BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037794
         (293 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FYG|A Chain A, Crystal Structure Of Nsp10 From Sars Coronavirus
          Length = 128

 Score = 31.2 bits (69), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 200 ELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWS 244
           E N D+E  G     L+    ID P  K FC+  G  +++P   +
Sbjct: 56  EANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCA 100


>pdb|2XYV|B Chain B, Crystal Structure Of The Nsp16 Nsp10 Sars Coronavirus
           Complex
          Length = 122

 Score = 30.8 bits (68), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 193 EEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMP 240
           + +    E N D+E  G     L+    ID P  K FC+  G  +++P
Sbjct: 44  QAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKFVQIP 91


>pdb|2XYQ|B Chain B, Crystal Structure Of The Nsp16 Nsp10 Sars Coronavirus
           Complex
 pdb|2XYR|B Chain B, Crystal Structure Of The Nsp16 Nsp10 Sars Coronavirus
           Complex
          Length = 122

 Score = 30.8 bits (68), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 193 EEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMP 240
           + +    E N D+E  G     L+    ID P  K FC+  G  +++P
Sbjct: 44  QAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP 91


>pdb|2G9T|A Chain A, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|B Chain B, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|C Chain C, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|D Chain D, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|E Chain E, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|F Chain F, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|G Chain G, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|H Chain H, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|I Chain I, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|J Chain J, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|K Chain K, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|L Chain L, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|M Chain M, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|N Chain N, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|O Chain O, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|P Chain P, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|Q Chain Q, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|R Chain R, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|S Chain S, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|T Chain T, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|U Chain U, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|V Chain V, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|W Chain W, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2G9T|X Chain X, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
 pdb|2GA6|A Chain A, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|B Chain B, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|C Chain C, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|D Chain D, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|E Chain E, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|F Chain F, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|G Chain G, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|H Chain H, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|I Chain I, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|J Chain J, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|K Chain K, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|L Chain L, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|M Chain M, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|N Chain N, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|O Chain O, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|P Chain P, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|Q Chain Q, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|R Chain R, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|S Chain S, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|T Chain T, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|U Chain U, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|V Chain V, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|W Chain W, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
 pdb|2GA6|X Chain X, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
           Additive
          Length = 152

 Score = 30.8 bits (68), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 193 EEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWS 244
           + +    E N D+E  G     L+    ID P  K FC+  G  +++P   +
Sbjct: 53  QAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCA 104


>pdb|3R24|B Chain B, Crystal Structure Of Nsp10/nsp16 Complex Of Sars
           Coronavirus" If Possible
          Length = 155

 Score = 30.8 bits (68), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 193 EEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMP 240
           + +    E N D+E  G     L+    ID P  K FC+  G  +++P
Sbjct: 56  QAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP 103


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,843,047
Number of Sequences: 62578
Number of extensions: 353203
Number of successful extensions: 702
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 697
Number of HSP's gapped (non-prelim): 7
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)