+..
T Consensus 228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 222232 34455555554322 12223333 456667777776665433222 45567777777777654
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.47 E-value=0.15 Score=28.75 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=7.9
Q ss_pred ccCCeEeCCCCccccc
Q 037792 402 KMIESLDLSHNKLNGQ 417 (558)
Q Consensus 402 ~~L~~L~Ls~N~i~~~ 417 (558)
++|++|+|++|+|...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3455555555555533
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.47 E-value=0.15 Score=28.75 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=7.9
Q ss_pred ccCCeEeCCCCccccc
Q 037792 402 KMIESLDLSHNKLNGQ 417 (558)
Q Consensus 402 ~~L~~L~Ls~N~i~~~ 417 (558)
++|++|+|++|+|...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3455555555555533
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.09 E-value=0.079 Score=46.74 Aligned_cols=84 Identities=18% Similarity=0.130 Sum_probs=51.6
Q ss_pred ccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCC-cCCCCchh
Q 037792 179 SLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGN-YLQGPIPH 256 (558)
Q Consensus 179 ~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n-~l~~~~~~ 256 (558)
.++.++-++..|......-+ .++.++.|.+.+|.-.+... +..+. + ..++|+.|++++| .|++..-.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~--L~~l~--------~-~~~~L~~L~lsgC~rIT~~GL~ 170 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC--LERLG--------G-LAPSLQDLDLSGCPRITDGGLA 170 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH--HHHhc--------c-cccchheeeccCCCeechhHHH
Confidence 45666666666655444333 56666666666664332211 11110 0 3578888888877 67766677
Q ss_pred hccCCCCCCEEEcccCc
Q 037792 257 QLCHLRKLGIMDISHNR 273 (558)
Q Consensus 257 ~~~~l~~L~~L~l~~n~ 273 (558)
.+..+++|+.|.+.+=+
T Consensus 171 ~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 171 CLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHhhhhHHHHhcCch
Confidence 78888999998887643
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.82 E-value=0.11 Score=28.73 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=6.4
Q ss_pred cCCCeeeccCCcCCc
Q 037792 378 QNIHGLNLSHNFLSG 392 (558)
Q Consensus 378 ~~L~~L~Ls~N~l~~ 392 (558)
++|++|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344555555555443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.73 E-value=0.019 Score=51.57 Aligned_cols=88 Identities=23% Similarity=0.281 Sum_probs=71.5
Q ss_pred ccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCC
Q 037792 372 SEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTF 451 (558)
Q Consensus 372 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l 451 (558)
..+......+.||++.|++. -....|+-++.|..||++.|.|. ..|..+..+..+..+++.+|..+..+-+.......
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence 45667788999999999987 45567888999999999999998 67888888889999999999998655555556667
Q ss_pred CcccccCCCC
Q 037792 452 DESSYRGNLF 461 (558)
Q Consensus 452 ~~~~~~~N~~ 461 (558)
...+..+||+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 7777777764
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.03 E-value=0.17 Score=44.77 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=37.8
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccch-HHHHhcCCCCCEEEccCC-ccCccCchhhcCCCccCee
Q 037792 34 KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELS-QSLVINCFSLEWLDLSNN-NFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 34 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L 111 (558)
.++.+|-++..|..+.-+.+.+++.++.|.+.++.-.+..- ..+..-.++|+.|++++| +|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34555555555554444445555555555555554321111 111122345555555544 2443333444455555555
Q ss_pred eccc
Q 037792 112 YLYN 115 (558)
Q Consensus 112 ~l~~ 115 (558)
.+++
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 4443
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=83.57 E-value=0.72 Score=56.20 Aligned_cols=39 Identities=26% Similarity=0.198 Sum_probs=35.0
Q ss_pred eCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCc
Q 037792 408 DLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKE 446 (558)
Q Consensus 408 ~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~ 446 (558)
||++|+|+.+.+..|..+++|+.|+|++|++.|.|...+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~W 39 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLAR 39 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHH
Confidence 689999998888899999999999999999999888644
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=80.87 E-value=7.3 Score=39.36 Aligned_cols=240 Identities=17% Similarity=0.099 Sum_probs=109.2
Q ss_pred CCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHH--hcCCCCCEEEccCCccCccCchhhc---CCCc
Q 037792 33 PKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLV--INCFSLEWLDLSNNNFVGQIFPNYM---NLTR 107 (558)
Q Consensus 33 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~~---~l~~ 107 (558)
+.+++++++.|.+....|-.+..-.. -+.++.+..+...-..+. ..-..+.+++++.|.....++..+. .-..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 44566666666665444433322111 144444444322111110 1112466677777766554444322 2223
Q ss_pred cCeeeccccccccc---cchhhcCCCCCCEEEccCCcCCC----CC----cccccCCCCCcEEEcccCcCcccchhh-hc
Q 037792 108 LWALYLYNNNFSGK---IKDGLLRSTELMVLDISNNRLSG----HI----PSWMGNFSTLQILSMSKNLLEGNIPVQ-FN 175 (558)
Q Consensus 108 L~~L~l~~n~i~~~---~~~~~~~l~~L~~L~L~~n~l~~----~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~ 175 (558)
++.++.+...+.-. .+-..+.-+.++..+++.|.... +. -..|+.-+++ +|++..+.....-+.. +-
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LL 321 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLL 321 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhc
Confidence 55566655544311 11122233466666666664431 11 1223333455 5665555443221111 10
Q ss_pred -----CCcccceeecccccccccc--CCCcCCCCccEEEccCCcCcccchhh--hhCCCCCcEEEcCCC-----------
Q 037792 176 -----NLASLQILNISENNLSGSM--ISTLNLSSVEHLYLQNNALGGSIPNT--FFRGSALETLDLRIN----------- 235 (558)
Q Consensus 176 -----~l~~L~~L~L~~n~i~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~~~L~~L~l~~n----------- 235 (558)
.-..=-++++..|...+.. .....-..+++|...+|.+.+..... ....++.+.+++...
T Consensus 322 gla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~ 401 (553)
T KOG4242|consen 322 GLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTE 401 (553)
T ss_pred ccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceecccccc
Confidence 0011234455555443211 11112345777888777776543322 223345555555443
Q ss_pred ---------CCCCcCEEEccCCcCCCCc---hhhccCCCCCCEEEcccCcCc
Q 037792 236 ---------EHSNLRTLLLRGNYLQGPI---PHQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 236 ---------~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~ 275 (558)
..--+..+.++.+.+.... ......-+.+..|++++|...
T Consensus 402 a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 402 APPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred chhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 1233566667777665322 223445567888888888764
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=79.30 E-value=17 Score=36.90 Aligned_cols=107 Identities=21% Similarity=0.098 Sum_probs=53.4
Q ss_pred CCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhh---cCCCCCCEEEccCCcCCCCCcccccCC---CC
Q 037792 82 FSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGL---LRSTELMVLDISNNRLSGHIPSWMGNF---ST 155 (558)
Q Consensus 82 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~ 155 (558)
+.+++++++.|.+....+..+..-. --+.++.|..+......+ ..-..+.+++++.|.....+|..+..+ ..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 4567777777777665544432211 114455555443211111 111356777787777776666544322 24
Q ss_pred CcEEEcccCcCcc---cchhhhcCCcccceeecccccc
Q 037792 156 LQILSMSKNLLEG---NIPVQFNNLASLQILNISENNL 190 (558)
Q Consensus 156 L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i 190 (558)
++.++.+...+.- ..+-..+.-+++...+++.|..
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 5666666555431 1111223344666666666643
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=78.82 E-value=1.1 Score=54.70 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=28.8
Q ss_pred eccCCcCCccchhhhhccccCCeEeCCCCcccc
Q 037792 384 NLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 416 (558)
Q Consensus 384 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 416 (558)
||++|+|+.+.+..|..+++|+.|+|++|.+.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999997778889999999999999998864
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.73 E-value=2.2 Score=24.11 Aligned_cols=14 Identities=50% Similarity=0.743 Sum_probs=7.2
Q ss_pred ccCCeEeCCCCccc
Q 037792 402 KMIESLDLSHNKLN 415 (558)
Q Consensus 402 ~~L~~L~Ls~N~i~ 415 (558)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.66 E-value=3.2 Score=23.37 Aligned_cols=18 Identities=33% Similarity=0.682 Sum_probs=11.1
Q ss_pred CCccEEEccCCcCCCCCCh
Q 037792 8 HGLHSLDISRNSFSGKLPQ 26 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~ 26 (558)
.+|+.|+.++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35666666666666 5554
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.81 E-value=3.1 Score=23.88 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=7.8
Q ss_pred cCCCeeeccCCcCC
Q 037792 378 QNIHGLNLSHNFLS 391 (558)
Q Consensus 378 ~~L~~L~Ls~N~l~ 391 (558)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34555666666554
No 92
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=57.04 E-value=6.5 Score=30.64 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=8.3
Q ss_pred hhhhHHHHHHHHHHHHHHHh
Q 037792 497 YWSFVASCVTVMLGLLAILW 516 (558)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~ 516 (558)
+.++++++++++.+++++++
T Consensus 68 iagi~vg~~~~v~~lv~~l~ 87 (96)
T PTZ00382 68 IAGISVAVVAVVGGLVGFLC 87 (96)
T ss_pred EEEEEeehhhHHHHHHHHHh
Confidence 34444444444433333333
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.63 E-value=12 Score=38.71 Aligned_cols=67 Identities=22% Similarity=0.204 Sum_probs=36.2
Q ss_pred hhcCCCccEEEccCCcCCCCC--chhhhCCCCCCEEEcccc--cCCccchHHHHhcCCCCCEEEccCCccCc
Q 037792 29 GIVLPKLVYMNISKNSFEGNI--PSSIGKMQGLRLLDVSSN--NFAGELSQSLVINCFSLEWLDLSNNNFVG 96 (558)
Q Consensus 29 ~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~i~~ 96 (558)
....+.+..++|++|++.... ..--...|+|+.|+|++| .+.. .++----+...|++|-+.+|++..
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hhhhhhhcCCCHHHeeecCCcccc
Confidence 334566777777777765221 111234577777888777 3331 111000123457777788887754
No 94
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=50.70 E-value=14 Score=30.08 Aligned_cols=20 Identities=5% Similarity=0.273 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHHHHHHhh
Q 037792 498 WSFVASCVTVMLGLLAILWV 517 (558)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~ 517 (558)
.++++++++++++++++++|
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.20 E-value=11 Score=38.82 Aligned_cols=62 Identities=29% Similarity=0.274 Sum_probs=34.1
Q ss_pred hcccCEEEccCCCCCCC--CCccccCccCCCeeeccCC--cCCccc-hhhhhccccCCeEeCCCCccc
Q 037792 353 LELMAGLDLSNNELTGD--IPSEIGDLQNIHGLNLSHN--FLSGSI-PESFSNLKMIESLDLSHNKLN 415 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N--~l~~~~-~~~~~~l~~L~~L~Ls~N~i~ 415 (558)
.+.+..+.|++|++... +...-..-|+|..|+|++| .+.... -..+++ ..|++|-+.+|.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccc
Confidence 45666777888877522 1111123577778888887 333110 011222 34777777787775
No 96
>PTZ00370 STEVOR; Provisional
Probab=41.35 E-value=25 Score=33.08 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHhhccchh
Q 037792 500 FVASCVTVMLGLLAILWVNPYWR 522 (558)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~ 522 (558)
+++.+++++.|+++++++++|.|
T Consensus 259 iaalvllil~vvliilYiwlyrr 281 (296)
T PTZ00370 259 IAALVLLILAVVLIILYIWLYRR 281 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444444433333
No 97
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=37.71 E-value=22 Score=31.92 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=14.1
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhh
Q 037792 492 DLVAFYWSFVASCVTVMLGLLAILWV 517 (558)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (558)
+...++++++++++++++++++++++
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHHH
Confidence 34455566666666555555554444
No 98
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=36.77 E-value=23 Score=19.64 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=7.5
Q ss_pred cCCCeeeccCCc
Q 037792 378 QNIHGLNLSHNF 389 (558)
Q Consensus 378 ~~L~~L~Ls~N~ 389 (558)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 556666666664
No 99
>PF15102 TMEM154: TMEM154 protein family
Probab=33.57 E-value=23 Score=29.76 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=6.6
Q ss_pred HHHHHHHHhhccchhh
Q 037792 508 MLGLLAILWVNPYWRR 523 (558)
Q Consensus 508 ~~~~~~~~~~~~~~~~ 523 (558)
++++++++.+++||+.
T Consensus 72 Ll~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 72 LLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHheeEEeeccc
Confidence 3333333344445543
No 100
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=31.77 E-value=16 Score=23.09 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=8.3
Q ss_pred hhhhHHHHHHHHHHHHHHHh
Q 037792 497 YWSFVASCVTVMLGLLAILW 516 (558)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~ 516 (558)
.+++++.++++++++..+++
T Consensus 14 a~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 14 AVGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred EEEEEechHHHHHHHHHHhh
Confidence 34444444444444333333
No 101
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=31.41 E-value=38 Score=31.90 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q 037792 501 VASCVTVMLGLLAILWV 517 (558)
Q Consensus 501 ~~~~~~~~~~~~~~~~~ 517 (558)
++.+++++.|+++++++
T Consensus 264 aalvllil~vvliiLYi 280 (295)
T TIGR01478 264 AALVLIILTVVLIILYI 280 (295)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334344444444
No 102
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=28.86 E-value=1.1e+02 Score=19.75 Aligned_cols=21 Identities=5% Similarity=0.176 Sum_probs=10.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHh
Q 037792 496 FYWSFVASCVTVMLGLLAILW 516 (558)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~ 516 (558)
.++.++.++++.+++.+.+.+
T Consensus 7 s~L~~~F~~lIC~Fl~~~~~F 27 (54)
T PF06716_consen 7 SYLLLAFGFLICLFLFCLVVF 27 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444333
No 103
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=28.80 E-value=75 Score=20.04 Aligned_cols=31 Identities=10% Similarity=0.007 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccchhhHHHH
Q 037792 497 YWSFVASCVTVMLGLLAILWVNPYWRRLWFY 527 (558)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (558)
..+++.++.+-+.+++..+.+...||..|-+
T Consensus 7 llflgl~~~lQL~LL~FlL~fFLV~Wd~fgC 37 (44)
T PF08135_consen 7 LLFLGLTFALQLLLLVFLLFFFLVYWDQFGC 37 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444445444444444444555556665543
No 104
>PRK01844 hypothetical protein; Provisional
Probab=28.29 E-value=87 Score=22.74 Aligned_cols=19 Identities=5% Similarity=0.193 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhccchhhHH
Q 037792 507 VMLGLLAILWVNPYWRRLW 525 (558)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~ 525 (558)
+++.+++.+++.+++-.+|
T Consensus 14 li~G~~~Gff~ark~~~k~ 32 (72)
T PRK01844 14 LVAGVALGFFIARKYMMNY 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444
No 105
>PF15050 SCIMP: SCIMP protein
Probab=27.54 E-value=69 Score=25.70 Aligned_cols=8 Identities=13% Similarity=0.285 Sum_probs=3.1
Q ss_pred HHHHHHhh
Q 037792 510 GLLAILWV 517 (558)
Q Consensus 510 ~~~~~~~~ 517 (558)
+++++++|
T Consensus 21 ~~lglIly 28 (133)
T PF15050_consen 21 VVLGLILY 28 (133)
T ss_pred HHHHHHHH
Confidence 33333333
No 106
>PRK00523 hypothetical protein; Provisional
Probab=27.43 E-value=95 Score=22.56 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhccchhhHH
Q 037792 507 VMLGLLAILWVNPYWRRLW 525 (558)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~ 525 (558)
+++.+++.+++.+++-.+|
T Consensus 15 li~G~~~Gffiark~~~k~ 33 (72)
T PRK00523 15 LIVGGIIGYFVSKKMFKKQ 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444
No 107
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=26.44 E-value=32 Score=22.68 Aligned_cols=10 Identities=30% Similarity=0.763 Sum_probs=8.1
Q ss_pred CCCCCCCCCC
Q 037792 459 NLFLCGPAIN 468 (558)
Q Consensus 459 N~~~C~~~~~ 468 (558)
|||.|+|.+.
T Consensus 1 NP~~CdC~l~ 10 (51)
T smart00082 1 NPFICDCELR 10 (51)
T ss_pred CCccCcCCch
Confidence 8999999643
No 108
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=24.21 E-value=73 Score=24.37 Aligned_cols=29 Identities=3% Similarity=0.013 Sum_probs=15.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhccchh
Q 037792 494 VAFYWSFVASCVTVMLGLLAILWVNPYWR 522 (558)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (558)
.+.|+..+.+++++++++..+++.+.+|+
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 34455555555555555555555555555
No 109
>PHA02849 putative transmembrane protein; Provisional
Probab=22.22 E-value=1.4e+02 Score=21.87 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=5.6
Q ss_pred chhhHHHHHHH
Q 037792 520 YWRRLWFYFIE 530 (558)
Q Consensus 520 ~~~~~~~~~~~ 530 (558)
-+-.+|.|-.+
T Consensus 35 lyLvkws~v~d 45 (82)
T PHA02849 35 LYLIKWSYVIN 45 (82)
T ss_pred HHHHHHHHHHH
Confidence 34456666443
No 110
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=21.30 E-value=84 Score=30.59 Aligned_cols=10 Identities=0% Similarity=-0.037 Sum_probs=4.0
Q ss_pred hhhHHHHHHH
Q 037792 498 WSFVASCVTV 507 (558)
Q Consensus 498 ~~~~~~~~~~ 507 (558)
+-+++|++++
T Consensus 273 vPIaVG~~La 282 (306)
T PF01299_consen 273 VPIAVGAALA 282 (306)
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 111
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=21.27 E-value=1.3e+02 Score=22.22 Aligned_cols=25 Identities=4% Similarity=-0.096 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHH
Q 037792 502 ASCVTVMLGLLAILWVNPYWRRLWF 526 (558)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (558)
++..+++.+++.+++++++++..|+
T Consensus 33 ~~~G~~~G~~~s~l~frrR~~pv~l 57 (75)
T PF04418_consen 33 TGLGFGIGVVFSLLFFRRRAWPVAL 57 (75)
T ss_pred HhhhhhHHHHHHHHHHccchHHHHh
Confidence 3334444455667777777777765
Done!