Query 037792
Match_columns 558
No_of_seqs 411 out of 4383
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 06:54:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.9E-53 1.7E-57 464.8 30.7 459 6-477 267-754 (768)
2 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-49 4.5E-54 442.0 31.4 445 6-467 22-565 (844)
3 3rgz_A Protein brassinosteroid 100.0 4.4E-47 1.5E-51 417.5 29.1 456 4-464 219-719 (768)
4 3t6q_A CD180 antigen; protein- 100.0 6.4E-46 2.2E-50 399.1 29.9 431 8-466 33-564 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-44 3.9E-49 394.6 34.3 115 353-467 503-627 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-45 4.9E-50 396.4 26.8 406 8-467 32-563 (606)
7 4eco_A Uncharacterized protein 100.0 4.9E-44 1.7E-48 384.6 26.9 387 8-465 81-603 (636)
8 2z63_A TOLL-like receptor 4, v 100.0 2.2E-43 7.5E-48 376.7 27.5 408 7-467 27-536 (570)
9 3v47_A TOLL-like receptor 5B a 100.0 3.5E-43 1.2E-47 364.4 27.4 362 10-444 12-413 (455)
10 4ecn_A Leucine-rich repeat pro 100.0 6E-43 2.1E-47 382.2 29.4 386 8-463 323-841 (876)
11 3j0a_A TOLL-like receptor 5; m 100.0 6E-43 2E-47 388.6 24.7 426 4-480 44-597 (844)
12 4eco_A Uncharacterized protein 100.0 5.1E-43 1.7E-47 376.6 23.1 341 24-442 198-603 (636)
13 3t6q_A CD180 antigen; protein- 100.0 3E-41 1E-45 362.7 33.0 402 10-463 14-490 (606)
14 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-41 8.5E-46 365.6 31.5 412 4-466 47-584 (635)
15 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-41 5.5E-46 357.9 29.1 401 8-467 21-486 (520)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-41 8.3E-46 359.2 30.6 399 7-466 25-514 (549)
17 1ziw_A TOLL-like receptor 3; i 100.0 6.3E-41 2.2E-45 365.1 34.6 443 8-462 25-549 (680)
18 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-41 5.8E-46 364.7 27.3 399 10-463 13-535 (606)
19 4ecn_A Leucine-rich repeat pro 100.0 1.8E-41 6.3E-46 370.5 26.4 363 24-466 440-870 (876)
20 2z63_A TOLL-like receptor 4, v 100.0 4.4E-41 1.5E-45 358.9 26.0 390 3-448 47-540 (570)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.3E-40 1.5E-44 350.0 29.5 378 7-466 30-514 (562)
22 3v47_A TOLL-like receptor 5B a 100.0 4.1E-39 1.4E-43 333.9 29.7 359 35-466 12-412 (455)
23 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-39 1.2E-43 340.0 27.1 381 4-444 41-486 (520)
24 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-39 6.4E-44 344.6 24.5 385 4-445 46-516 (549)
25 2id5_A Lingo-1, leucine rich r 100.0 1.3E-38 4.6E-43 331.8 25.2 346 10-465 13-359 (477)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.6E-38 2.9E-42 332.3 25.7 358 7-446 51-517 (562)
27 4g8a_A TOLL-like receptor 4; l 100.0 3.3E-37 1.1E-41 333.2 26.1 396 3-445 71-586 (635)
28 1o6v_A Internalin A; bacterial 100.0 5.5E-36 1.9E-40 310.8 33.7 248 6-275 44-300 (466)
29 2id5_A Lingo-1, leucine rich r 100.0 5.6E-37 1.9E-41 319.6 24.8 322 60-466 14-337 (477)
30 3o6n_A APL1; leucine-rich repe 100.0 5.4E-36 1.9E-40 303.7 26.6 335 32-466 44-378 (390)
31 1o6v_A Internalin A; bacterial 100.0 7E-35 2.4E-39 302.4 33.1 337 32-464 45-390 (466)
32 3oja_B Anopheles plasmodium-re 100.0 6.4E-35 2.2E-39 311.8 26.5 334 32-465 50-383 (597)
33 3bz5_A Internalin-J, INLJ; leu 100.0 6.3E-35 2.2E-39 300.5 24.1 336 5-444 39-392 (457)
34 3o6n_A APL1; leucine-rich repe 100.0 1.4E-34 4.8E-39 293.3 25.6 334 6-441 43-376 (390)
35 1jl5_A Outer protein YOPM; leu 100.0 2.3E-35 7.9E-40 303.5 19.6 383 6-463 9-430 (454)
36 4fmz_A Internalin; leucine ric 100.0 2.3E-33 7.9E-38 279.8 32.0 304 32-439 43-346 (347)
37 4fmz_A Internalin; leucine ric 100.0 4.5E-33 1.6E-37 277.7 30.3 306 5-415 41-346 (347)
38 3oja_B Anopheles plasmodium-re 100.0 2.1E-33 7.2E-38 300.1 25.7 313 6-418 49-361 (597)
39 1z7x_W Ribonuclease inhibitor; 100.0 4.5E-35 1.5E-39 304.0 7.5 363 7-440 2-412 (461)
40 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-32 3.9E-37 283.6 24.6 222 24-284 34-255 (457)
41 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-33 8.6E-38 274.7 18.1 258 130-471 50-312 (313)
42 1jl5_A Outer protein YOPM; leu 100.0 1.1E-32 3.7E-37 283.6 20.6 363 32-462 10-409 (454)
43 2ft3_A Biglycan; proteoglycan, 100.0 9.4E-32 3.2E-36 266.3 24.3 266 83-437 55-331 (332)
44 1xku_A Decorin; proteoglycan, 100.0 2.7E-31 9.3E-36 262.8 25.8 288 58-437 32-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.6E-31 5.5E-36 264.6 22.7 304 17-413 13-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 6.4E-31 2.2E-35 260.1 25.7 289 34-413 32-330 (330)
47 1ogq_A PGIP-2, polygalacturona 100.0 9.7E-32 3.3E-36 263.4 15.3 253 83-441 51-306 (313)
48 1z7x_W Ribonuclease inhibitor; 100.0 4.5E-32 1.5E-36 281.4 6.5 358 4-440 24-441 (461)
49 2z66_A Variable lymphocyte rec 100.0 5.4E-29 1.8E-33 243.6 16.7 272 110-465 11-290 (306)
50 2z80_A TOLL-like receptor 2, v 100.0 8.1E-29 2.8E-33 247.3 17.9 281 55-444 29-319 (353)
51 3ogk_B Coronatine-insensitive 100.0 1.1E-29 3.9E-34 271.9 9.2 394 5-441 70-528 (592)
52 2z80_A TOLL-like receptor 2, v 100.0 1.2E-28 4.1E-33 246.1 15.9 259 6-280 29-294 (353)
53 3zyj_A Leucine-rich repeat-con 100.0 1.8E-27 6.2E-32 244.8 22.9 252 107-444 44-297 (440)
54 3zyi_A Leucine-rich repeat-con 100.0 2.6E-27 8.8E-32 244.5 23.7 252 107-444 55-308 (452)
55 3ogk_B Coronatine-insensitive 100.0 7.5E-30 2.6E-34 273.3 4.3 400 12-462 54-526 (592)
56 3zyj_A Leucine-rich repeat-con 100.0 2.4E-27 8.1E-32 243.9 22.7 245 85-415 46-292 (440)
57 3zyi_A Leucine-rich repeat-con 100.0 2.4E-27 8.2E-32 244.8 22.5 246 84-415 56-303 (452)
58 2z66_A Variable lymphocyte rec 100.0 8.6E-28 2.9E-32 235.0 18.1 150 36-190 10-162 (306)
59 1ozn_A Reticulon 4 receptor; N 100.0 1.5E-27 5.1E-32 230.8 17.4 231 154-465 32-264 (285)
60 1ozn_A Reticulon 4 receptor; N 99.9 2.9E-27 1E-31 228.7 17.6 263 11-292 14-278 (285)
61 4fcg_A Uncharacterized protein 99.9 6.2E-27 2.1E-31 230.6 19.5 233 8-275 81-314 (328)
62 4fcg_A Uncharacterized protein 99.9 1.4E-26 4.9E-31 228.0 18.1 235 105-439 80-314 (328)
63 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-25 4.3E-30 237.9 26.0 68 353-425 240-307 (622)
64 2p1m_B Transport inhibitor res 99.9 7.2E-28 2.5E-32 258.0 7.0 389 5-439 63-519 (594)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-27 6.1E-32 233.7 9.2 83 353-439 168-250 (317)
66 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-27 8.7E-32 232.6 9.7 89 353-443 190-280 (317)
67 3oja_A Leucine-rich immune mol 99.9 3.9E-27 1.3E-31 244.6 10.9 244 130-466 34-286 (487)
68 3g06_A SSPH2 (leucine-rich rep 99.9 3.3E-25 1.1E-29 234.7 25.0 173 10-214 42-214 (622)
69 1wwl_A Monocyte differentiatio 99.9 1.7E-27 5.8E-32 233.3 5.4 248 5-276 40-310 (312)
70 1wwl_A Monocyte differentiatio 99.9 8.2E-27 2.8E-31 228.4 9.3 248 81-440 42-310 (312)
71 2p1m_B Transport inhibitor res 99.9 2E-27 6.7E-32 254.6 0.7 384 5-439 102-544 (594)
72 3oja_A Leucine-rich immune mol 99.9 3.4E-26 1.2E-30 237.5 9.7 244 107-444 35-287 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 1.6E-24 5.6E-29 208.3 18.3 211 155-447 29-245 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 2.4E-24 8.1E-29 207.2 19.0 199 11-214 10-213 (276)
75 1p9a_G Platelet glycoprotein I 99.9 6.2E-24 2.1E-28 205.2 19.4 113 353-465 99-211 (290)
76 2o6q_A Variable lymphocyte rec 99.9 8E-24 2.7E-28 202.7 19.7 202 9-215 17-219 (270)
77 2o6q_A Variable lymphocyte rec 99.9 1.6E-23 5.6E-28 200.5 20.8 206 155-444 17-223 (270)
78 1p9a_G Platelet glycoprotein I 99.9 2.1E-23 7.1E-28 201.5 18.3 203 4-214 6-208 (290)
79 3rfs_A Internalin B, repeat mo 99.9 2.6E-23 8.8E-28 199.3 14.4 228 9-264 20-248 (272)
80 3rfs_A Internalin B, repeat mo 99.9 1.7E-23 5.9E-28 200.5 11.3 227 34-287 20-247 (272)
81 3goz_A Leucine-rich repeat-con 99.9 1.7E-23 5.7E-28 209.4 9.5 182 62-276 3-210 (362)
82 3goz_A Leucine-rich repeat-con 99.9 3.9E-23 1.3E-27 206.7 11.0 261 12-283 2-305 (362)
83 2xwt_C Thyrotropin receptor; s 99.9 2.3E-22 7.8E-27 188.9 13.5 209 14-234 17-235 (239)
84 3m19_A Variable lymphocyte rec 99.9 9E-22 3.1E-26 186.2 17.3 183 179-444 15-197 (251)
85 2ca6_A RAN GTPase-activating p 99.9 3.5E-23 1.2E-27 209.1 7.7 258 9-279 10-320 (386)
86 2ca6_A RAN GTPase-activating p 99.9 2.3E-23 7.9E-28 210.5 6.0 91 353-443 215-320 (386)
87 2xwt_C Thyrotropin receptor; s 99.9 4E-22 1.4E-26 187.2 13.8 207 45-273 23-237 (239)
88 2ast_B S-phase kinase-associat 99.9 1.6E-22 5.4E-27 200.4 10.5 229 130-444 70-311 (336)
89 3m19_A Variable lymphocyte rec 99.9 1.5E-21 5.1E-26 184.7 16.4 179 9-192 15-193 (251)
90 2ast_B S-phase kinase-associat 99.9 2.2E-22 7.5E-27 199.3 10.4 256 58-424 48-315 (336)
91 1h6u_A Internalin H; cell adhe 99.9 4.2E-21 1.4E-25 187.2 16.8 172 32-217 40-211 (308)
92 4glp_A Monocyte differentiatio 99.9 1.1E-21 3.7E-26 191.8 11.2 226 8-251 64-307 (310)
93 4glp_A Monocyte differentiatio 99.9 1.4E-21 4.9E-26 190.9 12.0 225 33-276 64-308 (310)
94 4ay9_X Follicle-stimulating ho 99.8 8.3E-21 2.8E-25 188.8 15.6 240 11-272 12-256 (350)
95 1h6u_A Internalin H; cell adhe 99.8 3.6E-20 1.2E-24 180.6 17.4 209 37-276 23-231 (308)
96 4ay9_X Follicle-stimulating ho 99.8 1.1E-19 3.8E-24 180.6 16.7 179 83-275 31-215 (350)
97 2o6s_A Variable lymphocyte rec 99.8 1.7E-19 5.7E-24 165.4 15.5 176 10-197 9-184 (208)
98 2v9t_B SLIT homolog 2 protein 99.8 1.7E-19 5.9E-24 166.6 13.4 157 204-444 14-170 (220)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 6.3E-20 2.2E-24 169.5 10.2 138 239-444 33-171 (220)
100 2o6s_A Variable lymphocyte rec 99.8 1.2E-19 4.3E-24 166.3 12.1 175 36-220 10-184 (208)
101 2v9t_B SLIT homolog 2 protein 99.8 8.9E-20 3E-24 168.5 11.1 155 241-466 14-169 (220)
102 2xot_A Amphoterin-induced prot 99.8 8.5E-20 2.9E-24 182.2 11.3 181 181-443 21-206 (361)
103 1h6t_A Internalin B; cell adhe 99.8 7.8E-19 2.7E-23 169.6 16.8 170 32-215 45-214 (291)
104 2xot_A Amphoterin-induced prot 99.8 4.7E-19 1.6E-23 176.8 13.5 176 11-191 21-202 (361)
105 3cvr_A Invasion plasmid antige 99.8 1.1E-18 3.9E-23 182.4 15.5 186 9-223 60-252 (571)
106 1m9s_A Internalin B; cell inva 99.8 5.8E-19 2E-23 186.7 12.9 189 10-215 23-211 (605)
107 3e6j_A Variable lymphocyte rec 99.8 2.3E-18 7.9E-23 160.1 15.3 158 202-444 20-177 (229)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-18 7.3E-23 159.2 14.1 153 11-168 14-167 (220)
109 1h6t_A Internalin B; cell adhe 99.8 6.3E-18 2.2E-22 163.2 15.9 164 38-215 29-192 (291)
110 3e6j_A Variable lymphocyte rec 99.8 5.9E-18 2E-22 157.4 14.6 155 9-169 20-174 (229)
111 3cvr_A Invasion plasmid antige 99.8 5.5E-18 1.9E-22 177.3 15.6 195 58-286 60-254 (571)
112 1m9s_A Internalin B; cell inva 99.8 7E-18 2.4E-22 178.5 15.8 177 5-197 40-216 (605)
113 1w8a_A SLIT protein; signaling 99.8 3.2E-18 1.1E-22 154.5 11.4 114 353-466 53-166 (192)
114 4ezg_A Putative uncharacterize 99.7 1.7E-17 5.8E-22 150.5 12.9 153 54-214 41-194 (197)
115 1dce_A Protein (RAB geranylger 99.7 3.5E-20 1.2E-24 194.9 -7.5 204 151-444 346-551 (567)
116 3sb4_A Hypothetical leucine ri 99.7 1.5E-17 5E-22 163.8 11.2 288 56-433 24-328 (329)
117 1xeu_A Internalin C; cellular 99.7 1.2E-17 3.9E-22 158.8 10.0 170 7-193 18-187 (263)
118 4ezg_A Putative uncharacterize 99.7 3.1E-17 1.1E-21 148.7 11.8 151 32-191 43-194 (197)
119 1dce_A Protein (RAB geranylger 99.7 3.1E-19 1.1E-23 187.6 -2.2 181 6-194 347-549 (567)
120 3sb4_A Hypothetical leucine ri 99.7 4.2E-17 1.4E-21 160.5 12.7 287 32-409 24-328 (329)
121 2wfh_A SLIT homolog 2 protein 99.7 8.8E-17 3E-21 144.9 12.4 113 353-466 30-143 (193)
122 2wfh_A SLIT homolog 2 protein 99.7 6.2E-17 2.1E-21 146.0 10.1 132 241-444 13-144 (193)
123 1w8a_A SLIT protein; signaling 99.7 1.4E-16 4.7E-21 143.7 11.7 115 353-467 28-144 (192)
124 1xeu_A Internalin C; cellular 99.7 1.8E-16 6E-21 150.5 11.5 151 4-169 37-187 (263)
125 4b8c_D Glucose-repressible alc 99.7 5.8E-17 2E-21 175.8 6.4 191 8-211 173-369 (727)
126 2ell_A Acidic leucine-rich nuc 99.6 5.1E-16 1.7E-20 136.9 10.8 135 237-441 23-162 (168)
127 4fs7_A Uncharacterized protein 99.6 4.6E-15 1.6E-19 149.8 18.0 316 23-436 61-376 (394)
128 2je0_A Acidic leucine-rich nuc 99.6 7.2E-16 2.5E-20 132.9 9.7 129 237-435 16-149 (149)
129 4fdw_A Leucine rich hypothetic 99.6 8.1E-15 2.8E-19 147.4 18.8 240 8-275 113-358 (401)
130 2o6r_A Variable lymphocyte rec 99.6 2.3E-15 7.9E-20 133.9 12.5 92 353-444 51-142 (177)
131 2ell_A Acidic leucine-rich nuc 99.6 2.2E-15 7.5E-20 132.8 11.8 132 33-167 24-160 (168)
132 4fs7_A Uncharacterized protein 99.6 1.1E-14 3.9E-19 146.8 18.0 327 3-431 66-393 (394)
133 4fdw_A Leucine rich hypothetic 99.6 2E-14 6.9E-19 144.5 19.1 82 353-437 299-381 (401)
134 2je0_A Acidic leucine-rich nuc 99.6 3.8E-15 1.3E-19 128.4 10.7 129 6-138 15-148 (149)
135 2o6r_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 129.6 12.2 129 10-143 9-137 (177)
136 4b8c_D Glucose-repressible alc 99.6 4.4E-16 1.5E-20 168.9 3.7 226 32-275 172-404 (727)
137 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-14 5.3E-19 128.3 9.5 130 5-141 16-151 (176)
138 3g39_A Variable lymphocyte rec 99.5 4.2E-14 1.4E-18 124.5 10.9 107 356-465 11-118 (170)
139 1a9n_A U2A', U2A'; complex (nu 99.5 3.8E-14 1.3E-18 125.8 10.0 86 353-440 63-154 (176)
140 3g39_A Variable lymphocyte rec 99.5 5E-14 1.7E-18 124.0 10.6 93 353-445 29-121 (170)
141 2r9u_A Variable lymphocyte rec 99.5 1.2E-13 4E-18 122.1 10.9 106 357-465 15-121 (174)
142 1ds9_A Outer arm dynein; leuci 99.5 1.1E-15 3.8E-20 138.6 -3.0 132 52-191 43-185 (198)
143 2r9u_A Variable lymphocyte rec 99.5 1.5E-13 5E-18 121.4 10.6 93 353-445 32-124 (174)
144 1ds9_A Outer arm dynein; leuci 99.5 2.3E-15 7.7E-20 136.5 -2.3 153 6-167 16-185 (198)
145 4gt6_A Cell surface protein; l 99.4 1.1E-11 3.8E-16 124.9 22.8 80 354-436 288-367 (394)
146 4gt6_A Cell surface protein; l 99.4 1.6E-11 5.4E-16 123.8 23.4 320 24-439 54-391 (394)
147 3un9_A NLR family member X1; l 99.4 5.3E-14 1.8E-18 140.0 -0.2 167 57-223 72-261 (372)
148 2ifg_A High affinity nerve gro 99.4 1.8E-12 6.1E-17 128.4 10.6 107 358-466 12-120 (347)
149 2ifg_A High affinity nerve gro 99.3 2.4E-12 8.3E-17 127.5 8.5 113 353-466 30-145 (347)
150 3un9_A NLR family member X1; l 99.3 2.1E-13 7E-18 135.8 0.5 183 32-214 71-283 (372)
151 4h09_A Hypothetical leucine ri 99.1 3.3E-09 1.1E-13 106.2 21.5 303 30-427 43-357 (379)
152 4h09_A Hypothetical leucine ri 99.1 4.2E-09 1.4E-13 105.4 21.2 290 52-436 41-343 (379)
153 2ra8_A Uncharacterized protein 98.9 2.4E-09 8.2E-14 105.5 9.5 42 172-215 166-207 (362)
154 2ra8_A Uncharacterized protein 98.8 1.2E-08 4E-13 100.6 10.1 148 123-283 165-328 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 2.4E-08 8E-13 88.8 3.4 86 354-439 65-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 1.3E-07 4.5E-12 83.9 5.6 116 52-167 31-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 4.9E-07 1.7E-11 84.3 6.4 78 353-432 169-257 (267)
158 3e4g_A ATP synthase subunit S, 98.3 2.4E-07 8.1E-12 80.1 2.8 85 354-438 61-151 (176)
159 3rw6_A Nuclear RNA export fact 98.2 3.2E-07 1.1E-11 85.6 2.8 80 54-136 167-257 (267)
160 3e4g_A ATP synthase subunit S, 98.1 1.6E-06 5.6E-11 74.9 4.3 84 33-117 61-150 (176)
161 3rfe_A Platelet glycoprotein I 97.4 0.00017 5.7E-09 59.4 5.7 60 382-443 12-72 (130)
162 3rfe_A Platelet glycoprotein I 97.4 0.00017 5.8E-09 59.3 5.2 60 405-466 11-72 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00011 3.9E-09 64.5 4.1 83 355-437 71-168 (197)
164 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00029 1E-08 61.9 5.9 113 53-166 37-169 (197)
165 2lz0_A Uncharacterized protein 59.4 8.2 0.00028 29.2 3.6 43 23-66 10-52 (100)
166 2lz0_A Uncharacterized protein 55.7 13 0.00043 28.2 4.1 37 148-185 14-50 (100)
167 1iij_A ERBB-2 receptor protein 40.2 15 0.00051 21.6 1.7 8 516-523 26-33 (35)
168 2k1k_A Ephrin type-A receptor 32.0 36 0.0012 20.4 2.5 18 497-514 13-30 (38)
169 2klu_A T-cell surface glycopro 22.3 48 0.0016 22.5 2.0 17 499-515 13-29 (70)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.9e-53 Score=464.85 Aligned_cols=459 Identities=34% Similarity=0.497 Sum_probs=354.8
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCC
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLE 85 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 85 (558)
.+++|++|++++|.+++.+|..++..+++|++|++++|.+++..|..++++++|++|++++|.+++.+|...+..+++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 56677777777777777777777765688888888888888888888888888888888888888788877668888888
Q ss_pred EEEccCCccCccCchhhcCCC-ccCeeeccccccccccchhhcC--CCCCCEEEccCCcCCCCCcccccCCCCCcEEEcc
Q 037792 86 WLDLSNNNFVGQIFPNYMNLT-RLWALYLYNNNFSGKIKDGLLR--STELMVLDISNNRLSGHIPSWMGNFSTLQILSMS 162 (558)
Q Consensus 86 ~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 162 (558)
+|++++|.+.+..|..+.+++ +|++|++++|.+++..+..+.. +++|++|++++|.+++..|..+.++++|+.|+++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 888888888877788888777 8888888888888777777666 6788888888888888888888888889999999
Q ss_pred cCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC------
Q 037792 163 KNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN------ 235 (558)
Q Consensus 163 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n------ 235 (558)
+|.+.+..|..+..+++|+.|++++|.+.+..+..+ .+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence 988888888888888889999999888887666555 7888999999999888888888888888999998888
Q ss_pred -----CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccc
Q 037792 236 -----EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAY 310 (558)
Q Consensus 236 -----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (558)
.+++|++|++++|.+++.+|..+..+++|+.|++++|+++|.+|..+.......... ...+.... +.....
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~-~~~~~~~~---~~~~~~ 582 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN-FIAGKRYV---YIKNDG 582 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS-TTCSCEEE---EEECCS
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh-cccccccc---cccccc
Confidence 346788899999988888888888888999999999988888888776543211100 00000000 000000
Q ss_pred cC----------ccc----chhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccC
Q 037792 311 VS----------NYY----NSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGD 376 (558)
Q Consensus 311 ~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 376 (558)
.. .+. ........ .... . .......+..-..+. .+++|+.||+++|++++.+|..++.
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~----~-l~~~~~~g~~~~~~~--~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLST-RNPC----N-ITSRVYGGHTSPTFD--NNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGG-TCCS----C-TTSCEEEEECCCSCS--SSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccchhhhcccc-cccc----c-cccceecccCchhhh--ccccccEEECcCCcccccCCHHHhc
Confidence 00 000 00000000 0000 0 000000000001111 1688999999999999999999999
Q ss_pred ccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCCcccc
Q 037792 377 LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSY 456 (558)
Q Consensus 377 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~ 456 (558)
+++|++|+|++|.+++.+|+.|+++++|++|||++|++++.+|..+..+++|++||+++|+++|.+|...+|.++...++
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~ 734 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 734 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGG
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCC
Q 037792 457 RGNLFLCGPAINKGCTNLPEL 477 (558)
Q Consensus 457 ~~N~~~C~~~~~~~c~~~~~~ 477 (558)
.|||.+|+.++. .|......
T Consensus 735 ~gN~~Lcg~~l~-~C~~~~~~ 754 (768)
T 3rgz_A 735 LNNPGLCGYPLP-RCDPSNAD 754 (768)
T ss_dssp CSCTEEESTTSC-CCCSCC--
T ss_pred cCCchhcCCCCc-CCCCCccC
Confidence 999999999986 88765433
No 2
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-49 Score=442.01 Aligned_cols=445 Identities=21% Similarity=0.240 Sum_probs=243.0
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCC-chhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNI-PSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
-.++|++||+++|.++ .++...+..+++|++|++++|...+.+ |.+|.++++|++|+|++|.++ .+++..+.++++|
T Consensus 22 lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC-EECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc-ccCHhHccCCccc
Confidence 3455666666666665 332222334666666666666333222 555666666666666666665 2322233556666
Q ss_pred CEEEccCCccCccCchh--hcCCCccCeeeccccccccccc-hhhcCCCCCCEEEccCCcCCCCCcccccCC--CCCcEE
Q 037792 85 EWLDLSNNNFVGQIFPN--YMNLTRLWALYLYNNNFSGKIK-DGLLRSTELMVLDISNNRLSGHIPSWMGNF--STLQIL 159 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L 159 (558)
++|++++|.+.+..+.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..+..+ ++|+.|
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 66666666665433333 5566666666666666554433 345566666666666666555544444433 344444
Q ss_pred EcccCcCcccchhhhcCC--------------------------------------------------------------
Q 037792 160 SMSKNLLEGNIPVQFNNL-------------------------------------------------------------- 177 (558)
Q Consensus 160 ~L~~n~l~~~~~~~~~~l-------------------------------------------------------------- 177 (558)
++++|.+.+..+..+..+
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 444444433333322222
Q ss_pred ------cccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC-----------CCCC
Q 037792 178 ------ASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN-----------EHSN 239 (558)
Q Consensus 178 ------~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-----------~~~~ 239 (558)
++|+.|++++|.+.+..+..+ .+++|+.|++++|.+.+..+.++..+++|+.|++++| .+++
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 345555555555554444333 4555555555555555555555555555555555555 2344
Q ss_pred cCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccch----hhhcccccccCccc
Q 037792 240 LRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIV----LRMYLDDAYVSNYY 315 (558)
Q Consensus 240 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 315 (558)
|+.|++++|.+.+..+..+..+++|+.|++++|.+++. +. +.++....+..+.+...+.. ....+..+......
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~-~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~ 417 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-HF-IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD 417 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-SS-CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSST
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-cC-CCCcchhccCCCCcccccccccccceeecccCccccCc
Confidence 55555555555544444555555555555555555421 11 11121111111111111000 00000000000000
Q ss_pred chhhhhhccCCCccccccceeeeeecccccccccc----hhhcccCEEEccCCCCC-----CCCCccccCccCCCeeecc
Q 037792 316 NSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKG----DILELMAGLDLSNNELT-----GDIPSEIGDLQNIHGLNLS 386 (558)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls 386 (558)
.. .... ..+.. ....+..+.....+. ..+++|+.|++++|.++ +..+..|.++++|++|+|+
T Consensus 418 ~~---~~~~-----~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 488 (844)
T 3j0a_A 418 IL---YFLL-----RVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488 (844)
T ss_dssp TH---HHHT-----TCTTC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred hh---hhhh-----cCCcc-ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECC
Confidence 00 0000 00111 111222222221111 11577888888888876 3345668888999999999
Q ss_pred CCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCCcccccCCCCCCCCC
Q 037792 387 HNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 387 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
+|.+++.+|..|.++++|+.|+|++|++++.++..+. ++|+.|++++|++++.+|. .+..+..+++.+||+.|+|+
T Consensus 489 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICECE 564 (844)
T ss_dssp HHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCSSS
T ss_pred CCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh--HhCCcCEEEecCCCcccccc
Confidence 9999988888899999999999999999987777665 7899999999999988775 35688899999999999996
Q ss_pred C
Q 037792 467 I 467 (558)
Q Consensus 467 ~ 467 (558)
.
T Consensus 565 ~ 565 (844)
T 3j0a_A 565 L 565 (844)
T ss_dssp C
T ss_pred c
Confidence 4
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.4e-47 Score=417.53 Aligned_cols=456 Identities=29% Similarity=0.400 Sum_probs=298.4
Q ss_pred CCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCC
Q 037792 4 TSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFS 83 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 83 (558)
+.++++|++|++++|.+++.+|..+.. +++|++|++++|.+++..|.. .+++|++|++++|.+++.+|..++..+++
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~ 295 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDT 295 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTT
T ss_pred cccCCCCCEEECcCCcCCCcccHHHhc-CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCc
Confidence 567889999999999998777766654 889999999999888766654 77888888888888877777766544578
Q ss_pred CCEEEccCCccCccCchhhcCCCccCeeeccccccccccchh-hcCCCCCCEEEccCCcCCCCCcccccCCC-CCcEEEc
Q 037792 84 LEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDG-LLRSTELMVLDISNNRLSGHIPSWMGNFS-TLQILSM 161 (558)
Q Consensus 84 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L 161 (558)
|++|++++|.+.+..|..+.++++|++|++++|.+.+..|.. +.++++|++|++++|.+++..|..+..++ +|+.|++
T Consensus 296 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L 375 (768)
T 3rgz_A 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375 (768)
T ss_dssp CSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEEC
T ss_pred CCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEc
Confidence 888888888887777777888888888888888877555544 77777888888888777766676666655 6666666
Q ss_pred ccCcCcccchhhhcC--CcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCC--
Q 037792 162 SKNLLEGNIPVQFNN--LASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE-- 236 (558)
Q Consensus 162 ~~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-- 236 (558)
++|.+.+..+..+.. +++|+.|++++|.+++..+..+ .+++|++|++++|.+++..|..+..+++|+.|++++|.
T Consensus 376 s~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455 (768)
T ss_dssp CSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc
Confidence 666665555554444 4556666666665554444333 55556666666665555555555555556666555552
Q ss_pred ---------CCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccc---cccccCccccccchhhh
Q 037792 237 ---------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLF---SRVENGYLYGFDIVLRM 304 (558)
Q Consensus 237 ---------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~---~~~~~~~~~~~~~~~~~ 304 (558)
+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.++..++. ..+..+.+.|..+....
T Consensus 456 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 535 (768)
T 3rgz_A 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 345555555555555555555555555555555555555555555444331 22222222222111110
Q ss_pred --------cccccccC-cccchhhhhhccCCCccccccceeeeeeccccc-------------ccc---cchhhcccCEE
Q 037792 305 --------YLDDAYVS-NYYNSTVELLLDGNDGRMLGALVAVNFMTKNRY-------------ESY---KGDILELMAGL 359 (558)
Q Consensus 305 --------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~---~~~~l~~L~~L 359 (558)
.+..+... .++........... ...........+..... ... ....+..+..+
T Consensus 536 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA--ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613 (768)
T ss_dssp GCTTCCEEECCSSEEESBCCGGGGTTTTCBC--CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS
T ss_pred CCCCCCEEECCCCccCCcCChHHhcccchhh--hhccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence 01110000 01100000000000 00000001111111000 000 00124556667
Q ss_pred EccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCc
Q 037792 360 DLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439 (558)
Q Consensus 360 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~ 439 (558)
+++.|.+.+.+|..+..+++|+.|++++|++++.+|..++++++|+.|+|++|.+++.+|..+..+++|++||+++|+++
T Consensus 614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 77888888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CcccCCCCcccccCCCCCCC
Q 037792 440 GPIPD-KEQFSTFDESSYRGNLFLCG 464 (558)
Q Consensus 440 ~~~p~-~~~~~~l~~~~~~~N~~~C~ 464 (558)
|.+|. ...++.++.+++++|+....
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred CcCChHHhCCCCCCEEECcCCccccc
Confidence 99997 57788899999999987543
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.4e-46 Score=399.10 Aligned_cols=431 Identities=20% Similarity=0.185 Sum_probs=270.3
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEE
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 87 (558)
+++++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|.+++ +++..+.++++|++|
T Consensus 33 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE-ECTTTTSSCTTCCEE
T ss_pred CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc-cChhhhcccccccEe
Confidence 35666666666666 4433333346666666666666666666666666666666666666663 322233566666666
Q ss_pred EccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCc--EEEcccCc
Q 037792 88 DLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQ--ILSMSKNL 165 (558)
Q Consensus 88 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~--~L~L~~n~ 165 (558)
++++|.+.+..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..++.+++|+ .|++++|.
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 6666666654455566666666666666666543333334456666666666665555455555555555 45555554
Q ss_pred Cc---------------------------------------------------------------------------ccc
Q 037792 166 LE---------------------------------------------------------------------------GNI 170 (558)
Q Consensus 166 l~---------------------------------------------------------------------------~~~ 170 (558)
+. +..
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 44 333
Q ss_pred hhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC------------CCC
Q 037792 171 PVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN------------EHS 238 (558)
Q Consensus 171 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n------------~~~ 238 (558)
+..|+.+++|+.|++++|.++..+.....+++|++|++++|.+.+..+..+..+++|+.|++++| .++
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 44455556666666666666655444445666666666666666555566666666666666665 235
Q ss_pred CcCEEEccCCcCCCCc--hhhccCCCCCCEEEcccCcCccccChhhhcccc---cccccCccccccchhhhcccccccCc
Q 037792 239 NLRTLLLRGNYLQGPI--PHQLCHLRKLGIMDISHNRLNGSIPACITNMLF---SRVENGYLYGFDIVLRMYLDDAYVSN 313 (558)
Q Consensus 239 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (558)
+|++|++++|.+++.. +..+..+++|++|++++|++.+..|..+..++. ..+..+.+.+......
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------- 420 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP---------- 420 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT----------
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh----------
Confidence 5666666666666444 555666666666666666666555555444321 1111111111100000
Q ss_pred ccchhhhhhccCCCccccccceeeeeecccccccccc---hhhcccCEEEccCCCCCCC---CCccccCccCCCeeeccC
Q 037792 314 YYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKG---DILELMAGLDLSNNELTGD---IPSEIGDLQNIHGLNLSH 387 (558)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~ 387 (558)
....+....+ .+..+....... ..+++|+.|++++|.+.+. .+..+..+++|++|++++
T Consensus 421 --------------~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 421 --------------FQNLHLLKVL-NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp --------------TTTCTTCCEE-ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred --------------hhCcccCCEE-ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 0000011111 112222211111 1278999999999999863 346789999999999999
Q ss_pred CcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC-CcccCCCCcccccCCCCCCCCC
Q 037792 388 NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 388 N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
|.+++..|..|+.+++|+.|++++|++++..|..+..+++| +|++++|++++.+|. ...++.++.+++++||+.|+|+
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99998889999999999999999999999999999999999 999999999987776 4567889999999999999996
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-44 Score=394.59 Aligned_cols=115 Identities=26% Similarity=0.260 Sum_probs=96.8
Q ss_pred hcccCEEEccCCCCCCCC--------CccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhccc
Q 037792 353 LELMAGLDLSNNELTGDI--------PSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 424 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 424 (558)
+++|+.|++++|.+++.. +..+.++++|++|++++|+++...+..|.++++|+.|++++|+++...+..|..
T Consensus 503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence 678889999999887542 223778899999999999998666667999999999999999999888888899
Q ss_pred CCCCCEEecCCCCCcCCCCCC-c-ccCCCCcccccCCCCCCCCCC
Q 037792 425 LHSLSTFDVSYNNLSGPIPDK-E-QFSTFDESSYRGNLFLCGPAI 467 (558)
Q Consensus 425 l~~L~~L~l~~N~l~~~~p~~-~-~~~~l~~~~~~~N~~~C~~~~ 467 (558)
+++|+.|++++|++++..|.. . .++.++.+++++|||.|+|+.
T Consensus 583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999999999999776652 2 578899999999999999974
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-45 Score=396.41 Aligned_cols=406 Identities=19% Similarity=0.128 Sum_probs=274.0
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEE
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 87 (558)
+++++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|.+++..|. .+.++++|++|
T Consensus 32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEE
T ss_pred CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccCCEE
Confidence 56777777777776 45554444577777777777777766666777777777777777777633333 34667777777
Q ss_pred EccCCccCccCchhhcCCCccCeeecccccccc-ccchhhcCCCCCCEEEccCCcCCCCCcccccCCC------------
Q 037792 88 DLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSG-KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFS------------ 154 (558)
Q Consensus 88 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------------ 154 (558)
++++|.+.+..+..+.++++|++|++++|.+.+ ..|..+.++++|++|++++|.+++..+..++.+.
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 777777766555667777777777777777764 3466677777777777777776655444443322
Q ss_pred ---------------CCcEEEcccCcCcc---------------------------------------------------
Q 037792 155 ---------------TLQILSMSKNLLEG--------------------------------------------------- 168 (558)
Q Consensus 155 ---------------~L~~L~L~~n~l~~--------------------------------------------------- 168 (558)
+|+.|++++|.+.+
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 34455554443320
Q ss_pred -------cchh---------------------hhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhh
Q 037792 169 -------NIPV---------------------QFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNT 220 (558)
Q Consensus 169 -------~~~~---------------------~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 220 (558)
..+. .+..+++|+.|++++|.+...+ .. .+++|++|++++|...+.. .
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~ 345 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--K 345 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--C
T ss_pred ccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--h
Confidence 0000 1122223334444444432222 11 3444444444444332222 4
Q ss_pred hhCCCCCcEEEcCCC-------------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccC-hhhhccc
Q 037792 221 FFRGSALETLDLRIN-------------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP-ACITNML 286 (558)
Q Consensus 221 ~~~~~~L~~L~l~~n-------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~ 286 (558)
+..+++|+.|++++| .+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..| ..+.+++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 556788889999888 35788899999988874 55778888999999999998876665 4444433
Q ss_pred cc---ccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccC
Q 037792 287 FS---RVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSN 363 (558)
Q Consensus 287 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 363 (558)
.. .+..+.+.+... ..+ ..+++|++|++++
T Consensus 425 ~L~~L~l~~n~l~~~~~---------------------------------------------~~~--~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFD---------------------------------------------GIF--LGLTSLNTLKMAG 457 (606)
T ss_dssp TCCEEECTTSCCEECCT---------------------------------------------TTT--TTCTTCCEEECTT
T ss_pred cCCEEECcCCCCCccch---------------------------------------------hhh--cCCCCCCEEECCC
Confidence 11 111111100000 000 1178999999999
Q ss_pred CCCCC-CCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCC
Q 037792 364 NELTG-DIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPI 442 (558)
Q Consensus 364 n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 442 (558)
|.+.+ ..|..+..+++|++|++++|.+++..|..|+++++|++|++++|++++..|..+..+++|++|++++|+++...
T Consensus 458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEE
T ss_pred CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccC
Confidence 99997 47888999999999999999999988999999999999999999999998999999999999999999999544
Q ss_pred CCCcccC-CCCcccccCCCCCCCCCC
Q 037792 443 PDKEQFS-TFDESSYRGNLFLCGPAI 467 (558)
Q Consensus 443 p~~~~~~-~l~~~~~~~N~~~C~~~~ 467 (558)
+....+. +++.+++++||+.|+|+.
T Consensus 538 ~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 538 GILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp SCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred HhHhhhcccCcEEEccCCCcccCCcc
Confidence 4344454 589999999999999964
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.9e-44 Score=384.57 Aligned_cols=387 Identities=21% Similarity=0.276 Sum_probs=323.7
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcC------------------------------------------
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSF------------------------------------------ 45 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i------------------------------------------ 45 (558)
.+++.|+|+++.+.|.+|..++. +++|++|+|++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~-L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGG-CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChHHhc-CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 57999999999999999988876 99999999998843
Q ss_pred ------------------------------------CCCCchhhhCCCCCCEEEcccccCCcc-----------------
Q 037792 46 ------------------------------------EGNIPSSIGKMQGLRLLDVSSNNFAGE----------------- 72 (558)
Q Consensus 46 ------------------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------- 72 (558)
++ +|..++++++|++|++++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 34 678899999999999999999964
Q ss_pred chHHHHh--cCCCCCEEEccCCccCccCchhhcCCCccCeeeccccc-ccc-ccchhhcCC------CCCCEEEccCCcC
Q 037792 73 LSQSLVI--NCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNN-FSG-KIKDGLLRS------TELMVLDISNNRL 142 (558)
Q Consensus 73 ~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~l------~~L~~L~L~~n~l 142 (558)
+|..+ . ++++|++|++++|.+.+.+|..+.++++|++|++++|. +++ ..|..+..+ ++|++|++++|.+
T Consensus 239 ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred Cchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 78765 5 79999999999999999999999999999999999998 887 788888776 8999999999999
Q ss_pred CCCCcc--cccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCC-ccEEEccCCcCcccchh
Q 037792 143 SGHIPS--WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSS-VEHLYLQNNALGGSIPN 219 (558)
Q Consensus 143 ~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~ 219 (558)
+ .+|. .++++++|+.|++++|.+.+.+| .+..+++|+.|++++|.+...+..+..+++ |++|++++|.++ .+|.
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 9 7887 89999999999999999998888 889999999999999999966666558888 999999999998 7777
Q ss_pred hhhCCC--CCcEEEcCCCCC------------------CCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccC
Q 037792 220 TFFRGS--ALETLDLRINEH------------------SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP 279 (558)
Q Consensus 220 ~~~~~~--~L~~L~l~~n~~------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 279 (558)
.+...+ +|+.|++++|.+ ++|++|++++|.+++..+..+..+++|++|++++|+++ .+|
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence 766554 788888887732 36778888888887555555667788888888888876 444
Q ss_pred hhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEE
Q 037792 280 ACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGL 359 (558)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 359 (558)
.......... ...+++|+.|
T Consensus 474 ~~~~~~~~~~------------------------------------------------------------~~~l~~L~~L 493 (636)
T 4eco_A 474 KNSLKDENEN------------------------------------------------------------FKNTYLLTSI 493 (636)
T ss_dssp SSSSEETTEE------------------------------------------------------------CTTGGGCCEE
T ss_pred HHHhcccccc------------------------------------------------------------ccccCCccEE
Confidence 3322100000 0015589999
Q ss_pred EccCCCCCCCCCcccc--CccCCCeeeccCCcCCccchhhhhccccCCeEeC------CCCcccccCchhcccCCCCCEE
Q 037792 360 DLSNNELTGDIPSEIG--DLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL------SHNKLNGQIPPQLTELHSLSTF 431 (558)
Q Consensus 360 ~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L------s~N~i~~~~~~~l~~l~~L~~L 431 (558)
++++|.++ .+|..+. .+++|++|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|++|
T Consensus 494 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 494 DLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp ECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 99999999 7788776 99999999999999997 8888999999999999 5677888999999999999999
Q ss_pred ecCCCCCcCCCCCCcccCCCCcccccCCCCCCCC
Q 037792 432 DVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 432 ~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~ 465 (558)
++++|++ +.+|.. .++.++.+++++|++.|-.
T Consensus 572 ~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 572 QIGSNDI-RKVNEK-ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp ECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred ECCCCcC-CccCHh-HhCcCCEEECcCCCCcccc
Confidence 9999999 567764 3388999999999998743
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-43 Score=376.72 Aligned_cols=408 Identities=19% Similarity=0.204 Sum_probs=305.7
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCE
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEW 86 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 86 (558)
.+++++|++++|.++ .++...+..+++|++|++++|.+++..+.+|.++++|++|++++|.++ .+++..+.++++|++
T Consensus 27 ~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 27 PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQK 104 (570)
T ss_dssp CSSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCE
T ss_pred cccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccccc
Confidence 346888888888887 555555555888888888888888777777888888888888888887 555555677888888
Q ss_pred EEccCCccCccCchhhcCCCccCeeecccccccc-ccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCC----cEEEc
Q 037792 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSG-KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTL----QILSM 161 (558)
Q Consensus 87 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~L 161 (558)
|++++|.+.+..+..+.++++|++|++++|.+.+ ..|..+.++++|++|++++|.+++..+..++.+++| +.+++
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 8888888876555567888888888888888775 357778888888888888888776666666655555 56666
Q ss_pred ccCcCcccch----------------------------------------------------------------------
Q 037792 162 SKNLLEGNIP---------------------------------------------------------------------- 171 (558)
Q Consensus 162 ~~n~l~~~~~---------------------------------------------------------------------- 171 (558)
++|.+.+..+
T Consensus 185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 6665543333
Q ss_pred -----------hhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC-----
Q 037792 172 -----------VQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN----- 235 (558)
Q Consensus 172 -----------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n----- 235 (558)
..+..+++|+.|++++|.+.+.+.....+ +|++|++++|.+. .+|. ..+++|+.|++++|
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCB
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCccccc
Confidence 33445566777777777776655444455 7777777777776 3443 35678888888776
Q ss_pred ----CCCCcCEEEccCCcCCCCc--hhhccCCCCCCEEEcccCcCccccChhhhcccc---cccccCccccccchhhhcc
Q 037792 236 ----EHSNLRTLLLRGNYLQGPI--PHQLCHLRKLGIMDISHNRLNGSIPACITNMLF---SRVENGYLYGFDIVLRMYL 306 (558)
Q Consensus 236 ----~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~---~~~~~~~~~~~~~~~~~~~ 306 (558)
.+++|++|++++|.+++.. +..+..+++|++|++++|++.+..+. +..++. ..+..+.+.+...
T Consensus 341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~------ 413 (570)
T 2z63_A 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE------ 413 (570)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTT------
T ss_pred cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccc------
Confidence 4678999999999988554 67888999999999999998754332 433221 1111110000000
Q ss_pred cccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeecc
Q 037792 307 DDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLS 386 (558)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 386 (558)
...+ ..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus 414 --------------------------------------~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 453 (570)
T 2z63_A 414 --------------------------------------FSVF--LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453 (570)
T ss_dssp --------------------------------------SCTT--TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred --------------------------------------hhhh--hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECc
Confidence 0000 117899999999999998899999999999999999
Q ss_pred CCcCC-ccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC-CcccCCCCcccccCCCCCCC
Q 037792 387 HNFLS-GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCG 464 (558)
Q Consensus 387 ~N~l~-~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~ 464 (558)
+|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|. ...++.++.+++++||+.|+
T Consensus 454 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 99998 57889999999999999999999999899999999999999999999987776 46778899999999999999
Q ss_pred CCC
Q 037792 465 PAI 467 (558)
Q Consensus 465 ~~~ 467 (558)
|+.
T Consensus 534 ~~~ 536 (570)
T 2z63_A 534 CPR 536 (570)
T ss_dssp TTT
T ss_pred Ccc
Confidence 864
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.5e-43 Score=364.41 Aligned_cols=362 Identities=20% Similarity=0.235 Sum_probs=278.9
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
-+.++.+++.++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 356889999998 8987 3 4799999999999998889999999999999999999987887777789999999999
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchh--hcCCCCCCEEEccCCcCCCCCccc-ccCCCCCcEEEcccCcC
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDG--LLRSTELMVLDISNNRLSGHIPSW-MGNFSTLQILSMSKNLL 166 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l 166 (558)
++|.+.+..+..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +.++++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999888899999999999999999998755544 889999999999999999887776 88999999999999999
Q ss_pred cccchhhhcCC--cccceeeccccccccccCCC---------cCCCCccEEEccCCcCcccchhhhhCC---CCCcEEEc
Q 037792 167 EGNIPVQFNNL--ASLQILNISENNLSGSMIST---------LNLSSVEHLYLQNNALGGSIPNTFFRG---SALETLDL 232 (558)
Q Consensus 167 ~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~---------~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l 232 (558)
.+..+..+..+ .+|+.|++++|.+....... +.+++|++|++++|.+.+..+..+... ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 98888888766 68999999999998765443 245789999999999998888777554 78888888
Q ss_pred CCCC-----------------------CCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccc
Q 037792 233 RINE-----------------------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSR 289 (558)
Q Consensus 233 ~~n~-----------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~ 289 (558)
++|. .++|+.|++++|.+++..|..+..+++|++|++++|++++..|..+.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----- 321 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG----- 321 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-----
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-----
Confidence 8762 245666666666666555666666666666666666665444444333
Q ss_pred cccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCC
Q 037792 290 VENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGD 369 (558)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 369 (558)
+++|+.|++++|.+++.
T Consensus 322 ---------------------------------------------------------------l~~L~~L~Ls~N~l~~~ 338 (455)
T 3v47_A 322 ---------------------------------------------------------------LTHLLKLNLSQNFLGSI 338 (455)
T ss_dssp ---------------------------------------------------------------CTTCCEEECCSSCCCEE
T ss_pred ---------------------------------------------------------------cccCCEEECCCCccCCc
Confidence 45566666666666655
Q ss_pred CCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC
Q 037792 370 IPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 370 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
.+..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|+++|.+|.
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 555666666666666666666655566666666666666666666655555556666666666666666666664
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6e-43 Score=382.23 Aligned_cols=386 Identities=20% Similarity=0.260 Sum_probs=320.8
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEc-cCCcCCCC--------------------------------------
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNI-SKNSFEGN-------------------------------------- 48 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L-s~n~i~~~-------------------------------------- 48 (558)
.+++.|+|+++.+.|.+|+.+.. +++|++|+| ++|.+++.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~-L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGG-CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhc-cccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 57999999999999999988876 999999999 77644322
Q ss_pred --------------------------------------CchhhhCCCCCCEEEcccccCCc-----------------cc
Q 037792 49 --------------------------------------IPSSIGKMQGLRLLDVSSNNFAG-----------------EL 73 (558)
Q Consensus 49 --------------------------------------~~~~~~~l~~L~~L~L~~n~l~~-----------------~~ 73 (558)
+|..++++++|++|+|++|.+++ .+
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 78889999999999999999996 27
Q ss_pred hHHH-HhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccc-ccc-ccchhhcCCC-------CCCEEEccCCcCC
Q 037792 74 SQSL-VINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNN-FSG-KIKDGLLRST-------ELMVLDISNNRLS 143 (558)
Q Consensus 74 ~~~~-~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~l~-------~L~~L~L~~n~l~ 143 (558)
|..+ |.++++|++|++++|.+.+.+|..+.++++|+.|++++|. +++ ..|..+..++ +|+.|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 8776 3489999999999999999999999999999999999998 887 6777665554 9999999999999
Q ss_pred CCCcc--cccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCC-ccEEEccCCcCcccchhh
Q 037792 144 GHIPS--WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSS-VEHLYLQNNALGGSIPNT 220 (558)
Q Consensus 144 ~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~ 220 (558)
.+|. .++++++|+.|++++|.+. .+| .++.+++|+.|++++|.+...+..+..+++ |++|++++|.++ .+|..
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchh
Confidence 7888 8999999999999999998 777 899999999999999999966656557888 999999999998 77777
Q ss_pred hhCCC--CCcEEEcCCCCC----------------CCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhh
Q 037792 221 FFRGS--ALETLDLRINEH----------------SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACI 282 (558)
Q Consensus 221 ~~~~~--~L~~L~l~~n~~----------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 282 (558)
+...+ +|+.|++++|.+ ++|+.|++++|.++...+..+..+++|+.|++++|+++ .+|..+
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 76664 499999999843 27889999999998555555668899999999999987 555543
Q ss_pred hcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEcc
Q 037792 283 TNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLS 362 (558)
Q Consensus 283 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 362 (558)
........ ..+++|+.|+++
T Consensus 717 ~~~~~~~l------------------------------------------------------------~nl~~L~~L~Ls 736 (876)
T 4ecn_A 717 LKPKDGNY------------------------------------------------------------KNTYLLTTIDLR 736 (876)
T ss_dssp SSCTTSCC------------------------------------------------------------TTGGGCCEEECC
T ss_pred hccccccc------------------------------------------------------------cccCCccEEECC
Confidence 22100000 005689999999
Q ss_pred CCCCCCCCCcccc--CccCCCeeeccCCcCCccchhhhhccccCCeEeCCC------CcccccCchhcccCCCCCEEecC
Q 037792 363 NNELTGDIPSEIG--DLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSH------NKLNGQIPPQLTELHSLSTFDVS 434 (558)
Q Consensus 363 ~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~------N~i~~~~~~~l~~l~~L~~L~l~ 434 (558)
+|+++ .+|..+. .+++|++|+|++|.+++ +|..+..+++|+.|+|++ |.+.+.+|..+..+++|+.|+++
T Consensus 737 ~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 737 FNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp SSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence 99998 6777776 89999999999999986 688888999999999976 77888889999999999999999
Q ss_pred CCCCcCCCCCCcccCCCCcccccCCCCCC
Q 037792 435 YNNLSGPIPDKEQFSTFDESSYRGNLFLC 463 (558)
Q Consensus 435 ~N~l~~~~p~~~~~~~l~~~~~~~N~~~C 463 (558)
+|++ +.+|.. .++.++.+++++|++..
T Consensus 815 ~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 815 SNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp SSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred CCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 9999 577764 33688889999988754
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6e-43 Score=388.56 Aligned_cols=426 Identities=21% Similarity=0.209 Sum_probs=277.3
Q ss_pred CCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHH-HHhcCC
Q 037792 4 TSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQS-LVINCF 82 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~l~ 82 (558)
++++++|++|++++|...+.++...+..+++|++|+|++|.+++..|.+|.++++|++|++++|.+++.++.. .+.+++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 5667777777777775555665555555777777777777777666777777777777777777776544432 346677
Q ss_pred CCCEEEccCCccCccCc-hhhcCCCccCeeeccccccccccchhhcCC--------------------------------
Q 037792 83 SLEWLDLSNNNFVGQIF-PNYMNLTRLWALYLYNNNFSGKIKDGLLRS-------------------------------- 129 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l-------------------------------- 129 (558)
+|++|++++|.+.+..+ ..|.++++|++|++++|.+++..+..+..+
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 77777777777765443 356777777777777766654333322111
Q ss_pred --------------------------------------------------------------CCCCEEEccCCcCCCCCc
Q 037792 130 --------------------------------------------------------------TELMVLDISNNRLSGHIP 147 (558)
Q Consensus 130 --------------------------------------------------------------~~L~~L~L~~n~l~~~~~ 147 (558)
++|+.|++++|.+.+..+
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 234444444444444444
Q ss_pred ccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCC
Q 037792 148 SWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSA 226 (558)
Q Consensus 148 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 226 (558)
..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..+..+ .+++|++|++++|.+.+..+..+..+++
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence 555666666666666666666666666666677777777776666544444 6667777777777766555566666677
Q ss_pred CcEEEcCCCC------CCCcCEEEccCCcCCCC---------------------chhhccCCCCCCEEEcccCcCccccC
Q 037792 227 LETLDLRINE------HSNLRTLLLRGNYLQGP---------------------IPHQLCHLRKLGIMDISHNRLNGSIP 279 (558)
Q Consensus 227 L~~L~l~~n~------~~~L~~L~l~~n~l~~~---------------------~~~~~~~l~~L~~L~l~~n~l~~~~p 279 (558)
|+.|++++|. +++|+.|++++|.++.. .+..+..+++|+.|++++|++++..+
T Consensus 364 L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 443 (844)
T 3j0a_A 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443 (844)
T ss_dssp CCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred CCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc
Confidence 7777777663 23455555555554421 12234578999999999999975433
Q ss_pred h----hhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcc
Q 037792 280 A----CITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILEL 355 (558)
Q Consensus 280 ~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (558)
. ...++....+..+.+.+.... ......+.+ +++
T Consensus 444 ~~~~~~~~~L~~L~Ls~N~l~~~~~~----------------------------------------~~~~~~~~~--l~~ 481 (844)
T 3j0a_A 444 DQTPSENPSLEQLFLGENMLQLAWET----------------------------------------ELCWDVFEG--LSH 481 (844)
T ss_dssp SSSSCSCTTCCBCEEESCCCSSSCCS----------------------------------------CCCSSCSSC--BCC
T ss_pred ccccccCCccccccCCCCcccccccc----------------------------------------ccchhhhcC--ccc
Confidence 2 112222222211111100000 000000111 688
Q ss_pred cCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCC
Q 037792 356 MAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSY 435 (558)
Q Consensus 356 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~ 435 (558)
|+.|++++|.+++..|..|..+++|++|+|++|++++..+..+. ++|+.|++++|++++.+|..+ ++|+.|++++
T Consensus 482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~ 556 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITH 556 (844)
T ss_dssp EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEE
T ss_pred ccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecC
Confidence 99999999999999999999999999999999999987777766 899999999999999888775 4799999999
Q ss_pred CCCcCCCCCCcccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Q 037792 436 NNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINKGCTNLPELLEP 480 (558)
Q Consensus 436 N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~~~~~~c~~~~~~~~~ 480 (558)
|++.|.++..+...++ ...|...|+.+....|..|+...+.
T Consensus 557 Np~~C~c~~~~f~~~~----~~~~~~~~~~~~~~~C~~p~~~~g~ 597 (844)
T 3j0a_A 557 NKFICECELSTFINWL----NHTNVTIAGPPADIYCVYPDSFSGV 597 (844)
T ss_dssp ECCCCSSSCCSHHHHH----HHTTTTTCCCGGGCCCSSCSSSCSC
T ss_pred CCcccccccHHHHHHH----HhcCcccccccccCccCCchhhCCC
Confidence 9999988854332221 2345666777777788877655443
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.1e-43 Score=376.63 Aligned_cols=341 Identities=20% Similarity=0.290 Sum_probs=299.3
Q ss_pred CChhhhhcCCCccEEEccCCcCCCC-----------------Cchhhh--CCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 24 LPQNMGIVLPKLVYMNISKNSFEGN-----------------IPSSIG--KMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 24 ~p~~~~~~l~~L~~L~Ls~n~i~~~-----------------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
+|..+.. +++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..+ .++++|
T Consensus 198 ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L 275 (636)
T 4eco_A 198 VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEM 275 (636)
T ss_dssp ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSC
T ss_pred CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCC
Confidence 7777665 99999999999999985 899988 99999999999999998888765 789999
Q ss_pred CEEEccCCc-cCc-cCchhhcCC------CccCeeeccccccccccch--hhcCCCCCCEEEccCCcCCCCCcccccCCC
Q 037792 85 EWLDLSNNN-FVG-QIFPNYMNL------TRLWALYLYNNNFSGKIKD--GLLRSTELMVLDISNNRLSGHIPSWMGNFS 154 (558)
Q Consensus 85 ~~L~l~~n~-i~~-~~~~~~~~l------~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 154 (558)
++|++++|+ +++ .+|..+.++ ++|++|++++|.++ .+|. .+.++++|++|++++|.+++.+| .+..++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 999999998 887 788888776 99999999999999 6777 89999999999999999998888 899999
Q ss_pred CCcEEEcccCcCcccchhhhcCCcc-cceeeccccccccccCCCcC--CCCccEEEccCCcCcccchhhhh-------CC
Q 037792 155 TLQILSMSKNLLEGNIPVQFNNLAS-LQILNISENNLSGSMISTLN--LSSVEHLYLQNNALGGSIPNTFF-------RG 224 (558)
Q Consensus 155 ~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~i~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~-------~~ 224 (558)
+|+.|++++|.+. .+|..+..+++ |+.|++++|.++..+..+.. +++|++|++++|.+.+..|..+. .+
T Consensus 354 ~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 354 KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 9999999999999 78888999999 99999999999966654443 45899999999999998888887 77
Q ss_pred CCCcEEEcCCC-----------CCCCcCEEEccCCcCCCCchhhccCC-------CCCCEEEcccCcCccccChhhh--c
Q 037792 225 SALETLDLRIN-----------EHSNLRTLLLRGNYLQGPIPHQLCHL-------RKLGIMDISHNRLNGSIPACIT--N 284 (558)
Q Consensus 225 ~~L~~L~l~~n-----------~~~~L~~L~l~~n~l~~~~~~~~~~l-------~~L~~L~l~~n~l~~~~p~~~~--~ 284 (558)
++|+.|++++| .+++|++|++++|.++...+..+... ++|++|++++|+++ .+|..+. .
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 511 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT 511 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc
Confidence 89999999998 36889999999999994444444433 39999999999998 6666543 2
Q ss_pred ccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCC
Q 037792 285 MLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNN 364 (558)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 364 (558)
+++|+.|++++|
T Consensus 512 --------------------------------------------------------------------l~~L~~L~Ls~N 523 (636)
T 4eco_A 512 --------------------------------------------------------------------LPYLVGIDLSYN 523 (636)
T ss_dssp --------------------------------------------------------------------CTTCCEEECCSS
T ss_pred --------------------------------------------------------------------CCCcCEEECCCC
Confidence 788999999999
Q ss_pred CCCCCCCccccCccCCCeeec------cCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCC
Q 037792 365 ELTGDIPSEIGDLQNIHGLNL------SHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNL 438 (558)
Q Consensus 365 ~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l 438 (558)
.+++ +|..+..+++|++|++ ++|.+.+.+|..+..+++|++|++++|++. .+|..+. ++|+.|++++|++
T Consensus 524 ~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTT
T ss_pred CCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCC
Confidence 9996 8889999999999999 567888899999999999999999999995 6777665 7999999999999
Q ss_pred cCCC
Q 037792 439 SGPI 442 (558)
Q Consensus 439 ~~~~ 442 (558)
.+.-
T Consensus 600 ~~~~ 603 (636)
T 4eco_A 600 ISID 603 (636)
T ss_dssp CEEE
T ss_pred cccc
Confidence 8643
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3e-41 Score=362.74 Aligned_cols=402 Identities=17% Similarity=0.166 Sum_probs=306.3
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
-++++.++..++ .+|..+. +++++|++++|.+++..|.+|.++++|++|++++|.++ .+++..+.++++|++|++
T Consensus 14 ~~~~~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L 88 (606)
T 3t6q_A 14 NKTYNCENLGLN-EIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVL 88 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC---TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred CceEECCCCCcc-cCcCCCC---CcCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeC
Confidence 457899999999 9998875 48999999999999888999999999999999999999 455555689999999999
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.++++|+.|++++|.+.+.
T Consensus 89 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 89 TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp TTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred CCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence 99999988888999999999999999999987788899999999999999999975545566699999999999999988
Q ss_pred chhhhcCCcccc--eeeccccccccccCCCcCCCCccE------------------------------------------
Q 037792 170 IPVQFNNLASLQ--ILNISENNLSGSMISTLNLSSVEH------------------------------------------ 205 (558)
Q Consensus 170 ~~~~~~~l~~L~--~L~L~~n~i~~~~~~~~~~~~L~~------------------------------------------ 205 (558)
.+..++.+++|+ .|++++|.+.+.++..+...+|++
T Consensus 169 ~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHh
Confidence 899999999999 899999999988776665444444
Q ss_pred ----------EEccCCcCcccchhhhhCCCCCcEEEcCCC----------CCCCcCEEEccCCcCCCCchhhccCCCCCC
Q 037792 206 ----------LYLQNNALGGSIPNTFFRGSALETLDLRIN----------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLG 265 (558)
Q Consensus 206 ----------L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n----------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 265 (558)
|++++|.+++..+..+..+++|+.|++++| .+++|++|++++|.+++..|..+..+++|+
T Consensus 249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence 445555554444444555555555555555 234455555555555544455555555555
Q ss_pred EEEcccCcCccccChh-hhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccc
Q 037792 266 IMDISHNRLNGSIPAC-ITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR 344 (558)
Q Consensus 266 ~L~l~~n~l~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (558)
+|++++|.+.+.+|.. +..++... .+ .+..+.
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~----------------------------------------------~L-~l~~n~ 361 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLR----------------------------------------------EL-DLSHDD 361 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCC----------------------------------------------EE-ECCSSC
T ss_pred EEECCCCCcccccchhhhhccCcCC----------------------------------------------EE-ECCCCc
Confidence 5555555554333321 22211100 00 001111
Q ss_pred cccc-----cchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchh-hhhccccCCeEeCCCCcccccC
Q 037792 345 YESY-----KGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQI 418 (558)
Q Consensus 345 ~~~~-----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~i~~~~ 418 (558)
.... .-..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+.+..
T Consensus 362 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 441 (606)
T 3t6q_A 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441 (606)
T ss_dssp CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC
T ss_pred cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC
Confidence 1000 001278999999999999988888999999999999999999877654 4899999999999999999888
Q ss_pred chhcccCCCCCEEecCCCCCcCC-CCC---CcccCCCCcccccCCCCCC
Q 037792 419 PPQLTELHSLSTFDVSYNNLSGP-IPD---KEQFSTFDESSYRGNLFLC 463 (558)
Q Consensus 419 ~~~l~~l~~L~~L~l~~N~l~~~-~p~---~~~~~~l~~~~~~~N~~~C 463 (558)
|..+..+++|++|++++|++++. +|. ...++.++.+++++|...-
T Consensus 442 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 99999999999999999999863 222 4566788889999887643
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.5e-41 Score=365.55 Aligned_cols=412 Identities=19% Similarity=0.158 Sum_probs=288.0
Q ss_pred CCcC-CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCC
Q 037792 4 TSAQ-HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF 82 (558)
Q Consensus 4 ~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 82 (558)
++.+ +++++|||++|.++ .+|...|.++++|++|+|++|.|+++.+.+|.++++|++|+|++|+++ .+|...|.+++
T Consensus 47 P~~lp~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~ 124 (635)
T 4g8a_A 47 PDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLS 124 (635)
T ss_dssp CSSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCT
T ss_pred CCCCCcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCC
Confidence 4444 47899999999998 788777777999999999999999887888999999999999999998 78877788999
Q ss_pred CCCEEEccCCccCccCchhhcCCCccCeeeccccccccc-cchhhcCCCCCCEEEccCCcCCCCCcccccCCCC----Cc
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK-IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFST----LQ 157 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----L~ 157 (558)
+|++|++++|++++..+..|+++++|++|++++|.++.. .+..+..+++|++|++++|++++..+..+..+.+ ..
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence 999999999999877667789999999999999998753 5677888999999999999888766665544322 22
Q ss_pred EEEcccCcCcccchhh------------------------hcCCc-----------------------------------
Q 037792 158 ILSMSKNLLEGNIPVQ------------------------FNNLA----------------------------------- 178 (558)
Q Consensus 158 ~L~L~~n~l~~~~~~~------------------------~~~l~----------------------------------- 178 (558)
.++++.|.+....+.. +..+.
T Consensus 205 ~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred hhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence 4445444443211111 11111
Q ss_pred ----------------------ccceeeccccccccccCCCcCCCCccEEEccCCcCcccch------------------
Q 037792 179 ----------------------SLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIP------------------ 218 (558)
Q Consensus 179 ----------------------~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~------------------ 218 (558)
+++.+.+.++.+..... ......++.|++.+|.+....+
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC
T ss_pred hhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccchhhhhhhcccccccCcCcccchhhhhcccccccCCC
Confidence 11222222222111110 0123345555555554432211
Q ss_pred -hhhhCCCCCcEEEcCCC-------------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccCh-hhh
Q 037792 219 -NTFFRGSALETLDLRIN-------------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPA-CIT 283 (558)
Q Consensus 219 -~~~~~~~~L~~L~l~~n-------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~ 283 (558)
.....+++|+.++++.| ...+++.+++..+.... .+..+..+++|+.+++..+......+. .+.
T Consensus 364 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 442 (635)
T 4g8a_A 364 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 442 (635)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred Ccccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccc
Confidence 11234566777777766 23566777777666553 344567778888888887766543332 222
Q ss_pred cccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeeccccccccc---chhhcccCEEE
Q 037792 284 NMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYK---GDILELMAGLD 360 (558)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~L~~L~ 360 (558)
.+..... .....+...... ...++.++.|+
T Consensus 443 ~l~~l~~-----------------------------------------------l~ls~n~l~~~~~~~~~~~~~L~~L~ 475 (635)
T 4g8a_A 443 SLRNLIY-----------------------------------------------LDISHTHTRVAFNGIFNGLSSLEVLK 475 (635)
T ss_dssp TCTTCCE-----------------------------------------------EECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred ccccccc-----------------------------------------------ccccccccccccccccccchhhhhhh
Confidence 2211100 000000000000 01168899999
Q ss_pred ccCCCC-CCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCc
Q 037792 361 LSNNEL-TGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439 (558)
Q Consensus 361 Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~ 439 (558)
+++|.+ .+..|..|..+++|++|+|++|++++..|..|+++++|++|+|++|+|++..|..|..+++|++|++++|+++
T Consensus 476 Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 555 (635)
T 4g8a_A 476 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555 (635)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCC
T ss_pred hhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCC
Confidence 999985 4457888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-Cccc-CCCCcccccCCCCCCCCC
Q 037792 440 GPIPD-KEQF-STFDESSYRGNLFLCGPA 466 (558)
Q Consensus 440 ~~~p~-~~~~-~~l~~~~~~~N~~~C~~~ 466 (558)
+..|. ...+ ++++.+++++|||.|+|.
T Consensus 556 ~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 556 TSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp BCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 98887 3333 678999999999999995
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-41 Score=357.94 Aligned_cols=401 Identities=20% Similarity=0.211 Sum_probs=273.7
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEE
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 87 (558)
++|++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEE
T ss_pred ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEE
Confidence 67888888888887 555555555888888888888888777778888888888888888887 67764 67888888
Q ss_pred EccCCccCc-cCchhhcCCCccCeeeccccccccccchhhcCCCCC--CEEEccCCcC--CCCCcccccC----------
Q 037792 88 DLSNNNFVG-QIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTEL--MVLDISNNRL--SGHIPSWMGN---------- 152 (558)
Q Consensus 88 ~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~---------- 152 (558)
++++|.+.+ ..|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 888888876 356778888888888888888764 345566666 8888888877 5555554444
Q ss_pred ----------------CCCCcEEEcccCc-------CcccchhhhcCCcccceeeccccccccccCCCc----CCCCccE
Q 037792 153 ----------------FSTLQILSMSKNL-------LEGNIPVQFNNLASLQILNISENNLSGSMISTL----NLSSVEH 205 (558)
Q Consensus 153 ----------------l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~~~L~~ 205 (558)
+++|+.+++++|. +.+..+ .+..+++|+.|++++|.+.+...... ..++|++
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 4555666666654 333333 45555666666666555543211111 2346777
Q ss_pred EEccCCcCcccchhhh-----hCCCCCcEEEcCCCCC-------------CCcCEEEccCCcCCCCchhhccCCCCCCEE
Q 037792 206 LYLQNNALGGSIPNTF-----FRGSALETLDLRINEH-------------SNLRTLLLRGNYLQGPIPHQLCHLRKLGIM 267 (558)
Q Consensus 206 L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~~-------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 267 (558)
|++++|.+.+.+|..+ ..++.|+.++++.|.+ .+|+.|++++|.+.... ....+++|++|
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 329 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL 329 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence 7777777776666666 6666666666666543 34666666666654321 12455666666
Q ss_pred EcccCcCccccChhhhccccc---ccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccc
Q 037792 268 DISHNRLNGSIPACITNMLFS---RVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR 344 (558)
Q Consensus 268 ~l~~n~l~~~~p~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (558)
++++|++++..|..+.+++.. .+..+.+.+......
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~----------------------------------------- 368 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE----------------------------------------- 368 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH-----------------------------------------
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCccccchH-----------------------------------------
Confidence 666666665555544433211 111111000000000
Q ss_pred cccccchhhcccCEEEccCCCCCCCCCc-cccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcc
Q 037792 345 YESYKGDILELMAGLDLSNNELTGDIPS-EIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLT 423 (558)
Q Consensus 345 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~ 423 (558)
.+ ..+++|+.|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+.
T Consensus 369 --~~--~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~ 441 (520)
T 2z7x_B 369 --MT--TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV 441 (520)
T ss_dssp --HH--TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred --HH--hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence 00 0178999999999999975554 488899999999999999988777665 79999999999999 6777777
Q ss_pred cCCCCCEEecCCCCCcCCCCC-CcccCCCCcccccCCCCCCCCCC
Q 037792 424 ELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPAI 467 (558)
Q Consensus 424 ~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~~~ 467 (558)
.+++|++|++++|+++...+. ...++.++.+++++||+.|+|+.
T Consensus 442 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 999999999999999954443 55678899999999999999953
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.4e-41 Score=359.15 Aligned_cols=399 Identities=19% Similarity=0.176 Sum_probs=294.7
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCE
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEW 86 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 86 (558)
.++|++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|.++ .++...+.++++|++
T Consensus 25 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 25 TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKY 102 (549)
T ss_dssp CTTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCE
T ss_pred CCCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcE
Confidence 368999999999998 454444456999999999999999888889999999999999999999 566666689999999
Q ss_pred EEccCCccCcc-CchhhcCCCccCeeeccccc-cccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccC
Q 037792 87 LDLSNNNFVGQ-IFPNYMNLTRLWALYLYNNN-FSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164 (558)
Q Consensus 87 L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 164 (558)
|++++|.+.+. .+..+.++++|++|++++|. +....+..+.++++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 99999999863 45688999999999999998 44444468899999999999999999888999999999999999999
Q ss_pred cCcccchhhhcCCcccceeeccccccccccC---CCc-CCCCccEEEccCCcCcccchhh--------------------
Q 037792 165 LLEGNIPVQFNNLASLQILNISENNLSGSMI---STL-NLSSVEHLYLQNNALGGSIPNT-------------------- 220 (558)
Q Consensus 165 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~-~~~~L~~L~l~~n~l~~~~~~~-------------------- 220 (558)
.+.......+..+++|+.|++++|.+.+... ... .+++|+.|++++|.+++..+..
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 8874333334678899999999998877421 111 3455555555555443211111
Q ss_pred -------------------------------------------hhCCCCCcEEEcCCC-----------CCCCcCEEEcc
Q 037792 221 -------------------------------------------FFRGSALETLDLRIN-----------EHSNLRTLLLR 246 (558)
Q Consensus 221 -------------------------------------------~~~~~~L~~L~l~~n-----------~~~~L~~L~l~ 246 (558)
+...++|+.|++++| .+++|++|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence 112245666666665 25778888888
Q ss_pred CCcCCCCchh---hccCCCCCCEEEcccCcCccccC--hhhhccc---ccccccCccccccchhhhcccccccCcccchh
Q 037792 247 GNYLQGPIPH---QLCHLRKLGIMDISHNRLNGSIP--ACITNML---FSRVENGYLYGFDIVLRMYLDDAYVSNYYNST 318 (558)
Q Consensus 247 ~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (558)
+|.+++..|. .+..+++|+.|++++|++++..+ ..+..++ ...+..+.+
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l----------------------- 399 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF----------------------- 399 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC-----------------------
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC-----------------------
Confidence 8888866543 36778888888888888864321 2232221 111111111
Q ss_pred hhhhccCCCccccccceeeeeecccccccccc--hhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchh
Q 037792 319 VELLLDGNDGRMLGALVAVNFMTKNRYESYKG--DILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPE 396 (558)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 396 (558)
..++. ..+++|++|++++|.++ .+|..+ .++|++|++++|++++.+
T Consensus 400 ---------------------------~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~-- 447 (549)
T 2z81_A 400 ---------------------------HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS-- 447 (549)
T ss_dssp ---------------------------CCCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC--
T ss_pred ---------------------------ccCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc--
Confidence 11110 01678888999988887 334333 268889999999888643
Q ss_pred hhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC-CcccCCCCcccccCCCCCCCCC
Q 037792 397 SFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 397 ~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
..+++|++|++++|+++ .+|. ...+++|++|++++|++++.+|. ...++.++.+++++||+.|+|+
T Consensus 448 --~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 --LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp --CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred --ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 57889999999999998 5555 45789999999999999987776 5677888999999999999986
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.3e-41 Score=365.08 Aligned_cols=443 Identities=22% Similarity=0.256 Sum_probs=277.4
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEE
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 87 (558)
+++++|++++|.++ .+|...+..+++|++|++++|.+++..|.+|+++++|++|++++|.++ .+|...+.++++|++|
T Consensus 25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEE
Confidence 67888888888888 566665556888888888888888888888888888888888888888 6776666788888888
Q ss_pred EccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCccccc--CCCCCcEEEcccCc
Q 037792 88 DLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG--NFSTLQILSMSKNL 165 (558)
Q Consensus 88 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~ 165 (558)
++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|+.|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 8888888776667788888888888888888877777777888888888888888766665443 44677777777777
Q ss_pred CcccchhhhcCC---------------------------cccceeeccccccccccCCCc-CC--CCccEEEccCCcCcc
Q 037792 166 LEGNIPVQFNNL---------------------------ASLQILNISENNLSGSMISTL-NL--SSVEHLYLQNNALGG 215 (558)
Q Consensus 166 l~~~~~~~~~~l---------------------------~~L~~L~L~~n~i~~~~~~~~-~~--~~L~~L~l~~n~l~~ 215 (558)
+.+..+..+..+ ++|+.|++++|.+.+..+..+ .+ ++|++|++++|.+++
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 765555544433 234444444554444433333 22 235555555555555
Q ss_pred cchhhhhCCCCCcEEEcCCC-----------CCCCcCEEEccCCcCCC-----Cch----hhccCCCCCCEEEcccCcCc
Q 037792 216 SIPNTFFRGSALETLDLRIN-----------EHSNLRTLLLRGNYLQG-----PIP----HQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 216 ~~~~~~~~~~~L~~L~l~~n-----------~~~~L~~L~l~~n~l~~-----~~~----~~~~~l~~L~~L~l~~n~l~ 275 (558)
..+..+..+++|+.|++++| .+++|+.|++++|...+ .+| ..+..+++|++|++++|+++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 55555555555555555555 23445555555443321 111 13445555555555555555
Q ss_pred cccChhhhcccc---cccccCccccccc------------hhhhcccccccCcccchhhhhhccCCCccccccceeeeee
Q 037792 276 GSIPACITNMLF---SRVENGYLYGFDI------------VLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFM 340 (558)
Q Consensus 276 ~~~p~~~~~l~~---~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (558)
+..+..+.+++. ..+..+.+.+... .....+.......... ... ...+....+. +
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~-------~~~--~~l~~L~~L~-L 412 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES-------DAF--SWLGHLEVLD-L 412 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT-------TTT--TTCTTCCEEE-C
T ss_pred CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh-------hhh--hCCCCCCEEe-C
Confidence 444443433221 1111111000000 0000001100000000 000 0000111111 1
Q ss_pred cccccc-cccc---hhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCC--ccchhhhhccccCCeEeCCCCcc
Q 037792 341 TKNRYE-SYKG---DILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLS--GSIPESFSNLKMIESLDLSHNKL 414 (558)
Q Consensus 341 ~~~~~~-~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~i 414 (558)
..+... .++. ..+++|+.|++++|.+.+..+..|..+++|++|++++|.++ +..|..|.++++|+.|++++|++
T Consensus 413 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l 492 (680)
T 1ziw_A 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492 (680)
T ss_dssp CSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred CCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCC
Confidence 111111 1111 12677888888888888777788888888888888888876 45778889999999999999999
Q ss_pred cccCchhcccCCCCCEEecCCCCCcCCCC---------CCcccCCCCcccccCCCCC
Q 037792 415 NGQIPPQLTELHSLSTFDVSYNNLSGPIP---------DKEQFSTFDESSYRGNLFL 462 (558)
Q Consensus 415 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~p---------~~~~~~~l~~~~~~~N~~~ 462 (558)
++..+..|..+++|++|++++|++++..+ ....++.++.+++++|...
T Consensus 493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 549 (680)
T 1ziw_A 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred CcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence 98888888999999999999999986421 1345677888888888765
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-41 Score=364.66 Aligned_cols=399 Identities=19% Similarity=0.158 Sum_probs=320.1
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
-++++.+++.++ .+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.++ .+++..+.++++|++|++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred CCceEccCCCcc-cCCCCCC---CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeEC
Confidence 468999999999 9998764 68999999999999888889999999999999999999 565555689999999999
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCC-CCcccccCCCCCcEEEcccCcCcc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSG-HIPSWMGNFSTLQILSMSKNLLEG 168 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~ 168 (558)
++|.+.+..|..|.++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+
T Consensus 88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 9999998889999999999999999999998777889999999999999999986 569999999999999999999987
Q ss_pred cchhhhcCCcccc----eeeccccccccccCCCcC---------------------------------------------
Q 037792 169 NIPVQFNNLASLQ----ILNISENNLSGSMISTLN--------------------------------------------- 199 (558)
Q Consensus 169 ~~~~~~~~l~~L~----~L~L~~n~i~~~~~~~~~--------------------------------------------- 199 (558)
..+..++.+++|+ .|++++|.++..+...+.
T Consensus 168 ~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred cChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 7777666555443 466666655544433332
Q ss_pred ----------------------------------------------------------CCCccEEEccCCcCcccchhhh
Q 037792 200 ----------------------------------------------------------LSSVEHLYLQNNALGGSIPNTF 221 (558)
Q Consensus 200 ----------------------------------------------------------~~~L~~L~l~~n~l~~~~~~~~ 221 (558)
+++|++|++++|.+ +.+| .+
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~ 325 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL 325 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC
T ss_pred cccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC
Confidence 23444455555544 2344 22
Q ss_pred hCCCCCcEEEcCCC---------CCCCcCEEEccCCcCCCC--chhhccCCCCCCEEEcccCcCccccChhhhccccc--
Q 037792 222 FRGSALETLDLRIN---------EHSNLRTLLLRGNYLQGP--IPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFS-- 288 (558)
Q Consensus 222 ~~~~~L~~L~l~~n---------~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~-- 288 (558)
.+++|+.|++++| .+++|++|++++|.+++. .+..+..+++|++|++++|.+++ +|..+..++..
T Consensus 326 -~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH 403 (606)
T ss_dssp -CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCE
T ss_pred -CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCe
Confidence 5666777777766 567899999999998865 37889999999999999999874 44444443211
Q ss_pred -ccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCC
Q 037792 289 -RVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELT 367 (558)
Q Consensus 289 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 367 (558)
.+..+.+.+... ...+ ..+++|+.|++++|.+.
T Consensus 404 L~l~~n~l~~~~~--------------------------------------------~~~~--~~l~~L~~L~l~~n~l~ 437 (606)
T 3vq2_A 404 LDFQHSTLKRVTE--------------------------------------------FSAF--LSLEKLLYLDISYTNTK 437 (606)
T ss_dssp EECTTSEEESTTT--------------------------------------------TTTT--TTCTTCCEEECTTSCCE
T ss_pred eECCCCccCCccC--------------------------------------------hhhh--hccccCCEEECcCCCCC
Confidence 111111100000 0001 11789999999999999
Q ss_pred CCCCccccCccCCCeeeccCCcCCc-cchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC-C
Q 037792 368 GDIPSEIGDLQNIHGLNLSHNFLSG-SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD-K 445 (558)
Q Consensus 368 ~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~ 445 (558)
+..|..+..+++|++|++++|.+++ .+|..|+.+++|++|++++|.+++..|..+..+++|++|++++|++++.+|. .
T Consensus 438 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 517 (606)
T 3vq2_A 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517 (606)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHc
Confidence 8899999999999999999999997 4788999999999999999999999999999999999999999999988776 5
Q ss_pred cccCCCCcccccCCCCCC
Q 037792 446 EQFSTFDESSYRGNLFLC 463 (558)
Q Consensus 446 ~~~~~l~~~~~~~N~~~C 463 (558)
..++.++.+++++|....
T Consensus 518 ~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 518 NQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp TTCTTCCEEECTTSCCCC
T ss_pred cCCCcCCEEECCCCcCcc
Confidence 667889999999998763
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-41 Score=370.54 Aligned_cols=363 Identities=19% Similarity=0.251 Sum_probs=297.1
Q ss_pred CChhhhhcCCCccEEEccCCcCCC-----------------CCchhhh--CCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 24 LPQNMGIVLPKLVYMNISKNSFEG-----------------NIPSSIG--KMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 24 ~p~~~~~~l~~L~~L~Ls~n~i~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
+|..+.. +++|++|+|++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+ .++++|
T Consensus 440 IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPEL 517 (876)
T ss_dssp ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSC
T ss_pred hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCC
Confidence 7776665 8999999999999997 3788877 99999999999999988888665 789999
Q ss_pred CEEEccCCc-cCc-cCchhhcCCC-------ccCeeeccccccccccch--hhcCCCCCCEEEccCCcCCCCCcccccCC
Q 037792 85 EWLDLSNNN-FVG-QIFPNYMNLT-------RLWALYLYNNNFSGKIKD--GLLRSTELMVLDISNNRLSGHIPSWMGNF 153 (558)
Q Consensus 85 ~~L~l~~n~-i~~-~~~~~~~~l~-------~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 153 (558)
++|++++|+ +++ .+|..+.+++ +|++|++++|.++ .+|. .+.++++|+.|++++|.++ .+| .++.+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence 999999998 877 6777666555 9999999999998 6777 8999999999999999999 777 78999
Q ss_pred CCCcEEEcccCcCcccchhhhcCCcc-cceeeccccccccccCCCcCC--CCccEEEccCCcCcccchhh---hh--CCC
Q 037792 154 STLQILSMSKNLLEGNIPVQFNNLAS-LQILNISENNLSGSMISTLNL--SSVEHLYLQNNALGGSIPNT---FF--RGS 225 (558)
Q Consensus 154 ~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~i~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~---~~--~~~ 225 (558)
++|+.|++++|.+. .+|..+..+++ |+.|++++|.+...+..+... ++|+.|++++|.+.+.+|.. +. .++
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 99999999999998 78888999998 999999999998665443333 45999999999998765532 22 345
Q ss_pred CCcEEEcCCC-----------CCCCcCEEEccCCcCCCCchhh-ccC-------CCCCCEEEcccCcCccccChhhh--c
Q 037792 226 ALETLDLRIN-----------EHSNLRTLLLRGNYLQGPIPHQ-LCH-------LRKLGIMDISHNRLNGSIPACIT--N 284 (558)
Q Consensus 226 ~L~~L~l~~n-----------~~~~L~~L~l~~n~l~~~~~~~-~~~-------l~~L~~L~l~~n~l~~~~p~~~~--~ 284 (558)
+|+.|++++| .+++|+.|++++|.++ .+|.. +.. +++|+.|++++|+++ .+|..+. .
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 8999999998 4578999999999998 44444 332 239999999999998 6666553 2
Q ss_pred ccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCC
Q 037792 285 MLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNN 364 (558)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 364 (558)
+++|+.|++++|
T Consensus 752 --------------------------------------------------------------------l~~L~~L~Ls~N 763 (876)
T 4ecn_A 752 --------------------------------------------------------------------LPYLSNMDVSYN 763 (876)
T ss_dssp --------------------------------------------------------------------CTTCCEEECCSS
T ss_pred --------------------------------------------------------------------CCCcCEEEeCCC
Confidence 789999999999
Q ss_pred CCCCCCCccccCccCCCeeeccC------CcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCC
Q 037792 365 ELTGDIPSEIGDLQNIHGLNLSH------NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNL 438 (558)
Q Consensus 365 ~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l 438 (558)
.+++ +|..+..+++|+.|+|++ |.+.+.+|..|..+++|+.|+|++|.+ +.+|..+. ++|+.|++++|++
T Consensus 764 ~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 764 CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred CCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 9996 788899999999999976 888889999999999999999999999 57777765 6999999999999
Q ss_pred cCCCCC-CcccCCCCcccccCCCCCC--CCC
Q 037792 439 SGPIPD-KEQFSTFDESSYRGNLFLC--GPA 466 (558)
Q Consensus 439 ~~~~p~-~~~~~~l~~~~~~~N~~~C--~~~ 466 (558)
....+. ...........+.+|+..+ +|+
T Consensus 840 ~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 840 ISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp CEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred CccChHHccccccchheeecCCCccccCCCC
Confidence 864443 1112233445566666655 664
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-41 Score=358.89 Aligned_cols=390 Identities=19% Similarity=0.199 Sum_probs=300.9
Q ss_pred CCCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCC
Q 037792 3 LTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF 82 (558)
Q Consensus 3 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 82 (558)
.+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|.++ .++...+.+++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~ 124 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLK 124 (570)
T ss_dssp TTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCT
T ss_pred HhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccc
Confidence 3678999999999999998 677666667999999999999999888889999999999999999998 56654468899
Q ss_pred CCCEEEccCCccCc-cCchhhcCCCccCeeeccccccccccchhhcCCCCC----CEEEccCCcCCCC------------
Q 037792 83 SLEWLDLSNNNFVG-QIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTEL----MVLDISNNRLSGH------------ 145 (558)
Q Consensus 83 ~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L----~~L~L~~n~l~~~------------ 145 (558)
+|++|++++|.+.+ ..|..+.++++|++|++++|.+++..+..+..+++| +.+++++|.+.+.
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~ 204 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence 99999999999886 358889999999999999999887766666666666 6677766655432
Q ss_pred ---------------------------------------------------------------------CcccccCCCCC
Q 037792 146 ---------------------------------------------------------------------IPSWMGNFSTL 156 (558)
Q Consensus 146 ---------------------------------------------------------------------~~~~~~~l~~L 156 (558)
.|..+..+++|
T Consensus 205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 23344556788
Q ss_pred cEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC-
Q 037792 157 QILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN- 235 (558)
Q Consensus 157 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n- 235 (558)
+.|++++|.+. .+|..+..+ +|+.|++++|.+...+. ..+++|++|++++|.+.+..+. ..+++|+.|++++|
T Consensus 285 ~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 285 SSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG 358 (570)
T ss_dssp SEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC
T ss_pred cEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc
Confidence 89999998887 567777777 89999999998875544 2567777888877777654443 56677777777776
Q ss_pred ------------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccC-hhhhcccc---cccccCcccccc
Q 037792 236 ------------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP-ACITNMLF---SRVENGYLYGFD 299 (558)
Q Consensus 236 ------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~---~~~~~~~~~~~~ 299 (558)
.+++|++|++++|.+.+..+. +..+++|+.|++++|++.+..| ..+.+++. ..+..+.+.+..
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred cCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence 246777777777777754443 7777777777777777765544 23333221 111111000000
Q ss_pred chhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCC-CCCCccccCcc
Q 037792 300 IVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELT-GDIPSEIGDLQ 378 (558)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~ 378 (558)
. ..+ ..+++|++|++++|.+. +.+|..+..++
T Consensus 438 ~---------------------------------------------~~~--~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 438 N---------------------------------------------GIF--NGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp T---------------------------------------------TTT--TTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred h---------------------------------------------hhh--hcCCcCcEEECcCCcCccccchhhhhccc
Confidence 0 000 01789999999999997 56888999999
Q ss_pred CCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCccc
Q 037792 379 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQF 448 (558)
Q Consensus 379 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~ 448 (558)
+|++|++++|++++..|..|..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..+.+
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 9999999999999888999999999999999999999988889999999999999999999999985544
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.3e-40 Score=350.01 Aligned_cols=378 Identities=21% Similarity=0.251 Sum_probs=245.9
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCE
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEW 86 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 86 (558)
+...+++|+++|.++ .+|..++ ++|++|++++|.+++..+.+|.++++|++|++++|.++ .+++..+.++++|++
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCE
Confidence 334467777777777 6776553 57777777777777666667777777777777777777 444444466777777
Q ss_pred EEccCCccCccCchhhcCCCccCeeeccccccccc-cchhhcCCCCCCEEEccCCcCCCCCcccccCCCCC--cEEEccc
Q 037792 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK-IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTL--QILSMSK 163 (558)
Q Consensus 87 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~ 163 (558)
|++++|+++. +|.. .+++|++|++++|.+++. .|..+.++++|++|++++|.++.. .+.++++| +.|++++
T Consensus 105 L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred EECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 7777777763 3333 677777777777777653 346677777777777777776642 23344444 7777777
Q ss_pred CcC--cccchhhhcC--------------------------Ccccceeeccccc--------------------------
Q 037792 164 NLL--EGNIPVQFNN--------------------------LASLQILNISENN-------------------------- 189 (558)
Q Consensus 164 n~l--~~~~~~~~~~--------------------------l~~L~~L~L~~n~-------------------------- 189 (558)
|.+ .+..|..+.. +++|+.+++++|.
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 766 4343333332 3344444444432
Q ss_pred --ccccc----CCCcCCCCccEEEccCCcCcccchhhh-----hCCC--------------------------CCcEEEc
Q 037792 190 --LSGSM----ISTLNLSSVEHLYLQNNALGGSIPNTF-----FRGS--------------------------ALETLDL 232 (558)
Q Consensus 190 --i~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~--------------------------~L~~L~l 232 (558)
+.+.. ......++|++|++++|.+++.+|..+ ..++ +|+.|++
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 11100 000123477777777777776666554 3333 3444444
Q ss_pred CCC---------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccc--cChhhhcccccccccCccccccch
Q 037792 233 RIN---------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGS--IPACITNMLFSRVENGYLYGFDIV 301 (558)
Q Consensus 233 ~~n---------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~~~~~~~~~~~~~~~ 301 (558)
++| .+++|++|++++|.+++..|..+..+++|++|++++|++++. +|..+.+
T Consensus 339 ~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~----------------- 401 (562)
T 3a79_B 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN----------------- 401 (562)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-----------------
T ss_pred cCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC-----------------
Confidence 443 234555566666655555555555556666666666555421 1111111
Q ss_pred hhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCC-ccccCccCC
Q 037792 302 LRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIP-SEIGDLQNI 380 (558)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L 380 (558)
+++|+.|++++|.+++.+| ..+..+++|
T Consensus 402 ---------------------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 402 ---------------------------------------------------MSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp ---------------------------------------------------CTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred ---------------------------------------------------CCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 7889999999999997455 458889999
Q ss_pred CeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC-CcccCCCCcccccCC
Q 037792 381 HGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGN 459 (558)
Q Consensus 381 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~N 459 (558)
++|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++...+. ...++.++.+++++|
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 9999999999877776554 79999999999999 5666666999999999999999954444 566788899999999
Q ss_pred CCCCCCC
Q 037792 460 LFLCGPA 466 (558)
Q Consensus 460 ~~~C~~~ 466 (558)
|+.|+|+
T Consensus 508 ~~~c~c~ 514 (562)
T 3a79_B 508 PWDCTCP 514 (562)
T ss_dssp CBCCCHH
T ss_pred CcCCCcc
Confidence 9999985
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.1e-39 Score=333.87 Aligned_cols=359 Identities=20% Similarity=0.263 Sum_probs=297.1
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccC-chhhcCCCccCeeec
Q 037792 35 LVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQI-FPNYMNLTRLWALYL 113 (558)
Q Consensus 35 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l 113 (558)
-+.++.+++.++ .+|. + .++|++|++++|.++ .+++..+.++++|++|++++|.+.+.+ +..|.++++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 456788888887 4565 2 378999999999999 454444589999999999999987444 567999999999999
Q ss_pred cccccccccchhhcCCCCCCEEEccCCcCCCCCccc--ccCCCCCcEEEcccCcCcccchhh-hcCCcccceeecccccc
Q 037792 114 YNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW--MGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISENNL 190 (558)
Q Consensus 114 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i 190 (558)
++|.+++..+..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999888999999999999999999998755544 889999999999999999777766 88999999999999999
Q ss_pred ccccCCCc---CCCCccEEEccCCcCcccchhh--------hhCCCCCcEEEcCCCCC--------------CCcCEEEc
Q 037792 191 SGSMISTL---NLSSVEHLYLQNNALGGSIPNT--------FFRGSALETLDLRINEH--------------SNLRTLLL 245 (558)
Q Consensus 191 ~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~--------~~~~~~L~~L~l~~n~~--------------~~L~~L~l 245 (558)
.+..+..+ ...+++.|++++|.+.+..+.. +..+++|+.|++++|.+ ++++.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 98776655 3378999999999998654433 23456788888887743 67777777
Q ss_pred cCCcCCCCc----------hhhcc--CCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCc
Q 037792 246 RGNYLQGPI----------PHQLC--HLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSN 313 (558)
Q Consensus 246 ~~n~l~~~~----------~~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (558)
++|...+.. +..+. ..++|+.|++++|++++..|..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----------------------------- 297 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH----------------------------- 297 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-----------------------------
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc-----------------------------
Confidence 777544221 11111 2357778888887777655555543
Q ss_pred ccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCcc
Q 037792 314 YYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGS 393 (558)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 393 (558)
+++|+.|++++|.+.+..|..|..+++|++|++++|.+++.
T Consensus 298 ---------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 338 (455)
T 3v47_A 298 ---------------------------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338 (455)
T ss_dssp ---------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ---------------------------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc
Confidence 78899999999999988899999999999999999999988
Q ss_pred chhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC-CcccCCCCcccccCCCCCCCCC
Q 037792 394 IPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 394 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
.|..|+++++|++|++++|++++..|..+..+++|++|++++|++++..+. ...++.++.+++++||+.|+|+
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 899999999999999999999999999999999999999999999976554 3677899999999999999997
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-39 Score=340.03 Aligned_cols=381 Identities=19% Similarity=0.198 Sum_probs=286.6
Q ss_pred CCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCc-cchHHHHhcCC
Q 037792 4 TSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAG-ELSQSLVINCF 82 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~ 82 (558)
+.++++|++|++++|.++ .++...+..+++|++|++++|.++ .+|.. .+++|++|++++|.+++ .+|.. +.+++
T Consensus 41 ~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~ 115 (520)
T 2z7x_B 41 ILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMS 115 (520)
T ss_dssp HTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCT
T ss_pred ccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhh-hccCC
Confidence 468899999999999999 554444456999999999999999 45655 89999999999999985 35555 48899
Q ss_pred CCCEEEccCCccCccCchhhcCCCcc--Ceeecccccc--ccccchhhcC--------------------------CCCC
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRL--WALYLYNNNF--SGKIKDGLLR--------------------------STEL 132 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L--~~L~l~~n~i--~~~~~~~~~~--------------------------l~~L 132 (558)
+|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+.. +++|
T Consensus 116 ~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L 192 (520)
T 2z7x_B 116 QLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192 (520)
T ss_dssp TCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEE
T ss_pred cceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccce
Confidence 99999999999975 457777888 9999999998 5555555544 5677
Q ss_pred CEEEccCCc-------CCCCCcccccCCCCCcEEEcccCcCcccchhhhc---CCcccceeecccccccc-ccCCC----
Q 037792 133 MVLDISNNR-------LSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFN---NLASLQILNISENNLSG-SMIST---- 197 (558)
Q Consensus 133 ~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~i~~-~~~~~---- 197 (558)
+.+++++|. +.+..| .+..+++|+.|++++|.+.+..+..+. ..++|++|++++|.+.+ .+...
T Consensus 193 ~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 271 (520)
T 2z7x_B 193 ELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271 (520)
T ss_dssp EECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCC
T ss_pred eeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcc
Confidence 777777775 443444 577888999999998887654332221 24589999999998884 44444
Q ss_pred -cCCCCccEEEccCCcCcccch-hhhhCC---CCCcEEEcCCC---------CCCCcCEEEccCCcCCCCchhhccCCCC
Q 037792 198 -LNLSSVEHLYLQNNALGGSIP-NTFFRG---SALETLDLRIN---------EHSNLRTLLLRGNYLQGPIPHQLCHLRK 263 (558)
Q Consensus 198 -~~~~~L~~L~l~~n~l~~~~~-~~~~~~---~~L~~L~l~~n---------~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 263 (558)
..+++|+.+++++|.+ .+| ..+... .+|+.|++++| .+++|++|++++|.+++..|..+..+++
T Consensus 272 ~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 349 (520)
T 2z7x_B 272 GTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349 (520)
T ss_dssp SCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSS
T ss_pred cccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCC
Confidence 4678888888888887 344 344333 67888888776 3567888888888888878888888888
Q ss_pred CCEEEcccCcCcc--ccChhhhccccc---ccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeee
Q 037792 264 LGIMDISHNRLNG--SIPACITNMLFS---RVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVN 338 (558)
Q Consensus 264 L~~L~l~~n~l~~--~~p~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (558)
|++|++++|++++ .+|..+..++.. .+..+.+.+. +..
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------l~~---------------------- 392 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD---------------EKK---------------------- 392 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC---------------GGG----------------------
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc---------------ccc----------------------
Confidence 8888888888875 445555543321 1111111110 000
Q ss_pred eecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccC
Q 037792 339 FMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418 (558)
Q Consensus 339 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~ 418 (558)
..+ ..+++|+.|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++...
T Consensus 393 -------~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 393 -------GDC--SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP 460 (520)
T ss_dssp -------CSC--CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred -------chh--ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccC
Confidence 000 0168899999999999877766554 79999999999999 67777779999999999999999655
Q ss_pred chhcccCCCCCEEecCCCCCcCCCCC
Q 037792 419 PPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 419 ~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
+..+..+++|++|++++|+++|.++.
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred HHHhccCCcccEEECcCCCCcccCCc
Confidence 44589999999999999999998775
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.9e-39 Score=344.63 Aligned_cols=385 Identities=21% Similarity=0.210 Sum_probs=287.4
Q ss_pred CCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCcc-chHHHHhcCC
Q 037792 4 TSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGE-LSQSLVINCF 82 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~ 82 (558)
+.++++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|+++++|++|++++|.+++. .|. .+.+++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~ 123 (549)
T 2z81_A 46 LRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLT 123 (549)
T ss_dssp TSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCT
T ss_pred hhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccC
Confidence 678899999999999998 55555555699999999999999988888899999999999999999842 333 357899
Q ss_pred CCCEEEccCCccCccC-chhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEc
Q 037792 83 SLEWLDLSNNNFVGQI-FPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSM 161 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 161 (558)
+|++|++++|...+.+ +..+.++++|++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence 9999999999844334 457899999999999999998878888877777777777777665322222344666666666
Q ss_pred ccCcCccc---------------------------ch----hhhcCCcccceeeccccccccccCCC-------------
Q 037792 162 SKNLLEGN---------------------------IP----VQFNNLASLQILNISENNLSGSMIST------------- 197 (558)
Q Consensus 162 ~~n~l~~~---------------------------~~----~~~~~l~~L~~L~L~~n~i~~~~~~~------------- 197 (558)
++|.+.+. .+ ..+..+++|+.+++++|.+.+.....
T Consensus 204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 66666532 11 11233445555555555543321000
Q ss_pred ----------------------c-CCCCccEEEccCCcCcccchhhh-hCCCCCcEEEcCCCC--------------CCC
Q 037792 198 ----------------------L-NLSSVEHLYLQNNALGGSIPNTF-FRGSALETLDLRINE--------------HSN 239 (558)
Q Consensus 198 ----------------------~-~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~--------------~~~ 239 (558)
. ..++|+.|++++|.+. .+|..+ ..+++|+.|++++|. +++
T Consensus 284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred ccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence 0 1357999999999987 556555 579999999999883 468
Q ss_pred cCEEEccCCcCCCCch--hhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccch
Q 037792 240 LRTLLLRGNYLQGPIP--HQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNS 317 (558)
Q Consensus 240 L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (558)
|++|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..++...
T Consensus 363 L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~---------------------------- 413 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR---------------------------- 413 (549)
T ss_dssp CCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCC----------------------------
T ss_pred CcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccccc----------------------------
Confidence 9999999999986543 56899999999999999998 5666544322110
Q ss_pred hhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhh
Q 037792 318 TVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPES 397 (558)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 397 (558)
...+..+.+..+++...++|++|++++|++++.. ..+++|++|++++|+++ .+|.
T Consensus 414 -------------------~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~- 468 (549)
T 2z81_A 414 -------------------FLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD- 468 (549)
T ss_dssp -------------------EEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-
T ss_pred -------------------EEECCCCCcccccchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-
Confidence 1112222233333333578999999999998643 57899999999999999 5665
Q ss_pred hhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCC
Q 037792 398 FSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDK 445 (558)
Q Consensus 398 ~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~ 445 (558)
...+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..
T Consensus 469 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 469 ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence 467999999999999999999999999999999999999999988853
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=331.84 Aligned_cols=346 Identities=17% Similarity=0.166 Sum_probs=247.5
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
-+.++.+++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++ .+++..+.++++|++|++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEEC
Confidence 367899999998 8998764 58999999999999888889999999999999999998 454445588999999999
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
++|.+....+..|.++++|++|++++|.+....+..+.++++|++|++++|.+.+..+..|.++++|+.|++++|.+.+.
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 99999876666788999999999999999888888899999999999999999888888899999999999999999877
Q ss_pred chhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCC
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGN 248 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n 248 (558)
.+..+..+++|+.|++++|.+.+.....+ .+++|++|++++|...+.++..... ..+|++|++++|
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------------~~~L~~L~l~~n 234 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-------------GLNLTSLSITHC 234 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-------------TCCCSEEEEESS
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-------------CccccEEECcCC
Confidence 77788888999999999988887766555 6777888888777665444433222 124455555555
Q ss_pred cCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCc
Q 037792 249 YLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDG 328 (558)
Q Consensus 249 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (558)
.+++..+..+..+++|+.|++++|+++
T Consensus 235 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~----------------------------------------------------- 261 (477)
T 2id5_A 235 NLTAVPYLAVRHLVYLRFLNLSYNPIS----------------------------------------------------- 261 (477)
T ss_dssp CCCSCCHHHHTTCTTCCEEECCSSCCC-----------------------------------------------------
T ss_pred cccccCHHHhcCccccCeeECCCCcCC-----------------------------------------------------
Confidence 555444445555555555555555554
Q ss_pred cccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEe
Q 037792 329 RMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLD 408 (558)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 408 (558)
+..+..|..+++|++|+|++|++++..|..|.++++|+.|+
T Consensus 262 ---------------------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 262 ---------------------------------------TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp ---------------------------------------EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred ---------------------------------------ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEE
Confidence 33444455555555555555555555555555555555555
Q ss_pred CCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCCcccccCCCCCCCC
Q 037792 409 LSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 409 Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~ 465 (558)
+++|.++...+..|..+++|+.|++++|++.|.++..+.+.......+.++...|..
T Consensus 303 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~ 359 (477)
T 2id5_A 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCAT 359 (477)
T ss_dssp CCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEE
T ss_pred CCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCC
Confidence 555555555555555555566666666666555444333333333444555555544
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.6e-38 Score=332.29 Aligned_cols=358 Identities=23% Similarity=0.211 Sum_probs=277.8
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCE
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEW 86 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 86 (558)
.++|++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|.. .+++|++
T Consensus 51 ~~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~ 125 (562)
T 3a79_B 51 PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRH 125 (562)
T ss_dssp CTTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSE
T ss_pred CCCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCE
Confidence 378999999999999 677656666999999999999999888999999999999999999999 78875 7999999
Q ss_pred EEccCCccCcc-CchhhcCCCccCeeeccccccccccchhhcCCCCC--CEEEccCCcC--CCCCcccccC---------
Q 037792 87 LDLSNNNFVGQ-IFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTEL--MVLDISNNRL--SGHIPSWMGN--------- 152 (558)
Q Consensus 87 L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~--------- 152 (558)
|++++|.+.+. .|..|.++++|++|++++|.+... .+..+++| ++|++++|.+ ++..|..+..
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~ 202 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEE
Confidence 99999999874 357999999999999999999764 34555555 9999999998 6666655544
Q ss_pred -----------------CCCCcEEEcccCcC----------------------------cc----cchhhhcCCccccee
Q 037792 153 -----------------FSTLQILSMSKNLL----------------------------EG----NIPVQFNNLASLQIL 183 (558)
Q Consensus 153 -----------------l~~L~~L~L~~n~l----------------------------~~----~~~~~~~~l~~L~~L 183 (558)
+++|+.+++++|+. .+ ..+.. ...++|++|
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L 281 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYL 281 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEE
Confidence 33556666665531 10 00111 112367777
Q ss_pred eccccccccccC-CCc-----C--------------------------CCCccEEEccCCcCcccchhhhhCCCCCcEEE
Q 037792 184 NISENNLSGSMI-STL-----N--------------------------LSSVEHLYLQNNALGGSIPNTFFRGSALETLD 231 (558)
Q Consensus 184 ~L~~n~i~~~~~-~~~-----~--------------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 231 (558)
++++|.+.+..+ ..+ . ..+|++|++++|.+.... ....+++|+.|+
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 359 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLN 359 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEE
Confidence 888777764322 221 1 134667777776664321 115678889999
Q ss_pred cCCC-----------CCCCcCEEEccCCcCCCC--chhhccCCCCCCEEEcccCcCccccChh-hhcccccccccCcccc
Q 037792 232 LRIN-----------EHSNLRTLLLRGNYLQGP--IPHQLCHLRKLGIMDISHNRLNGSIPAC-ITNMLFSRVENGYLYG 297 (558)
Q Consensus 232 l~~n-----------~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~~~~~~~~~~~ 297 (558)
+++| .+++|++|++++|.+++. .|..+..+++|++|++++|++++.+|.. +..
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~------------- 426 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW------------- 426 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC-------------
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC-------------
Confidence 8887 357899999999999863 4567999999999999999998655543 221
Q ss_pred ccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCc
Q 037792 298 FDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDL 377 (558)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 377 (558)
+++|+.|++++|.+++..|..+.
T Consensus 427 -------------------------------------------------------l~~L~~L~l~~n~l~~~~~~~l~-- 449 (562)
T 3a79_B 427 -------------------------------------------------------AESILVLNLSSNMLTGSVFRCLP-- 449 (562)
T ss_dssp -------------------------------------------------------CTTCCEEECCSSCCCGGGGSSCC--
T ss_pred -------------------------------------------------------cccCCEEECCCCCCCcchhhhhc--
Confidence 68899999999999876665443
Q ss_pred cCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCc
Q 037792 378 QNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKE 446 (558)
Q Consensus 378 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~ 446 (558)
++|++|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|++.|.+|..+
T Consensus 450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 517 (562)
T 3a79_B 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517 (562)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHH
T ss_pred CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHH
Confidence 79999999999999 567666799999999999999995544459999999999999999999888643
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.3e-37 Score=333.25 Aligned_cols=396 Identities=20% Similarity=0.196 Sum_probs=292.9
Q ss_pred CCCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCC
Q 037792 3 LTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF 82 (558)
Q Consensus 3 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 82 (558)
.|.++++|++|+|++|.++ .+|+..|..+++|++|+|++|++++..+.+|.++++|++|++++|+++ .++...+.+++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~ 148 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLK 148 (635)
T ss_dssp TTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCT
T ss_pred HHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCc
Confidence 3788999999999999999 888888888999999999999999877788999999999999999999 67777678999
Q ss_pred CCCEEEccCCccCcc-CchhhcCCCccCeeeccccccccccchhhcCCCC----CCEEEccCCcCCCCCcccc-------
Q 037792 83 SLEWLDLSNNNFVGQ-IFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTE----LMVLDISNNRLSGHIPSWM------- 150 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~----L~~L~L~~n~l~~~~~~~~------- 150 (558)
+|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+.+ ...++++.|.+....+..+
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~ 228 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 228 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhh
Confidence 999999999999764 5678899999999999999998776665544332 2345555554432211111
Q ss_pred --------------------------------------------------------------------------cCCCCC
Q 037792 151 --------------------------------------------------------------------------GNFSTL 156 (558)
Q Consensus 151 --------------------------------------------------------------------------~~l~~L 156 (558)
..+.++
T Consensus 229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 308 (635)
T 4g8a_A 229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV 308 (635)
T ss_dssp EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence 111222
Q ss_pred cEEEcccCcCcccchhhhcCCcccceeeccccccccccC--------------------CCcCCCCccEEEccCCcCcc-
Q 037792 157 QILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMI--------------------STLNLSSVEHLYLQNNALGG- 215 (558)
Q Consensus 157 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--------------------~~~~~~~L~~L~l~~n~l~~- 215 (558)
+.+++.++.+... ..+....+++.|++.+|.+..... ....+++|+.|++++|.+..
T Consensus 309 ~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~ 386 (635)
T 4g8a_A 309 SSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 386 (635)
T ss_dssp SEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred ccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccc
Confidence 3333333332211 123344556666666665443221 12257889999999998853
Q ss_pred -cchhhhhCCCCCcEEEcCCC----------CCCCcCEEEccCCcCCCCc-hhhccCCCCCCEEEcccCcCccccChhhh
Q 037792 216 -SIPNTFFRGSALETLDLRIN----------EHSNLRTLLLRGNYLQGPI-PHQLCHLRKLGIMDISHNRLNGSIPACIT 283 (558)
Q Consensus 216 -~~~~~~~~~~~L~~L~l~~n----------~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 283 (558)
..+..+....+|+.+++..+ .+++|+.+++..+...... +..+..+++++.++++.|.+.+..+..+.
T Consensus 387 ~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~ 466 (635)
T 4g8a_A 387 GCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 466 (635)
T ss_dssp EECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred cccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc
Confidence 35667778889999998877 5678999999888765443 35678889999999999998876666554
Q ss_pred cccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccC
Q 037792 284 NMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSN 363 (558)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 363 (558)
.++....- .+..... .....-..+ ..+++|++|++++
T Consensus 467 ~~~~L~~L-------------~Ls~N~~----------------------------~~~~~~~~~--~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 467 GLSSLEVL-------------KMAGNSF----------------------------QENFLPDIF--TELRNLTFLDLSQ 503 (635)
T ss_dssp TCTTCCEE-------------ECTTCEE----------------------------GGGEECSCC--TTCTTCCEEECTT
T ss_pred cchhhhhh-------------hhhhccc----------------------------ccccCchhh--hhccccCEEECCC
Confidence 43211110 0000000 000000001 1178999999999
Q ss_pred CCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccC-CCCCEEecCCCCCcCCC
Q 037792 364 NELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL-HSLSTFDVSYNNLSGPI 442 (558)
Q Consensus 364 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l-~~L~~L~l~~N~l~~~~ 442 (558)
|++++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|+|++..|..+..+ ++|++|++++|+++|.|
T Consensus 504 N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999988 68999999999999988
Q ss_pred CCC
Q 037792 443 PDK 445 (558)
Q Consensus 443 p~~ 445 (558)
...
T Consensus 584 ~~~ 586 (635)
T 4g8a_A 584 EHQ 586 (635)
T ss_dssp GGH
T ss_pred CcH
Confidence 753
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.5e-36 Score=310.75 Aligned_cols=248 Identities=25% Similarity=0.283 Sum_probs=186.4
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCC
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLE 85 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 85 (558)
.+++++.|+++++.+. .+|. + ..+++|++|++++|.+++..+ +.++++|++|++++|.++ .++. +.++++|+
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~-~-~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG-V-EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCC
T ss_pred HhccccEEecCCCCCc-cCcc-h-hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCC
Confidence 3678999999999998 7875 3 348999999999999986544 899999999999999998 4554 68899999
Q ss_pred EEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCc
Q 037792 86 WLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNL 165 (558)
Q Consensus 86 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 165 (558)
+|++++|.+.+.. .+.++++|++|++++|.+.+. ..+..+++|++|+++ |.+.+.. .+.++++|+.|++++|.
T Consensus 116 ~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 116 GLTLFNNQITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK 188 (466)
T ss_dssp EEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCCh--HHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence 9999999998643 389999999999999998753 358889999999997 4455332 38899999999999999
Q ss_pred CcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC---------C
Q 037792 166 LEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN---------E 236 (558)
Q Consensus 166 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n---------~ 236 (558)
+.+. ..+..+++|+.|++++|.+.+..+ ...+++|++|++++|.+++. ..+..+++|+.|++++| .
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~ 263 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSG 263 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTT
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhc
Confidence 8844 347889999999999999887655 33688999999999998753 34566666666665555 2
Q ss_pred CCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCc
Q 037792 237 HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 237 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 275 (558)
+++|++|++++|.+++..+ +..+++|+.|++++|+++
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~ 300 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCccc
Confidence 3344444444444443222 444444444444444443
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.6e-37 Score=319.60 Aligned_cols=322 Identities=20% Similarity=0.176 Sum_probs=261.2
Q ss_pred CEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccC
Q 037792 60 RLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISN 139 (558)
Q Consensus 60 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 139 (558)
+.++.+++.++ .+|..+ .++++.|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 46667666666 666543 35677788888777776667778888888888888888777777788888888888888
Q ss_pred CcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccch
Q 037792 140 NRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIP 218 (558)
Q Consensus 140 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~ 218 (558)
|.++...+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+....+..+ .+++|++|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 88886666677888888888888888887777788888888888888888887766555 78889999999988887666
Q ss_pred hhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccc
Q 037792 219 NTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGF 298 (558)
Q Consensus 219 ~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~ 298 (558)
..+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|+..+.+|.....
T Consensus 170 ~~l~~l-------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------------- 222 (477)
T 2id5_A 170 EALSHL-------------HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-------------- 222 (477)
T ss_dssp HHHTTC-------------TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT--------------
T ss_pred hHhccc-------------CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc--------------
Confidence 667654 55566666677777777778899999999999998876555543322
Q ss_pred cchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCcc
Q 037792 299 DIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQ 378 (558)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 378 (558)
..+|+.|++++|.+++..+..+..++
T Consensus 223 ------------------------------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 223 ------------------------------------------------------GLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp ------------------------------------------------------TCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred ------------------------------------------------------CccccEEECcCCcccccCHHHhcCcc
Confidence 45799999999999965557889999
Q ss_pred CCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC-CcccCCCCccccc
Q 037792 379 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYR 457 (558)
Q Consensus 379 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~ 457 (558)
+|++|+|++|.+++..+..|.++++|+.|+|++|.+++..|..|..+++|+.|++++|++++..+. ...++.++.++++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 999999999999988888899999999999999999999999999999999999999999976554 3556789999999
Q ss_pred CCCCCCCCC
Q 037792 458 GNLFLCGPA 466 (558)
Q Consensus 458 ~N~~~C~~~ 466 (558)
+||+.|+|.
T Consensus 329 ~N~l~c~c~ 337 (477)
T 2id5_A 329 SNPLACDCR 337 (477)
T ss_dssp SSCEECSGG
T ss_pred CCCccCccc
Confidence 999999985
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.4e-36 Score=303.72 Aligned_cols=335 Identities=21% Similarity=0.198 Sum_probs=225.0
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
++++++|++++|.++...+..+.++++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 466777777777766544445666777777777777766 4444444666777777777777666556666677777777
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccc
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 191 (558)
++++|.++...+..+.++++|++|++++|.+.+..+..+.++++|+.|++++|.+.+. .+..+++|+.|++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 7777776654444456667777777777777666666666677777777777766643 2445566677777766665
Q ss_pred cccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEccc
Q 037792 192 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISH 271 (558)
Q Consensus 192 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 271 (558)
... ..++|++|++++|.+... +.. ..++|+.|++++|.+++. ..+..+++|++|++++
T Consensus 200 ~~~----~~~~L~~L~l~~n~l~~~-~~~---------------~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~ 257 (390)
T 3o6n_A 200 TLA----IPIAVEELDASHNSINVV-RGP---------------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSY 257 (390)
T ss_dssp EEE----CCSSCSEEECCSSCCCEE-ECC---------------CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred ccC----CCCcceEEECCCCeeeec-ccc---------------ccccccEEECCCCCCccc--HHHcCCCCccEEECCC
Confidence 432 234566777776666532 211 135677777777777753 4677888888888888
Q ss_pred CcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccch
Q 037792 272 NRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGD 351 (558)
Q Consensus 272 n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (558)
|++++..|..+..
T Consensus 258 n~l~~~~~~~~~~------------------------------------------------------------------- 270 (390)
T 3o6n_A 258 NELEKIMYHPFVK------------------------------------------------------------------- 270 (390)
T ss_dssp SCCCEEESGGGTT-------------------------------------------------------------------
T ss_pred CcCCCcChhHccc-------------------------------------------------------------------
Confidence 8887665655544
Q ss_pred hhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEE
Q 037792 352 ILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTF 431 (558)
Q Consensus 352 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L 431 (558)
+++|+.|++++|.+++ ++..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.++... +..+++|+.|
T Consensus 271 -l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L 344 (390)
T 3o6n_A 271 -MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNL 344 (390)
T ss_dssp -CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEE
T ss_pred -cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEE
Confidence 6778888888888874 4555667888888888888887 45666778888888888888887542 5667788888
Q ss_pred ecCCCCCcCCCCCCcccCCCCcccccCCCCCCCCC
Q 037792 432 DVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 432 ~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
++++|++.+... ...+..+....+.+++..|.++
T Consensus 345 ~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 345 TLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp ECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCTT
T ss_pred EcCCCCccchhH-HHHHHHHHhhcccccCceeccc
Confidence 888888886432 2344555666667777777653
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7e-35 Score=302.43 Aligned_cols=337 Identities=25% Similarity=0.347 Sum_probs=275.8
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
+++++.|+++++.++. +| .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+..+ +.++++|++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 5689999999999984 44 4889999999999999999 5565 6899999999999999986544 9999999999
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccc
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 191 (558)
++++|.+++..+ +..+++|++|++++|.+.+ .+ .+..+++|+.|+++ |.+.+.. .+..+++|+.|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 999999986533 8899999999999999985 34 48899999999997 4454332 3889999999999999988
Q ss_pred cccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCC---------CCCcCEEEccCCcCCCCchhhccCCC
Q 037792 192 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE---------HSNLRTLLLRGNYLQGPIPHQLCHLR 262 (558)
Q Consensus 192 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~---------~~~L~~L~l~~n~l~~~~~~~~~~l~ 262 (558)
... ....+++|++|++++|.+.+..+ +..+++|+.|++++|. +++|+.|++++|.+++..+ +..++
T Consensus 191 ~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 265 (466)
T 1o6v_A 191 DIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLT 265 (466)
T ss_dssp CCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred CCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCC
Confidence 753 23478999999999999986655 6778899999999883 5688999999998886554 78888
Q ss_pred CCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecc
Q 037792 263 KLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTK 342 (558)
Q Consensus 263 ~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (558)
+|+.|++++|++++..+ +..
T Consensus 266 ~L~~L~l~~n~l~~~~~--~~~---------------------------------------------------------- 285 (466)
T 1o6v_A 266 KLTELKLGANQISNISP--LAG---------------------------------------------------------- 285 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTT----------------------------------------------------------
T ss_pred CCCEEECCCCccCcccc--ccC----------------------------------------------------------
Confidence 99999999998864322 222
Q ss_pred cccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhc
Q 037792 343 NRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL 422 (558)
Q Consensus 343 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l 422 (558)
+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..| +..+++|+.|++++|.+++. ..+
T Consensus 286 ----------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l 349 (466)
T 1o6v_A 286 ----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSL 349 (466)
T ss_dssp ----------CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGG
T ss_pred ----------CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhh
Confidence 6778888888888885433 7788888888888888887665 67888888888888888854 467
Q ss_pred ccCCCCCEEecCCCCCcCCCCCCcccCCCCcccccCCCCCCC
Q 037792 423 TELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCG 464 (558)
Q Consensus 423 ~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~ 464 (558)
..+++|+.|++++|++++..| ...++.++.+++++|++..-
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp TTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECC
T ss_pred ccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCC
Confidence 788888888888888887776 56667788888888887653
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.4e-35 Score=311.84 Aligned_cols=334 Identities=21% Similarity=0.188 Sum_probs=225.4
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
+++++.+++++|.++...+..+.++++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..|.++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456666666666666554455666666666666666666 3443334566666666666666665555556666666666
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccc
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 191 (558)
++++|.++...+..|..+++|++|++++|.+++..|..|.++++|+.|++++|.+.+.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 66666666544444566666666666666666665656666666666666666665432 344556666666666655
Q ss_pred cccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEccc
Q 037792 192 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISH 271 (558)
Q Consensus 192 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 271 (558)
+.. ..++|+.|++++|.+....+ . ..++|+.|++++|.+++ +..+..+++|+.|++++
T Consensus 206 ~l~----~~~~L~~L~ls~n~l~~~~~-~---------------~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 206 TLA----IPIAVEELDASHNSINVVRG-P---------------VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSY 263 (597)
T ss_dssp EEE----CCTTCSEEECCSSCCCEEEC-S---------------CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCS
T ss_pred ccc----CCchhheeeccCCccccccc-c---------------cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCC
Confidence 432 23456666666666542211 1 13567888888888875 36788889999999999
Q ss_pred CcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccch
Q 037792 272 NRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGD 351 (558)
Q Consensus 272 n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (558)
|.+++..|..+..
T Consensus 264 N~l~~~~~~~~~~------------------------------------------------------------------- 276 (597)
T 3oja_B 264 NELEKIMYHPFVK------------------------------------------------------------------- 276 (597)
T ss_dssp SCCCEEESGGGTT-------------------------------------------------------------------
T ss_pred CccCCCCHHHhcC-------------------------------------------------------------------
Confidence 9888777766654
Q ss_pred hhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEE
Q 037792 352 ILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTF 431 (558)
Q Consensus 352 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L 431 (558)
+++|+.|++++|.+++ +|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++... +..+++|+.|
T Consensus 277 -l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L 350 (597)
T 3oja_B 277 -MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNL 350 (597)
T ss_dssp -CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEE
T ss_pred -ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEE
Confidence 6788889999998885 4666677889999999999988 56777888899999999999988543 5667889999
Q ss_pred ecCCCCCcCCCCCCcccCCCCcccccCCCCCCCC
Q 037792 432 DVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 432 ~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~ 465 (558)
++++|+++|.+.. ..+..+....+.+++..|+.
T Consensus 351 ~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 351 TLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp ECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred EeeCCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence 9999998875432 34555666667777777765
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.3e-35 Score=300.47 Aligned_cols=336 Identities=18% Similarity=0.143 Sum_probs=248.9
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
.++++|++|++++|.++ .+| .+. .+++|++|++++|.+++. | ++.+++|++|++++|.++ .++ +..+++|
T Consensus 39 ~~l~~L~~L~Ls~n~l~-~~~-~l~-~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~---~~~l~~L 108 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSIT-DMT-GIE-KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD---VTPLTKL 108 (457)
T ss_dssp HHHTTCCEEECCSSCCC-CCT-TGG-GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC---CTTCTTC
T ss_pred hHcCCCCEEEccCCCcc-cCh-hhc-ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee---cCCCCcC
Confidence 45789999999999998 566 444 489999999999999864 3 888999999999999998 454 5789999
Q ss_pred CEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccC
Q 037792 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 164 (558)
++|++++|++++. + +..+++|++|++++|.+++. .+..+++|++|++++|...+.+ .+..+++|+.|++++|
T Consensus 109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 9999999998863 3 88899999999999998864 2677888999999888554444 3677888888888888
Q ss_pred cCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCC--------
Q 037792 165 LLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE-------- 236 (558)
Q Consensus 165 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-------- 236 (558)
.+++ +| +..+++|+.|++++|.+++.. ...+++|++|++++|++++ +| +..+++|+.|++++|.
T Consensus 181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~ 252 (457)
T 3bz5_A 181 KITE-LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVST 252 (457)
T ss_dssp CCCC-CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTT
T ss_pred ccce-ec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHH
Confidence 8885 34 777888888888888887752 3367888888888888876 44 5666667777766662
Q ss_pred CCCcC----------EEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcc
Q 037792 237 HSNLR----------TLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYL 306 (558)
Q Consensus 237 ~~~L~----------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 306 (558)
+++|+ .|++++|.+.+.+| +..+++|+.|++++|+..+.+|....++...
T Consensus 253 l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L------------------ 312 (457)
T 3bz5_A 253 LSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL------------------ 312 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC------------------
T ss_pred CCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe------------------
Confidence 23333 34444444333333 3456677777777776655544322111100
Q ss_pred cccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeecc
Q 037792 307 DDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLS 386 (558)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 386 (558)
.-..+++|+.|++++|++++. + +..+++|++|+++
T Consensus 313 ------------------------------------------~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~ 347 (457)
T 3bz5_A 313 ------------------------------------------DLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCV 347 (457)
T ss_dssp ------------------------------------------CCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECC
T ss_pred ------------------------------------------chhhcccCCEEECCCCccccc-c--cccCCcCcEEECC
Confidence 001157889999999999874 3 8889999999999
Q ss_pred CCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC
Q 037792 387 HNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 387 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
+|++++ ++.|+.|++++|.+.+. ..+..|..+++++|+++|.+|.
T Consensus 348 ~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 348 NAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp SSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred CCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 999985 25677778888988865 3456788899999999999986
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-34 Score=293.29 Aligned_cols=334 Identities=21% Similarity=0.203 Sum_probs=276.9
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCC
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLE 85 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 85 (558)
.+++++.|+++++.+. .+|..++..+++|++|++++|.+++..+.+|.++++|++|++++|.++ .+++..+.++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence 5689999999999998 899998888999999999999999888889999999999999999999 56666668999999
Q ss_pred EEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCc
Q 037792 86 WLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNL 165 (558)
Q Consensus 86 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 165 (558)
+|++++|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 999999999966555679999999999999999988888899999999999999999864 35678999999999998
Q ss_pred CcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEc
Q 037792 166 LEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLL 245 (558)
Q Consensus 166 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l 245 (558)
+.+. ...++|+.|++++|.+...+... .++|+.|++++|.+++. ..+.. +++|++|++
T Consensus 198 l~~~-----~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~-------------l~~L~~L~L 255 (390)
T 3o6n_A 198 LSTL-----AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLN-------------YPGLVEVDL 255 (390)
T ss_dssp CSEE-----ECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGG-------------CTTCSEEEC
T ss_pred cccc-----CCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcC-------------CCCccEEEC
Confidence 8742 34568999999999998875544 47999999999999853 34443 567777888
Q ss_pred cCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccC
Q 037792 246 RGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDG 325 (558)
Q Consensus 246 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (558)
++|.+++..|..+..+++|++|++++|++++ +|..+..
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~----------------------------------------- 293 (390)
T 3o6n_A 256 SYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP----------------------------------------- 293 (390)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSC-----------------------------------------
T ss_pred CCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCC-----------------------------------------
Confidence 8888888888999999999999999999873 2221111
Q ss_pred CCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCC
Q 037792 326 NDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 405 (558)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 405 (558)
+++|+.|++++|.+. .+|..+..+++|++|++++|++++. + +..+++|+
T Consensus 294 ---------------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~ 342 (390)
T 3o6n_A 294 ---------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK 342 (390)
T ss_dssp ---------------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred ---------------------------CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCC
Confidence 688999999999999 6677788999999999999999865 3 67889999
Q ss_pred eEeCCCCcccccCchhcccCCCCCEEecCCCCCcCC
Q 037792 406 SLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGP 441 (558)
Q Consensus 406 ~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~ 441 (558)
.|++++|.+.+.....+ +..+....+..+...+.
T Consensus 343 ~L~l~~N~~~~~~~~~~--~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 343 NLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCK 376 (390)
T ss_dssp EEECCSSCEEHHHHHHH--TTTCCTTTBCCCCSCCC
T ss_pred EEEcCCCCccchhHHHH--HHHHHhhcccccCceec
Confidence 99999999986433322 23344444455554443
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.3e-35 Score=303.49 Aligned_cols=383 Identities=22% Similarity=0.283 Sum_probs=199.1
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCC-------------CEEEcccccCCcc
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGL-------------RLLDVSSNNFAGE 72 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~ 72 (558)
+.++|++|++++|.+ |.+|..+.. +++|++|++++|.+++..|..++++.+| ++|++++|.++ .
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~-L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~ 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-S 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-C
T ss_pred ccccchhhhcccCch-hhCChhHhc-ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-c
Confidence 467899999999999 599988865 8999999999999988889888887764 88888888888 4
Q ss_pred chHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccC
Q 037792 73 LSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGN 152 (558)
Q Consensus 73 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 152 (558)
+|. ..++|++|++++|.+++ +|.. .++|++|++++|.+++. +.. .++|++|++++|.+++ +| .+++
T Consensus 86 lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~ 151 (454)
T 1jl5_A 86 LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQN 151 (454)
T ss_dssp CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCC
Confidence 554 24678888888888876 4432 36777777777777642 211 2577777777777774 55 4777
Q ss_pred CCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEc
Q 037792 153 FSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDL 232 (558)
Q Consensus 153 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 232 (558)
+++|++|++++|++.+ +|.. .++|++|++++|.+++.+ .+..+++|++|++++|.+++ +|.. .++|+.|++
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 7777777777777763 3432 246777777777777643 33367777777777777664 2321 146666666
Q ss_pred CCC---------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhh
Q 037792 233 RIN---------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLR 303 (558)
Q Consensus 233 ~~n---------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 303 (558)
++| .+++|++|++++|.+++ +|. ..++|+.|++++|++++ +|....++....+..+.+.+.+..
T Consensus 223 ~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~~l~~~-- 295 (454)
T 1jl5_A 223 GNNILEELPELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSEL-- 295 (454)
T ss_dssp CSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSEESCC--
T ss_pred cCCcCCcccccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcccCcCCEEECcCCccCcccCc--
Confidence 666 24556677777776664 232 23566777777776653 443333333333222222211000
Q ss_pred hcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCee
Q 037792 304 MYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGL 383 (558)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 383 (558)
... ...-.+..+....++. ..++|+.|++++|++++ +|.. +++|++|
T Consensus 296 -----------~~~-----------------L~~L~l~~N~l~~i~~-~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L 342 (454)
T 1jl5_A 296 -----------PPN-----------------LYYLNASSNEIRSLCD-LPPSLEELNVSNNKLIE-LPAL---PPRLERL 342 (454)
T ss_dssp -----------CTT-----------------CCEEECCSSCCSEECC-CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred -----------CCc-----------------CCEEECcCCcCCcccC-CcCcCCEEECCCCcccc-cccc---CCcCCEE
Confidence 000 0000111111111111 12467778888877774 4443 4777788
Q ss_pred eccCCcCCccchhhhhccccCCeEeCCCCcccc--cCchhcccC-------------CCCCEEecCCCCCcC--CCCCCc
Q 037792 384 NLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG--QIPPQLTEL-------------HSLSTFDVSYNNLSG--PIPDKE 446 (558)
Q Consensus 384 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~l~~l-------------~~L~~L~l~~N~l~~--~~p~~~ 446 (558)
++++|.+++ +|. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|
T Consensus 343 ~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP--- 415 (454)
T 1jl5_A 343 IASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP--- 415 (454)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------------
T ss_pred ECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch---
Confidence 888887773 444 36777888888888776 566666666 677777777777776 344
Q ss_pred ccCCCCcccccCCCCCC
Q 037792 447 QFSTFDESSYRGNLFLC 463 (558)
Q Consensus 447 ~~~~l~~~~~~~N~~~C 463 (558)
.++..+.+.+|.+.|
T Consensus 416 --~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 416 --ESVEDLRMNSERVVD 430 (454)
T ss_dssp -----------------
T ss_pred --hhHhheeCcCcccCC
Confidence 334455555555444
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.3e-33 Score=279.82 Aligned_cols=304 Identities=21% Similarity=0.319 Sum_probs=234.0
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
+++|++|+++++.+... + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+. +.+.++++|++|
T Consensus 43 l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 67888888888888743 3 4778888888888888887 5555 57788888888888887752 468888888888
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccc
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 191 (558)
++++|.+....+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 888888875433 7788888888888886554443 37888888888888888874433 778888888888888887
Q ss_pred cccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEccc
Q 037792 192 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISH 271 (558)
Q Consensus 192 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 271 (558)
+... ...+++|+.|++++|.+.+..+ +.. +++|++|++++|.+++..+ +..+++|++|++++
T Consensus 191 ~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~-------------~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 191 DISP-LASLTSLHYFTAYVNQITDITP--VAN-------------MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252 (347)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCCCGG--GGG-------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred cccc-ccCCCccceeecccCCCCCCch--hhc-------------CCcCCEEEccCCccCCCcc--hhcCCCCCEEECCC
Confidence 6554 3377888899988888875443 433 4566666677777775433 88889999999999
Q ss_pred CcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccch
Q 037792 272 NRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGD 351 (558)
Q Consensus 272 n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (558)
|++++. +.+..
T Consensus 253 n~l~~~--~~~~~------------------------------------------------------------------- 263 (347)
T 4fmz_A 253 NQISDI--NAVKD------------------------------------------------------------------- 263 (347)
T ss_dssp SCCCCC--GGGTT-------------------------------------------------------------------
T ss_pred CccCCC--hhHhc-------------------------------------------------------------------
Confidence 988632 11211
Q ss_pred hhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEE
Q 037792 352 ILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTF 431 (558)
Q Consensus 352 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L 431 (558)
+++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..++.+++|++|++++|.+++..| +..+++|++|
T Consensus 264 -l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 338 (347)
T 4fmz_A 264 -LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSA 338 (347)
T ss_dssp -CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEE
T ss_pred -CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcccee
Confidence 67899999999998854 458889999999999999998888999999999999999999987655 7889999999
Q ss_pred ecCCCCCc
Q 037792 432 DVSYNNLS 439 (558)
Q Consensus 432 ~l~~N~l~ 439 (558)
++++|+++
T Consensus 339 ~l~~N~i~ 346 (347)
T 4fmz_A 339 DFANQVIK 346 (347)
T ss_dssp SSSCC---
T ss_pred ehhhhccc
Confidence 99999886
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.5e-33 Score=277.71 Aligned_cols=306 Identities=23% Similarity=0.340 Sum_probs=255.5
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
+.+++|++|+++++.+. .+|. + ..+++|++|++++|.+++..+ +.++++|++|++++|.++ .++. +..+++|
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~~-~-~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L 112 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQG-I-EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNL 112 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTC
T ss_pred hhcccccEEEEeCCccc-cchh-h-hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCcC
Confidence 46789999999999998 7775 3 449999999999999995533 999999999999999998 5653 6889999
Q ss_pred CEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccC
Q 037792 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 164 (558)
++|++++|.+.+..+ +..+++|++|++++|..... ...+..+++|++|++++|.+....+ +..+++|+.|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 999999999986433 89999999999999976544 3448899999999999999985544 889999999999999
Q ss_pred cCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEE
Q 037792 165 LLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLL 244 (558)
Q Consensus 165 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~ 244 (558)
.+.+..+ +..+++|+.|++++|.+.+... ...+++|++|++++|.+++..+ +.. +++|++|+
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~-------------l~~L~~L~ 249 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LAN-------------LSQLTWLE 249 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTT-------------CTTCCEEE
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhc-------------CCCCCEEE
Confidence 9985433 8889999999999999987665 4478999999999999985443 443 46667777
Q ss_pred ccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhcc
Q 037792 245 LRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLD 324 (558)
Q Consensus 245 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (558)
+++|.+++. ..+..+++|++|++++|++++. + .+..
T Consensus 250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~~---------------------------------------- 285 (347)
T 4fmz_A 250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLNN---------------------------------------- 285 (347)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGG----------------------------------------
T ss_pred CCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhcC----------------------------------------
Confidence 777777753 4688999999999999998742 1 1221
Q ss_pred CCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccC
Q 037792 325 GNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMI 404 (558)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 404 (558)
+++|+.|++++|.+++..+..+..+++|++|++++|++++..| +..+++|
T Consensus 286 ----------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 335 (347)
T 4fmz_A 286 ----------------------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335 (347)
T ss_dssp ----------------------------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred ----------------------------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence 7889999999999998888999999999999999999997766 8899999
Q ss_pred CeEeCCCCccc
Q 037792 405 ESLDLSHNKLN 415 (558)
Q Consensus 405 ~~L~Ls~N~i~ 415 (558)
++|++++|.|+
T Consensus 336 ~~L~l~~N~i~ 346 (347)
T 4fmz_A 336 DSADFANQVIK 346 (347)
T ss_dssp SEESSSCC---
T ss_pred ceeehhhhccc
Confidence 99999999986
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-33 Score=300.14 Aligned_cols=313 Identities=21% Similarity=0.220 Sum_probs=270.6
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCC
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLE 85 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 85 (558)
.+.+++.+++++|.+. .+|..++..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+++..+.++++|+
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCC
Confidence 4678999999999998 899998888999999999999999888889999999999999999999 56666678999999
Q ss_pred EEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCc
Q 037792 86 WLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNL 165 (558)
Q Consensus 86 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 165 (558)
+|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++.. +..+++|+.|++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence 9999999999766667899999999999999999888889999999999999999998653 5668899999999998
Q ss_pred CcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEc
Q 037792 166 LEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLL 245 (558)
Q Consensus 166 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l 245 (558)
+.+ +...++|+.|++++|.+...+... .++|+.|++++|.+++. ..+.. +++|+.|++
T Consensus 204 l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~-------------l~~L~~L~L 261 (597)
T 3oja_B 204 LST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLN-------------YPGLVEVDL 261 (597)
T ss_dssp CSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGG-------------CTTCSEEEC
T ss_pred ccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhcc-------------CCCCCEEEC
Confidence 874 344578999999999998776554 37899999999999853 44443 567777888
Q ss_pred cCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccC
Q 037792 246 RGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDG 325 (558)
Q Consensus 246 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (558)
++|.+++..|..+..+++|+.|++++|.+++ +|..+..
T Consensus 262 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~----------------------------------------- 299 (597)
T 3oja_B 262 SYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP----------------------------------------- 299 (597)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSC-----------------------------------------
T ss_pred CCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccccc-----------------------------------------
Confidence 8888988889999999999999999999974 2222111
Q ss_pred CCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCC
Q 037792 326 NDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 405 (558)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 405 (558)
+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++.. +..+++|+
T Consensus 300 ---------------------------l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~ 348 (597)
T 3oja_B 300 ---------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLK 348 (597)
T ss_dssp ---------------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCS
T ss_pred ---------------------------CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCC
Confidence 688999999999999 67778899999999999999998653 67789999
Q ss_pred eEeCCCCcccccC
Q 037792 406 SLDLSHNKLNGQI 418 (558)
Q Consensus 406 ~L~Ls~N~i~~~~ 418 (558)
.|++++|.+.+..
T Consensus 349 ~L~l~~N~~~~~~ 361 (597)
T 3oja_B 349 NLTLSHNDWDCNS 361 (597)
T ss_dssp EEECCSSCEEHHH
T ss_pred EEEeeCCCCCChh
Confidence 9999999998653
No 39
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=4.5e-35 Score=304.03 Aligned_cols=363 Identities=18% Similarity=0.180 Sum_probs=276.5
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCC----CCchhhhCCCCCCEEEcccccCCccchHHHHhcCC
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEG----NIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF 82 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 82 (558)
.++|++||+++|.++......++..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..++..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 46789999999999844444546668999999999999884 34677888999999999999998656666666677
Q ss_pred ----CCCEEEccCCccCc----cCchhhcCCCccCeeeccccccccccchhhc-----CCCCCCEEEccCCcCCCCC---
Q 037792 83 ----SLEWLDLSNNNFVG----QIFPNYMNLTRLWALYLYNNNFSGKIKDGLL-----RSTELMVLDISNNRLSGHI--- 146 (558)
Q Consensus 83 ----~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~--- 146 (558)
+|++|++++|.+.. .++..+..+++|++|++++|.++...+..+. ..++|++|++++|.++...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999885 3477889999999999999998755444332 2568999999999988643
Q ss_pred -cccccCCCCCcEEEcccCcCcccchhhhc-----CCcccceeecccccccccc----CCCc-CCCCccEEEccCCcCcc
Q 037792 147 -PSWMGNFSTLQILSMSKNLLEGNIPVQFN-----NLASLQILNISENNLSGSM----ISTL-NLSSVEHLYLQNNALGG 215 (558)
Q Consensus 147 -~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~i~~~~----~~~~-~~~~L~~L~l~~n~l~~ 215 (558)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.++... +..+ .+++|++|++++|.+.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 55566789999999999998765444443 3568999999999887642 2222 67899999999998875
Q ss_pred cchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCC----chhhccCCCCCCEEEcccCcCccccChhhhcccccccc
Q 037792 216 SIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGP----IPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVE 291 (558)
Q Consensus 216 ~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~ 291 (558)
.....+... + ...+++|++|++++|.+++. ++..+..+++|++|++++|++++..+..+.....
T Consensus 242 ~~~~~l~~~-------~-~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~---- 309 (461)
T 1z7x_W 242 VGMAELCPG-------L-LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL---- 309 (461)
T ss_dssp HHHHHHHHH-------H-TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT----
T ss_pred HHHHHHHHH-------H-hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc----
Confidence 432222110 0 00256778888888888754 5677788999999999999986544433332100
Q ss_pred cCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCC--
Q 037792 292 NGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGD-- 369 (558)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-- 369 (558)
...++|+.|++++|.+++.
T Consensus 310 -----------------------------------------------------------~~~~~L~~L~L~~n~l~~~~~ 330 (461)
T 1z7x_W 310 -----------------------------------------------------------EPGCQLESLWVKSCSFTAACC 330 (461)
T ss_dssp -----------------------------------------------------------STTCCCCEEECTTSCCBGGGH
T ss_pred -----------------------------------------------------------cCCccceeeEcCCCCCchHHH
Confidence 0036899999999999865
Q ss_pred --CCccccCccCCCeeeccCCcCCccchhhhhc-----cccCCeEeCCCCcccc----cCchhcccCCCCCEEecCCCCC
Q 037792 370 --IPSEIGDLQNIHGLNLSHNFLSGSIPESFSN-----LKMIESLDLSHNKLNG----QIPPQLTELHSLSTFDVSYNNL 438 (558)
Q Consensus 370 --~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~i~~----~~~~~l~~l~~L~~L~l~~N~l 438 (558)
++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.++. .+|..+..+++|++|++++|++
T Consensus 331 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred HHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 4556677899999999999998766665543 6799999999999986 6788888899999999999998
Q ss_pred cC
Q 037792 439 SG 440 (558)
Q Consensus 439 ~~ 440 (558)
+.
T Consensus 411 ~~ 412 (461)
T 1z7x_W 411 GD 412 (461)
T ss_dssp CH
T ss_pred CH
Confidence 75
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-32 Score=283.62 Aligned_cols=222 Identities=20% Similarity=0.182 Sum_probs=178.4
Q ss_pred CChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhc
Q 037792 24 LPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM 103 (558)
Q Consensus 24 ~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 103 (558)
.+..+.. +++|++|++++|.+++. | .+..+++|++|++++|.++ .++ +..+++|++|++++|.+++. .+.
T Consensus 34 ~~~~~~~-l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~---~~~ 103 (457)
T 3bz5_A 34 DTISEEQ-LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL---DVT 103 (457)
T ss_dssp SEEEHHH-HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC---CCT
T ss_pred cccChhH-cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee---ecC
Confidence 3444444 89999999999999964 5 7899999999999999998 455 57899999999999999874 288
Q ss_pred CCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCccccee
Q 037792 104 NLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQIL 183 (558)
Q Consensus 104 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 183 (558)
++++|++|++++|.+++. + +..+++|++|++++|++++. + ++.+++|+.|++++|...+.. .+..+++|+.|
T Consensus 104 ~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 999999999999999864 3 78899999999999999964 3 788999999999999654444 47888999999
Q ss_pred eccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCC
Q 037792 184 NISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRK 263 (558)
Q Consensus 184 ~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 263 (558)
++++|.+++.+ ...+++|++|++++|.+++. .+.. +++|+.|++++|.+++ +| +..+++
T Consensus 176 ~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~-------------l~~L~~L~Ls~N~l~~-ip--~~~l~~ 234 (457)
T 3bz5_A 176 DCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQ-------------NIQLTFLDCSSNKLTE-ID--VTPLTQ 234 (457)
T ss_dssp ECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTT-------------CTTCSEEECCSSCCSC-CC--CTTCTT
T ss_pred ECCCCccceec--cccCCCCCEEECcCCcCCee---cccc-------------CCCCCEEECcCCcccc-cC--ccccCC
Confidence 99999998865 44789999999999998854 1333 4666777777777775 34 777888
Q ss_pred CCEEEcccCcCccccChhhhc
Q 037792 264 LGIMDISHNRLNGSIPACITN 284 (558)
Q Consensus 264 L~~L~l~~n~l~~~~p~~~~~ 284 (558)
|+.|++++|++++..+..+.+
T Consensus 235 L~~L~l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 235 LTYFDCSVNPLTELDVSTLSK 255 (457)
T ss_dssp CSEEECCSSCCSCCCCTTCTT
T ss_pred CCEEEeeCCcCCCcCHHHCCC
Confidence 888888888887654444433
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.5e-33 Score=274.70 Aligned_cols=258 Identities=34% Similarity=0.539 Sum_probs=208.6
Q ss_pred CCCCEEEccCCcCCC--CCcccccCCCCCcEEEccc-CcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccE
Q 037792 130 TELMVLDISNNRLSG--HIPSWMGNFSTLQILSMSK-NLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEH 205 (558)
Q Consensus 130 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~ 205 (558)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+..|..+..+++|++|++++|.+++..+..+ .+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 466777777777776 6666777777777777774 66666667777777777777777777765444444 6777777
Q ss_pred EEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCC-CCCEEEcccCcCccccChhhhc
Q 037792 206 LYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLR-KLGIMDISHNRLNGSIPACITN 284 (558)
Q Consensus 206 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~ 284 (558)
|++++|.+++..|..+..+ ++|++|++++|.+++.+|..+..++ +|++|++++|++++.+|..+..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l-------------~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSL-------------PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp EECCSSEEESCCCGGGGGC-------------TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred EeCCCCccCCcCChHHhcC-------------CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 7777777777777776653 4556666666777777788888887 8999999999998777776654
Q ss_pred ccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCC
Q 037792 285 MLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNN 364 (558)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 364 (558)
++ |+.|++++|
T Consensus 197 --------------------------------------------------------------------l~-L~~L~Ls~N 207 (313)
T 1ogq_A 197 --------------------------------------------------------------------LN-LAFVDLSRN 207 (313)
T ss_dssp --------------------------------------------------------------------CC-CSEEECCSS
T ss_pred --------------------------------------------------------------------Cc-ccEEECcCC
Confidence 34 889999999
Q ss_pred CCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC
Q 037792 365 ELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 365 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
.+++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99988899999999999999999999976665 88899999999999999999999999999999999999999999999
Q ss_pred CcccCCCCcccccCCCCCCCCCCCCCC
Q 037792 445 KEQFSTFDESSYRGNLFLCGPAINKGC 471 (558)
Q Consensus 445 ~~~~~~l~~~~~~~N~~~C~~~~~~~c 471 (558)
...++.++.+++.+||+.|+.|.. .|
T Consensus 287 ~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 287 GGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp STTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CccccccChHHhcCCCCccCCCCC-CC
Confidence 888899999999999999998765 35
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.1e-32 Score=283.61 Aligned_cols=363 Identities=20% Similarity=0.232 Sum_probs=233.8
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCC-------------CCEEEccCCccCccC
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFS-------------LEWLDLSNNNFVGQI 98 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-------------L~~L~l~~n~i~~~~ 98 (558)
..+|++|++++|.+ +.+|.+++++++|++|++++|.+++.+|..+ +.+.+ +++|++++|.+++.
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l- 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSL- 86 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccC-
Confidence 57999999999999 6899999999999999999999987788764 45554 59999999998863
Q ss_pred chhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCc
Q 037792 99 FPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLA 178 (558)
Q Consensus 99 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 178 (558)
|. -.++|++|++++|.+++ .|.. +++|++|++++|.+++ ++.. .++|++|++++|.+.+ +| .++.++
T Consensus 87 p~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 87 PE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp CS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred CC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 33 24789999999999986 4543 4899999999999985 3321 2689999999999995 66 599999
Q ss_pred ccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCC-------CCcCEEEccCCcCC
Q 037792 179 SLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEH-------SNLRTLLLRGNYLQ 251 (558)
Q Consensus 179 ~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~-------~~L~~L~l~~n~l~ 251 (558)
+|++|++++|.+++.+.. .++|++|++++|.+++ +| .+..+++|+.|++++|.+ ++|++|++++|.++
T Consensus 154 ~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE 228 (454)
T ss_dssp TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS
T ss_pred CCCEEECCCCcCcccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC
Confidence 999999999999875432 3699999999999986 55 688999999999999954 46999999999998
Q ss_pred CCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCcccc
Q 037792 252 GPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRML 331 (558)
Q Consensus 252 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (558)
.+| .+..+++|++|++++|++++ +|..+.++....+..+.+.+.+.. .
T Consensus 229 -~lp-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~-------------~---------------- 276 (454)
T 1jl5_A 229 -ELP-ELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPEL-------------P---------------- 276 (454)
T ss_dssp -SCC-CCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCC-------------C----------------
T ss_pred -ccc-ccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcc-------------c----------------
Confidence 566 48999999999999999984 554444444333333332221100 0
Q ss_pred ccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCc-cCCCeeeccCCcCCccchhhhhccccCCeEeCC
Q 037792 332 GALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDL-QNIHGLNLSHNFLSGSIPESFSNLKMIESLDLS 410 (558)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 410 (558)
+. .....+..+....++ ...++|+.|++++|.+++ +..+ ++|++|++++|++++ +|.. +++|++|+++
T Consensus 277 ~~-L~~L~ls~N~l~~l~-~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~ 345 (454)
T 1jl5_A 277 QS-LTFLDVSENIFSGLS-ELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIAS 345 (454)
T ss_dssp TT-CCEEECCSSCCSEES-CCCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred Cc-CCEEECcCCccCccc-CcCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECC
Confidence 00 011111222222211 113677888888887773 2223 478888888888875 4433 4778888888
Q ss_pred CCcccccCchhcccCCCCCEEecCCCCCcC--CCCC-Cccc-------------CCCCcccccCCCCC
Q 037792 411 HNKLNGQIPPQLTELHSLSTFDVSYNNLSG--PIPD-KEQF-------------STFDESSYRGNLFL 462 (558)
Q Consensus 411 ~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~--~~p~-~~~~-------------~~l~~~~~~~N~~~ 462 (558)
+|.++. +|. .+++|++|++++|++++ .+|. ...+ +.++.+++++|+..
T Consensus 346 ~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 346 FNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred CCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 888874 444 36788888888888887 4554 2222 45566666666654
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=9.4e-32 Score=266.25 Aligned_cols=266 Identities=23% Similarity=0.288 Sum_probs=147.4
Q ss_pred CCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcc
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMS 162 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 162 (558)
++++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.++ .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 4444444444444333334444444444444444444444444444444444444444444 2222221 445555555
Q ss_pred cCcCcccchhhhcCCcccceeecccccccc--ccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCC
Q 037792 163 KNLLEGNIPVQFNNLASLQILNISENNLSG--SMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSN 239 (558)
Q Consensus 163 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 239 (558)
+|.+.+..+..+..+++|+.|++++|.++. ..+..+ .+ +|++|++++|.+++ +|..+ .++
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~---------------~~~ 194 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL---------------PET 194 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS---------------CSS
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccc---------------cCC
Confidence 555443333444445555555555554432 222222 22 55555555555542 22211 134
Q ss_pred cCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhh
Q 037792 240 LRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTV 319 (558)
Q Consensus 240 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (558)
|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..
T Consensus 195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~----------------------------------- 239 (332)
T 2ft3_A 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF----------------------------------- 239 (332)
T ss_dssp CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-----------------------------------
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-----------------------------------
Confidence 555556666666555566777777777777777776544444433
Q ss_pred hhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhh
Q 037792 320 ELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFS 399 (558)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 399 (558)
+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|.
T Consensus 240 ---------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 240 ---------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp ---------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ---------------------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 566777777777777 5666677778888888888887766666665
Q ss_pred cc------ccCCeEeCCCCccc--ccCchhcccCCCCCEEecCCCC
Q 037792 400 NL------KMIESLDLSHNKLN--GQIPPQLTELHSLSTFDVSYNN 437 (558)
Q Consensus 400 ~l------~~L~~L~Ls~N~i~--~~~~~~l~~l~~L~~L~l~~N~ 437 (558)
.. ++|+.|++++|.+. ...|..|..+++|+.+++++|+
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 43 56788888888876 5677778888888888888774
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2.7e-31 Score=262.78 Aligned_cols=288 Identities=22% Similarity=0.275 Sum_probs=187.8
Q ss_pred CCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEc
Q 037792 58 GLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDI 137 (558)
Q Consensus 58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 137 (558)
++++++++++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4556666666555 455432 245666666666666555555666666666666666666555666666666666666
Q ss_pred cCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecccccccc--ccCCCc-CCCCccEEEccCCcCc
Q 037792 138 SNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSG--SMISTL-NLSSVEHLYLQNNALG 214 (558)
Q Consensus 138 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~-~~~~L~~L~l~~n~l~ 214 (558)
++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+ .+++|++|++++|.++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 666666 3333332 566667777666665556666666677777777666643 222223 5667777777777665
Q ss_pred ccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCc
Q 037792 215 GSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGY 294 (558)
Q Consensus 215 ~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~ 294 (558)
. +|..+ .++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..
T Consensus 185 ~-l~~~~---------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------- 238 (330)
T 1xku_A 185 T-IPQGL---------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN---------- 238 (330)
T ss_dssp S-CCSSC---------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG----------
T ss_pred c-CCccc---------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC----------
Confidence 2 22221 255667777777777666777888888888888888876544444433
Q ss_pred cccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccc
Q 037792 295 LYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEI 374 (558)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 374 (558)
+++|+.|++++|.++ .+|..+
T Consensus 239 ----------------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 239 ----------------------------------------------------------TPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp ----------------------------------------------------------STTCCEEECCSSCCS-SCCTTT
T ss_pred ----------------------------------------------------------CCCCCEEECCCCcCc-cCChhh
Confidence 567888888888887 667778
Q ss_pred cCccCCCeeeccCCcCCccchhhhhcc------ccCCeEeCCCCcccc--cCchhcccCCCCCEEecCCCC
Q 037792 375 GDLQNIHGLNLSHNFLSGSIPESFSNL------KMIESLDLSHNKLNG--QIPPQLTELHSLSTFDVSYNN 437 (558)
Q Consensus 375 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~i~~--~~~~~l~~l~~L~~L~l~~N~ 437 (558)
..+++|++|++++|++++..+..|... +.++.|++++|.+.. ..|..|..+++++.+++++|+
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 888888888888888887766666433 678888888888763 567788888888888888875
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=1.6e-31 Score=264.58 Aligned_cols=304 Identities=23% Similarity=0.300 Sum_probs=241.1
Q ss_pred CCcCCCCCChhhhhcCC-----CccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccC
Q 037792 17 RNSFSGKLPQNMGIVLP-----KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSN 91 (558)
Q Consensus 17 ~n~l~~~~p~~~~~~l~-----~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 91 (558)
.+.+. .+|..+...+| +++.++++++.++ .+|..+. +++++|++++|.++ .++...+.++++|++|++++
T Consensus 13 ~~~l~-~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~ 87 (332)
T 2ft3_A 13 IPDLD-SLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVN 87 (332)
T ss_dssp -------------CCCCSSCEEETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred CCccc-cCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCC
Confidence 34444 67766655444 7999999999998 5666553 68999999999998 56555568899999999999
Q ss_pred CccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc--c
Q 037792 92 NNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG--N 169 (558)
Q Consensus 92 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~ 169 (558)
|.+++..+..+.++++|++|++++|.++. .|..+. ++|++|++++|.+....+..|.++++|+.|++++|.+.. .
T Consensus 88 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 164 (332)
T 2ft3_A 88 NKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164 (332)
T ss_dssp SCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS
T ss_pred CccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC
Confidence 99998888899999999999999999984 444443 899999999999997777789999999999999999863 6
Q ss_pred chhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCc
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNY 249 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~ 249 (558)
.+..+..+ +|+.|++++|.+++.+.... ++|++|++++|.+++..+..+.. +++|++|++++|.
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~-------------l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLR-------------YSKLYRLGLGHNQ 228 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTT-------------CTTCSCCBCCSSC
T ss_pred CcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcC-------------CCCCCEEECCCCc
Confidence 67778877 99999999999998665543 78999999999998776666664 4566677777788
Q ss_pred CCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCcc
Q 037792 250 LQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGR 329 (558)
Q Consensus 250 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (558)
+++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 229 l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~--------------------------------------------- 262 (332)
T 2ft3_A 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD--------------------------------------------- 262 (332)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG---------------------------------------------
T ss_pred CCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc---------------------------------------------
Confidence 88777788999999999999999997 66665544
Q ss_pred ccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccC------ccCCCeeeccCCcCC--ccchhhhhcc
Q 037792 330 MLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGD------LQNIHGLNLSHNFLS--GSIPESFSNL 401 (558)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~N~l~--~~~~~~~~~l 401 (558)
+++|+.|++++|.+++..+..|.. .+.|+.|++++|++. +..|..|..+
T Consensus 263 -----------------------l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 263 -----------------------LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp -----------------------CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred -----------------------CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence 788999999999999777777755 367899999999987 6778889999
Q ss_pred ccCCeEeCCCCc
Q 037792 402 KMIESLDLSHNK 413 (558)
Q Consensus 402 ~~L~~L~Ls~N~ 413 (558)
++|+.+++++|+
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 999999999885
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=6.4e-31 Score=260.11 Aligned_cols=289 Identities=19% Similarity=0.238 Sum_probs=191.1
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeec
Q 037792 34 KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYL 113 (558)
Q Consensus 34 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 113 (558)
+++.++++++.++ .+|..+. +++++|++++|.++ .++...+.++++|++|++++|.+.+..+..+.++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5566666666555 3343332 45666666666665 344433455666666666666666555566666666666666
Q ss_pred cccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc--cchhhhcCCcccceeeccccccc
Q 037792 114 YNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG--NIPVQFNNLASLQILNISENNLS 191 (558)
Q Consensus 114 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~ 191 (558)
++|.++. .|..+. ++|++|++++|.+++..+..+.++++|+.|++++|.+.. ..+..+..+++|+.|++++|.++
T Consensus 108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 6666653 333322 567777777777776666667777777777777777642 45566777777777777777777
Q ss_pred cccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEccc
Q 037792 192 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISH 271 (558)
Q Consensus 192 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 271 (558)
..+.... ++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+..+++|++|++++
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l-------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGL-------------NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTC-------------TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCC-------------CCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 6554433 678888888888876666666543 4555566666677666666777888888888888
Q ss_pred CcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccch
Q 037792 272 NRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGD 351 (558)
Q Consensus 272 n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (558)
|+++ .+|..+..
T Consensus 250 N~l~-~lp~~l~~------------------------------------------------------------------- 261 (330)
T 1xku_A 250 NKLV-KVPGGLAD------------------------------------------------------------------- 261 (330)
T ss_dssp SCCS-SCCTTTTT-------------------------------------------------------------------
T ss_pred CcCc-cCChhhcc-------------------------------------------------------------------
Confidence 8876 55554433
Q ss_pred hhcccCEEEccCCCCCCCCCccccC------ccCCCeeeccCCcCCc--cchhhhhccccCCeEeCCCCc
Q 037792 352 ILELMAGLDLSNNELTGDIPSEIGD------LQNIHGLNLSHNFLSG--SIPESFSNLKMIESLDLSHNK 413 (558)
Q Consensus 352 ~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~ 413 (558)
+++|++|++++|.+++..+..|.. .+.++.|++++|++.. ..|..|..+.+++.+++++|+
T Consensus 262 -l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 262 -HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp -CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred -CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 677888888888888666666643 3778899999998864 567788999999999999885
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=9.7e-32 Score=263.41 Aligned_cols=253 Identities=29% Similarity=0.459 Sum_probs=154.8
Q ss_pred CCCEEEccCCccCc--cCchhhcCCCccCeeeccc-cccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEE
Q 037792 83 SLEWLDLSNNNFVG--QIFPNYMNLTRLWALYLYN-NNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQIL 159 (558)
Q Consensus 83 ~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 159 (558)
++++|++++|.+.+ .+|..+.++++|++|++++ |.+.+..|..+.++++|++|++++|.+++..|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555554 4455555555555555553 55554455555555555555555555554455555555555555
Q ss_pred EcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCC
Q 037792 160 SMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSN 239 (558)
Q Consensus 160 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 239 (558)
++++|.+.+..|..+..+ ++|++|++++|.+++.+|..+..++ ++
T Consensus 131 ~Ls~N~l~~~~p~~~~~l-----------------------~~L~~L~L~~N~l~~~~p~~l~~l~------------~~ 175 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSL-----------------------PNLVGITFDGNRISGAIPDSYGSFS------------KL 175 (313)
T ss_dssp ECCSSEEESCCCGGGGGC-----------------------TTCCEEECCSSCCEEECCGGGGCCC------------TT
T ss_pred eCCCCccCCcCChHHhcC-----------------------CCCCeEECcCCcccCcCCHHHhhhh------------hc
Confidence 555555544444444444 4555555555555444444444321 13
Q ss_pred cCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhh
Q 037792 240 LRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTV 319 (558)
Q Consensus 240 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (558)
|++|++++|.+++..|..+..++ |+.|++++|++++..|..+..
T Consensus 176 L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~----------------------------------- 219 (313)
T 1ogq_A 176 FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS----------------------------------- 219 (313)
T ss_dssp CCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT-----------------------------------
T ss_pred CcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc-----------------------------------
Confidence 44444555555555555555555 666666666665544444333
Q ss_pred hhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhh
Q 037792 320 ELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFS 399 (558)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 399 (558)
+++|+.|++++|.+++..+. +..+++|++|++++|.+++.+|..+.
T Consensus 220 ---------------------------------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 220 ---------------------------------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp ---------------------------------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred ---------------------------------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHh
Confidence 55666777777776655444 66778888888888888888888888
Q ss_pred ccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCC
Q 037792 400 NLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGP 441 (558)
Q Consensus 400 ~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~ 441 (558)
.+++|++|++++|++++.+|.. ..+++|+.+++++|+..+.
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 8888888888888888888776 7788888888888885443
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.5e-32 Score=281.42 Aligned_cols=358 Identities=19% Similarity=0.146 Sum_probs=250.3
Q ss_pred CCcCCCccEEEccCCcCCCC----CChhhhhcCCCccEEEccCCcCCCCCchhhh-CCC----CCCEEEcccccCCc---
Q 037792 4 TSAQHGLHSLDISRNSFSGK----LPQNMGIVLPKLVYMNISKNSFEGNIPSSIG-KMQ----GLRLLDVSSNNFAG--- 71 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~----~L~~L~L~~n~l~~--- 71 (558)
+..+++|++|++++|.+++. ++..+. .+++|++|++++|.+++..+..+. .++ +|++|++++|.+++
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHH-hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 45788999999999998732 343333 489999999999999865454443 455 69999999999984
Q ss_pred -cchHHHHhcCCCCCEEEccCCccCccCchhhc-----CCCccCeeecccccccccc----chhhcCCCCCCEEEccCCc
Q 037792 72 -ELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM-----NLTRLWALYLYNNNFSGKI----KDGLLRSTELMVLDISNNR 141 (558)
Q Consensus 72 -~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~L~~n~ 141 (558)
.++ ..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.++... +..+..+++|++|++++|.
T Consensus 103 ~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 103 GVLS-STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHH-HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHH-HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 234 3457899999999999998764444333 3668999999999998643 5566778999999999999
Q ss_pred CCCCCccccc-----CCCCCcEEEcccCcCccc----chhhhcCCcccceeecccccccccc-----CCCc-CCCCccEE
Q 037792 142 LSGHIPSWMG-----NFSTLQILSMSKNLLEGN----IPVQFNNLASLQILNISENNLSGSM-----ISTL-NLSSVEHL 206 (558)
Q Consensus 142 l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~-----~~~~-~~~~L~~L 206 (558)
+....+..+. ..++|+.|++++|.+.+. ++..+..+++|++|++++|.+.+.. .... .+++|++|
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L 261 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence 8754444443 366999999999999864 4677888999999999999987643 1222 47899999
Q ss_pred EccCCcCccc----chhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhcc-----CCCCCCEEEcccCcCccc
Q 037792 207 YLQNNALGGS----IPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLC-----HLRKLGIMDISHNRLNGS 277 (558)
Q Consensus 207 ~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~ 277 (558)
++++|.+++. ++..+..+++ |++|++++|.+++..+..+. ..++|++|++++|.+++.
T Consensus 262 ~L~~n~l~~~~~~~l~~~l~~~~~-------------L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 262 WIWECGITAKGCGDLCRVLRAKES-------------LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCTT-------------CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred ECcCCCCCHHHHHHHHHHHhhCCC-------------cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 9999999864 4556665554 45555555666543333332 235778888888777643
Q ss_pred cChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccC
Q 037792 278 IPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMA 357 (558)
Q Consensus 278 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 357 (558)
....+...- ..+++|+
T Consensus 329 ~~~~l~~~l----------------------------------------------------------------~~~~~L~ 344 (461)
T 1z7x_W 329 CCSHFSSVL----------------------------------------------------------------AQNRFLL 344 (461)
T ss_dssp GHHHHHHHH----------------------------------------------------------------HHCSSCC
T ss_pred HHHHHHHHH----------------------------------------------------------------hhCCCcc
Confidence 221111100 0046777
Q ss_pred EEEccCCCCCCCCCccccC-----ccCCCeeeccCCcCCc----cchhhhhccccCCeEeCCCCcccccCchhcc-----
Q 037792 358 GLDLSNNELTGDIPSEIGD-----LQNIHGLNLSHNFLSG----SIPESFSNLKMIESLDLSHNKLNGQIPPQLT----- 423 (558)
Q Consensus 358 ~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~----- 423 (558)
.|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|+++......+.
T Consensus 345 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~ 424 (461)
T 1z7x_W 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 424 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTS
T ss_pred EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhcc
Confidence 7888888776544433332 5678888888888875 5677777788888888888887743222221
Q ss_pred cCCCCCEEecCCCCCcC
Q 037792 424 ELHSLSTFDVSYNNLSG 440 (558)
Q Consensus 424 ~l~~L~~L~l~~N~l~~ 440 (558)
....|+.|++.++.+..
T Consensus 425 ~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 425 PGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp TTCCCCEEECTTCCCCH
T ss_pred CCcchhheeecccccCH
Confidence 23457777777766653
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=5.4e-29 Score=243.57 Aligned_cols=272 Identities=20% Similarity=0.238 Sum_probs=187.5
Q ss_pred eeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc--chhhhcCCcccceeeccc
Q 037792 110 ALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN--IPVQFNNLASLQILNISE 187 (558)
Q Consensus 110 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~ 187 (558)
.++.+++.++. .|..+ .++|++|++++|.++...+..|.++++|++|++++|.+... .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 44555555542 23322 24666666666666644444556666677777766666522 244555667777777777
Q ss_pred cccccccCCCcCCCCccEEEccCCcCcccch-hhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCE
Q 037792 188 NNLSGSMISTLNLSSVEHLYLQNNALGGSIP-NTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGI 266 (558)
Q Consensus 188 n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 266 (558)
|.+...+..+..+++|++|++++|.+++..+ ..+.. +++|++|++++|.+.+..+..+..+++|++
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTT-------------CTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhh-------------ccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 7766555444466777777777777664333 23332 455666666667777677777888888888
Q ss_pred EEcccCcCcc-ccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeeccccc
Q 037792 267 MDISHNRLNG-SIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRY 345 (558)
Q Consensus 267 L~l~~n~l~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (558)
|++++|.+++ ..|..+..
T Consensus 155 L~l~~n~l~~~~~~~~~~~------------------------------------------------------------- 173 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTE------------------------------------------------------------- 173 (306)
T ss_dssp EECTTCEEGGGEECSCCTT-------------------------------------------------------------
T ss_pred EECCCCccccccchhHHhh-------------------------------------------------------------
Confidence 8888888764 34443332
Q ss_pred ccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccC
Q 037792 346 ESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL 425 (558)
Q Consensus 346 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l 425 (558)
+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+
T Consensus 174 -------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 174 -------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp -------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred -------CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 6788899999999987778889999999999999999998777788999999999999999998888888888
Q ss_pred C-CCCEEecCCCCCcCCCCCCc---ccCCCCcccccCCCCCCCC
Q 037792 426 H-SLSTFDVSYNNLSGPIPDKE---QFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 426 ~-~L~~L~l~~N~l~~~~p~~~---~~~~l~~~~~~~N~~~C~~ 465 (558)
+ +|++|++++|++++.++..+ ++.....+....+...|..
T Consensus 247 ~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~ 290 (306)
T 2z66_A 247 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECAT 290 (306)
T ss_dssp CTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEE
T ss_pred hccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCC
Confidence 5 89999999999998766422 2222333344445555543
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.1e-29 Score=247.33 Aligned_cols=281 Identities=20% Similarity=0.194 Sum_probs=175.9
Q ss_pred CCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCE
Q 037792 55 KMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMV 134 (558)
Q Consensus 55 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 134 (558)
.++.....+++++.++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3455556777777777 677644 357778888877777655556777777777777777777666666777777777
Q ss_pred EEccCCcCCCCCcccccCCCCCcEEEcccCcCcccch-hhhcCCcccceeecccc-ccccccCCCc-CCCCccEEEccCC
Q 037792 135 LDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIP-VQFNNLASLQILNISEN-NLSGSMISTL-NLSSVEHLYLQNN 211 (558)
Q Consensus 135 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~i~~~~~~~~-~~~~L~~L~l~~n 211 (558)
|++++|.+++..+..+.++++|++|++++|++.+..+ ..+..+++|++|++++| .+....+..+ .+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 7777777775544556667777777777776663332 35566666666666666 3444433333 4555555555555
Q ss_pred cCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccc
Q 037792 212 ALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVE 291 (558)
Q Consensus 212 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~ 291 (558)
.+.+..+..+.. +++|++|++++|.++......+..+++|+.|++++
T Consensus 185 ~l~~~~~~~l~~-------------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~-------------------- 231 (353)
T 2z80_A 185 DLQSYEPKSLKS-------------IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD-------------------- 231 (353)
T ss_dssp TCCEECTTTTTT-------------CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES--------------------
T ss_pred CcCccCHHHHhc-------------cccCCeecCCCCccccchhhhhhhcccccEEECCC--------------------
Confidence 555444444432 22333333444444322222233344444555544
Q ss_pred cCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCC
Q 037792 292 NGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIP 371 (558)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 371 (558)
|.+++..+
T Consensus 232 ------------------------------------------------------------------------n~l~~~~~ 239 (353)
T 2z80_A 232 ------------------------------------------------------------------------TDLDTFHF 239 (353)
T ss_dssp ------------------------------------------------------------------------CBCTTCCC
T ss_pred ------------------------------------------------------------------------Cccccccc
Confidence 44443322
Q ss_pred ccc---cCccCCCeeeccCCcCCc----cchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC
Q 037792 372 SEI---GDLQNIHGLNLSHNFLSG----SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 372 ~~~---~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
..+ ...+.++.++++++.+++ .+|+.+..+++|++|++++|+++...+..|..+++|++|++++|+++|.+|.
T Consensus 240 ~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 222 224456666666666654 3677889999999999999999955555568999999999999999988875
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.1e-29 Score=271.91 Aligned_cols=394 Identities=14% Similarity=0.078 Sum_probs=253.7
Q ss_pred CcCCCccEEEccCCcCC---CCCC-----------hhhhhcCCCccEEEccCCcCCCCCchhhhC-CC-CCCEEEccccc
Q 037792 5 SAQHGLHSLDISRNSFS---GKLP-----------QNMGIVLPKLVYMNISKNSFEGNIPSSIGK-MQ-GLRLLDVSSNN 68 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~---~~~p-----------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~-~L~~L~L~~n~ 68 (558)
..+++|++|+++++... +.+| ..+...+++|++|++++|.+++..+..+.. ++ +|++|++++|.
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence 46778888888774321 1222 223335788899999888887666666655 33 48888888876
Q ss_pred -CCccchHHHHhcCCCCCEEEccCCccCcc----CchhhcCCCccCeeecccccccc----ccchhhcCCCCCCEEEccC
Q 037792 69 -FAGELSQSLVINCFSLEWLDLSNNNFVGQ----IFPNYMNLTRLWALYLYNNNFSG----KIKDGLLRSTELMVLDISN 139 (558)
Q Consensus 69 -l~~~~~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~ 139 (558)
++......+...+++|++|++++|.+.+. ++....++++|++|++++|.+++ ..+..+..+++|++|++++
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 22112223345788888888888887654 33345678888888888888762 3344456778888888888
Q ss_pred CcCCCCCcccccCCCCCcEEEcccCcCc---ccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCccc
Q 037792 140 NRLSGHIPSWMGNFSTLQILSMSKNLLE---GNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGS 216 (558)
Q Consensus 140 n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~ 216 (558)
|.+.+ .+..+..+++|+.|+++..... ...+..+..+++|+.|.++++.....+.....+++|++|++++|.+++.
T Consensus 230 ~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~ 308 (592)
T 3ogk_B 230 FEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308 (592)
T ss_dssp CBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHH
T ss_pred ccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHH
Confidence 88774 5677778888888888753322 1233445667788888877754443333333677888888888876544
Q ss_pred ch-hhhhCCCCCcEEEcCCC-----------CCCCcCEEEccC-----------CcCCCC-chhhccCCCCCCEEEcccC
Q 037792 217 IP-NTFFRGSALETLDLRIN-----------EHSNLRTLLLRG-----------NYLQGP-IPHQLCHLRKLGIMDISHN 272 (558)
Q Consensus 217 ~~-~~~~~~~~L~~L~l~~n-----------~~~~L~~L~l~~-----------n~l~~~-~~~~~~~l~~L~~L~l~~n 272 (558)
.. ..+..+++|+.|+++.+ .+++|++|++++ +.+++. ++.....+++|++|+++.|
T Consensus 309 ~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 388 (592)
T 3ogk_B 309 DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388 (592)
T ss_dssp HHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred HHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence 33 34567788888888643 367788888883 455533 2233455788888888878
Q ss_pred cCccccChhhhc-cc---ccccc----cCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccc
Q 037792 273 RLNGSIPACITN-ML---FSRVE----NGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR 344 (558)
Q Consensus 273 ~l~~~~p~~~~~-l~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (558)
.+++..+..+.. ++ ...+. .+.+.+.+... ..
T Consensus 389 ~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~--------------~~-------------------------- 428 (592)
T 3ogk_B 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN--------------GV-------------------------- 428 (592)
T ss_dssp CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH--------------HH--------------------------
T ss_pred CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH--------------HH--------------------------
Confidence 777655544433 11 11110 00000000000 00
Q ss_pred cccccchhhcccCEEEccCCC--CCCCCCcccc-CccCCCeeeccCCcCCcc-chhhhhccccCCeEeCCCCccccc-Cc
Q 037792 345 YESYKGDILELMAGLDLSNNE--LTGDIPSEIG-DLQNIHGLNLSHNFLSGS-IPESFSNLKMIESLDLSHNKLNGQ-IP 419 (558)
Q Consensus 345 ~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~i~~~-~~ 419 (558)
..+ ...+++|+.|++++|. +++..+..+. .+++|++|++++|++++. ++..+.++++|++|++++|.++.. ++
T Consensus 429 -~~~-~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 429 -RSL-LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp -HHH-HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred -HHH-HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 000 0116889999997654 5544444443 488999999999999863 455568889999999999998754 44
Q ss_pred hhcccCCCCCEEecCCCCCcCC
Q 037792 420 PQLTELHSLSTFDVSYNNLSGP 441 (558)
Q Consensus 420 ~~l~~l~~L~~L~l~~N~l~~~ 441 (558)
.....+++|++|++++|+++..
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhcCccCeeECcCCcCCHH
Confidence 4556789999999999998753
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=246.10 Aligned_cols=259 Identities=19% Similarity=0.185 Sum_probs=205.2
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCC
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLE 85 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 85 (558)
.|+.....+++++.++ .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|.++ .++...+.++++|+
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCC
T ss_pred CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCC
Confidence 4666777899999998 8998764 58999999999999777778999999999999999998 55555567889999
Q ss_pred EEEccCCccCccCchhhcCCCccCeeeccccccccccc-hhhcCCCCCCEEEccCC-cCCCCCcccccCCCCCcEEEccc
Q 037792 86 WLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIK-DGLLRSTELMVLDISNN-RLSGHIPSWMGNFSTLQILSMSK 163 (558)
Q Consensus 86 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 163 (558)
+|++++|.+++..+..+.++++|++|++++|.++.... ..+..+++|++|++++| .+....+..+.++++|+.|++++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 99999999987666668899999999999999885544 47888999999999998 46666677888899999999999
Q ss_pred CcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCE
Q 037792 164 NLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRT 242 (558)
Q Consensus 164 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~ 242 (558)
|.+.+..|..+..+++|++|++++|.+...+...+ .+++|++|++++|.+++..+..+.... ..+.++.
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~----------~~~~l~~ 253 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE----------TNSLIKK 253 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------------CCCCCCE
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccc----------ccchhhc
Confidence 99988888889999999999999998876655444 578999999999988865443332211 2355666
Q ss_pred EEccCCcCCC----CchhhccCCCCCCEEEcccCcCccccCh
Q 037792 243 LLLRGNYLQG----PIPHQLCHLRKLGIMDISHNRLNGSIPA 280 (558)
Q Consensus 243 L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 280 (558)
++++++.+.+ .+|..+..+++|++|++++|+++ .+|.
T Consensus 254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~ 294 (353)
T 2z80_A 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPD 294 (353)
T ss_dssp EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCT
T ss_pred cccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCH
Confidence 7777776664 35777888889999999999887 4443
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=244.80 Aligned_cols=252 Identities=24% Similarity=0.296 Sum_probs=208.6
Q ss_pred ccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecc
Q 037792 107 RLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186 (558)
Q Consensus 107 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 186 (558)
..+.++.++..++ .+|..+ .++++.|++++|.++...+..|.++++|+.|++++|.+.+..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3567788888777 455544 3789999999999998888899999999999999999998888899999999999999
Q ss_pred ccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccC-CcCCCCchhhccCCCCC
Q 037792 187 ENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRG-NYLQGPIPHQLCHLRKL 264 (558)
Q Consensus 187 ~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L 264 (558)
+|.++..+...+ .+++|++|++++|.+....+..+..+++|+ +|++++ +.+....+..+..+++|
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~-------------~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR-------------RLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC-------------EEECCCCTTCCEECTTTTTTCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC-------------EeCCCCCCCcceeCcchhhccccc
Confidence 999998887666 889999999999999876666776655554 445554 34444445578889999
Q ss_pred CEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccc
Q 037792 265 GIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR 344 (558)
Q Consensus 265 ~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (558)
++|++++|+++ .+|. +..
T Consensus 188 ~~L~L~~n~l~-~~~~-~~~------------------------------------------------------------ 205 (440)
T 3zyj_A 188 RYLNLAMCNLR-EIPN-LTP------------------------------------------------------------ 205 (440)
T ss_dssp CEEECTTSCCS-SCCC-CTT------------------------------------------------------------
T ss_pred CeecCCCCcCc-cccc-cCC------------------------------------------------------------
Confidence 99999999886 2231 111
Q ss_pred cccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhccc
Q 037792 345 YESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 424 (558)
Q Consensus 345 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 424 (558)
+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+..|.++++|+.|+|++|+++...+..|..
T Consensus 206 --------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 206 --------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp --------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred --------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 678999999999999888889999999999999999999888888999999999999999999888888889
Q ss_pred CCCCCEEecCCCCCcCCCCC
Q 037792 425 LHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 425 l~~L~~L~l~~N~l~~~~p~ 444 (558)
+++|+.|++++|++.|.+..
T Consensus 278 l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CTTCCEEECCSSCEECSSTT
T ss_pred ccCCCEEEcCCCCccCCCCc
Confidence 99999999999999987765
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.6e-27 Score=244.54 Aligned_cols=252 Identities=20% Similarity=0.240 Sum_probs=206.3
Q ss_pred ccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecc
Q 037792 107 RLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186 (558)
Q Consensus 107 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 186 (558)
..+.++.++..++. +|..+ .++++.|++++|.+++..+..|.++++|+.|++++|.+.+..+..|.++++|+.|+++
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 34677777777763 45544 3689999999999998888899999999999999999998888889999999999999
Q ss_pred ccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccC-CcCCCCchhhccCCCCC
Q 037792 187 ENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRG-NYLQGPIPHQLCHLRKL 264 (558)
Q Consensus 187 ~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L 264 (558)
+|.++..+...+ .+++|++|++++|.++...+..+..+++|+.| ++++ +.+....+..+..+++|
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-------------~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL-------------DLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE-------------ECCCCTTCCEECTTTTTTCTTC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE-------------eCCCCCCccccChhhccCCCCC
Confidence 999998887766 78999999999999986666667665555444 4444 34444445578889999
Q ss_pred CEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccc
Q 037792 265 GIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR 344 (558)
Q Consensus 265 ~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (558)
++|++++|++++ +|. +..
T Consensus 199 ~~L~L~~n~l~~-~~~-~~~------------------------------------------------------------ 216 (452)
T 3zyi_A 199 KYLNLGMCNIKD-MPN-LTP------------------------------------------------------------ 216 (452)
T ss_dssp CEEECTTSCCSS-CCC-CTT------------------------------------------------------------
T ss_pred CEEECCCCcccc-ccc-ccc------------------------------------------------------------
Confidence 999999998863 221 111
Q ss_pred cccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhccc
Q 037792 345 YESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 424 (558)
Q Consensus 345 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 424 (558)
+++|+.|++++|.+++..|..|.++++|++|++++|.+++..+..|.++++|+.|+|++|+++...+..+..
T Consensus 217 --------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 217 --------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp --------CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred --------cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 678999999999999888888999999999999999999888888999999999999999999888888888
Q ss_pred CCCCCEEecCCCCCcCCCCC
Q 037792 425 LHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 425 l~~L~~L~l~~N~l~~~~p~ 444 (558)
+++|+.|++++|++.|.+..
T Consensus 289 l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CTTCCEEECCSSCEECSTTT
T ss_pred ccCCCEEEccCCCcCCCCCc
Confidence 99999999999999988775
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=7.5e-30 Score=273.30 Aligned_cols=400 Identities=12% Similarity=0.069 Sum_probs=276.5
Q ss_pred EEEccCCcCCCCCChhhhhcCCCccEEEccCCcCC---CCCch------------hhhCCCCCCEEEcccccCCccchHH
Q 037792 12 SLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFE---GNIPS------------SIGKMQGLRLLDVSSNNFAGELSQS 76 (558)
Q Consensus 12 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~---~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~ 76 (558)
.+.+.++ .. ..|..++..+++|++|+++++... +..|. ....+++|++|++++|.+++..+..
T Consensus 54 ~l~~~~~-~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~ 131 (592)
T 3ogk_B 54 HVTMALC-YT-ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDR 131 (592)
T ss_dssp EEEESCG-GG-SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred EEEEeec-cc-cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHH
Confidence 3444433 33 566777777999999999885421 12222 2237899999999999988655555
Q ss_pred HHhcCCC-CCEEEccCCcc-Cc-cCchhhcCCCccCeeeccccccccc----cchhhcCCCCCCEEEccCCcCCC----C
Q 037792 77 LVINCFS-LEWLDLSNNNF-VG-QIFPNYMNLTRLWALYLYNNNFSGK----IKDGLLRSTELMVLDISNNRLSG----H 145 (558)
Q Consensus 77 ~~~~l~~-L~~L~l~~n~i-~~-~~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~----~ 145 (558)
+...+++ |++|++++|.. .. ..+....++++|++|++++|.+++. .+.....+++|++|++++|.+++ .
T Consensus 132 l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~ 211 (592)
T 3ogk_B 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD 211 (592)
T ss_dssp HHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHH
T ss_pred HHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHH
Confidence 5333455 99999999862 21 1222345899999999999998755 33455678999999999999873 3
Q ss_pred CcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecccccccc----ccCCCcCCCCccEEEccCCcCcccchhhh
Q 037792 146 IPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSG----SMISTLNLSSVEHLYLQNNALGGSIPNTF 221 (558)
Q Consensus 146 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 221 (558)
.+..+.++++|+.|++++|.+.+ .+..+..+++|++|+++...... .......+++|+.|+++++.. ..++..+
T Consensus 212 l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~ 289 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILF 289 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGG
T ss_pred HHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHH
Confidence 34456678999999999999884 67889999999999998643321 112222778999999998643 4677788
Q ss_pred hCCCCCcEEEcCCC------------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEccc-----------CcCcccc
Q 037792 222 FRGSALETLDLRIN------------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISH-----------NRLNGSI 278 (558)
Q Consensus 222 ~~~~~L~~L~l~~n------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~~ 278 (558)
..+++|+.|++++| .+++|++|+++++...+.++.....+++|++|++++ +.+++..
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~ 369 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH
Confidence 88999999999998 478999999994332233445557789999999994 4554321
Q ss_pred Chhh-hcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeeccccccc----ccchhh
Q 037792 279 PACI-TNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYES----YKGDIL 353 (558)
Q Consensus 279 p~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l 353 (558)
...+ ..++.. ..+.. ..+.... .-+..+
T Consensus 370 ~~~l~~~~~~L----------------------------------------------~~L~l-~~~~l~~~~~~~l~~~~ 402 (592)
T 3ogk_B 370 LIALAQGCQEL----------------------------------------------EYMAV-YVSDITNESLESIGTYL 402 (592)
T ss_dssp HHHHHHHCTTC----------------------------------------------SEEEE-EESCCCHHHHHHHHHHC
T ss_pred HHHHHhhCccC----------------------------------------------eEEEe-ecCCccHHHHHHHHhhC
Confidence 1111 111100 00000 0000000 001126
Q ss_pred cccCEEEcc----CCCCCCC-----CCccccCccCCCeeeccCCc--CCccchhhhh-ccccCCeEeCCCCcccc-cCch
Q 037792 354 ELMAGLDLS----NNELTGD-----IPSEIGDLQNIHGLNLSHNF--LSGSIPESFS-NLKMIESLDLSHNKLNG-QIPP 420 (558)
Q Consensus 354 ~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~-~l~~L~~L~Ls~N~i~~-~~~~ 420 (558)
++|+.|+++ .|.+++. ++..+.++++|++|++++|. +++..+..+. .+++|++|++++|.+++ .++.
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 482 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME 482 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH
Confidence 789999996 6677753 23346779999999998654 7766665554 48999999999999986 3455
Q ss_pred hcccCCCCCEEecCCCCCcCC-CCC-CcccCCCCcccccCCCCC
Q 037792 421 QLTELHSLSTFDVSYNNLSGP-IPD-KEQFSTFDESSYRGNLFL 462 (558)
Q Consensus 421 ~l~~l~~L~~L~l~~N~l~~~-~p~-~~~~~~l~~~~~~~N~~~ 462 (558)
.+..+++|++|++++|+++.. ++. ...+++++.+++++|...
T Consensus 483 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 483 FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 668899999999999998643 222 345678899999998853
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=243.94 Aligned_cols=245 Identities=23% Similarity=0.219 Sum_probs=126.0
Q ss_pred CEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccC
Q 037792 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 164 (558)
+.++.++..++ .+|..+. ++++.|++++|.++...+..|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 44555554444 2333222 44555555555555555555555555555555555555555555555555555555555
Q ss_pred cCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCc-CcccchhhhhCCCCCcEEEcCCCCCCCcCE
Q 037792 165 LLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNA-LGGSIPNTFFRGSALETLDLRINEHSNLRT 242 (558)
Q Consensus 165 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~ 242 (558)
++++..+..|..+++|+.|++++|.+...+...+ .+++|++|++++|. +....+..+..+ ++|++
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l-------------~~L~~ 189 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL-------------SNLRY 189 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC-------------SSCCE
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc-------------cccCe
Confidence 5554444455555555555555555555544444 55555555555532 222222233322 33333
Q ss_pred EEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhh
Q 037792 243 LLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELL 322 (558)
Q Consensus 243 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (558)
|++++|.++. +| .+..+++|+.|++++|++++..|..|.+
T Consensus 190 L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------------- 229 (440)
T 3zyj_A 190 LNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQG-------------------------------------- 229 (440)
T ss_dssp EECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTT--------------------------------------
T ss_pred ecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhcc--------------------------------------
Confidence 3333344432 22 2445555555555555555443433332
Q ss_pred ccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccc
Q 037792 323 LDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLK 402 (558)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 402 (558)
+++|+.|++++|.+++..+..|..+++|++|+|++|++++..++.|..++
T Consensus 230 ------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 230 ------------------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp ------------------------------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred ------------------------------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 44555555555555555555555555555555555555555555555555
Q ss_pred cCCeEeCCCCccc
Q 037792 403 MIESLDLSHNKLN 415 (558)
Q Consensus 403 ~L~~L~Ls~N~i~ 415 (558)
+|+.|+|++|.+.
T Consensus 280 ~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 280 HLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEcCCCCcc
Confidence 5555555555554
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.4e-27 Score=244.80 Aligned_cols=246 Identities=21% Similarity=0.198 Sum_probs=136.4
Q ss_pred CCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEccc
Q 037792 84 LEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSK 163 (558)
Q Consensus 84 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 163 (558)
.+.++.++..++. +|..+. ++++.|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3455555555542 333222 4566666666666655555666666666666666666655555666666666666666
Q ss_pred CcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCc-CcccchhhhhCCCCCcEEEcCCCCCCCcC
Q 037792 164 NLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNA-LGGSIPNTFFRGSALETLDLRINEHSNLR 241 (558)
Q Consensus 164 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~L~ 241 (558)
|.+....+..|..+++|++|++++|.+...+...+ .+++|++|++++|. +....+..+.. +++|+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-------------l~~L~ 199 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-------------LFNLK 199 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-------------CTTCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC-------------CCCCC
Confidence 66665555556666666666666666665555444 55666666666532 32222223333 23334
Q ss_pred EEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhh
Q 037792 242 TLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVEL 321 (558)
Q Consensus 242 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (558)
+|++++|.+++. | .+..+++|+.|++++|++++..|..+.+
T Consensus 200 ~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------- 240 (452)
T 3zyi_A 200 YLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHG------------------------------------- 240 (452)
T ss_dssp EEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTT-------------------------------------
T ss_pred EEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccC-------------------------------------
Confidence 444444444422 2 3555566666666666665444444433
Q ss_pred hccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhcc
Q 037792 322 LLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNL 401 (558)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 401 (558)
+++|+.|++++|.+++..+..|..+++|++|+|++|++++..++.|..+
T Consensus 241 -------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 241 -------------------------------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -------------------------------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 4556666666666665555566666666666666666665555555666
Q ss_pred ccCCeEeCCCCccc
Q 037792 402 KMIESLDLSHNKLN 415 (558)
Q Consensus 402 ~~L~~L~Ls~N~i~ 415 (558)
++|+.|+|++|.+.
T Consensus 290 ~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 RYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEccCCCcC
Confidence 66666666666554
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=8.6e-28 Score=234.99 Aligned_cols=150 Identities=21% Similarity=0.239 Sum_probs=72.8
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCcc--CchhhcCCCccCeeec
Q 037792 36 VYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQ--IFPNYMNLTRLWALYL 113 (558)
Q Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l 113 (558)
+.++.+++.++ .+|..+. ++|++|++++|.++ .+|..++.++++|++|++++|.+... .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 35566665555 3343322 45666666666665 55555455566666666666655422 1344445555555555
Q ss_pred cccccccccchhhcCCCCCCEEEccCCcCCCCCc-ccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecccccc
Q 037792 114 YNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIP-SWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL 190 (558)
Q Consensus 114 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i 190 (558)
++|.+.. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 5555542 33334445555555555555443322 2344444444444444444433333344444444444444433
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.5e-27 Score=230.76 Aligned_cols=231 Identities=21% Similarity=0.211 Sum_probs=145.1
Q ss_pred CCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCc-CcccchhhhhCCCCCcEEE
Q 037792 154 STLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNA-LGGSIPNTFFRGSALETLD 231 (558)
Q Consensus 154 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~ 231 (558)
++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+ .+++|++|++++|. +....+..+..
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~-------- 103 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-------- 103 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT--------
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC--------
Confidence 345555555555554444445555555555555555554433333 45555555555554 44333444433
Q ss_pred cCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhccccccc
Q 037792 232 LRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYV 311 (558)
Q Consensus 232 l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (558)
+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..
T Consensus 104 -----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------- 151 (285)
T 1ozn_A 104 -----LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD--------------------------- 151 (285)
T ss_dssp -----CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------------------
T ss_pred -----CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc---------------------------
Confidence 334445555555555555666667777777777777766433333332
Q ss_pred CcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCC
Q 037792 312 SNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLS 391 (558)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 391 (558)
+++|+.|++++|.+++..+..+..+++|++|++++|.++
T Consensus 152 -----------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 152 -----------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred -----------------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 566777777777777666666777888888888888888
Q ss_pred ccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCCcccccCCCCCCCC
Q 037792 392 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 392 ~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~ 465 (558)
+..|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.++..+...+++......+...|..
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCC
Confidence 77788888888888888888888877777788888888888888888877665444444555555556655543
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.9e-27 Score=228.69 Aligned_cols=263 Identities=19% Similarity=0.151 Sum_probs=212.2
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEcc
Q 037792 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLS 90 (558)
Q Consensus 11 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 90 (558)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence 68999999998 898765 469999999999999887788999999999999999998 5544455889999999999
Q ss_pred CCc-cCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 91 NNN-FVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 91 ~n~-i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
+|. +....+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 997 7776688899999999999999999988888899999999999999999987777899999999999999999977
Q ss_pred chhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCC
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGN 248 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n 248 (558)
.+..+..+++|+.|++++|.+++..+..+ .+++|++|++++|.+++..+..+..+++|+.|++ ++|
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~N 235 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL-------------NDN 235 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC-------------CSS
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEec-------------cCC
Confidence 77779999999999999999998866666 8899999999999999877777876655555554 455
Q ss_pred cCCCCchhhccCCCCCCEEEcccCcCccccChhhhccccccccc
Q 037792 249 YLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVEN 292 (558)
Q Consensus 249 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~ 292 (558)
.+....+.. .-...++.+..+.+.+....|..+.......+..
T Consensus 236 ~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~ 278 (285)
T 1ozn_A 236 PWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAA 278 (285)
T ss_dssp CEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCG
T ss_pred CccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCH
Confidence 554322210 0011233344566677667777666554444433
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6.2e-27 Score=230.59 Aligned_cols=233 Identities=16% Similarity=0.229 Sum_probs=126.4
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEE
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 87 (558)
.+++.|++++|.++ .+|..++. +++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+ ..+++|++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEE
T ss_pred cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEE
Confidence 45566666666665 56655554 566666666666665 55555666666666666666665 555443 455666666
Q ss_pred EccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCc
Q 037792 88 DLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLE 167 (558)
Q Consensus 88 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (558)
++++|.+.+..|..+... .....+.++++|++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 666655554444443320 00011223555555555555555 44555555555555555555555
Q ss_pred ccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEcc
Q 037792 168 GNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLR 246 (558)
Q Consensus 168 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~ 246 (558)
+ +|..+..+++|+.|++++|.+.+..+..+ .+++|++|++++|.+.+.+|..+.. +++|++|+++
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-------------l~~L~~L~L~ 285 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-------------LTQLEKLDLR 285 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG-------------CTTCCEEECT
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc-------------CCCCCEEeCC
Confidence 2 33345555555555555555554444333 5556666666666555555555543 2344444555
Q ss_pred CCcCCCCchhhccCCCCCCEEEcccCcCc
Q 037792 247 GNYLQGPIPHQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 247 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 275 (558)
+|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 55555566666666666666666655443
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.4e-26 Score=228.00 Aligned_cols=235 Identities=21% Similarity=0.272 Sum_probs=164.1
Q ss_pred CCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceee
Q 037792 105 LTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILN 184 (558)
Q Consensus 105 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 184 (558)
.++++.|++++|.++ .+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 345566666666655 34444555566666666666655 55555555666666666666555 4455555555555555
Q ss_pred ccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCC
Q 037792 185 ISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKL 264 (558)
Q Consensus 185 L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 264 (558)
+++|.+.+ .+|..+........+ ..+++|++|++++|.++ .+|..+..+++|
T Consensus 157 L~~n~~~~-----------------------~~p~~~~~~~~~~~~----~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L 208 (328)
T 4fcg_A 157 IRACPELT-----------------------ELPEPLASTDASGEH----QGLVNLQSLRLEWTGIR-SLPASIANLQNL 208 (328)
T ss_dssp EEEETTCC-----------------------CCCSCSEEEC-CCCE----EESTTCCEEEEEEECCC-CCCGGGGGCTTC
T ss_pred CCCCCCcc-----------------------ccChhHhhccchhhh----ccCCCCCEEECcCCCcC-cchHhhcCCCCC
Confidence 55554433 333222110000000 02566777777778877 667778888999
Q ss_pred CEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccc
Q 037792 265 GIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR 344 (558)
Q Consensus 265 ~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (558)
++|++++|++++ +|..+..
T Consensus 209 ~~L~L~~N~l~~-l~~~l~~------------------------------------------------------------ 227 (328)
T 4fcg_A 209 KSLKIRNSPLSA-LGPAIHH------------------------------------------------------------ 227 (328)
T ss_dssp CEEEEESSCCCC-CCGGGGG------------------------------------------------------------
T ss_pred CEEEccCCCCCc-Cchhhcc------------------------------------------------------------
Confidence 999999998873 4444443
Q ss_pred cccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhccc
Q 037792 345 YESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 424 (558)
Q Consensus 345 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 424 (558)
+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..
T Consensus 228 --------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 228 --------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp --------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred --------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 678899999999988888989999999999999999988899989999999999999999999899999999
Q ss_pred CCCCCEEecCCCCCc
Q 037792 425 LHSLSTFDVSYNNLS 439 (558)
Q Consensus 425 l~~L~~L~l~~N~l~ 439 (558)
+++|+.+++..|.+.
T Consensus 300 L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 300 LPANCIILVPPHLQA 314 (328)
T ss_dssp SCTTCEEECCGGGSC
T ss_pred ccCceEEeCCHHHHH
Confidence 999999999877665
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.3e-25 Score=237.93 Aligned_cols=68 Identities=26% Similarity=0.351 Sum_probs=41.0
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccC
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL 425 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l 425 (558)
+++|+.|++++|.++ .+|. .+++|++|+|++|.++ .+|..+.++++|+.|+|++|.+++..|..+..+
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 345666666666666 3333 4556666666666666 445566666666666666666666655555443
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=7.2e-28 Score=258.02 Aligned_cols=389 Identities=14% Similarity=0.073 Sum_probs=233.6
Q ss_pred CcCCCccEEEccCCcCCCC---CC-----------hhhhhcCCCccEEEccCCcCCCCCchhhh-CCCCCCEEEcccc-c
Q 037792 5 SAQHGLHSLDISRNSFSGK---LP-----------QNMGIVLPKLVYMNISKNSFEGNIPSSIG-KMQGLRLLDVSSN-N 68 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~---~p-----------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n-~ 68 (558)
..+++|++|+++++..... .| ..+...+++|++|++++|.+++..+..+. .+++|++|++++| .
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 3567788888887652211 11 12334577888888888887766666665 6788888888887 4
Q ss_pred CCccchHHHHhcCCCCCEEEccCCccCccCchhhc----CCCccCeeeccccc--cccc-cchhhcCCCCCCEEEccCCc
Q 037792 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM----NLTRLWALYLYNNN--FSGK-IKDGLLRSTELMVLDISNNR 141 (558)
Q Consensus 69 l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~----~l~~L~~L~l~~n~--i~~~-~~~~~~~l~~L~~L~L~~n~ 141 (558)
+++.....+..++++|++|++++|.+++..+..+. .+++|++|++++|. +... .......+++|++|++++|.
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 44333344556788888888888887654444333 56688888888876 2211 12223446888888888873
Q ss_pred CCCCCcccccCCCCCcEEEcccCc-------CcccchhhhcCCccccee-eccccccccccCCCcCCCCccEEEccCCcC
Q 037792 142 LSGHIPSWMGNFSTLQILSMSKNL-------LEGNIPVQFNNLASLQIL-NISENNLSGSMISTLNLSSVEHLYLQNNAL 213 (558)
Q Consensus 142 l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L-~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l 213 (558)
.....+..+..+++|+.|+++.+. +. ..+..+.++++|+.| .+.+......+.....+++|++|++++|.+
T Consensus 223 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301 (594)
T ss_dssp CHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCC
T ss_pred cHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCC
Confidence 222356666777888888855442 22 233456667777776 333332221111111567888888888876
Q ss_pred cccch-hhhhCCCCCcEEEcCCC-----------CCCCcCEEEccC---------CcCCCCchhhcc-CCCCCCEEEccc
Q 037792 214 GGSIP-NTFFRGSALETLDLRIN-----------EHSNLRTLLLRG---------NYLQGPIPHQLC-HLRKLGIMDISH 271 (558)
Q Consensus 214 ~~~~~-~~~~~~~~L~~L~l~~n-----------~~~~L~~L~l~~---------n~l~~~~~~~~~-~l~~L~~L~l~~ 271 (558)
++... ..+..+++|+.|++++| .+++|++|++.+ +.+++.....+. .+++|+.|+++.
T Consensus 302 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 302 QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred CHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 64332 23456778888888776 367788887732 344433333332 477888887777
Q ss_pred CcCccccChhhhc-c---cccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeeccccccc
Q 037792 272 NRLNGSIPACITN-M---LFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYES 347 (558)
Q Consensus 272 n~l~~~~p~~~~~-l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (558)
|.+++..+..+.. + ....+...... ..+....
T Consensus 382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~--------------------------------------------~~~~l~~ 417 (594)
T 2p1m_B 382 RQMTNAALITIARNRPNMTRFRLCIIEPK--------------------------------------------APDYLTL 417 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESSTT--------------------------------------------CCCTTTC
T ss_pred CCcCHHHHHHHHhhCCCcceeEeecccCC--------------------------------------------CcccccC
Confidence 7776443333321 1 11111000000 0000000
Q ss_pred ------cc--chhhcccCEEEccCCCCCCCCCccccC-ccCCCeeeccCCcCCccchhhh-hccccCCeEeCCCCccccc
Q 037792 348 ------YK--GDILELMAGLDLSNNELTGDIPSEIGD-LQNIHGLNLSHNFLSGSIPESF-SNLKMIESLDLSHNKLNGQ 417 (558)
Q Consensus 348 ------~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~i~~~ 417 (558)
+. ...+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ .++++|++|++++|.++..
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 00 01157888888877 565444444544 7888899999888876655555 6788899999998888644
Q ss_pred Cch-hcccCCCCCEEecCCCCCc
Q 037792 418 IPP-QLTELHSLSTFDVSYNNLS 439 (558)
Q Consensus 418 ~~~-~l~~l~~L~~L~l~~N~l~ 439 (558)
... ....+++|+.|++++|+++
T Consensus 497 ~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 497 ALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHhCCCCCEEeeeCCCCC
Confidence 333 3445788889999888874
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.8e-27 Score=233.67 Aligned_cols=83 Identities=23% Similarity=0.201 Sum_probs=42.6
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
+++|+.|++++|.+++. + ....+++|++|++++|.+++. |..+..+++|+.|++++|.++. +|..+..+++|+.|+
T Consensus 168 l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFD 243 (317)
T ss_dssp TTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEE
T ss_pred cCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEE
Confidence 34455555555555533 1 122355555555555555533 2235555555555555555552 344455555555555
Q ss_pred cCCCCCc
Q 037792 433 VSYNNLS 439 (558)
Q Consensus 433 l~~N~l~ 439 (558)
+++|+++
T Consensus 244 l~~N~~~ 250 (317)
T 3o53_A 244 LRGNGFH 250 (317)
T ss_dssp CTTCCCB
T ss_pred ccCCCcc
Confidence 5555555
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.5e-27 Score=232.59 Aligned_cols=89 Identities=21% Similarity=0.271 Sum_probs=58.6
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCccc-ccCchhcccCCCCCEE
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN-GQIPPQLTELHSLSTF 431 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~l~~l~~L~~L 431 (558)
+++|+.|++++|.+++. |..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.+
T Consensus 190 l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred cccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 45666677777776633 334667777777777777777 45666777777777777777776 5566667777777777
Q ss_pred ecC-CCCCcCCCC
Q 037792 432 DVS-YNNLSGPIP 443 (558)
Q Consensus 432 ~l~-~N~l~~~~p 443 (558)
+++ .+.+.+..|
T Consensus 268 ~l~~~~~l~~~~~ 280 (317)
T 3o53_A 268 AKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHHSSSS
T ss_pred ECCCchhccCCch
Confidence 776 334444444
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.9e-27 Score=244.59 Aligned_cols=244 Identities=20% Similarity=0.208 Sum_probs=174.8
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEcc
Q 037792 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQ 209 (558)
Q Consensus 130 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~ 209 (558)
++|+.|++++|.+++..|..|..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++.+. .++|++|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence 367777777777776666677777777777777777765444 6777777777777777766543 2678888888
Q ss_pred CCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccc
Q 037792 210 NNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSR 289 (558)
Q Consensus 210 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~ 289 (558)
+|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..
T Consensus 108 ~N~l~~~~~~----------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~----- 166 (487)
T 3oja_A 108 NNNISRVSCS----------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA----- 166 (487)
T ss_dssp SSCCCCEEEC----------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG-----
T ss_pred CCcCCCCCcc----------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh-----
Confidence 8877754332 1356777777778888777777888888888888888887666655431
Q ss_pred cccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCC
Q 037792 290 VENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGD 369 (558)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 369 (558)
.+++|+.|++++|.+++.
T Consensus 167 --------------------------------------------------------------~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 167 --------------------------------------------------------------SSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp --------------------------------------------------------------GTTTCCEEECTTSCCCEE
T ss_pred --------------------------------------------------------------hCCcccEEecCCCccccc
Confidence 067788888888888855
Q ss_pred CCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCC-CCC-Ccc
Q 037792 370 IPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGP-IPD-KEQ 447 (558)
Q Consensus 370 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~-~p~-~~~ 447 (558)
.+ ...+++|++|+|++|.+++.+| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+. +|. ...
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred cc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 22 3358889999999999886544 48888899999999999885 566688888999999999988832 222 222
Q ss_pred cCCCCccccc-------CCCCCCCCC
Q 037792 448 FSTFDESSYR-------GNLFLCGPA 466 (558)
Q Consensus 448 ~~~l~~~~~~-------~N~~~C~~~ 466 (558)
+..+..+... +|++.|+|+
T Consensus 261 l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 261 NQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp CHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred CCCCcEEeccccccccCCCcccccCC
Confidence 3334444443 788888775
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3.3e-25 Score=234.72 Aligned_cols=173 Identities=24% Similarity=0.300 Sum_probs=76.7
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
+++|++++|.++ .+|..++ ++|++|++++|.++. +|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI 108 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEE
T ss_pred CcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEEC
Confidence 455555555555 5554443 455555555555552 232 3445555555555554 3443 3445555555
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
++|.+++. +. .+++|+.|++++|.++. +|.. +++|++|++++|.+++ +|. .+++|+.|++++|.+++
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 55554432 11 34445555555554442 2221 2444455555444442 221 12344444444444442
Q ss_pred chhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCc
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALG 214 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~ 214 (558)
+| ..+++|+.|++++|.+++.+. ..++|+.|++++|.++
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLT 214 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS
T ss_pred Cc---ccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCCccc
Confidence 22 223444444444444443222 1234444444444443
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.7e-27 Score=233.32 Aligned_cols=248 Identities=21% Similarity=0.197 Sum_probs=193.3
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCC-CCCchhhh-------CCCCCCEEEcccccCCccchHH
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFE-GNIPSSIG-------KMQGLRLLDVSSNNFAGELSQS 76 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~ 76 (558)
...++|+.|++++|.+ .+|..++.. |++|++++|.++ ...|..+. ++++|++|++++|.+++.+|..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 3456788888888888 688877763 888889888884 45565555 7889999999999988777776
Q ss_pred HH-hcCCCCCEEEccCCccCccCchhhcCC-----CccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCC--Ccc
Q 037792 77 LV-INCFSLEWLDLSNNNFVGQIFPNYMNL-----TRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGH--IPS 148 (558)
Q Consensus 77 ~~-~~l~~L~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~ 148 (558)
++ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+.++++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 53 6788999999999998876 6777766 8899999999999887778888899999999999987654 233
Q ss_pred cc--cCCCCCcEEEcccCcCcc---cchhhhcCCcccceeeccccccccccC-CCc-CCCCccEEEccCCcCcccchhhh
Q 037792 149 WM--GNFSTLQILSMSKNLLEG---NIPVQFNNLASLQILNISENNLSGSMI-STL-NLSSVEHLYLQNNALGGSIPNTF 221 (558)
Q Consensus 149 ~~--~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~-~~~~L~~L~l~~n~l~~~~~~~~ 221 (558)
.+ ..+++|++|++++|++.+ .....+..+++|+.|++++|.+++..+ ..+ .+++|++|++++|.++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 33 778899999999998873 222345677899999999998887653 223 6788999999999887 555443
Q ss_pred hCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCcc
Q 037792 222 FRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNG 276 (558)
Q Consensus 222 ~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 276 (558)
. ++|++|++++|.+++. |. +..+++|++|++++|++++
T Consensus 273 ~---------------~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P---------------AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C---------------SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred c---------------CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 2 5678888888888866 55 8899999999999999874
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=8.2e-27 Score=228.42 Aligned_cols=248 Identities=20% Similarity=0.268 Sum_probs=137.7
Q ss_pred CCCCCEEEccCCccCccCchhhcCCCccCeeeccccccc-cccchhhc-------CCCCCCEEEccCCcCCCCCcccc--
Q 037792 81 CFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFS-GKIKDGLL-------RSTELMVLDISNNRLSGHIPSWM-- 150 (558)
Q Consensus 81 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~-- 150 (558)
.++|++|++++|.+ .+|..+... |+.|++++|.+. ...+..+. ++++|++|++++|++++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34455555555555 333333322 555555555553 22333332 56677777777777776666654
Q ss_pred cCCCCCcEEEcccCcCcccchhhhcCC-----cccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCC
Q 037792 151 GNFSTLQILSMSKNLLEGNIPVQFNNL-----ASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG 224 (558)
Q Consensus 151 ~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~ 224 (558)
..+++|++|++++|++.+. |..+..+ ++|++|++++|.+.+.++..+ .+++|++|++++|++.+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------ 190 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG------ 190 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH------
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH------
Confidence 6677777777777777654 5555554 555555555555555443333 44555555555554432211
Q ss_pred CCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhc--cCCCCCCEEEcccCcCccc--cChhhhcccccccccCccccccc
Q 037792 225 SALETLDLRINEHSNLRTLLLRGNYLQGPIPHQL--CHLRKLGIMDISHNRLNGS--IPACITNMLFSRVENGYLYGFDI 300 (558)
Q Consensus 225 ~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~~~~~~~~~~~~~~ 300 (558)
.+..+ ..+++|++|++++|++++. ++..+..
T Consensus 191 -----------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~---------------- 225 (312)
T 1wwl_A 191 -----------------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAA---------------- 225 (312)
T ss_dssp -----------------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH----------------
T ss_pred -----------------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh----------------
Confidence 11122 4455555555555555410 0000000
Q ss_pred hhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCC-ccccCccC
Q 037792 301 VLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIP-SEIGDLQN 379 (558)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~ 379 (558)
.+++|+.|++++|.+++..| ..+..+++
T Consensus 226 ---------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 226 ---------------------------------------------------ARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp ---------------------------------------------------TTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred ---------------------------------------------------cCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 04556666666666665443 34455677
Q ss_pred CCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcC
Q 037792 380 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSG 440 (558)
Q Consensus 380 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~ 440 (558)
|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 255 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 255 LNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 777777777777 5555554 6777777777777754 44 6777777777777777764
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2e-27 Score=254.61 Aligned_cols=384 Identities=12% Similarity=0.091 Sum_probs=249.1
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCC-cCCCC-CchhhhCCCCCCEEEcccccCCccchH---HHHh
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKN-SFEGN-IPSSIGKMQGLRLLDVSSNNFAGELSQ---SLVI 79 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~ 79 (558)
..+++|++|++++|.+++..+..+...+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+. .+..
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 367899999999999987667677656899999999998 55432 344556899999999999997743332 2223
Q ss_pred cCCCCCEEEccCCc--cCcc-CchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCc-------CCCCCccc
Q 037792 80 NCFSLEWLDLSNNN--FVGQ-IFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNR-------LSGHIPSW 149 (558)
Q Consensus 80 ~l~~L~~L~l~~n~--i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~ 149 (558)
.+++|++|++++|. +... ....+.++++|++|++++|......+..+..+++|++|+++.+. +.+ .+..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHH
Confidence 67799999999986 3211 12223567999999999983323367778889999999976553 221 2335
Q ss_pred ccCCCCCcEE-EcccCcCcccchhhhcCCcccceeeccccccccccCCC-c-CCCCccEEEccCCcCccc-chhhhhCCC
Q 037792 150 MGNFSTLQIL-SMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIST-L-NLSSVEHLYLQNNALGGS-IPNTFFRGS 225 (558)
Q Consensus 150 ~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~-~~~~L~~L~l~~n~l~~~-~~~~~~~~~ 225 (558)
+.++++|+.| .+.+... ..++..+..+++|++|++++|.++...... . .+++|++|++++| +.+. .+.....++
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 6777778877 3433322 234444456678888888887765432221 1 5678888888877 3322 222233467
Q ss_pred CCcEEEcCC---------C------------CCCCcCEEEccCCcCCCCchhhcc-CCCCCCEEEcc--c----CcCccc
Q 037792 226 ALETLDLRI---------N------------EHSNLRTLLLRGNYLQGPIPHQLC-HLRKLGIMDIS--H----NRLNGS 277 (558)
Q Consensus 226 ~L~~L~l~~---------n------------~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~ 277 (558)
+|+.|+++. + .+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.+++.
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 788887722 1 267888888877777765555554 57888888888 3 344311
Q ss_pred cCh-h----hhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccc--cc--
Q 037792 278 IPA-C----ITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYE--SY-- 348 (558)
Q Consensus 278 ~p~-~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-- 348 (558)
... . +..++.. + .+.. .. ... .+
T Consensus 419 ~~~~~~~~l~~~~~~L--~--------------------------------------------~L~L-~~-~l~~~~~~~ 450 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDL--R--------------------------------------------RLSL-SG-LLTDKVFEY 450 (594)
T ss_dssp CTHHHHHHHHHHCTTC--C--------------------------------------------EEEC-CS-SCCHHHHHH
T ss_pred chhhHHHHHHhhCCCc--c--------------------------------------------EEee-cC-cccHHHHHH
Confidence 110 1 1111100 0 0000 00 000 00
Q ss_pred cchhhcccCEEEccCCCCCCCCCccc-cCccCCCeeeccCCcCCccchh-hhhccccCCeEeCCCCcccccCchhc-ccC
Q 037792 349 KGDILELMAGLDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQIPPQL-TEL 425 (558)
Q Consensus 349 ~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~l-~~l 425 (558)
-...+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++..+. ....+++|+.|++++|.++......+ ..+
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l 530 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKM 530 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHC
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhC
Confidence 00126789999999999976555444 6789999999999999765544 44668999999999999965444444 567
Q ss_pred CCCCEEecCCCCCc
Q 037792 426 HSLSTFDVSYNNLS 439 (558)
Q Consensus 426 ~~L~~L~l~~N~l~ 439 (558)
+.|+...+..+.-.
T Consensus 531 p~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 531 PKLNVEVIDERGAP 544 (594)
T ss_dssp TTEEEEEECSSSCG
T ss_pred CCCEEEEecCCCcc
Confidence 88877777666443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.4e-26 Score=237.48 Aligned_cols=244 Identities=22% Similarity=0.217 Sum_probs=161.3
Q ss_pred ccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecc
Q 037792 107 RLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186 (558)
Q Consensus 107 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 186 (558)
+|+.|++++|.+++..+..+..+++|++|++++|.+++..| +..+++|+.|++++|.+.+..+ .++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 44555555555544444445555555555555555543332 5555555555555555553221 2566666666
Q ss_pred ccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhcc-CCCCCC
Q 037792 187 ENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLC-HLRKLG 265 (558)
Q Consensus 187 ~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~ 265 (558)
+|.+.+.+... +++|+.|++++|.+++..|..+.. +++|+.|++++|.+++..|..+. .+++|+
T Consensus 108 ~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~-------------l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 108 NNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGC-------------RSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp SSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGG-------------GSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcC-------------CCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 66666554432 467777777777777666655554 35556666666777766676665 678888
Q ss_pred EEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeeccccc
Q 037792 266 IMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRY 345 (558)
Q Consensus 266 ~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (558)
.|++++|.+++..+..
T Consensus 173 ~L~Ls~N~l~~~~~~~---------------------------------------------------------------- 188 (487)
T 3oja_A 173 HLNLQYNFIYDVKGQV---------------------------------------------------------------- 188 (487)
T ss_dssp EEECTTSCCCEEECCC----------------------------------------------------------------
T ss_pred EEecCCCccccccccc----------------------------------------------------------------
Confidence 8888888876331100
Q ss_pred ccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCccc-ccCchhccc
Q 037792 346 ESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN-GQIPPQLTE 424 (558)
Q Consensus 346 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~l~~ 424 (558)
.+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..
T Consensus 189 ------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 189 ------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp ------CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred ------cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 06778889999998885444 48888999999999999984 6777888899999999999987 566777888
Q ss_pred CCCCCEEecC-------CCCCcCCCCC
Q 037792 425 LHSLSTFDVS-------YNNLSGPIPD 444 (558)
Q Consensus 425 l~~L~~L~l~-------~N~l~~~~p~ 444 (558)
++.|+.++++ .|+..+.++.
T Consensus 261 l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 261 NQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp CHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred CCCCcEEeccccccccCCCcccccCCc
Confidence 8888888886 6666655543
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.6e-24 Score=208.31 Aligned_cols=211 Identities=23% Similarity=0.279 Sum_probs=127.9
Q ss_pred CCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcC
Q 037792 155 TLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR 233 (558)
Q Consensus 155 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 233 (558)
+++.|++++|.+.+..+..|..+++|++|++++|.+.+.....+ .+++|++|++++|.+++..+..+..
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------- 98 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG---------- 98 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT----------
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC----------
Confidence 34555555555544444444455555555555555544444333 4455555555555555444444433
Q ss_pred CCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccc-cChhhhcccccccccCccccccchhhhcccccccC
Q 037792 234 INEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGS-IPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVS 312 (558)
Q Consensus 234 ~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (558)
+++|++|++++|.+.+..+..+..+++|++|++++|++++. +|..+.+
T Consensus 99 ---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~---------------------------- 147 (276)
T 2z62_A 99 ---LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN---------------------------- 147 (276)
T ss_dssp ---CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG----------------------------
T ss_pred ---CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc----------------------------
Confidence 23334444444445444444566666677777777666532 3444433
Q ss_pred cccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCC----eeeccCC
Q 037792 313 NYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIH----GLNLSHN 388 (558)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~N 388 (558)
+++|+.|++++|.+++..+..+..+++|+ +|++++|
T Consensus 148 ----------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 148 ----------------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred ----------------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 55667777777777665556666666666 7888888
Q ss_pred cCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcc
Q 037792 389 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQ 447 (558)
Q Consensus 389 ~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~ 447 (558)
.+++..+..+.. .+|+.|++++|.+++..+..+..+++|+.|++++|+++|.+|....
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~ 245 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 245 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHH
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHH
Confidence 888665555544 4788888988888877777778888899999999999888876443
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.4e-24 Score=207.17 Aligned_cols=199 Identities=18% Similarity=0.210 Sum_probs=150.7
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEcc
Q 037792 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLS 90 (558)
Q Consensus 11 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 90 (558)
...+.++..+. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+++
T Consensus 10 ~~~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 10 ITYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp TEEECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECT
T ss_pred ceEEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECC
Confidence 35777777887 7887653 57999999999998777778899999999999999888 5666556788899999999
Q ss_pred CCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCC-CcccccCCCCCcEEEcccCcCccc
Q 037792 91 NNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGH-IPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 91 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
+|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .|..+.++++|+.|++++|++.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 9988877777888888888888888888876666778888888888888888763 477788888888888888888766
Q ss_pred chhhhcCCcccc----eeeccccccccccCCCcCCCCccEEEccCCcCc
Q 037792 170 IPVQFNNLASLQ----ILNISENNLSGSMISTLNLSSVEHLYLQNNALG 214 (558)
Q Consensus 170 ~~~~~~~l~~L~----~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~ 214 (558)
.+..+..+++|+ .|++++|.+.+.+...+...+|++|++++|.++
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK 213 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCcee
Confidence 666666666665 555666655555444443334555555555444
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=6.2e-24 Score=205.22 Aligned_cols=113 Identities=25% Similarity=0.212 Sum_probs=57.9
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
+++|+.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|+++...+..|..+++|++|+
T Consensus 99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence 34455555555555544444555555555555555555544444455555555555555555544444445555555555
Q ss_pred cCCCCCcCCCCCCcccCCCCcccccCCCCCCCC
Q 037792 433 VSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 433 l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~ 465 (558)
+++|+++...+.......++.+.+.+|||.|+|
T Consensus 179 L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCCCcCCccChhhcccccCCeEEeCCCCccCcC
Confidence 555555532222333344555555555555555
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=8e-24 Score=202.68 Aligned_cols=202 Identities=20% Similarity=0.258 Sum_probs=165.0
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLD 88 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 88 (558)
+.++++++++.++ .+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.++ .++..++..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 5788999999998 7887654 57899999999998777778999999999999999988 77777778888999999
Q ss_pred ccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc
Q 037792 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168 (558)
Q Consensus 89 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (558)
+++|.+.+..+..+.++++|++|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 99998887666677888888888888888887777778888888888888888887666667888888888888888886
Q ss_pred cchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcc
Q 037792 169 NIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGG 215 (558)
Q Consensus 169 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~ 215 (558)
..+..|..+++|+.|++++|.++..+...+ .+++|+.|++++|.+..
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 666667778888888888888877666555 66777777777777653
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.6e-23 Score=200.52 Aligned_cols=206 Identities=23% Similarity=0.276 Sum_probs=152.6
Q ss_pred CCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcC
Q 037792 155 TLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR 233 (558)
Q Consensus 155 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 233 (558)
..+.+++++++++ .+|..+. ++++.|++++|.+...+...+ .+++|++|++++|.++...+..+..
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~---------- 83 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE---------- 83 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS----------
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC----------
Confidence 5678888888887 4554433 578888888888887776555 7788888888888887554444443
Q ss_pred CCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCc
Q 037792 234 INEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSN 313 (558)
Q Consensus 234 ~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (558)
+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..
T Consensus 84 ---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------- 131 (270)
T 2o6q_A 84 ---LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS----------------------------- 131 (270)
T ss_dssp ---CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-----------------------------
T ss_pred ---CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-----------------------------
Confidence 455566666667777666667788888888888888887544444433
Q ss_pred ccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCcc
Q 037792 314 YYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGS 393 (558)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 393 (558)
+++|+.|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus 132 ---------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 132 ---------------------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp ---------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ---------------------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 67788888888888866666677888888888888888877
Q ss_pred chhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC
Q 037792 394 IPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 394 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
.+..|..+++|++|++++|.++...+..+..+++|+.|++++|++.+.++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 677788888888888888888876666777888888888888888877664
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.1e-23 Score=201.53 Aligned_cols=203 Identities=19% Similarity=0.161 Sum_probs=169.5
Q ss_pred CCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCC
Q 037792 4 TSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFS 83 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 83 (558)
..+++++++++++++.++ .+|..++ +++++|++++|.+++..+..|.++++|++|++++|.++ .++.. ..+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTT
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCc
Confidence 457889999999999998 8887764 68999999999999888888999999999999999998 55543 67889
Q ss_pred CCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEccc
Q 037792 84 LEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSK 163 (558)
Q Consensus 84 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 163 (558)
|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|+.|++++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 999999999887 4567788888899999999888877777888888888888888888877777778888888888888
Q ss_pred CcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCc
Q 037792 164 NLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALG 214 (558)
Q Consensus 164 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~ 214 (558)
|++.+..+..|..+++|+.|++++|.++..+...+..++|+.+++++|.+.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 888866666677888888888888888877776667777888888888775
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.6e-23 Score=199.31 Aligned_cols=228 Identities=18% Similarity=0.217 Sum_probs=176.4
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLD 88 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 88 (558)
++..+++..+.+.+... .. .+++|+.|++++|.++.. ..+..+++|++|++++|.++ .++ .+..+++|++|+
T Consensus 20 ~l~~l~l~~~~~~~~~~--~~-~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~ 91 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT--QN-ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHTCSCTTSEEC--HH-HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEE
T ss_pred HHHHHHhcCcccccccc--cc-cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEE
Confidence 44455666666653322 22 267888888888888732 35788888888888888887 444 246788888888
Q ss_pred ccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc
Q 037792 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168 (558)
Q Consensus 89 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (558)
+++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 88888887766678888888888888888887777778888889999998888887777777888889999999888887
Q ss_pred cchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccC
Q 037792 169 NIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRG 247 (558)
Q Consensus 169 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~ 247 (558)
..+..+..+++|+.|++++|.+++.++..+ .+++|++|++++|.+.+. +++++.++++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--------------------~~~l~~l~~~~ 231 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--------------------CPGIRYLSEWI 231 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC--------------------TTTTHHHHHHH
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc--------------------CcHHHHHHHHH
Confidence 777777888889999999888888777655 788899999988887642 34566677777
Q ss_pred CcCCCCchhhccCCCCC
Q 037792 248 NYLQGPIPHQLCHLRKL 264 (558)
Q Consensus 248 n~l~~~~~~~~~~l~~L 264 (558)
|.+++.+|..++.++..
T Consensus 232 n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 232 NKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp HHTGGGBBCTTSCBCGG
T ss_pred HhCCCcccCcccccCCC
Confidence 88888888888776653
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.7e-23 Score=200.50 Aligned_cols=227 Identities=18% Similarity=0.206 Sum_probs=191.8
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeec
Q 037792 34 KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYL 113 (558)
Q Consensus 34 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 113 (558)
.+..+++..+.+... .....+++|+.|++++|.++ .++. +..+++|++|++++|.+.+ .+.+..+++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHD--ISALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEEC
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCC--chhhcCCCCCCEEEC
Confidence 556667777777644 34678899999999999988 5554 4789999999999999986 357899999999999
Q ss_pred cccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccc
Q 037792 114 YNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGS 193 (558)
Q Consensus 114 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 193 (558)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 99999988888889999999999999999988888899999999999999999977777789999999999999999988
Q ss_pred cCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccC
Q 037792 194 MISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHN 272 (558)
Q Consensus 194 ~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 272 (558)
++..+ .+++|++|++++|.+++..+..+..+ ++|+.|++++|.+.+ .+++|+.+++..|
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-------------~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n 232 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL-------------TSLQYIWLHDNPWDC-------TCPGIRYLSEWIN 232 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-------------TTCCEEECCSSCBCC-------CTTTTHHHHHHHH
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCC-------------cCCCEEEccCCCccc-------cCcHHHHHHHHHH
Confidence 87765 78999999999999997777666654 455566666666653 3668999999999
Q ss_pred cCccccChhhhcccc
Q 037792 273 RLNGSIPACITNMLF 287 (558)
Q Consensus 273 ~l~~~~p~~~~~l~~ 287 (558)
+++|.+|.+++.+..
T Consensus 233 ~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 233 KHSGVVRNSAGSVAP 247 (272)
T ss_dssp HTGGGBBCTTSCBCG
T ss_pred hCCCcccCcccccCC
Confidence 999999998887653
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.7e-23 Score=209.37 Aligned_cols=182 Identities=23% Similarity=0.240 Sum_probs=87.9
Q ss_pred EEcccccCCccchHHHHhcCCCCCEEEccCCccCccCc----hhhcCCC-ccCeeeccccccccccchhhcCC-----CC
Q 037792 62 LDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIF----PNYMNLT-RLWALYLYNNNFSGKIKDGLLRS-----TE 131 (558)
Q Consensus 62 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l-----~~ 131 (558)
+++++|.+++.+|. +....++|++|++++|.+.+..+ ..+..++ +|++|++++|.++...+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45666666644443 22444446666666666655444 4445555 55555555555554444444332 44
Q ss_pred CCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCC-cccceeeccccccccccCCCc-----C-CCCcc
Q 037792 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNL-ASLQILNISENNLSGSMISTL-----N-LSSVE 204 (558)
Q Consensus 132 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~-----~-~~~L~ 204 (558)
|++|++++|.+++..+..+.. .+..+ ++|+.|++++|.+++.....+ . .++|+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~--------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVK--------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHH--------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred ccEEECcCCcCChHHHHHHHH--------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence 555555555444333322111 11222 344444444444443322211 1 23566
Q ss_pred EEEccCCcCcccchhh----hhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchh----hccCC-CCCCEEEcccCcCc
Q 037792 205 HLYLQNNALGGSIPNT----FFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPH----QLCHL-RKLGIMDISHNRLN 275 (558)
Q Consensus 205 ~L~l~~n~l~~~~~~~----~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~----~~~~l-~~L~~L~l~~n~l~ 275 (558)
+|++++|.+++..... +... .++|++|++++|.+++..+. .+..+ ++|++|++++|.++
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAI------------PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTS------------CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred EEEccCCcCCHHHHHHHHHHHhcC------------CccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 6666666665433322 2221 12555556666666554443 33344 47777777777775
Q ss_pred c
Q 037792 276 G 276 (558)
Q Consensus 276 ~ 276 (558)
+
T Consensus 210 ~ 210 (362)
T 3goz_A 210 L 210 (362)
T ss_dssp G
T ss_pred h
Confidence 4
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.9e-23 Score=206.72 Aligned_cols=261 Identities=16% Similarity=0.166 Sum_probs=195.8
Q ss_pred EEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCc----hhhhCCC-CCCEEEcccccCCccchHHHHhcC-----
Q 037792 12 SLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIP----SSIGKMQ-GLRLLDVSSNNFAGELSQSLVINC----- 81 (558)
Q Consensus 12 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l----- 81 (558)
.++++.|.++|.+|... ...++|++|++++|.+++..+ .++.+++ +|++|++++|.+++..+..+ ..+
T Consensus 2 ~~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL-VQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH-HHHHHTSC
T ss_pred ccccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH-HHHHhccC
Confidence 46889999996666544 435669999999999997776 7888998 89999999999985545444 333
Q ss_pred CCCCEEEccCCccCccCchh----hcCC-CccCeeeccccccccccchhhc----C-CCCCCEEEccCCcCCCCCcc---
Q 037792 82 FSLEWLDLSNNNFVGQIFPN----YMNL-TRLWALYLYNNNFSGKIKDGLL----R-STELMVLDISNNRLSGHIPS--- 148 (558)
Q Consensus 82 ~~L~~L~l~~n~i~~~~~~~----~~~l-~~L~~L~l~~n~i~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~~~--- 148 (558)
++|++|++++|.+++..+.. +..+ ++|++|++++|.++...+..+. . .++|++|++++|.++...+.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 89999999999998766664 4444 8999999999999876665443 3 36999999999999864443
Q ss_pred -cccCCC-CCcEEEcccCcCcccchhhh----cCC-cccceeeccccccccccCC-----CcC-CCCccEEEccCCcCcc
Q 037792 149 -WMGNFS-TLQILSMSKNLLEGNIPVQF----NNL-ASLQILNISENNLSGSMIS-----TLN-LSSVEHLYLQNNALGG 215 (558)
Q Consensus 149 -~~~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~i~~~~~~-----~~~-~~~L~~L~l~~n~l~~ 215 (558)
.+..++ +|++|++++|++.+..+..+ ... ++|+.|++++|.+...... ... .++|++|++++|.+++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 345555 89999999999987766544 445 5999999999999873222 223 4699999999999987
Q ss_pred cchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCC-------chhhccCCCCCCEEEcccCcCccccChhhh
Q 037792 216 SIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGP-------IPHQLCHLRKLGIMDISHNRLNGSIPACIT 283 (558)
Q Consensus 216 ~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 283 (558)
..+..+...- ..+++|++|++++|.+.+. ++..+..+++|+.|++++|++.+..+..+.
T Consensus 240 ~~~~~l~~~~---------~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 240 PSLENLKLLK---------DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS 305 (362)
T ss_dssp CCHHHHHHTT---------TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHH
T ss_pred HHHHHHHHHH---------hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHH
Confidence 6664443220 1346677888888874432 344677889999999999999866554443
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.3e-22 Score=188.90 Aligned_cols=209 Identities=14% Similarity=0.164 Sum_probs=171.9
Q ss_pred EccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEccccc-CCccchHHHHhcCCCCCEEEccC-
Q 037792 14 DISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN-FAGELSQSLVINCFSLEWLDLSN- 91 (558)
Q Consensus 14 ~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~- 91 (558)
++..+.++ .+|. + .++|++|++++|.+++..+..|.++++|++|++++|. ++ .++...+.++++|++|++++
T Consensus 17 ~v~c~~l~-~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~ 90 (239)
T 2xwt_C 17 RVTCKDIQ-RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNT 90 (239)
T ss_dssp EEEECSCS-SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEE
T ss_pred eeEccCcc-ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCC
Confidence 33344476 8887 3 3589999999999998777789999999999999997 77 77777778999999999998
Q ss_pred CccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCC---EEEccCC-cCCCCCcccccCCCCCc-EEEcccCcC
Q 037792 92 NNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELM---VLDISNN-RLSGHIPSWMGNFSTLQ-ILSMSKNLL 166 (558)
Q Consensus 92 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l 166 (558)
|.++...+..|.++++|++|++++|.+++ .|. +..+++|+ +|++++| .++...+..|.++++|+ .|++++|++
T Consensus 91 n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 91 RNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp TTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred CCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 99987777789999999999999999986 454 78888888 9999999 89877777899999999 999999999
Q ss_pred cccchhhhcCCcccceeeccccc-cccccCCCc-CC-CCccEEEccCCcCcccchhhhhCCCCCcEEEcCC
Q 037792 167 EGNIPVQFNNLASLQILNISENN-LSGSMISTL-NL-SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRI 234 (558)
Q Consensus 167 ~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~-~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 234 (558)
....+..+.. ++|+.|++++|+ ++..+...+ .+ ++|++|++++|.+++..+. .+++|+.|++++
T Consensus 169 ~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~ 235 (239)
T 2xwt_C 169 TSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN 235 (239)
T ss_dssp CEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred cccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence 8555555655 899999999995 988877766 67 8999999999999854333 345555555554
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=9e-22 Score=186.20 Aligned_cols=183 Identities=22% Similarity=0.218 Sum_probs=150.5
Q ss_pred ccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhc
Q 037792 179 SLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQL 258 (558)
Q Consensus 179 ~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~ 258 (558)
+.+.++++++.++..+.... ++++.|++++|.+.+..+..+.. +++|++|++++|.+++..+..+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~-------------l~~L~~L~L~~n~l~~~~~~~~ 79 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRG-------------LTKLTWLNLDYNQLQTLSAGVF 79 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTT-------------CTTCCEEECTTSCCCCCCTTTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcC-------------cccCCEEECCCCcCCccCHhHh
Confidence 56677888887776665443 67888888888888766666654 4566667777777877777788
Q ss_pred cCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeee
Q 037792 259 CHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVN 338 (558)
Q Consensus 259 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (558)
..+++|++|++++|++++..+..+..
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~~~~~~------------------------------------------------------ 105 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPLGVFDH------------------------------------------------------ 105 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTT------------------------------------------------------
T ss_pred ccCCcCCEEECCCCcccccChhHhcc------------------------------------------------------
Confidence 89999999999999987554444433
Q ss_pred eecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccC
Q 037792 339 FMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418 (558)
Q Consensus 339 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~ 418 (558)
+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|+.+++|++|+|++|++++..
T Consensus 106 --------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 106 --------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred --------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 678999999999999777777899999999999999999887778999999999999999999888
Q ss_pred chhcccCCCCCEEecCCCCCcCCCCC
Q 037792 419 PPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 419 ~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
+..+..+++|+.|++++|++++..+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCCccc
Confidence 88899999999999999999987554
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=3.5e-23 Score=209.11 Aligned_cols=258 Identities=18% Similarity=0.224 Sum_probs=189.9
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCch----hhhCCCCCCEEEccccc---CCccchHHH----
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPS----SIGKMQGLRLLDVSSNN---FAGELSQSL---- 77 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~---l~~~~~~~~---- 77 (558)
.|+...++...+. .++..+.. +++|++|++++|.++...+. .+.++++|++|++++|. +++.+|..+
T Consensus 10 ~L~~~~l~~~~~~-~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~ 87 (386)
T 2ca6_A 10 SLKLDAITTEDEK-SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87 (386)
T ss_dssp CCEESSCCSHHHH-TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH
T ss_pred ccccCCCCHHHHH-HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH
Confidence 3333344444444 56666655 78999999999998865443 46789999999999864 444556554
Q ss_pred --HhcCCCCCEEEccCCccCc----cCchhhcCCCccCeeeccccccccccchhh----cCC---------CCCCEEEcc
Q 037792 78 --VINCFSLEWLDLSNNNFVG----QIFPNYMNLTRLWALYLYNNNFSGKIKDGL----LRS---------TELMVLDIS 138 (558)
Q Consensus 78 --~~~l~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~----~~l---------~~L~~L~L~ 138 (558)
+..+++|++|++++|.+.+ .++..+..+++|++|++++|.++...+..+ ..+ ++|++|+++
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 3678999999999999887 356678889999999999999865444333 333 899999999
Q ss_pred CCcCC-CCCc---ccccCCCCCcEEEcccCcCcc-----cchhhhcCCcccceeeccccccc----c-ccCCCcCCCCcc
Q 037792 139 NNRLS-GHIP---SWMGNFSTLQILSMSKNLLEG-----NIPVQFNNLASLQILNISENNLS----G-SMISTLNLSSVE 204 (558)
Q Consensus 139 ~n~l~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~i~----~-~~~~~~~~~~L~ 204 (558)
+|+++ ...+ ..+..+++|+.|++++|++.. ..+..+..+++|+.|++++|.++ . .+.....+++|+
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 99987 3334 356678899999999998873 23437788899999999999985 2 222223778999
Q ss_pred EEEccCCcCccc----chhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCC----Cchhhc-cCCCCCCEEEcccCcCc
Q 037792 205 HLYLQNNALGGS----IPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQG----PIPHQL-CHLRKLGIMDISHNRLN 275 (558)
Q Consensus 205 ~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~ 275 (558)
+|++++|.+++. ++..+.. ..+++|++|++++|.+++ .+|..+ .++++|++|++++|+++
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~-----------~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSK-----------LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHT-----------CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred EEECCCCCCchhhHHHHHHHHhh-----------ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 999999998765 3444422 025677788888888886 367766 66899999999999998
Q ss_pred cccC
Q 037792 276 GSIP 279 (558)
Q Consensus 276 ~~~p 279 (558)
+..+
T Consensus 317 ~~~~ 320 (386)
T 2ca6_A 317 EEDD 320 (386)
T ss_dssp TTSH
T ss_pred cchh
Confidence 6554
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.3e-23 Score=210.45 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=64.3
Q ss_pred hcccCEEEccCCCCC----CCCCccccCccCCCeeeccCCcCCcc----chhhhhc--cccCCeEeCCCCcccc----cC
Q 037792 353 LELMAGLDLSNNELT----GDIPSEIGDLQNIHGLNLSHNFLSGS----IPESFSN--LKMIESLDLSHNKLNG----QI 418 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~--l~~L~~L~Ls~N~i~~----~~ 418 (558)
+++|+.|++++|.++ ..+|..+..+++|++|+|++|.+++. ++..+.. +++|++|+|++|.++. .+
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 566777777777764 34566677778888888888887765 4455533 7788888888888876 35
Q ss_pred chhc-ccCCCCCEEecCCCCCcCCCC
Q 037792 419 PPQL-TELHSLSTFDVSYNNLSGPIP 443 (558)
Q Consensus 419 ~~~l-~~l~~L~~L~l~~N~l~~~~p 443 (558)
|..+ .++++|++|++++|++++..+
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHhcCCCceEEEccCCcCCcchh
Confidence 6655 557888888888888876554
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=4e-22 Score=187.21 Aligned_cols=207 Identities=17% Similarity=0.168 Sum_probs=166.0
Q ss_pred CCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCc-cCccCchhhcCCCccCeeeccc-ccccccc
Q 037792 45 FEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNN-FVGQIFPNYMNLTRLWALYLYN-NNFSGKI 122 (558)
Q Consensus 45 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~i~~~~ 122 (558)
++ .+|. +. ++|++|++++|.++ .++...+.++++|++|++++|+ ++...+..|.++++|++|++++ |.++...
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred cc-ccCC-CC--CcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 54 4555 33 48999999999998 6777667889999999999997 8776666899999999999998 8998777
Q ss_pred chhhcCCCCCCEEEccCCcCCCCCcccccCCCCCc---EEEcccC-cCcccchhhhcCCcccc-eeeccccccccccCCC
Q 037792 123 KDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQ---ILSMSKN-LLEGNIPVQFNNLASLQ-ILNISENNLSGSMIST 197 (558)
Q Consensus 123 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~i~~~~~~~ 197 (558)
+..|.++++|++|++++|.+++ +|. +..+++|+ .|++++| .+.+..+..|..+++|+ .|++++|.++..+...
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh
Confidence 7888899999999999999985 565 88888888 9999999 88877777799999999 9999999999877777
Q ss_pred cCCCCccEEEccCCc-CcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCc
Q 037792 198 LNLSSVEHLYLQNNA-LGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNR 273 (558)
Q Consensus 198 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 273 (558)
+..++|++|++++|+ +++..+..+..+ .++|+.|++++|.+++..+. .+++|+.|+++++.
T Consensus 176 ~~~~~L~~L~L~~n~~l~~i~~~~~~~l------------~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGV------------YSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTTCEEEEEECTTCTTCCEECTTTTTTC------------SBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred cCCCCCCEEEcCCCCCcccCCHHHhhcc------------ccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 755889999999995 886656666643 04566666677777744333 56788889888763
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.6e-22 Score=200.39 Aligned_cols=229 Identities=16% Similarity=0.206 Sum_probs=135.4
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc-chhhhcCCcccceeeccccccccccCCCc-CCCCccEEE
Q 037792 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN-IPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLY 207 (558)
Q Consensus 130 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~ 207 (558)
++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+ .+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4555555555555544333 33455555555555555433 44455555566666666555543322222 456666666
Q ss_pred ccCC-cCccc-chhhhhCCCCCcEEEcCCCCCCCcCEEEccCC-cCCCC-chhhccCCC-CCCEEEcccCc--Cc-cccC
Q 037792 208 LQNN-ALGGS-IPNTFFRGSALETLDLRINEHSNLRTLLLRGN-YLQGP-IPHQLCHLR-KLGIMDISHNR--LN-GSIP 279 (558)
Q Consensus 208 l~~n-~l~~~-~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n~--l~-~~~p 279 (558)
+++| .+++. .+..+..+ ++|++|++++| .+++. ++..+..++ +|++|++++|. ++ +.+|
T Consensus 149 L~~~~~l~~~~l~~~~~~~-------------~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~ 215 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSC-------------SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHC-------------TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHhcC-------------CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence 6666 45432 34444433 44455555555 55533 455667777 88888888773 33 1222
Q ss_pred hhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEE
Q 037792 280 ACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGL 359 (558)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 359 (558)
..+.. +++|+.|
T Consensus 216 ~~~~~--------------------------------------------------------------------~~~L~~L 227 (336)
T 2ast_B 216 TLVRR--------------------------------------------------------------------CPNLVHL 227 (336)
T ss_dssp HHHHH--------------------------------------------------------------------CTTCSEE
T ss_pred HHHhh--------------------------------------------------------------------CCCCCEE
Confidence 22221 6778888
Q ss_pred EccCCC-CCCCCCccccCccCCCeeeccCCc-CCccchhhhhccccCCeEeCCCCcccccCchhcccC-CCCCEEecCCC
Q 037792 360 DLSNNE-LTGDIPSEIGDLQNIHGLNLSHNF-LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL-HSLSTFDVSYN 436 (558)
Q Consensus 360 ~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l-~~L~~L~l~~N 436 (558)
++++|. +++..+..+..+++|++|++++|. ++......+..+++|+.|++++| ++. ..+..+ .+++.|++++|
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCS 303 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCC
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecc
Confidence 888887 666666778888888888888885 33333336778888999999888 442 233333 24667778899
Q ss_pred CCcCCCCC
Q 037792 437 NLSGPIPD 444 (558)
Q Consensus 437 ~l~~~~p~ 444 (558)
++++..|.
T Consensus 304 ~l~~~~~~ 311 (336)
T 2ast_B 304 HFTTIARP 311 (336)
T ss_dssp CSCCTTCS
T ss_pred cCccccCC
Confidence 98887775
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.5e-21 Score=184.69 Aligned_cols=179 Identities=22% Similarity=0.279 Sum_probs=121.5
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLD 88 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 88 (558)
+.++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEE
Confidence 4677888888887 7776654 57788888888887777777788888888888888777 45544456677777777
Q ss_pred ccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc
Q 037792 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168 (558)
Q Consensus 89 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (558)
+++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++.+
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 77777776555566667777777777777665555556666666666666666665555556666666666666666665
Q ss_pred cchhhhcCCcccceeecccccccc
Q 037792 169 NIPVQFNNLASLQILNISENNLSG 192 (558)
Q Consensus 169 ~~~~~~~~l~~L~~L~L~~n~i~~ 192 (558)
..+..+..+++|+.|++++|.+..
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeC
Confidence 555555555566666666555543
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.2e-22 Score=199.34 Aligned_cols=256 Identities=16% Similarity=0.166 Sum_probs=144.3
Q ss_pred CCCEEEcccccCCccchHHHHhcC--CCCCEEEccCCccCccCchhhcCCCccCeeeccccccccc-cchhhcCCCCCCE
Q 037792 58 GLRLLDVSSNNFAGELSQSLVINC--FSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK-IKDGLLRSTELMV 134 (558)
Q Consensus 58 ~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~ 134 (558)
.++.++++++.+. + ..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.++.. .+..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---P-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---H-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---H-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 3777888777665 2 223444 6777777777777654433 45667777777777776543 5555666677777
Q ss_pred EEccCCcCCCCCcccccCCCCCcEEEcccC-cCccc-chhhhcCCcccceeecccc-ccccccCCCcCCCCccEEEccCC
Q 037792 135 LDISNNRLSGHIPSWMGNFSTLQILSMSKN-LLEGN-IPVQFNNLASLQILNISEN-NLSGSMISTLNLSSVEHLYLQNN 211 (558)
Q Consensus 135 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~~~L~~L~l~~n 211 (558)
|++++|.+++..+..++.+++|++|++++| .+++. .+..+..+++|++|++++| .+++..
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~----------------- 185 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH----------------- 185 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH-----------------
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH-----------------
Confidence 777777666555556666666666666666 44431 3444455555555555555 444311
Q ss_pred cCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCC--cCC-CCchhhccCCCCCCEEEcccCc-CccccChhhhcccc
Q 037792 212 ALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGN--YLQ-GPIPHQLCHLRKLGIMDISHNR-LNGSIPACITNMLF 287 (558)
Q Consensus 212 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~ 287 (558)
.+..+..++ .+|++|++++| .++ +.++..+..+++|+.|++++|. +++..+..+..
T Consensus 186 -----~~~~~~~l~------------~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--- 245 (336)
T 2ast_B 186 -----VQVAVAHVS------------ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ--- 245 (336)
T ss_dssp -----HHHHHHHSC------------TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG---
T ss_pred -----HHHHHHhcc------------cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC---
Confidence 233333222 03333333333 222 2334455556666666666665 44333333322
Q ss_pred cccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCC-C
Q 037792 288 SRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNE-L 366 (558)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l 366 (558)
+++|+.|++++|. +
T Consensus 246 -----------------------------------------------------------------l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 246 -----------------------------------------------------------------LNYLQHLSLSRCYDI 260 (336)
T ss_dssp -----------------------------------------------------------------CTTCCEEECTTCTTC
T ss_pred -----------------------------------------------------------------CCCCCEeeCCCCCCC
Confidence 4566666666663 2
Q ss_pred CCCCCccccCccCCCeeeccCCcCCccchhhhhcc-ccCCeEeCCCCcccccCchhccc
Q 037792 367 TGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNL-KMIESLDLSHNKLNGQIPPQLTE 424 (558)
Q Consensus 367 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~i~~~~~~~l~~ 424 (558)
.......+..+++|++|++++| ++.. .+..+ .+++.|++++|.+++..|..+..
T Consensus 261 ~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 261 IPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 2222224667788888888887 4432 23333 34677778888888777766554
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4.2e-21 Score=187.21 Aligned_cols=172 Identities=20% Similarity=0.280 Sum_probs=112.9
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
+++|++|++++|.++. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+. +.+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 5567777777777663 33 5666777777777777776 4444 46677777777777776642 356677777777
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccc
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 191 (558)
++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 7777777643 2 26667777777777777764433 6667777777777777764322 667777777777777776
Q ss_pred cccCCCcCCCCccEEEccCCcCcccc
Q 037792 192 GSMISTLNLSSVEHLYLQNNALGGSI 217 (558)
Q Consensus 192 ~~~~~~~~~~~L~~L~l~~n~l~~~~ 217 (558)
+.++ ...+++|++|++++|.+++..
T Consensus 187 ~~~~-l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 187 DISP-LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp CCGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred cChh-hcCCCCCCEEEccCCccCccc
Confidence 5543 336677777777777776443
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=191.83 Aligned_cols=226 Identities=16% Similarity=0.115 Sum_probs=175.6
Q ss_pred CCccEEEccCCcCCCCCChhhh--hcCCCccEEEccCCcCCCCCchhh--hCCCCCCEEEcccccCCccch---HHHHhc
Q 037792 8 HGLHSLDISRNSFSGKLPQNMG--IVLPKLVYMNISKNSFEGNIPSSI--GKMQGLRLLDVSSNNFAGELS---QSLVIN 80 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~--~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~---~~~~~~ 80 (558)
..++.+.++++.+....-..+. ..+++|++|++++|.+++..|..+ .++++|++|++++|.+++..+ ...+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3568888888877531111111 125789999999999998888888 899999999999999986433 233357
Q ss_pred CCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccc--c--chhhcCCCCCCEEEccCCcCCCCCcc----cccC
Q 037792 81 CFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK--I--KDGLLRSTELMVLDISNNRLSGHIPS----WMGN 152 (558)
Q Consensus 81 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~--~--~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~ 152 (558)
+++|++|++++|.+.+..+..+.++++|++|++++|.+.+. . +..+..+++|++|++++|+++. .+. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 89999999999999988888999999999999999997642 1 2234678999999999999973 333 3577
Q ss_pred CCCCcEEEcccCcCcccchhhhcCC---cccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcE
Q 037792 153 FSTLQILSMSKNLLEGNIPVQFNNL---ASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALET 229 (558)
Q Consensus 153 l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 229 (558)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.++..+.... ++|++|++++|++++. |. +..
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~------ 292 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDE------ 292 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-TTS------
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-hhh------
Confidence 8999999999999997777777766 699999999999997665543 8999999999999853 22 343
Q ss_pred EEcCCCCCCCcCEEEccCCcCC
Q 037792 230 LDLRINEHSNLRTLLLRGNYLQ 251 (558)
Q Consensus 230 L~l~~n~~~~L~~L~l~~n~l~ 251 (558)
+++|+.|++++|.++
T Consensus 293 -------l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 293 -------LPEVDNLTLDGNPFL 307 (310)
T ss_dssp -------CCCCSCEECSSTTTS
T ss_pred -------CCCccEEECcCCCCC
Confidence 355566666666665
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=190.95 Aligned_cols=225 Identities=16% Similarity=0.158 Sum_probs=177.6
Q ss_pred CCccEEEccCCcCCCCCch---hhhCCCCCCEEEcccccCCccchHHHH-hcCCCCCEEEccCCccCccCc----hhhcC
Q 037792 33 PKLVYMNISKNSFEGNIPS---SIGKMQGLRLLDVSSNNFAGELSQSLV-INCFSLEWLDLSNNNFVGQIF----PNYMN 104 (558)
Q Consensus 33 ~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~----~~~~~ 104 (558)
..++.+.+.++.++...-. .+..+++|++|++++|.+++..|..++ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4688999988877532111 123457799999999999977776654 779999999999999986444 34568
Q ss_pred CCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCC--C--cccccCCCCCcEEEcccCcCcccchh----hhcC
Q 037792 105 LTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGH--I--PSWMGNFSTLQILSMSKNLLEGNIPV----QFNN 176 (558)
Q Consensus 105 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~ 176 (558)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|+++. .+. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 99999999999999988888999999999999999997642 1 2334688999999999999973 333 3578
Q ss_pred CcccceeeccccccccccCC-CcC---CCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCC
Q 037792 177 LASLQILNISENNLSGSMIS-TLN---LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQG 252 (558)
Q Consensus 177 l~~L~~L~L~~n~i~~~~~~-~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~ 252 (558)
+++|++|++++|.+.+..+. ... +++|++|++++|.++ .+|..+ .++|++|++++|.+++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~---------------~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL---------------PAKLRVLDLSSNRLNR 286 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC---------------CSCCSCEECCSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh---------------cCCCCEEECCCCcCCC
Confidence 89999999999999987433 333 379999999999998 555443 2567788888888885
Q ss_pred CchhhccCCCCCCEEEcccCcCcc
Q 037792 253 PIPHQLCHLRKLGIMDISHNRLNG 276 (558)
Q Consensus 253 ~~~~~~~~l~~L~~L~l~~n~l~~ 276 (558)
. |. +..+++|+.|++++|+++.
T Consensus 287 ~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 287 A-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-CC-TTSCCCCSCEECSSTTTSC
T ss_pred C-ch-hhhCCCccEEECcCCCCCC
Confidence 4 32 6788999999999999964
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=8.3e-21 Score=188.77 Aligned_cols=240 Identities=18% Similarity=0.147 Sum_probs=188.9
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCE-EEc
Q 037792 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEW-LDL 89 (558)
Q Consensus 11 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~l 89 (558)
++++.++++++ ++|..+. +++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.++...|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 68899999999 9998774 589999999999997666789999999999999999976788888888988876 556
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccC-CcCCCCCcccccCCC-CCcEEEcccCcCc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISN-NRLSGHIPSWMGNFS-TLQILSMSKNLLE 167 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 167 (558)
++|++....+..|.++++|++|++++|.+....+..+....++..+++.+ +.+....+..|.++. .++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 67899887788899999999999999999877666777777888999866 567655566677764 6889999999998
Q ss_pred ccchhhhcCCcccceeeccc-cccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEc
Q 037792 168 GNIPVQFNNLASLQILNISE-NNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLL 245 (558)
Q Consensus 168 ~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l 245 (558)
.+.+..| ...+|+++++.+ |.++.++...+ .+++|++|++++|+++...+.. +.+|+.|.+
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~----------------~~~L~~L~~ 230 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG----------------LENLKKLRA 230 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS----------------CTTCCEEEC
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh----------------hccchHhhh
Confidence 5555444 457899999974 77887777666 8899999999999998443322 234445554
Q ss_pred cCCcCCCCchhhccCCCCCCEEEcccC
Q 037792 246 RGNYLQGPIPHQLCHLRKLGIMDISHN 272 (558)
Q Consensus 246 ~~n~l~~~~~~~~~~l~~L~~L~l~~n 272 (558)
.++.-...+| .+..+++|+.+++.++
T Consensus 231 l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 231 RSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred ccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4443333455 4788899999998754
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=3.6e-20 Score=180.55 Aligned_cols=209 Identities=20% Similarity=0.285 Sum_probs=151.2
Q ss_pred EEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeecccc
Q 037792 37 YMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNN 116 (558)
Q Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 116 (558)
.+.+..+.+++.. ...++++|++|++++|.++ .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN 95 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC
Confidence 3345555555332 3456778888888888887 5653 4678888888888888875433 788888888888888
Q ss_pred ccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCC
Q 037792 117 NFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIS 196 (558)
Q Consensus 117 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 196 (558)
.+++. ..+..+++|++|++++|.+++. +. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++...
T Consensus 96 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 96 PLKNV--SAIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP- 168 (308)
T ss_dssp CCSCC--GGGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred cCCCc--hhhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-
Confidence 88753 3577888888888888888753 33 7788888888888888875433 7788888888888888876554
Q ss_pred CcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCcc
Q 037792 197 TLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNG 276 (558)
Q Consensus 197 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 276 (558)
...+++|++|++++|.+++..+ +.. +++|++|++++|.+++.. .+..+++|+.|++++|++++
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--l~~-------------l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--LAS-------------LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGG-------------CTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred hcCCCCCCEEECCCCccCcChh--hcC-------------CCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 3477888888888888875433 332 456666777777777544 37788888888888888863
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.1e-19 Score=180.61 Aligned_cols=179 Identities=18% Similarity=0.100 Sum_probs=82.6
Q ss_pred CCCEEEccCCccCccCchhhcCCCccCeeecccccccccc-chhhcCCCCCCE-EEccCCcCCCCCcccccCCCCCcEEE
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKI-KDGLLRSTELMV-LDISNNRLSGHIPSWMGNFSTLQILS 160 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~ 160 (558)
++++|++++|+++...+.+|.++++|++|++++|.+.+.+ +.+|.+++++++ +.+++|+++...|..|.++++|+.|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 4444444444444333334444444444444444443222 223444444333 33334444444444455555555555
Q ss_pred cccCcCcccchhhhcCCcccceeeccc-cccccccCCCc-C-CCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCC
Q 037792 161 MSKNLLEGNIPVQFNNLASLQILNISE-NNLSGSMISTL-N-LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEH 237 (558)
Q Consensus 161 L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~-~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 237 (558)
+++|++....+..+....++..+++.+ +.+...+...+ . ...++.|++++|.++...+.++ . .
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~-------------~ 176 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-N-------------G 176 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-T-------------T
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-c-------------c
Confidence 555555433333333334444444433 33444333333 2 2345566666666653322222 1 2
Q ss_pred CCcCEEEccC-CcCCCCchhhccCCCCCCEEEcccCcCc
Q 037792 238 SNLRTLLLRG-NYLQGPIPHQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 238 ~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 275 (558)
.+++++++.+ |.++...+..|..+++|++|++++|+++
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 3344444443 4444444455666777777777777765
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.7e-19 Score=165.40 Aligned_cols=176 Identities=18% Similarity=0.226 Sum_probs=136.7
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
-+.++++++.++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|+++ .++...+..+++|++|++
T Consensus 9 ~~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TTEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEEC
Confidence 367888888888 788665 358899999999998777777888899999999999888 677666678888888888
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence 8888886666667888888888888888887666667778888888888888886666667778888888888876552
Q ss_pred chhhhcCCcccceeeccccccccccCCC
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMIST 197 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 197 (558)
.+++|+.|+++.|.+++..+..
T Consensus 163 ------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 163 ------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp ------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred ------CCCCHHHHHHHHHhCCceeecc
Confidence 3456777777777777655443
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=1.7e-19 Score=166.58 Aligned_cols=157 Identities=20% Similarity=0.251 Sum_probs=111.8
Q ss_pred cEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhh
Q 037792 204 EHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACIT 283 (558)
Q Consensus 204 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 283 (558)
+.++++++.++ .+|..+ .++++.|++++|.+++..+..+..+++|+.|++++|++++..|..|.
T Consensus 14 ~~v~c~~~~l~-~iP~~l---------------~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~ 77 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---------------PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---------------CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CEEEcCCCCcC-cCCCcc---------------CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh
Confidence 56667766665 333322 24567777777777766666777778888888888877755555554
Q ss_pred cccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccC
Q 037792 284 NMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSN 363 (558)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 363 (558)
. +++|++|++++
T Consensus 78 ~--------------------------------------------------------------------l~~L~~L~Ls~ 89 (220)
T 2v9t_B 78 G--------------------------------------------------------------------LRSLNSLVLYG 89 (220)
T ss_dssp T--------------------------------------------------------------------CSSCCEEECCS
T ss_pred C--------------------------------------------------------------------CcCCCEEECCC
Confidence 4 56777788888
Q ss_pred CCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCC
Q 037792 364 NELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIP 443 (558)
Q Consensus 364 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 443 (558)
|.++...+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+..|..+++|+.|++++|++.+.++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 88776555667777888888888888877777777777788888888888777766677777778888888777776554
Q ss_pred C
Q 037792 444 D 444 (558)
Q Consensus 444 ~ 444 (558)
.
T Consensus 170 l 170 (220)
T 2v9t_B 170 L 170 (220)
T ss_dssp G
T ss_pred c
Confidence 3
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=6.3e-20 Score=169.51 Aligned_cols=138 Identities=20% Similarity=0.195 Sum_probs=109.4
Q ss_pred CcCEEEccCCcCCCCch-hhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccch
Q 037792 239 NLRTLLLRGNYLQGPIP-HQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNS 317 (558)
Q Consensus 239 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (558)
.+++|++++|.+++..+ ..+..+++|+.|++++|++++..+..|..
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~--------------------------------- 79 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG--------------------------------- 79 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT---------------------------------
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC---------------------------------
Confidence 44566666777765533 44677888888888888887554444443
Q ss_pred hhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhh
Q 037792 318 TVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPES 397 (558)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 397 (558)
+++|++|++++|.+++..+..|..+++|++|+|++|++++..|..
T Consensus 80 -----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 124 (220)
T 2v70_A 80 -----------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS 124 (220)
T ss_dssp -----------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS
T ss_pred -----------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhH
Confidence 677888888888888777777888889999999999998888888
Q ss_pred hhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC
Q 037792 398 FSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 398 ~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
|.++++|+.|+|++|.+++..|..|..+++|+.|++++|+++|.++.
T Consensus 125 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 88889999999999999888888888889999999999999887765
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.2e-19 Score=166.26 Aligned_cols=175 Identities=21% Similarity=0.206 Sum_probs=86.2
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccc
Q 037792 36 VYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYN 115 (558)
Q Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 115 (558)
+.++.+++.++ .+|..+ .++|++|++++|.++ .++...+..+++|++|++++|++.+..+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 44555555554 233222 235556666666555 44444445555555555555555544444445555555555555
Q ss_pred cccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccC
Q 037792 116 NNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMI 195 (558)
Q Consensus 116 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 195 (558)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 55554444444555555555555555554444444555555555555555554433344445555555555543332
Q ss_pred CCcCCCCccEEEccCCcCcccchhh
Q 037792 196 STLNLSSVEHLYLQNNALGGSIPNT 220 (558)
Q Consensus 196 ~~~~~~~L~~L~l~~n~l~~~~~~~ 220 (558)
.+++|++|+++.|.+++.+|..
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCT
T ss_pred ---CCCCHHHHHHHHHhCCceeecc
Confidence 2234444444444444444433
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=8.9e-20 Score=168.50 Aligned_cols=155 Identities=21% Similarity=0.289 Sum_probs=126.1
Q ss_pred CEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhh
Q 037792 241 RTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVE 320 (558)
Q Consensus 241 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (558)
+.++++++.++. +|..+. ++++.|++++|++++..+..|..
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~------------------------------------ 54 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSP------------------------------------ 54 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTT------------------------------------
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhC------------------------------------
Confidence 567777777773 454443 67899999999887544444433
Q ss_pred hhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhc
Q 037792 321 LLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSN 400 (558)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 400 (558)
+++|+.|++++|.+++..|..|.++++|++|+|++|.+++..+..|.+
T Consensus 55 --------------------------------l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 102 (220)
T 2v9t_B 55 --------------------------------YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG 102 (220)
T ss_dssp --------------------------------CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred --------------------------------CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccC
Confidence 678899999999998888888999999999999999999777777888
Q ss_pred cccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC-CcccCCCCcccccCCCCCCCCC
Q 037792 401 LKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 401 l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
+++|+.|+|++|.+++..|..|..+++|++|++++|++++..+. ...+..++.+++++||+.|+|.
T Consensus 103 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 99999999999999988888899999999999999999876665 4556778888899999999885
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=8.5e-20 Score=182.21 Aligned_cols=181 Identities=25% Similarity=0.201 Sum_probs=113.6
Q ss_pred ceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccC
Q 037792 181 QILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCH 260 (558)
Q Consensus 181 ~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~ 260 (558)
+.++++++.++.++.... +.++.|++++|.+++..+..+.. .+++|+.|++++|.+++..+..|..
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~------------~l~~L~~L~L~~N~i~~i~~~~~~~ 86 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPT------------RLTNLHSLLLSHNHLNFISSEAFVP 86 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSS------------CCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhh------------cccccCEEECCCCcCCccChhhccC
Confidence 467777777776655433 45777777777776555544430 2355556666666666555666777
Q ss_pred CCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeee
Q 037792 261 LRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFM 340 (558)
Q Consensus 261 l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (558)
+++|++|++++|++++..+..|..
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------------------------------- 110 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLFSD-------------------------------------------------------- 110 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTT--------------------------------------------------------
T ss_pred CCCCCEEECCCCcCCcCCHHHhCC--------------------------------------------------------
Confidence 777777777777776433333332
Q ss_pred cccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhh---hccccCCeEeCCCCccccc
Q 037792 341 TKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESF---SNLKMIESLDLSHNKLNGQ 417 (558)
Q Consensus 341 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~i~~~ 417 (558)
+++|+.|+|++|.+.+..+..|..+++|++|+|++|.+++..+..| ..+++|+.|+|++|.|+..
T Consensus 111 ------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 111 ------------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp ------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred ------------CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 5667777777777776666667777777777777777775544444 4567777777777777765
Q ss_pred CchhcccCCC--CCEEecCCCCCcCCCC
Q 037792 418 IPPQLTELHS--LSTFDVSYNNLSGPIP 443 (558)
Q Consensus 418 ~~~~l~~l~~--L~~L~l~~N~l~~~~p 443 (558)
.+..+..++. ++.|++++|++.|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CHHHhhhccHhhcceEEecCCCccCCcC
Confidence 5566666665 3667777777766544
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=7.8e-19 Score=169.56 Aligned_cols=170 Identities=22% Similarity=0.328 Sum_probs=113.0
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
+++|++|++++|.++.. + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+ .+.+..+++|++|
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC--GGGGTTCTTCCEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC--ChhhccCCCCCEE
Confidence 56677777777776643 2 4666777777777777776 3443 4667777777777777664 3346777777777
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccc
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 191 (558)
++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 7777777643 4566677777777777777644 456667777777777777764433 667777777777777776
Q ss_pred cccCCCcCCCCccEEEccCCcCcc
Q 037792 192 GSMISTLNLSSVEHLYLQNNALGG 215 (558)
Q Consensus 192 ~~~~~~~~~~~L~~L~l~~n~l~~ 215 (558)
+.+. ...+++|+.|++++|.+..
T Consensus 192 ~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 DLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp BCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred CChh-hccCCCCCEEECcCCcccC
Confidence 6432 3366777777777776653
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=4.7e-19 Score=176.83 Aligned_cols=176 Identities=22% Similarity=0.265 Sum_probs=141.5
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhh-CCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIG-KMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 11 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
++++++++.++ .+|..+. +.+++|+|++|.+++..+..+. ++++|++|++++|.++ .++...+.++++|++|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 57899999988 7887664 4688999999999877777777 8899999999999988 666666688889999999
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccc---cCCCCCcEEEcccCcC
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWM---GNFSTLQILSMSKNLL 166 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l 166 (558)
++|++....+..|.++++|+.|++++|.+....+..|..+++|+.|++++|.++...+..| ..+++|+.|+|++|++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9998887767778888899999999998887778888888889999999888886555555 5688888888888888
Q ss_pred cccchhhhcCCcc--cceeeccccccc
Q 037792 167 EGNIPVQFNNLAS--LQILNISENNLS 191 (558)
Q Consensus 167 ~~~~~~~~~~l~~--L~~L~L~~n~i~ 191 (558)
.+..+..+..++. ++.|++++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 8666667777765 377777777665
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=1.1e-18 Score=182.41 Aligned_cols=186 Identities=26% Similarity=0.403 Sum_probs=108.1
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLD 88 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 88 (558)
+|+.|++++|.++ .+|..++ ++|++|++++|.++ .+| ..+++|++|++++|.++ .+|. + .. +|++|+
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l-~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-L-PA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-C-CT--TCCEEE
T ss_pred CccEEEeCCCCCC-ccCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-h-hc--CCCEEE
Confidence 5666666666666 4665542 56666666666666 344 34566666666666666 3555 2 22 666666
Q ss_pred ccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc
Q 037792 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168 (558)
Q Consensus 89 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (558)
+++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. |. ++|+.|++++|.++
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 66666664 333 45666666666666664 333 35666666666666664 444 43 56666666666666
Q ss_pred cchhhhcCCccc-------ceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhC
Q 037792 169 NIPVQFNNLASL-------QILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFR 223 (558)
Q Consensus 169 ~~~~~~~~l~~L-------~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 223 (558)
.+|. +.. +| +.|++++|.++.++.....+++|+.|++++|.+++..|..+..
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 3443 332 44 6666666666655444445566666666666666555555443
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=5.8e-19 Score=186.75 Aligned_cols=189 Identities=21% Similarity=0.309 Sum_probs=119.2
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
+..++++.+.+.+.++. ..+++|+.|++++|.+... + .+..+++|++|+|++|.++ .++. +..+++|++|+|
T Consensus 23 l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEEC
T ss_pred HHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEEC
Confidence 34445555555522221 1256677777777776632 2 4666777777777777776 3443 466777777777
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
++|.+.+ ++.+..+++|+.|++++|.+... ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+.
T Consensus 95 s~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCC--CTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCC--ChhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 7777664 23566777777777777776642 3466677777777777777644 4566677777777777777654
Q ss_pred chhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcc
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGG 215 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~ 215 (558)
.| +..+++|+.|+|++|.+.+.+ .+..+++|+.|++++|.+.+
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred hh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 44 666777777777777776542 23366777777777776654
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=2.3e-18 Score=160.11 Aligned_cols=158 Identities=22% Similarity=0.226 Sum_probs=128.4
Q ss_pred CccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChh
Q 037792 202 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPAC 281 (558)
Q Consensus 202 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 281 (558)
..+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|++++..+..
T Consensus 20 s~~~v~c~~~~l~-~ip~~~---------------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 83 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI---------------PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV 83 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC---------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred eCCEeEccCCCcC-ccCCCC---------------CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh
Confidence 4577888887776 444322 367888888888898888888999999999999999986433333
Q ss_pred hhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEc
Q 037792 282 ITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDL 361 (558)
Q Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 361 (558)
+.. +++|+.|++
T Consensus 84 ~~~--------------------------------------------------------------------l~~L~~L~L 95 (229)
T 3e6j_A 84 FDS--------------------------------------------------------------------LTQLTVLDL 95 (229)
T ss_dssp TTT--------------------------------------------------------------------CTTCCEEEC
T ss_pred ccc--------------------------------------------------------------------CCCcCEEEC
Confidence 333 678899999
Q ss_pred cCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCC
Q 037792 362 SNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGP 441 (558)
Q Consensus 362 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~ 441 (558)
++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|+.|+|++|+++...+..+..+++|+.|++++|++.|.
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999998777777888999999999999998 6778888999999999999999977777888899999999999999987
Q ss_pred CCC
Q 037792 442 IPD 444 (558)
Q Consensus 442 ~p~ 444 (558)
++.
T Consensus 175 c~~ 177 (229)
T 3e6j_A 175 CRD 177 (229)
T ss_dssp BGG
T ss_pred cch
Confidence 764
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=159.22 Aligned_cols=153 Identities=16% Similarity=0.268 Sum_probs=120.1
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCc-hhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIP-SSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 11 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
+++++++|.++ .+|..+. +.+++|++++|.+++..+ ..|.++++|++|++++|.++ .++...+..+++|++|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEEC
Confidence 57888888888 7887654 467888888888886644 45788888888888888888 566555677888888888
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (558)
++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+..
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 8888887777778888888888888888887777777788888888888888887777778888888888888887764
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=6.3e-18 Score=163.18 Aligned_cols=164 Identities=18% Similarity=0.263 Sum_probs=94.1
Q ss_pred EEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccc
Q 037792 38 MNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNN 117 (558)
Q Consensus 38 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 117 (558)
+.+..+.+++.. .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+..+ +.++++|+.|++++|.
T Consensus 29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred HHhcCCCccccc--chhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence 344444444321 2345566666666666665 3433 3556666666666666654332 6666666666666666
Q ss_pred cccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCC
Q 037792 118 FSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIST 197 (558)
Q Consensus 118 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 197 (558)
+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++.+. ..+..+++|+.|++++|.+++..+ .
T Consensus 102 l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l 174 (291)
T 1h6t_A 102 VKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-L 174 (291)
T ss_dssp CCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-G
T ss_pred CCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-h
Confidence 6532 2356666666666666666642 3455666666666666666543 345666666666666666665544 3
Q ss_pred cCCCCccEEEccCCcCcc
Q 037792 198 LNLSSVEHLYLQNNALGG 215 (558)
Q Consensus 198 ~~~~~L~~L~l~~n~l~~ 215 (558)
..+++|++|++++|.+++
T Consensus 175 ~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp TTCTTCCEEECCSSCCCB
T ss_pred cCCCccCEEECCCCcCCC
Confidence 356666666666666653
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=5.9e-18 Score=157.36 Aligned_cols=155 Identities=18% Similarity=0.231 Sum_probs=135.1
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLD 88 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 88 (558)
.-+.++++++.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.++ .++...+..+++|++|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence 4578999999998 8998764 78999999999999888889999999999999999997 78877778899999999
Q ss_pred ccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc
Q 037792 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168 (558)
Q Consensus 89 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (558)
+++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999998777777889999999999999998 567778889999999999999987777778888999999999998874
Q ss_pred c
Q 037792 169 N 169 (558)
Q Consensus 169 ~ 169 (558)
.
T Consensus 174 ~ 174 (229)
T 3e6j_A 174 E 174 (229)
T ss_dssp T
T ss_pred C
Confidence 3
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=5.5e-18 Score=177.28 Aligned_cols=195 Identities=22% Similarity=0.256 Sum_probs=139.4
Q ss_pred CCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEc
Q 037792 58 GLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDI 137 (558)
Q Consensus 58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 137 (558)
++++|++++|.++ .+|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 7888888888877 466644 367888888888877 344 456788888888888875 444 443 8888888
Q ss_pred cCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccc
Q 037792 138 SNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSI 217 (558)
Q Consensus 138 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~ 217 (558)
++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++.+. +. ++|+.|++++|.++ .+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCS-SC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCC-ch
Confidence 8888875 454 56788888888888874 444 56788888888888887555 33 78888888888887 44
Q ss_pred hhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhccc
Q 037792 218 PNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNML 286 (558)
Q Consensus 218 ~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 286 (558)
|. +.. +| .. ..+.|+.|++++|.++ .+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus 196 p~-~~~--~L-----~~-~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RN-----HH-SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hh-----hc-ccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 44 321 22 00 1244588888888888 4666777789999999999999888888877754
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=7e-18 Score=178.45 Aligned_cols=177 Identities=21% Similarity=0.331 Sum_probs=154.9
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
..+++|+.|++++|.+. .+|. + ..+++|+.|+|++|.+++..+ +..+++|++|+|++|.++ .++. +..+++|
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~~-l-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~--l~~l~~L 111 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQG-I-QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSS--LKDLKKL 111 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCTT-G-GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCTT--STTCTTC
T ss_pred hcCCCCCEEECcCCCCC-CChH-H-ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CChh--hccCCCC
Confidence 46789999999999998 7773 4 449999999999999996654 999999999999999998 5653 5789999
Q ss_pred CEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccC
Q 037792 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 164 (558)
++|++++|.+.+ .+.+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|
T Consensus 112 ~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCC--CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 999999999986 35699999999999999999865 678999999999999999997666 899999999999999
Q ss_pred cCcccchhhhcCCcccceeeccccccccccCCC
Q 037792 165 LLEGNIPVQFNNLASLQILNISENNLSGSMIST 197 (558)
Q Consensus 165 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 197 (558)
.+.+. ..+..+++|+.|++++|.+...+...
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEECCCCCC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcCCcccc
Confidence 99854 46899999999999999998765443
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=3.2e-18 Score=154.47 Aligned_cols=114 Identities=23% Similarity=0.340 Sum_probs=96.4
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
+++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 77899999999999988899999999999999999999988888899999999999999999999999999999999999
Q ss_pred cCCCCCcCCCCCCcccCCCCcccccCCCCCCCCC
Q 037792 433 VSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 433 l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
+++|+++|.++..+....+....+.++...|..|
T Consensus 133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 9999999888754333334444455666566544
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.7e-17 Score=150.50 Aligned_cols=153 Identities=18% Similarity=0.292 Sum_probs=90.0
Q ss_pred hCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCC
Q 037792 54 GKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELM 133 (558)
Q Consensus 54 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 133 (558)
..+++|++|++++|.++ .++ . +..+++|++|++++|.+.. ++.+..+++|++|++++|.+++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 44556666666666665 444 2 3556666666666665432 33556666666666666666655555566666666
Q ss_pred EEEccCCcCCCCCcccccCCCCCcEEEcccCc-CcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCc
Q 037792 134 VLDISNNRLSGHIPSWMGNFSTLQILSMSKNL-LEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNA 212 (558)
Q Consensus 134 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~ 212 (558)
+|++++|.+++..+..++.+++|+.|++++|. +. .++ .+..+++|+.|++++|.+++.. ....+++|++|++++|+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 66666666665555666666666666666665 44 333 4566666666666666666543 22356666666666666
Q ss_pred Cc
Q 037792 213 LG 214 (558)
Q Consensus 213 l~ 214 (558)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 54
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=3.5e-20 Score=194.93 Aligned_cols=204 Identities=20% Similarity=0.189 Sum_probs=152.0
Q ss_pred cCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEE
Q 037792 151 GNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETL 230 (558)
Q Consensus 151 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 230 (558)
..+++|+.|++++|++. .+|..++.+++|+.|++++|......+. .+..+...+..|..+..+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~----------ll~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL----------LMRALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH----------HHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH----------HHHhcccccCCHHHHHHHHhcccC
Confidence 55778888888888887 6788888888888888866642110000 001112345667777777778777
Q ss_pred E-cCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhccccc
Q 037792 231 D-LRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDA 309 (558)
Q Consensus 231 ~-l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 309 (558)
+ ++.|.+..|+.+.+.+|.++...+ ..|+.|++++|++++ +|. +..
T Consensus 415 ~~l~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~------------------------- 461 (567)
T 1dce_A 415 DPMRAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQ------------------------- 461 (567)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGG-------------------------
T ss_pred cchhhcccchhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccc-------------------------
Confidence 7 666666667777777776663322 248889999988874 443 433
Q ss_pred ccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCc
Q 037792 310 YVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNF 389 (558)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 389 (558)
+++|+.|++++|.++ .+|..++.+++|+.|+|++|.
T Consensus 462 -------------------------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 462 -------------------------------------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp -------------------------------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred -------------------------------------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC
Confidence 678889999999988 778888999999999999999
Q ss_pred CCccchhhhhccccCCeEeCCCCcccccC-chhcccCCCCCEEecCCCCCcCCCCC
Q 037792 390 LSGSIPESFSNLKMIESLDLSHNKLNGQI-PPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 390 l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
+++ +| .++.+++|+.|+|++|.+++.. |..+..+++|+.|++++|++++.+|.
T Consensus 498 l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 498 LEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 986 56 7888999999999999998776 88888999999999999999887665
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.5e-17 Score=163.85 Aligned_cols=288 Identities=11% Similarity=0.047 Sum_probs=175.8
Q ss_pred CCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccC--ccCchhhcCCCccCeeeccccccccccchhhcC-----
Q 037792 56 MQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFV--GQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR----- 128 (558)
Q Consensus 56 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~----- 128 (558)
+.+++.|.++++--. .-...+...+++|+.|+|++|++. ..... .++.++.+.+..+.+ ...+|.+
T Consensus 24 ~~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhccccccc
Confidence 557888888865321 111222222788999999999887 22221 222244555555533 3456666
Q ss_pred ---CCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecccccc----ccccCCCc-CC
Q 037792 129 ---STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL----SGSMISTL-NL 200 (558)
Q Consensus 129 ---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i----~~~~~~~~-~~ 200 (558)
+++|+++++.+ .++.+.+.+|.+|++|+.+++.+|.+..+.+.+|.++.++..+....+.. .......+ .+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 88888888888 77777777888888888888888888777777888777777776655321 11222222 44
Q ss_pred CCcc-EEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccC
Q 037792 201 SSVE-HLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP 279 (558)
Q Consensus 201 ~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 279 (558)
..|+ .+.+.... .++..+.... -...+++.+.+.++-...........+++|+.+++++|+++...+
T Consensus 176 ~~L~~~i~~~~~~---~l~~~~~~~~---------~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 176 EPLETTIQVGAMG---KLEDEIMKAG---------LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD 243 (329)
T ss_dssp CCCEEEEEECTTC---CHHHHHHHTT---------CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred cccceeEEecCCC---cHHHHHhhcc---------cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH
Confidence 5555 44443321 1222221100 012344455544432221111112236777777777777763333
Q ss_pred hhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEE
Q 037792 280 ACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGL 359 (558)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 359 (558)
.+|.+ +.+|+.+
T Consensus 244 ~aF~~--------------------------------------------------------------------~~~L~~l 255 (329)
T 3sb4_A 244 FTFAQ--------------------------------------------------------------------KKYLLKI 255 (329)
T ss_dssp TTTTT--------------------------------------------------------------------CTTCCEE
T ss_pred hhhhC--------------------------------------------------------------------CCCCCEE
Confidence 34433 5667777
Q ss_pred EccCCCCCCCCCccccCccCCC-eeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEec
Q 037792 360 DLSNNELTGDIPSEIGDLQNIH-GLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDV 433 (558)
Q Consensus 360 ~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l 433 (558)
++.+| +....+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++.+.+..|.++++|+.+..
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 77776 6656667788888888 888877 676666778888888888888888888777778888888887753
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.2e-17 Score=158.75 Aligned_cols=170 Identities=19% Similarity=0.288 Sum_probs=93.1
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCE
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEW 86 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 86 (558)
+++++.++++.+.++ .++ .+. .+++|++|++++|.++. ++ .+..+++|++|++++|.++ .++. +..+++|++
T Consensus 18 l~~l~~l~l~~~~i~-~~~-~~~-~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLV-SQK-ELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEE-CHH-HHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCE
T ss_pred HHHHHHHHhcCCCcc-ccc-chh-hcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCE
Confidence 444555566666665 444 222 25666666666666653 33 5666666666666666666 3443 456666666
Q ss_pred EEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcC
Q 037792 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLL 166 (558)
Q Consensus 87 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 166 (558)
|++++|++.+. +. +.. ++|++|++++|.+++. ..+..+++|+.|++++|++++. + .+..+++|+.|++++|.+
T Consensus 90 L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 90 LSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 66666666542 11 222 5566666666665532 2355555666666666655533 2 355555555555555555
Q ss_pred cccchhhhcCCcccceeeccccccccc
Q 037792 167 EGNIPVQFNNLASLQILNISENNLSGS 193 (558)
Q Consensus 167 ~~~~~~~~~~l~~L~~L~L~~n~i~~~ 193 (558)
.+. ..+..+++|+.|++++|.+...
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch--HHhccCCCCCEEeCCCCcccCC
Confidence 533 3455555555555555555443
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.1e-17 Score=148.73 Aligned_cols=151 Identities=15% Similarity=0.230 Sum_probs=90.6
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 456666666666666 333 4666666666666666554 333 13556666666666666665555566666666666
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCc-CCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecccccc
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNR-LSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL 190 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i 190 (558)
++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|.+.+ .+ .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 666666665555666666666666666665 44 333 45666666666666666653 22 456666666666666665
Q ss_pred c
Q 037792 191 S 191 (558)
Q Consensus 191 ~ 191 (558)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=3.1e-19 Score=187.65 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=87.6
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCc-------------CCCCCchhhhCCCCCCEEE-cccccCCc
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNS-------------FEGNIPSSIGKMQGLRLLD-VSSNNFAG 71 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~-------------i~~~~~~~~~~l~~L~~L~-L~~n~l~~ 71 (558)
.+++|+.|+++.|.+. .+|..+.. +++|+.|++++|. ..+..|..++++++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred cCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 4556666666666665 66666655 6666666665543 3344455555555555555 4444332
Q ss_pred cchHHHH-----h--cCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCC
Q 037792 72 ELSQSLV-----I--NCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSG 144 (558)
Q Consensus 72 ~~~~~~~-----~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 144 (558)
.++...+ . ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 1111000 0 01134455555554443 222 444455555555555444 334444445555555555555443
Q ss_pred CCcccccCCCCCcEEEcccCcCcccc-hhhhcCCcccceeecccccccccc
Q 037792 145 HIPSWMGNFSTLQILSMSKNLLEGNI-PVQFNNLASLQILNISENNLSGSM 194 (558)
Q Consensus 145 ~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~ 194 (558)
+| .++++++|+.|++++|.+++.. |..+..+++|+.|++++|.+++.+
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 33 3444455555555555444333 444444444444444444444433
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=4.2e-17 Score=160.54 Aligned_cols=287 Identities=11% Similarity=0.051 Sum_probs=203.1
Q ss_pred CCCccEEEccCCcCCCCCchhhhC-CCCCCEEEcccccCCcc-chHHHHhcCCCCCEEEccCCccCccCchhhcC-----
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGK-MQGLRLLDVSSNNFAGE-LSQSLVINCFSLEWLDLSNNNFVGQIFPNYMN----- 104 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~----- 104 (558)
+++++.|.++++ +....-..+.. +++|++|||++|++... .+. ..++.++.+.+..+.+. ...|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I~---~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFVP---AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccccC---HHHhccccccc
Confidence 468999999875 32222234555 78999999999998721 111 12333456666666443 467788
Q ss_pred ---CCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcC----cccchhhhcCC
Q 037792 105 ---LTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLL----EGNIPVQFNNL 177 (558)
Q Consensus 105 ---l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l 177 (558)
+++|+.+++.+ .++.+...+|.++++|+.+++.+|.+....+.+|.++.++..+....+.. ......+|.++
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 99999999999 88888888999999999999999999888889999988888887765322 22233446666
Q ss_pred cccc-eeecccccc-cccc-CCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCc
Q 037792 178 ASLQ-ILNISENNL-SGSM-ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPI 254 (558)
Q Consensus 178 ~~L~-~L~L~~n~i-~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~ 254 (558)
..|+ .+.+..... .... .......++..+.+.++-.. .....+.. .+++|+.+++++|.++...
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~------------~~~~L~~l~L~~n~i~~I~ 242 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRD------------YMPNLVSLDISKTNATTIP 242 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHH------------HCTTCCEEECTTBCCCEEC
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHH------------hcCCCeEEECCCCCcceec
Confidence 6666 444433211 1100 11114566777777765322 22222221 1467778888888888777
Q ss_pred hhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccc
Q 037792 255 PHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGAL 334 (558)
Q Consensus 255 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (558)
+.+|.+|++|+.+++.+| ++...+.+|.+
T Consensus 243 ~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~-------------------------------------------------- 271 (329)
T 3sb4_A 243 DFTFAQKKYLLKIKLPHN-LKTIGQRVFSN-------------------------------------------------- 271 (329)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTT--------------------------------------------------
T ss_pred HhhhhCCCCCCEEECCcc-cceehHHHhhC--------------------------------------------------
Confidence 888999999999999987 65333444444
Q ss_pred eeeeeecccccccccchhhcccC-EEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeC
Q 037792 335 VAVNFMTKNRYESYKGDILELMA-GLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 409 (558)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 409 (558)
+.+|+ .+++.+ .++...+.+|.++++|+++++++|.++.+.+.+|.++++|+.++.
T Consensus 272 ------------------~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 272 ------------------CGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ------------------CTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ------------------ChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 67888 999988 787677899999999999999999999888889999999999874
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=8.8e-17 Score=144.94 Aligned_cols=113 Identities=25% Similarity=0.311 Sum_probs=102.6
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
.++++.|++++|.++ .+|..|..+++|++|+|++|.+++..+..|.++++|++|+|++|.|+...|..|..+++|++|+
T Consensus 30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 467899999999998 6778999999999999999999988888999999999999999999988888999999999999
Q ss_pred cCCCCCcCCCCC-CcccCCCCcccccCCCCCCCCC
Q 037792 433 VSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 433 l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
+++|+++...+. ...++.++.+++.+||+.|+|.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 999999976654 4567889999999999999995
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=6.2e-17 Score=145.97 Aligned_cols=132 Identities=21% Similarity=0.273 Sum_probs=113.5
Q ss_pred CEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhh
Q 037792 241 RTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVE 320 (558)
Q Consensus 241 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (558)
+.++++++.++ .+|..+. ++|++|++++|+++ .+|..+.+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~------------------------------------ 52 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSN------------------------------------ 52 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGG------------------------------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhc------------------------------------
Confidence 56777778777 3454432 58999999999987 55555544
Q ss_pred hhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhc
Q 037792 321 LLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSN 400 (558)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 400 (558)
+++|+.|++++|.+++..+..|.++++|++|+|++|.+++..|..|.+
T Consensus 53 --------------------------------l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~ 100 (193)
T 2wfh_A 53 --------------------------------YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG 100 (193)
T ss_dssp --------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred --------------------------------ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCC
Confidence 678999999999999888889999999999999999999888889999
Q ss_pred cccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC
Q 037792 401 LKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 401 l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
+++|+.|+|++|.|+...+..|..+++|+.|++++|++.|.+..
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 101 LKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 99999999999999988777899999999999999999987764
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.4e-16 Score=143.73 Aligned_cols=115 Identities=26% Similarity=0.356 Sum_probs=105.1
Q ss_pred hcccCEEEccCCCCCCCCCc-cccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEE
Q 037792 353 LELMAGLDLSNNELTGDIPS-EIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTF 431 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L 431 (558)
..+++.|++++|.+++..+. .|..+++|++|+|++|.+++..|..|.++++|++|+|++|+|++..+..|..+++|++|
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 34789999999999977664 58999999999999999999889999999999999999999999999999999999999
Q ss_pred ecCCCCCcCCCCC-CcccCCCCcccccCCCCCCCCCC
Q 037792 432 DVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPAI 467 (558)
Q Consensus 432 ~l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~~~ 467 (558)
++++|++++..|. ...++.++.+++++|++.|+|++
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9999999998776 56678899999999999999963
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.8e-16 Score=150.54 Aligned_cols=151 Identities=19% Similarity=0.254 Sum_probs=131.4
Q ss_pred CCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCC
Q 037792 4 TSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFS 83 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 83 (558)
+..+++|++|++++|.++ .+| .+. .+++|++|++++|.+++..+ +.++++|++|++++|+++ .++.. .. ++
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~-~l~~~--~~-~~ 107 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGI--PS-AC 107 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS-CCTTC--CC-SS
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC-CcCcc--cc-Cc
Confidence 356789999999999998 788 444 48999999999999996544 999999999999999998 56652 23 89
Q ss_pred CCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEccc
Q 037792 84 LEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSK 163 (558)
Q Consensus 84 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 163 (558)
|++|++++|.+++. +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++
T Consensus 108 L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 108 LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred ccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence 99999999999863 4699999999999999999865 3688999999999999999966 6688999999999999
Q ss_pred CcCccc
Q 037792 164 NLLEGN 169 (558)
Q Consensus 164 n~l~~~ 169 (558)
|++...
T Consensus 182 N~~~~~ 187 (263)
T 1xeu_A 182 QKCVNE 187 (263)
T ss_dssp EEEECC
T ss_pred CcccCC
Confidence 998754
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=5.8e-17 Score=175.78 Aligned_cols=191 Identities=18% Similarity=0.156 Sum_probs=112.0
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEE-----EccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCC
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYM-----NISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF 82 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L-----~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 82 (558)
++++.|++..|.+. .++..... ...|+.+ +++.|.+. ..+..+..+++|++|+|++|.+. .+|..++ .++
T Consensus 173 ~~~~~l~L~~n~~~-~~~~~~l~-~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EANQALLQ-HKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYD 247 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GCC
T ss_pred CccceEEeeCCCCC-cchhhHhh-cCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCC
Confidence 45778888888877 45544332 1222222 22233333 45677888889999999999888 7887764 788
Q ss_pred CCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcc
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMS 162 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 162 (558)
+|++|+|++|.++ .+|..|.++++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|+.+++|+.|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 8999999999888 67788888999999999999988 56888888899999999999887 667778888999999999
Q ss_pred cCcCcccchhhhcCCc-ccceeeccccccccccCCCcCCCCccEEEccCC
Q 037792 163 KNLLEGNIPVQFNNLA-SLQILNISENNLSGSMISTLNLSSVEHLYLQNN 211 (558)
Q Consensus 163 ~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n 211 (558)
+|.+.+..|..+..+. .+..+++++|.+++..+ ..|+.|+++.|
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-----~~l~~l~l~~n 369 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-----HERRFIEINTD 369 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CC---------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcCc-----cccceeEeecc
Confidence 9998887777775543 22346788888776443 45667777666
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=5.1e-16 Score=136.85 Aligned_cols=135 Identities=22% Similarity=0.245 Sum_probs=108.7
Q ss_pred CCCcCEEEccCCcCC-CCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCccc
Q 037792 237 HSNLRTLLLRGNYLQ-GPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYY 315 (558)
Q Consensus 237 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (558)
.+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 69 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK------------------------------- 69 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-------------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-------------------------------
Confidence 467788888888877 56677778888899999998888632 22211
Q ss_pred chhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccc-
Q 037792 316 NSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSI- 394 (558)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~- 394 (558)
+++|+.|++++|.+++.+|..+..+++|++|++++|.+++..
T Consensus 70 -------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 112 (168)
T 2ell_A 70 -------------------------------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112 (168)
T ss_dssp -------------------------------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGG
T ss_pred -------------------------------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchh
Confidence 678899999999998778888888999999999999998653
Q ss_pred hhhhhccccCCeEeCCCCcccccCc---hhcccCCCCCEEecCCCCCcCC
Q 037792 395 PESFSNLKMIESLDLSHNKLNGQIP---PQLTELHSLSTFDVSYNNLSGP 441 (558)
Q Consensus 395 ~~~~~~l~~L~~L~Ls~N~i~~~~~---~~l~~l~~L~~L~l~~N~l~~~ 441 (558)
+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++...
T Consensus 113 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 113 LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 2778899999999999999986665 5788999999999999988743
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=4.6e-15 Score=149.78 Aligned_cols=316 Identities=8% Similarity=0.048 Sum_probs=172.4
Q ss_pred CCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhh
Q 037792 23 KLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNY 102 (558)
Q Consensus 23 ~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 102 (558)
+|....|.+|.+|+.+.+.. .++.+...+|.++.+|+.+++.++ ++ .++...|.++.+|+.+.+..+ +......+|
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceee
Confidence 34444555555666666653 244444455666666666666433 33 455555555555555554432 222333344
Q ss_pred cCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccce
Q 037792 103 MNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQI 182 (558)
Q Consensus 103 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 182 (558)
.++..++...... +......+|.++++|+.+.+..+. .......|.++.+|+.+++..+ +..+...+|.++..|+.
T Consensus 137 ~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 137 KGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred ecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 4443322222211 122333455666666666665432 2244455666666666666544 33344455566666666
Q ss_pred eeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCC
Q 037792 183 LNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLR 262 (558)
Q Consensus 183 L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~ 262 (558)
+.+..+... .....+...+|+.+.+... ++.....++..+ ..++.+.+..+... .....|..+.
T Consensus 213 i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~-------------~~l~~~~~~~~~~~-i~~~~F~~~~ 276 (394)
T 4fs7_A 213 MEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGC-------------TDLESISIQNNKLR-IGGSLFYNCS 276 (394)
T ss_dssp CCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTC-------------SSCCEEEECCTTCE-ECSCTTTTCT
T ss_pred eecCCCceE-eehhhcccCCCceEEECCC-ceeccccccccc-------------ccceeEEcCCCcce-eecccccccc
Confidence 655544322 2222234455565555432 222233344443 44555555444332 4455677778
Q ss_pred CCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecc
Q 037792 263 KLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTK 342 (558)
Q Consensus 263 ~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (558)
.++.+....+.+. ...+..
T Consensus 277 ~l~~~~~~~~~i~---~~~F~~---------------------------------------------------------- 295 (394)
T 4fs7_A 277 GLKKVIYGSVIVP---EKTFYG---------------------------------------------------------- 295 (394)
T ss_dssp TCCEEEECSSEEC---TTTTTT----------------------------------------------------------
T ss_pred ccceeccCceeec---cccccc----------------------------------------------------------
Confidence 8887776554321 011111
Q ss_pred cccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhc
Q 037792 343 NRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL 422 (558)
Q Consensus 343 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l 422 (558)
+.+|+.+.+..+ ++.....+|.++.+|+.++|..+ ++.+...+|.++++|+.+++..+ ++.+...+|
T Consensus 296 ----------~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 362 (394)
T 4fs7_A 296 ----------CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF 362 (394)
T ss_dssp ----------CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTB
T ss_pred ----------cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHh
Confidence 456777777654 55455667888888888888644 66556678888888888888776 666777788
Q ss_pred ccCCCCCEEecCCC
Q 037792 423 TELHSLSTFDVSYN 436 (558)
Q Consensus 423 ~~l~~L~~L~l~~N 436 (558)
.++++|+.+++..+
T Consensus 363 ~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 363 QGCINLKKVELPKR 376 (394)
T ss_dssp TTCTTCCEEEEEGG
T ss_pred hCCCCCCEEEECCC
Confidence 88888888887544
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=7.2e-16 Score=132.94 Aligned_cols=129 Identities=22% Similarity=0.265 Sum_probs=103.8
Q ss_pred CCCcCEEEccCCcCC-CCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCccc
Q 037792 237 HSNLRTLLLRGNYLQ-GPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYY 315 (558)
Q Consensus 237 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (558)
.++++.|++++|.++ +.+|..+..+++|+.|++++|++++. ..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 62 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK------------------------------- 62 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence 467788888888887 56777788888999999999888643 22221
Q ss_pred chhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCcc-c
Q 037792 316 NSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGS-I 394 (558)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~ 394 (558)
+++|+.|++++|.+++.+|..+..+++|++|++++|.+++. .
T Consensus 63 -------------------------------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~ 105 (149)
T 2je0_A 63 -------------------------------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105 (149)
T ss_dssp -------------------------------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHH
T ss_pred -------------------------------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHH
Confidence 67888999999999876788788899999999999999864 3
Q ss_pred hhhhhccccCCeEeCCCCcccccCc---hhcccCCCCCEEecCC
Q 037792 395 PESFSNLKMIESLDLSHNKLNGQIP---PQLTELHSLSTFDVSY 435 (558)
Q Consensus 395 ~~~~~~l~~L~~L~Ls~N~i~~~~~---~~l~~l~~L~~L~l~~ 435 (558)
+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 106 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 106 IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 4788999999999999999987666 5788899999998864
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=8.1e-15 Score=147.38 Aligned_cols=240 Identities=10% Similarity=0.104 Sum_probs=126.9
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEE
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 87 (558)
+.++.+.+.. .++ .|+...|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++ .++...|.++++|+.+
T Consensus 113 ~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEE
T ss_pred CCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCee
Confidence 4455555543 344 5555555543 5666666544 444445555553 466666654 444 4555555666666666
Q ss_pred EccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCc
Q 037792 88 DLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLE 167 (558)
Q Consensus 88 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (558)
++.+|.++......|. ..+|+.+.+..+ +..+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+ .+.+.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCcc
Confidence 6666665544444444 456666666533 44455556666666666666543 44344455555 45666666 33344
Q ss_pred ccchhhhcCCcccceeeccccccc-----cccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcC
Q 037792 168 GNIPVQFNNLASLQILNISENNLS-----GSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLR 241 (558)
Q Consensus 168 ~~~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~ 241 (558)
.+...+|.++++|+.+.+.++.+. .+....+ .+++|+.+.+.+ .++.....+|..|++|+.+.+..+
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~------ 333 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN------ 333 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT------
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc------
Confidence 444555666666666666555443 2333333 556666666653 344444555555544444444322
Q ss_pred EEEccCCcCCCCchhhccCCCCCCEEEcccCcCc
Q 037792 242 TLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 242 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 275 (558)
++.....+|.++ +|+.+++.+|.+.
T Consensus 334 --------l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 334 --------VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp --------CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred --------ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 332334455555 5666666555443
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=2.3e-15 Score=133.86 Aligned_cols=92 Identities=23% Similarity=0.241 Sum_probs=77.9
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 67788888888888866667788889999999999999877777788889999999999999877777778889999999
Q ss_pred cCCCCCcCCCCC
Q 037792 433 VSYNNLSGPIPD 444 (558)
Q Consensus 433 l~~N~l~~~~p~ 444 (558)
+++|++++.+|.
T Consensus 131 l~~N~~~~~~~~ 142 (177)
T 2o6r_A 131 LHTNPWDCSCPR 142 (177)
T ss_dssp CCSSCBCCCHHH
T ss_pred ecCCCeeccCcc
Confidence 999999887774
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=2.2e-15 Score=132.75 Aligned_cols=132 Identities=18% Similarity=0.131 Sum_probs=59.8
Q ss_pred CCccEEEccCCcCC-CCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 33 PKLVYMNISKNSFE-GNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 33 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
++|++|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 34444444444443 333434444444444444444444 22 122344444444444444443333444444444444
Q ss_pred ecccccccccc-chhhcCCCCCCEEEccCCcCCCCCc---ccccCCCCCcEEEcccCcCc
Q 037792 112 YLYNNNFSGKI-KDGLLRSTELMVLDISNNRLSGHIP---SWMGNFSTLQILSMSKNLLE 167 (558)
Q Consensus 112 ~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~ 167 (558)
++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 44444444321 1344455555555555555553332 24455555555555555544
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.61 E-value=1.1e-14 Score=146.85 Aligned_cols=327 Identities=10% Similarity=0.033 Sum_probs=228.8
Q ss_pred CCCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCC
Q 037792 3 LTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF 82 (558)
Q Consensus 3 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 82 (558)
.|..|++|+.+.+.. .++ .|+...|.+|++|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++ .+....|.++.
T Consensus 66 AF~~c~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~~~ 140 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKGCD 140 (394)
T ss_dssp TTTTCTTEEEEECCT-TCC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTCC
T ss_pred HhhCCCCceEEEeCC-Ccc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeeccc
Confidence 478899999999975 477 899999999999999999865 66566788999999999888654 44 56666666665
Q ss_pred CCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcc
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMS 162 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 162 (558)
.++....... ......+|.++++|+.+.+.++. ..+...+|.++.+|+.+++..+ ++......|.++..|+.+.+.
T Consensus 141 ~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 141 FKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 4443333322 22445689999999999997654 4466778889999999999776 555667788899999998887
Q ss_pred cCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcC
Q 037792 163 KNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLR 241 (558)
Q Consensus 163 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~ 241 (558)
.+... . ........+|+.+.+... ++......+ .+..++.+.+..+... ....+|..+..++.+...
T Consensus 217 ~~~~~-i-~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~-------- 284 (394)
T 4fs7_A 217 NSLYY-L-GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYG-------- 284 (394)
T ss_dssp TTCCE-E-CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEEC--------
T ss_pred CCceE-e-ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccC--------
Confidence 66543 2 233344578888888654 333444444 7888999998876543 555566666655555433
Q ss_pred EEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhh
Q 037792 242 TLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVEL 321 (558)
Q Consensus 242 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (558)
... .....+..+.+|+.+.+.++ ++.....+|.+
T Consensus 285 -----~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~------------------------------------- 318 (394)
T 4fs7_A 285 -----SVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFES------------------------------------- 318 (394)
T ss_dssp -----SSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTT-------------------------------------
T ss_pred -----cee---eccccccccccccccccccc-cceechhhhcC-------------------------------------
Confidence 222 22346777888888887654 32111222222
Q ss_pred hccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhcc
Q 037792 322 LLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNL 401 (558)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 401 (558)
+.+|+.+++.++ ++.....+|.++.+|+.+++..+ ++.+...+|.++
T Consensus 319 -------------------------------c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 319 -------------------------------CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp -------------------------------CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred -------------------------------CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 566777777643 65556678889999999999876 665667789999
Q ss_pred ccCCeEeCCCCcccccCchhcccCCCCCEE
Q 037792 402 KMIESLDLSHNKLNGQIPPQLTELHSLSTF 431 (558)
Q Consensus 402 ~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L 431 (558)
++|+.+++..+ +. .+...|.++++|+.+
T Consensus 366 ~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 366 INLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 99999998765 33 234678888887765
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=2e-14 Score=144.49 Aligned_cols=82 Identities=10% Similarity=0.114 Sum_probs=47.5
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCC-CCCEE
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH-SLSTF 431 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~-~L~~L 431 (558)
+++|+.+++.+ .++......|.++++|+.+.|..| ++.+...+|.++ +|+.+++++|.+....+..|.+++ .++.|
T Consensus 299 c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l 375 (401)
T 4fdw_A 299 CPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVI 375 (401)
T ss_dssp CTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEE
T ss_pred CccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEE
Confidence 45566666663 355445556666666666666443 444455566666 666666666666655555565553 55566
Q ss_pred ecCCCC
Q 037792 432 DVSYNN 437 (558)
Q Consensus 432 ~l~~N~ 437 (558)
.+..+.
T Consensus 376 ~vp~~~ 381 (401)
T 4fdw_A 376 RVPAES 381 (401)
T ss_dssp EECGGG
T ss_pred EeCHHH
Confidence 555444
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=3.8e-15 Score=128.35 Aligned_cols=129 Identities=21% Similarity=0.277 Sum_probs=78.8
Q ss_pred cCCCccEEEccCCcCC-CCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 6 AQHGLHSLDISRNSFS-GKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~-~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
..++|+.|++++|.++ +.+|..+. .+++|++|++++|.+++. ..+.++++|++|++++|.+++.+|. .+..+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTC
T ss_pred CCccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCC
Confidence 3456777777777766 55665433 366777777777776644 5566677777777777777643443 33556677
Q ss_pred CEEEccCCccCcc-CchhhcCCCccCeeeccccccccccc---hhhcCCCCCCEEEcc
Q 037792 85 EWLDLSNNNFVGQ-IFPNYMNLTRLWALYLYNNNFSGKIK---DGLLRSTELMVLDIS 138 (558)
Q Consensus 85 ~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~L~ 138 (558)
++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777766642 22456666666666666666654433 345556666666554
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1e-14 Score=129.63 Aligned_cols=129 Identities=17% Similarity=0.171 Sum_probs=70.3
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
.+.++++++.++ .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|.++ .++...+..+++|++|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence 456777777776 6665442 46677777777776555555666666666666666666 444444455555555555
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCC
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLS 143 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 143 (558)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 555555433333444444444444444444333333333444444444444333
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=4.4e-16 Score=168.92 Aligned_cols=226 Identities=22% Similarity=0.285 Sum_probs=106.3
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEE-----cccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCC
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLD-----VSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLT 106 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~-----L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 106 (558)
-++++.|++.+|.+.. .+..+.....|+.+. +..|.+. ++...+..+++|+.|+|++|.+. .++..+.+++
T Consensus 172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~ 247 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD 247 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCC
T ss_pred CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCC
Confidence 3567888888888774 343333333333322 2233333 44555677888888888888887 5566667888
Q ss_pred ccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecc
Q 037792 107 RLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186 (558)
Q Consensus 107 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 186 (558)
+|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..|.++++|++|+|++|.+. .+|..|..+++|+.|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 8888888888887 66777888888888888888888 66878888888888888888887 567778888888888888
Q ss_pred ccccccccCCCcC-C-CCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCC
Q 037792 187 ENNLSGSMISTLN-L-SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKL 264 (558)
Q Consensus 187 ~n~i~~~~~~~~~-~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 264 (558)
+|.+++.++..+. . .....+++++|.+++.+|.. |+.|+++.|. .+......+.+..+..+..+..+
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~-----~~~~~~~~l~~~~~~~~~~l~~~ 393 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDG-----EPQREYDSLQQSTEHLATDLAKR 393 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------------------------------------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeeccc-----ccccccCCccccccchhhccccc
Confidence 8888776555441 1 12234677788877665533 3334443330 00001113333344445556666
Q ss_pred CEEEcccCcCc
Q 037792 265 GIMDISHNRLN 275 (558)
Q Consensus 265 ~~L~l~~n~l~ 275 (558)
....++.|-+.
T Consensus 394 ~~~~ls~Nil~ 404 (727)
T 4b8c_D 394 TFTVLSYNTLC 404 (727)
T ss_dssp --------CCC
T ss_pred ceeeeeccccc
Confidence 66677777654
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.5e-14 Score=128.30 Aligned_cols=130 Identities=19% Similarity=0.236 Sum_probs=74.6
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
.++++|++|++++|.++ .+|. +....++|++|++++|.+++. ..+.++++|++|++++|.++ .+|+.++..+++|
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 90 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence 45666777777777776 5543 333344677777777776643 45666667777777777666 4555555566666
Q ss_pred CEEEccCCccCccCch--hhcCCCccCeeeccccccccccch----hhcCCCCCCEEEccCCc
Q 037792 85 EWLDLSNNNFVGQIFP--NYMNLTRLWALYLYNNNFSGKIKD----GLLRSTELMVLDISNNR 141 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~ 141 (558)
++|++++|.+.. .+. .+..+++|+.|++++|.+.. .+. .+..+++|+.|++++|.
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence 666666666643 222 45555555555555555542 222 24444444444444443
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=4.2e-14 Score=124.52 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=61.3
Q ss_pred cCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCC
Q 037792 356 MAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSY 435 (558)
Q Consensus 356 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~ 435 (558)
.+.+++++|.++ .+|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|+|++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 345666666665 3443332 5566666666666655555566666666666666666655555555666666666666
Q ss_pred CCCcCCCCC-CcccCCCCcccccCCCCCCCC
Q 037792 436 NNLSGPIPD-KEQFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 436 N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~ 465 (558)
|++++..+. ...+..++.+++++||+.|+|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 666654443 344555556666666666665
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=3.8e-14 Score=125.75 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=64.1
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchh--hhhccccCCeEeCCCCcccccCch----hcccCC
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPE--SFSNLKMIESLDLSHNKLNGQIPP----QLTELH 426 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~i~~~~~~----~l~~l~ 426 (558)
+++|+.|++++|.+++..+..+..+++|++|++++|.++. +|. .+..+++|+.|++++|.++. .|. .+..++
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVP 140 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCT
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCC
Confidence 5677778888887775555556778888888888888863 444 67788888888888888874 344 477888
Q ss_pred CCCEEecCCCCCcC
Q 037792 427 SLSTFDVSYNNLSG 440 (558)
Q Consensus 427 ~L~~L~l~~N~l~~ 440 (558)
+|+.||+++|+...
T Consensus 141 ~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 141 QVRVLDFQKVKLKE 154 (176)
T ss_dssp TCSEETTEECCHHH
T ss_pred ccceeCCCcCCHHH
Confidence 88888888887653
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=5e-14 Score=124.04 Aligned_cols=93 Identities=23% Similarity=0.225 Sum_probs=86.5
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
.++++.|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 46789999999999988899999999999999999999988888899999999999999999988888899999999999
Q ss_pred cCCCCCcCCCCCC
Q 037792 433 VSYNNLSGPIPDK 445 (558)
Q Consensus 433 l~~N~l~~~~p~~ 445 (558)
+++|++++.++..
T Consensus 109 L~~N~~~c~c~~l 121 (170)
T 3g39_A 109 LLNNPWDCACSDI 121 (170)
T ss_dssp CCSSCBCTTBGGG
T ss_pred eCCCCCCCCchhH
Confidence 9999999988753
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=1.2e-13 Score=122.09 Aligned_cols=106 Identities=20% Similarity=0.270 Sum_probs=53.3
Q ss_pred CEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCC
Q 037792 357 AGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYN 436 (558)
Q Consensus 357 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N 436 (558)
+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|+.|+|++|+|++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34555555554 3333332 45555555555555544555555555555555555555444444455555555555555
Q ss_pred CCcCCCCC-CcccCCCCcccccCCCCCCCC
Q 037792 437 NLSGPIPD-KEQFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 437 ~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~ 465 (558)
++++..+. ...++.++.+++++|++.|.|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 55543333 333445555555555555554
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=1.1e-15 Score=138.56 Aligned_cols=132 Identities=21% Similarity=0.266 Sum_probs=66.0
Q ss_pred hhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCC
Q 037792 52 SIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTE 131 (558)
Q Consensus 52 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 131 (558)
.+.++++|++|++++|.++ .+| . +..+++|++|++++|.+. .++..+..+++|+.|++++|.+++ .+ .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-~l~-~-~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-KIS-S-LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-CCC-C-HHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCc-ccc-c-cccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 4555555555555555554 244 2 244555555555555554 233444444555555555555543 22 3445555
Q ss_pred CCEEEccCCcCCCCCc-ccccCCCCCcEEEcccCcCcccchh----------hhcCCcccceeeccccccc
Q 037792 132 LMVLDISNNRLSGHIP-SWMGNFSTLQILSMSKNLLEGNIPV----------QFNNLASLQILNISENNLS 191 (558)
Q Consensus 132 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~l~~L~~L~L~~n~i~ 191 (558)
|+.|++++|.++...+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|+ ++.++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 5555555555553221 2455555566666666655433332 255666677665 44443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=1.5e-13 Score=121.44 Aligned_cols=93 Identities=25% Similarity=0.243 Sum_probs=85.4
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
.++|+.|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|+|++..+..|..+++|++|+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 46789999999999988899999999999999999999987777889999999999999999987777799999999999
Q ss_pred cCCCCCcCCCCCC
Q 037792 433 VSYNNLSGPIPDK 445 (558)
Q Consensus 433 l~~N~l~~~~p~~ 445 (558)
+++|++.+.++..
T Consensus 112 L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 112 LYNNPWDCECRDI 124 (174)
T ss_dssp CCSSCBCTTBGGG
T ss_pred eCCCCcccccccH
Confidence 9999999877643
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=2.3e-15 Score=136.52 Aligned_cols=153 Identities=21% Similarity=0.273 Sum_probs=103.1
Q ss_pred cCCCccEEEccCCcCCCCCCh------hhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHh
Q 037792 6 AQHGLHSLDISRNSFSGKLPQ------NMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVI 79 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 79 (558)
....++.++++.+.+.|.+|. .+.. +++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+ .
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-~ 90 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-A 90 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHH-TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-H
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhc-CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-h
Confidence 345566666666666655554 4444 7788888888877775 45 7777778888888888777 566533 5
Q ss_pred cCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccc-hhhcCCCCCCEEEccCCcCCCCCcc----------
Q 037792 80 NCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIK-DGLLRSTELMVLDISNNRLSGHIPS---------- 148 (558)
Q Consensus 80 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---------- 148 (558)
.+++|++|++++|++++ + +.+..+++|++|++++|.++.... ..+..+++|++|++++|.+.+..|.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l-~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-C-CccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 56778888888877775 2 357777778888888887764332 4567777888888888777654443
Q ss_pred cccCCCCCcEEEcccCcCc
Q 037792 149 WMGNFSTLQILSMSKNLLE 167 (558)
Q Consensus 149 ~~~~l~~L~~L~L~~n~l~ 167 (558)
.+..+++|+.|+ ++.++
T Consensus 169 ~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 169 VVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHCSSCSEEC--CGGGT
T ss_pred HHHhCCCcEEEC--CcccC
Confidence 256677777776 44443
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.44 E-value=1.1e-11 Score=124.90 Aligned_cols=80 Identities=9% Similarity=0.235 Sum_probs=38.1
Q ss_pred cccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEec
Q 037792 354 ELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDV 433 (558)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l 433 (558)
.+|+.+.+. +.++......|.++.+|++++|..+ ++.+...+|.++.+|+++.+..+ ++.+...+|.++++|+.+++
T Consensus 288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 344444443 2233233344555555555555432 33333445555555555555433 33344445555555555555
Q ss_pred CCC
Q 037792 434 SYN 436 (558)
Q Consensus 434 ~~N 436 (558)
.++
T Consensus 365 ~~~ 367 (394)
T 4gt6_A 365 SGS 367 (394)
T ss_dssp SSC
T ss_pred CCc
Confidence 544
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.43 E-value=1.6e-11 Score=123.77 Aligned_cols=320 Identities=8% Similarity=0.097 Sum_probs=162.4
Q ss_pred CChhhhhcCC-CccEEEccCCcCCCCCchhhhCCCCCCEEEccccc---CCccchHHHHhcCCCCCEEEccCCccCccCc
Q 037792 24 LPQNMGIVLP-KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN---FAGELSQSLVINCFSLEWLDLSNNNFVGQIF 99 (558)
Q Consensus 24 ~p~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 99 (558)
|+...|.++. .|+.+.+..+ ++.+...+|.++.+|+.+.+..|. ++ .+....|.++.+|+.+.+..+ ++....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehh
Confidence 4444444443 3666666533 444555566666666666665543 33 455555555666665555432 333334
Q ss_pred hhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcc
Q 037792 100 PNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLAS 179 (558)
Q Consensus 100 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 179 (558)
..|.++.+|+.+.+..+ +..+...+|..+..|+.+.+..+ ++.....+|.+ ..|+.+.+..+-.. ....+|..+.+
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~ 206 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFA 206 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTT
T ss_pred hhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccc
Confidence 45566666666665433 22244445555566666665443 33233344433 34555555443222 33445555555
Q ss_pred cceeeccccccccccCCCc--------------CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEc
Q 037792 180 LQILNISENNLSGSMISTL--------------NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLL 245 (558)
Q Consensus 180 L~~L~L~~n~i~~~~~~~~--------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l 245 (558)
++................+ ....+..+.+.. .++.....+|..+.. |+.+.+
T Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~-------------L~~i~l 272 (394)
T 4gt6_A 207 LSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAY-------------LASVKM 272 (394)
T ss_dssp CCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSS-------------CCEEEC
T ss_pred cceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeeccc-------------ccEEec
Confidence 5555444332221111111 011112222211 111122233333333 333333
Q ss_pred cCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccC
Q 037792 246 RGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDG 325 (558)
Q Consensus 246 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (558)
.++.. .....+|.++++|+.+.+.. .++.....+|.+
T Consensus 273 p~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~----------------------------------------- 309 (394)
T 4gt6_A 273 PDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAG----------------------------------------- 309 (394)
T ss_dssp CTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTT-----------------------------------------
T ss_pred ccccc-eecCcccccccccccccCCC-cccccCceeecC-----------------------------------------
Confidence 33222 23445666677777776642 222111112221
Q ss_pred CCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCC
Q 037792 326 NDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 405 (558)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 405 (558)
+.+|+.+++..+ ++.....+|.++.+|+++.+..+ ++.+...+|.++++|+
T Consensus 310 ---------------------------c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 310 ---------------------------CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp ---------------------------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred ---------------------------CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 577888888764 66566778999999999999755 6666678999999999
Q ss_pred eEeCCCCcccccCchhcccCCCCCEEecCCCCCc
Q 037792 406 SLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439 (558)
Q Consensus 406 ~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~ 439 (558)
.+++.++.... ..+.....|+.+.+..|.+.
T Consensus 361 ~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 361 NIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp EEEESSCHHHH---HTCBCCCCC-----------
T ss_pred EEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 99999987652 45777888999988776553
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=5.3e-14 Score=140.01 Aligned_cols=167 Identities=19% Similarity=0.157 Sum_probs=90.2
Q ss_pred CCCCEEEcccccCCccchHHHH----hcCCCCCEEEccCCccCccCchhh-cCCCccCeeeccccccccccchhh-----
Q 037792 57 QGLRLLDVSSNNFAGELSQSLV----INCFSLEWLDLSNNNFVGQIFPNY-MNLTRLWALYLYNNNFSGKIKDGL----- 126 (558)
Q Consensus 57 ~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~~~~----- 126 (558)
++|++|++++|.++......+. ...++|++|++++|.+++.....+ ..+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4555666666655522111111 112456666666665543222222 234456666666666653333222
Q ss_pred cCCCCCCEEEccCCcCCCC----CcccccCCCCCcEEEcccCcCcccc----hhhhcCCcccceeeccccccccccCCCc
Q 037792 127 LRSTELMVLDISNNRLSGH----IPSWMGNFSTLQILSMSKNLLEGNI----PVQFNNLASLQILNISENNLSGSMISTL 198 (558)
Q Consensus 127 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 198 (558)
...++|++|++++|.++.. ++..+..+++|++|+|++|.+.+.. ...+...++|+.|++++|.+++.....+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2345666777776666532 2233455666777777777665322 3445566677777777777765332221
Q ss_pred -----CCCCccEEEccCCcCcccchhhhhC
Q 037792 199 -----NLSSVEHLYLQNNALGGSIPNTFFR 223 (558)
Q Consensus 199 -----~~~~L~~L~l~~n~l~~~~~~~~~~ 223 (558)
..++|++|++++|.+++.....+..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 3577888888888877655555544
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=1.8e-12 Score=128.44 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=75.2
Q ss_pred EEEccCC-CCCCCCCccccCccCCCeeeccC-CcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCC
Q 037792 358 GLDLSNN-ELTGDIPSEIGDLQNIHGLNLSH-NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSY 435 (558)
Q Consensus 358 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~ 435 (558)
.++++++ +++ .+|. +..+++|++|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4567776 676 4566 77777777777775 777766667777777777777777777777777777777777777777
Q ss_pred CCCcCCCCCCcccCCCCcccccCCCCCCCCC
Q 037792 436 NNLSGPIPDKEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 436 N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
|+|++..+.......++.+++.+|++.|+|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 7777655443222236777777777777774
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=2.4e-12 Score=127.48 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=91.6
Q ss_pred hcccCEEEccC-CCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEE
Q 037792 353 LELMAGLDLSN-NELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTF 431 (558)
Q Consensus 353 l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L 431 (558)
+.+|+.|+|++ |.+++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|++.++..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 67899999996 999988888999999999999999999999999999999999999999999988777777776 9999
Q ss_pred ecCCCCCcCCCCCCcc--cCCCCcccccCCCCCCCCC
Q 037792 432 DVSYNNLSGPIPDKEQ--FSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 432 ~l~~N~l~~~~p~~~~--~~~l~~~~~~~N~~~C~~~ 466 (558)
++++|++.+.++..+. +.......+..+.+.|..+
T Consensus 109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 9999999987663211 1111222334456667553
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=2.1e-13 Score=135.78 Aligned_cols=183 Identities=16% Similarity=0.164 Sum_probs=113.5
Q ss_pred CCCccEEEccCCcCCCCCchhhhCC-----CCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhh----
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKM-----QGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNY---- 102 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~---- 102 (558)
+++|++|++++|.++......+... ++|++|+|++|.+++.....+...+++|++|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4577788888877764433333322 5788888888877644444444456677888888887765443433
Q ss_pred -cCCCccCeeeccccccccc----cchhhcCCCCCCEEEccCCcCCCCC----cccccCCCCCcEEEcccCcCcccc---
Q 037792 103 -MNLTRLWALYLYNNNFSGK----IKDGLLRSTELMVLDISNNRLSGHI----PSWMGNFSTLQILSMSKNLLEGNI--- 170 (558)
Q Consensus 103 -~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~--- 170 (558)
...++|++|++++|.++.. .+..+...++|++|+|++|.++... +..+...++|+.|+|++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2457788888888877642 2334466778888888888776422 344566678888888888876532
Q ss_pred -hhhhcCCcccceeeccccccccccCCCc----CCC--CccEEE--ccCCcCc
Q 037792 171 -PVQFNNLASLQILNISENNLSGSMISTL----NLS--SVEHLY--LQNNALG 214 (558)
Q Consensus 171 -~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~~--~L~~L~--l~~n~l~ 214 (558)
...+...++|++|++++|.++......+ ... .++.+. +..+.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3344556788888888888875433322 112 266666 6666554
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.14 E-value=3.3e-09 Score=106.17 Aligned_cols=303 Identities=8% Similarity=0.010 Sum_probs=192.5
Q ss_pred hcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccC
Q 037792 30 IVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLW 109 (558)
Q Consensus 30 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 109 (558)
....+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++ .++...|.++ +|+.+.+..+ +......+|... +|+
T Consensus 43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD 116 (379)
T ss_dssp GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence 3356788888864 456566678888888888888654 55 6777777776 6777776543 443444456554 788
Q ss_pred eeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc------------cchhhhcCC
Q 037792 110 ALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG------------NIPVQFNNL 177 (558)
Q Consensus 110 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~l 177 (558)
.+.+..+ +......+|.. .+++.+.+..+ ++......|..+..++.+.+..+.... .....+...
T Consensus 117 ~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EEECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred cccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 8888765 33334444544 35666666543 444556667778888887776543321 111223344
Q ss_pred cccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhh
Q 037792 178 ASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQ 257 (558)
Q Consensus 178 ~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~ 257 (558)
..+..+.+...........+....+++.+.+..+ +......++..+..|+.+.+. .+ ++.....+
T Consensus 194 ~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp-------------~~-v~~I~~~a 258 (379)
T 4h09_A 194 KTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIP-------------KN-VTSIGSFL 258 (379)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEEC-------------TT-CCEECTTT
T ss_pred ccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcC-------------CC-ccEeCccc
Confidence 4555555544332222222336778888888655 343555667666666555543 32 33344567
Q ss_pred ccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceee
Q 037792 258 LCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAV 337 (558)
Q Consensus 258 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (558)
|.++.+|+.+.+..+ +.......|.+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~----------------------------------------------------- 284 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSG----------------------------------------------------- 284 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTT-----------------------------------------------------
T ss_pred cceeehhcccccccc-ceecccccccc-----------------------------------------------------
Confidence 888888998888643 32111112221
Q ss_pred eeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCccccc
Q 037792 338 NFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417 (558)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~ 417 (558)
+.+|+.+.+.++.++......|.++.+|+.+.|..+ ++.+...+|.++++|+++.+..+ ++.+
T Consensus 285 ---------------c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 285 ---------------CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp ---------------CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred ---------------ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence 678888999888888677788999999999999755 66566778999999999999765 6656
Q ss_pred CchhcccCCC
Q 037792 418 IPPQLTELHS 427 (558)
Q Consensus 418 ~~~~l~~l~~ 427 (558)
...+|.+.+.
T Consensus 348 ~~~aF~~c~~ 357 (379)
T 4h09_A 348 ESGAFEGSSI 357 (379)
T ss_dssp CTTTTTTSSC
T ss_pred chhHhhCCCC
Confidence 6777876643
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.12 E-value=4.2e-09 Score=105.42 Aligned_cols=290 Identities=10% Similarity=0.059 Sum_probs=192.5
Q ss_pred hhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCC
Q 037792 52 SIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTE 131 (558)
Q Consensus 52 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 131 (558)
.+....+|+.+.+.. .++ .|++..|.++.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +..+...+|.. .+
T Consensus 41 ~~~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TGGGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred ccccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 456667899999864 356 788888999999999999754 665666788877 6888777654 55455556655 48
Q ss_pred CCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCC-------------Cc
Q 037792 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIS-------------TL 198 (558)
Q Consensus 132 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-------------~~ 198 (558)
|+.+.+..+ +.......|.++ +++.+.+..+ +.......|..+.+++.+.+..+........ ..
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 999999765 333445566665 5666666543 3435566777888888877765432211111 11
Q ss_pred CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCcccc
Q 037792 199 NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSI 278 (558)
Q Consensus 199 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 278 (558)
....+..+.+..... .....++..+..|+.+ .+..+ +.......+..+..|+.+.+..+ ++...
T Consensus 192 ~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i-------------~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~ 255 (379)
T 4h09_A 192 AAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKI-------------TITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIG 255 (379)
T ss_dssp TTCCCSEEECCTTCC-EECTTTTTTCSSCSEE-------------ECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEEC
T ss_pred cccccccccccccee-EEeeccccccccccee-------------eeccc-eeEEccccccCCccceEEEcCCC-ccEeC
Confidence 334455555443322 2334445544444444 44333 33345567888999999998765 32111
Q ss_pred ChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCE
Q 037792 279 PACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAG 358 (558)
Q Consensus 279 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 358 (558)
..+|.+ ..+|+.
T Consensus 256 ~~aF~~--------------------------------------------------------------------~~~l~~ 267 (379)
T 4h09_A 256 SFLLQN--------------------------------------------------------------------CTALKT 267 (379)
T ss_dssp TTTTTT--------------------------------------------------------------------CTTCCE
T ss_pred ccccce--------------------------------------------------------------------eehhcc
Confidence 222222 456777
Q ss_pred EEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCC
Q 037792 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYN 436 (558)
Q Consensus 359 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N 436 (558)
+.+..+ +.......|.++++|+.+.+.++.++.+...+|.++.+|++++|..+ ++.+...+|.++++|+.+.+..+
T Consensus 268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 777543 55455678899999999999999998777789999999999999765 66677889999999999988554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=2.4e-09 Score=105.51 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=21.7
Q ss_pred hhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcc
Q 037792 172 VQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGG 215 (558)
Q Consensus 172 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~ 215 (558)
..+..+|+|+.|.+++|.-..... +..++|++|++..+.+..
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPD 207 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCH
T ss_pred HHHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCCh
Confidence 444555666666666552111111 235666666666665543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=1.2e-08 Score=100.60 Aligned_cols=148 Identities=13% Similarity=0.086 Sum_probs=94.2
Q ss_pred chhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhc--CCcccceeeccc--ccccc------
Q 037792 123 KDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFN--NLASLQILNISE--NNLSG------ 192 (558)
Q Consensus 123 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~i~~------ 192 (558)
...+..+|+|+.|++++|.-. ..+. +. +++|+.|++..+.+.......+. .+++|+.|+|+. +...+
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 345566788888888776311 1222 33 67888888888877644444443 678888888753 21111
Q ss_pred ccCCC--cCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCc----hhhccCCCCCCE
Q 037792 193 SMIST--LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPI----PHQLCHLRKLGI 266 (558)
Q Consensus 193 ~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~ 266 (558)
..... ..+++|++|++.+|.+.+..+..+...+ .+++|++|+++.|.+++.. +..+..+++|+.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~----------~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~ 311 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD----------ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS----------SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSE
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc----------cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceE
Confidence 11111 1478999999999988765555554322 2477888888888887543 333456789999
Q ss_pred EEcccCcCccccChhhh
Q 037792 267 MDISHNRLNGSIPACIT 283 (558)
Q Consensus 267 L~l~~n~l~~~~p~~~~ 283 (558)
|++++|.++...-..+.
T Consensus 312 L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 312 INMKYNYLSDEMKKELQ 328 (362)
T ss_dssp EECCSBBCCHHHHHHHH
T ss_pred EECCCCcCCHHHHHHHH
Confidence 99999988754443333
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=2.4e-08 Score=88.76 Aligned_cols=86 Identities=16% Similarity=0.293 Sum_probs=41.1
Q ss_pred cccCEEEccCCCCCCC----CCccccCccCCCeeeccCCcCCcc----chhhhhccccCCeEeC--CCCccccc----Cc
Q 037792 354 ELMAGLDLSNNELTGD----IPSEIGDLQNIHGLNLSHNFLSGS----IPESFSNLKMIESLDL--SHNKLNGQ----IP 419 (558)
Q Consensus 354 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L--s~N~i~~~----~~ 419 (558)
++|++|+|++|.+.+. +...+...+.|++|+|++|.|++. +.+.+...++|++|+| ++|.|... +.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 3444455555544422 122233344555555555555532 2333444455666666 55555432 22
Q ss_pred hhcccCCCCCEEecCCCCCc
Q 037792 420 PQLTELHSLSTFDVSYNNLS 439 (558)
Q Consensus 420 ~~l~~l~~L~~L~l~~N~l~ 439 (558)
..+...++|++|++++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 33444455666666666553
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=1.3e-07 Score=83.89 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=57.2
Q ss_pred hhhCCCCCCEEEcccc-cCCccchH---HHHhcCCCCCEEEccCCccCccC----chhhcCCCccCeeeccccccccc--
Q 037792 52 SIGKMQGLRLLDVSSN-NFAGELSQ---SLVINCFSLEWLDLSNNNFVGQI----FPNYMNLTRLWALYLYNNNFSGK-- 121 (558)
Q Consensus 52 ~~~~l~~L~~L~L~~n-~l~~~~~~---~~~~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~i~~~-- 121 (558)
.+...+.|++|+|++| .+...-.. ..+...++|++|++++|.+.+.. ...+...++|++|++++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444455555555555 44421111 11123445555555555554321 22334445566666666655432
Q ss_pred --cchhhcCCCCCCEEEc--cCCcCCCCC----cccccCCCCCcEEEcccCcCc
Q 037792 122 --IKDGLLRSTELMVLDI--SNNRLSGHI----PSWMGNFSTLQILSMSKNLLE 167 (558)
Q Consensus 122 --~~~~~~~l~~L~~L~L--~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~ 167 (558)
+...+...++|++|++ ++|.+.... ...+...+.|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334455566666666 566665322 223344566777777777654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=4.9e-07 Score=84.34 Aligned_cols=78 Identities=29% Similarity=0.345 Sum_probs=41.0
Q ss_pred hcccCEEEccCCCCCC--CCCccccCccCCCeeeccCCcCCccchhhhhccc--cCCeEeCCCCcccccCc-------hh
Q 037792 353 LELMAGLDLSNNELTG--DIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLK--MIESLDLSHNKLNGQIP-------PQ 421 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~Ls~N~i~~~~~-------~~ 421 (558)
+++|+.|+|++|.+++ .++..+..+++|+.|+|++|.|++. +.+..+. +|++|+|++|.+.+..| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4556666666666654 2334445566666666666666543 2223333 56666666666554333 23
Q ss_pred cccCCCCCEEe
Q 037792 422 LTELHSLSTFD 432 (558)
Q Consensus 422 l~~l~~L~~L~ 432 (558)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 44555555554
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.30 E-value=2.4e-07 Score=80.13 Aligned_cols=85 Identities=13% Similarity=0.098 Sum_probs=71.1
Q ss_pred cccCEEEccCCCCCCCCCccccCccCCCeeeccCCc-CCccchhhhhcc----ccCCeEeCCCCc-ccccCchhcccCCC
Q 037792 354 ELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNF-LSGSIPESFSNL----KMIESLDLSHNK-LNGQIPPQLTELHS 427 (558)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~Ls~N~-i~~~~~~~l~~l~~ 427 (558)
..|+.||+++|.+++.....+..+++|++|+|++|. +++..-..+..+ ++|++|+|++|. |+...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999999987766778899999999999996 886655666664 479999999985 88665567788999
Q ss_pred CCEEecCCCCC
Q 037792 428 LSTFDVSYNNL 438 (558)
Q Consensus 428 L~~L~l~~N~l 438 (558)
|++|++++|+-
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 99999999863
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.25 E-value=3.2e-07 Score=85.64 Aligned_cols=80 Identities=24% Similarity=0.333 Sum_probs=45.2
Q ss_pred hCCCCCCEEEcccccCCc--cchHHHHhcCCCCCEEEccCCccCccCchhhcCCC--ccCeeeccccccccccc------
Q 037792 54 GKMQGLRLLDVSSNNFAG--ELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLT--RLWALYLYNNNFSGKIK------ 123 (558)
Q Consensus 54 ~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~--~L~~L~l~~n~i~~~~~------ 123 (558)
.++++|++|+|++|++++ .++. .+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|.+.+..+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 456666666666666663 2222 235566666666666666543 2223333 66777777776654332
Q ss_pred -hhhcCCCCCCEEE
Q 037792 124 -DGLLRSTELMVLD 136 (558)
Q Consensus 124 -~~~~~l~~L~~L~ 136 (558)
..+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 2355667777765
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=1.6e-06 Score=74.87 Aligned_cols=84 Identities=8% Similarity=0.027 Sum_probs=51.7
Q ss_pred CCccEEEccCCcCCCCCchhhhCCCCCCEEEccccc-CCccchHHHHhcC----CCCCEEEccCCc-cCccCchhhcCCC
Q 037792 33 PKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN-FAGELSQSLVINC----FSLEWLDLSNNN-FVGQIFPNYMNLT 106 (558)
Q Consensus 33 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l----~~L~~L~l~~n~-i~~~~~~~~~~l~ 106 (558)
..|+.||++++.|+...-..+.++++|++|+|++|. +++.--..+ ..+ ++|++|++++|. +++.....+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 367777777777765555566777777777777774 553322333 232 357777777663 6555555556666
Q ss_pred ccCeeeccccc
Q 037792 107 RLWALYLYNNN 117 (558)
Q Consensus 107 ~L~~L~l~~n~ 117 (558)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 66666666654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.44 E-value=0.00017 Score=59.36 Aligned_cols=60 Identities=23% Similarity=0.228 Sum_probs=39.1
Q ss_pred eeeccCCcCC-ccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCC
Q 037792 382 GLNLSHNFLS-GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIP 443 (558)
Q Consensus 382 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 443 (558)
.++-+++.++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|++.+.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 4555566554 23343322 357777888887776667777777788888777777776554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.39 E-value=0.00017 Score=59.29 Aligned_cols=60 Identities=15% Similarity=0.280 Sum_probs=46.9
Q ss_pred CeEeCCCCccc-ccCchhcccCCCCCEEecCCCCCcCCCCC-CcccCCCCcccccCCCCCCCCC
Q 037792 405 ESLDLSHNKLN-GQIPPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 405 ~~L~Ls~N~i~-~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
..++.+++.++ ..+|..+. ++|++|+|++|+|+...+. ...+..++.+.+.+|||.|+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 47899999987 24554432 3699999999999965554 3556788899999999999995
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.37 E-value=0.00011 Score=64.55 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=40.2
Q ss_pred ccCEEEccCCCCCCC----CCccccCccCCCeeeccCCcCCccc----hhhhhccccCCeEeCCCCc---ccc----cCc
Q 037792 355 LMAGLDLSNNELTGD----IPSEIGDLQNIHGLNLSHNFLSGSI----PESFSNLKMIESLDLSHNK---LNG----QIP 419 (558)
Q Consensus 355 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~---i~~----~~~ 419 (558)
.|+.|+|++|.+.+. +.+.+..-+.|++|+|++|.|++.. .+.+..-+.|++|+|++|. +.. .+.
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 445555555555422 2223334455666666666665432 2333444556666665442 221 123
Q ss_pred hhcccCCCCCEEecCCCC
Q 037792 420 PQLTELHSLSTFDVSYNN 437 (558)
Q Consensus 420 ~~l~~l~~L~~L~l~~N~ 437 (558)
..+..-++|+.|+++.|.
T Consensus 151 ~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 151 MAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHCSSCCEEECCCCC
T ss_pred HHHHhCCCcCeEeccCCC
Confidence 344555666666665554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=0.00029 Score=61.93 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=59.5
Q ss_pred hhCCCCCCEEEcccc-cCCcc----chHHHHhcCCCCCEEEccCCccCccC----chhhcCCCccCeeecccccccccc-
Q 037792 53 IGKMQGLRLLDVSSN-NFAGE----LSQSLVINCFSLEWLDLSNNNFVGQI----FPNYMNLTRLWALYLYNNNFSGKI- 122 (558)
Q Consensus 53 ~~~l~~L~~L~L~~n-~l~~~----~~~~~~~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~i~~~~- 122 (558)
+.+-+.|++|+|++| .+... +.+.+ ..-..|++|+|++|.+.+.. ...+...+.|++|+|+.|.|....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 344456666666654 55421 11222 33455666666666665422 233445666777777777665322
Q ss_pred ---chhhcCCCCCCEEEccCCcC---CC----CCcccccCCCCCcEEEcccCcC
Q 037792 123 ---KDGLLRSTELMVLDISNNRL---SG----HIPSWMGNFSTLQILSMSKNLL 166 (558)
Q Consensus 123 ---~~~~~~l~~L~~L~L~~n~l---~~----~~~~~~~~l~~L~~L~L~~n~l 166 (558)
..++..-+.|++|+|++|.. .. .+...+..-+.|+.|+++.|.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 23344456677777765422 21 1223344456677777776643
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.42 E-value=8.2 Score=29.25 Aligned_cols=43 Identities=7% Similarity=-0.025 Sum_probs=22.2
Q ss_pred CCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEccc
Q 037792 23 KLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSS 66 (558)
Q Consensus 23 ~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 66 (558)
.|....|.+|..|+.+.+..+ ++.+...+|.++.+|+.+.+..
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 455555555555555555543 3334445555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.75 E-value=13 Score=28.19 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=14.2
Q ss_pred ccccCCCCCcEEEcccCcCcccchhhhcCCcccceeec
Q 037792 148 SWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNI 185 (558)
Q Consensus 148 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 185 (558)
..|.+|.+|+.+.+-.+ ++.+...+|.++.+|+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 33444444444444322 22233333444444444444
No 167
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=40.21 E-value=15 Score=21.58 Aligned_cols=8 Identities=25% Similarity=0.177 Sum_probs=3.0
Q ss_pred hhccchhh
Q 037792 516 WVNPYWRR 523 (558)
Q Consensus 516 ~~~~~~~~ 523 (558)
.+..+|+|
T Consensus 26 ~~~~~iRR 33 (35)
T 1iij_A 26 VVGILIKR 33 (35)
T ss_dssp TTTHHHHH
T ss_pred HhheEEee
Confidence 33334443
No 168
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=32.02 E-value=36 Score=20.41 Aligned_cols=18 Identities=17% Similarity=0.021 Sum_probs=8.5
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 037792 497 YWSFVASCVTVMLGLLAI 514 (558)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~ 514 (558)
..+++++.++++.++...
T Consensus 13 IAGiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHH
Confidence 344555555544444433
No 169
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=22.30 E-value=48 Score=22.49 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q 037792 499 SFVASCVTVMLGLLAIL 515 (558)
Q Consensus 499 ~~~~~~~~~~~~~~~~~ 515 (558)
+++.++.+++++.++++
T Consensus 13 vlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 33444444444444444
Done!