Query 037794
Match_columns 293
No_of_seqs 123 out of 1492
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:27:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.7 9.9E-18 2.1E-22 170.1 13.5 84 3-98 632-715 (1153)
2 PLN03210 Resistant to P. syrin 99.7 1.7E-16 3.7E-21 161.2 13.8 230 2-256 654-909 (1153)
3 PLN00113 leucine-rich repeat r 99.5 9.3E-14 2E-18 139.9 11.5 83 3-97 116-198 (968)
4 PLN00113 leucine-rich repeat r 99.5 6.6E-14 1.4E-18 140.9 10.1 86 2-97 137-222 (968)
5 KOG4341 F-box protein containi 99.1 1.7E-12 3.6E-17 113.3 -4.0 236 5-256 164-417 (483)
6 KOG0444 Cytoskeletal regulator 99.0 1.4E-11 3E-16 112.8 -5.7 160 59-255 218-377 (1255)
7 KOG4658 Apoptotic ATPase [Sign 98.8 2.6E-09 5.7E-14 105.0 4.6 239 3-260 569-848 (889)
8 KOG0444 Cytoskeletal regulator 98.8 1.5E-10 3.3E-15 106.1 -3.7 185 59-266 99-317 (1255)
9 KOG4194 Membrane glycoprotein 98.8 8.7E-10 1.9E-14 100.4 1.0 35 213-250 392-426 (873)
10 KOG0617 Ras suppressor protein 98.8 1.3E-10 2.9E-15 90.4 -4.3 168 60-266 30-197 (264)
11 KOG4194 Membrane glycoprotein 98.8 3.6E-09 7.7E-14 96.5 3.8 40 213-256 293-332 (873)
12 PRK15370 E3 ubiquitin-protein 98.8 1.5E-08 3.3E-13 98.1 8.2 16 240-256 367-382 (754)
13 PRK15387 E3 ubiquitin-protein 98.8 4E-08 8.7E-13 95.1 10.6 57 5-80 222-278 (788)
14 PRK15370 E3 ubiquitin-protein 98.8 8.4E-09 1.8E-13 99.9 5.7 197 5-264 199-410 (754)
15 KOG3207 Beta-tubulin folding c 98.7 5.6E-09 1.2E-13 92.1 1.7 212 3-248 119-334 (505)
16 PRK15387 E3 ubiquitin-protein 98.7 1.4E-07 3.1E-12 91.4 11.1 200 7-260 203-420 (788)
17 KOG0472 Leucine-rich repeat pr 98.7 4.2E-11 9E-16 104.4 -12.1 223 3-265 66-298 (565)
18 KOG4341 F-box protein containi 98.7 4.3E-10 9.3E-15 98.5 -6.2 233 6-255 139-387 (483)
19 PRK15386 type III secretion pr 98.6 3.2E-07 6.8E-12 82.2 8.9 54 35-97 50-104 (426)
20 KOG4658 Apoptotic ATPase [Sign 98.5 5.6E-08 1.2E-12 95.7 3.9 41 212-256 746-786 (889)
21 KOG0618 Serine/threonine phosp 98.4 3.9E-08 8.5E-13 94.0 -0.4 45 149-196 379-423 (1081)
22 cd00116 LRR_RI Leucine-rich re 98.4 4.4E-08 9.5E-13 86.2 -1.0 228 4-254 22-263 (319)
23 cd00116 LRR_RI Leucine-rich re 98.4 1.5E-07 3.2E-12 82.8 2.0 231 3-256 49-293 (319)
24 KOG0617 Ras suppressor protein 98.3 1.6E-08 3.5E-13 79.0 -4.2 157 36-230 32-189 (264)
25 PRK15386 type III secretion pr 98.3 1.7E-06 3.8E-11 77.5 8.1 30 240-269 156-187 (426)
26 KOG0472 Leucine-rich repeat pr 98.3 5.8E-09 1.3E-13 91.2 -7.8 217 2-256 88-312 (565)
27 KOG0618 Serine/threonine phosp 98.3 1.4E-07 3.1E-12 90.2 0.8 215 36-283 218-454 (1081)
28 KOG2120 SCF ubiquitin ligase, 98.3 1.1E-08 2.5E-13 86.2 -6.9 117 121-250 256-373 (419)
29 KOG2120 SCF ubiquitin ligase, 98.2 1E-07 2.2E-12 80.6 -2.9 164 35-224 208-374 (419)
30 KOG1947 Leucine rich repeat pr 98.2 4.1E-07 8.9E-12 84.5 -0.1 41 214-256 402-443 (482)
31 KOG3207 Beta-tubulin folding c 98.1 1.3E-06 2.9E-11 77.4 2.9 165 61-256 119-286 (505)
32 KOG4237 Extracellular matrix p 98.0 7.9E-07 1.7E-11 77.9 -1.8 78 8-95 70-148 (498)
33 PF14580 LRR_9: Leucine-rich r 97.9 1E-05 2.2E-10 64.7 3.8 84 124-224 41-124 (175)
34 KOG1947 Leucine rich repeat pr 97.9 1.1E-06 2.3E-11 81.7 -2.3 139 36-188 187-330 (482)
35 PF13855 LRR_8: Leucine rich r 97.9 3.2E-05 6.9E-10 50.5 4.8 58 126-189 2-59 (61)
36 PF13855 LRR_8: Leucine rich r 97.7 6.8E-05 1.5E-09 49.0 4.5 39 154-195 2-40 (61)
37 PF14580 LRR_9: Leucine-rich r 97.6 5.6E-05 1.2E-09 60.5 3.5 108 122-251 16-124 (175)
38 KOG4237 Extracellular matrix p 97.4 1.2E-05 2.6E-10 70.7 -2.6 62 2-72 88-149 (498)
39 KOG3665 ZYG-1-like serine/thre 97.4 4E-05 8.6E-10 74.1 0.3 160 37-222 83-259 (699)
40 KOG3665 ZYG-1-like serine/thre 97.3 2.9E-05 6.4E-10 75.0 -1.7 133 37-188 122-259 (699)
41 KOG1259 Nischarin, modulator o 97.0 0.00041 8.8E-09 59.3 2.7 179 61-256 212-414 (490)
42 KOG1909 Ran GTPase-activating 97.0 7.1E-05 1.5E-09 64.9 -2.5 90 4-97 29-130 (382)
43 COG4886 Leucine-rich repeat (L 96.9 0.0012 2.5E-08 60.1 4.7 172 36-250 115-287 (394)
44 PLN03150 hypothetical protein; 96.9 0.0019 4.2E-08 62.3 6.4 69 116-190 433-501 (623)
45 PLN03150 hypothetical protein; 96.7 0.0026 5.7E-08 61.4 5.4 111 38-167 419-529 (623)
46 COG4886 Leucine-rich repeat (L 96.6 0.002 4.4E-08 58.6 3.5 170 5-222 116-286 (394)
47 KOG1259 Nischarin, modulator o 96.5 0.00075 1.6E-08 57.8 0.6 110 153-284 284-402 (490)
48 PF12799 LRR_4: Leucine Rich r 96.5 0.004 8.6E-08 37.6 3.3 39 213-256 1-39 (44)
49 KOG0532 Leucine-rich repeat (L 96.4 0.00017 3.6E-09 66.5 -4.7 157 61-260 96-252 (722)
50 KOG3864 Uncharacterized conser 96.3 0.00065 1.4E-08 54.8 -1.0 72 175-256 121-192 (221)
51 KOG0532 Leucine-rich repeat (L 95.9 0.0016 3.5E-08 60.2 -0.7 125 36-189 120-244 (722)
52 PF12799 LRR_4: Leucine Rich r 95.7 0.013 2.9E-07 35.3 3.1 33 64-97 2-34 (44)
53 KOG3864 Uncharacterized conser 95.7 0.0013 2.8E-08 53.1 -1.9 60 36-95 124-184 (221)
54 PF00560 LRR_1: Leucine Rich R 95.5 0.0083 1.8E-07 30.3 1.3 22 241-264 1-22 (22)
55 KOG2982 Uncharacterized conser 95.1 0.011 2.4E-07 50.8 1.7 68 116-188 88-155 (418)
56 PF13306 LRR_5: Leucine rich r 94.7 0.27 5.9E-06 36.6 8.3 55 125-187 12-66 (129)
57 KOG1909 Ran GTPase-activating 94.4 0.0082 1.8E-07 52.4 -0.8 228 4-253 57-310 (382)
58 PF13504 LRR_7: Leucine rich r 94.2 0.033 7.1E-07 26.1 1.4 16 240-256 1-16 (17)
59 KOG2982 Uncharacterized conser 94.1 0.079 1.7E-06 45.7 4.4 70 122-195 196-265 (418)
60 KOG1644 U2-associated snRNP A' 93.9 0.16 3.4E-06 41.4 5.6 87 151-249 62-149 (233)
61 KOG2739 Leucine-rich acidic nu 93.3 0.033 7.2E-07 46.8 0.9 35 152-188 64-100 (260)
62 KOG1644 U2-associated snRNP A' 92.7 0.15 3.3E-06 41.4 3.7 81 153-249 42-122 (233)
63 PF13306 LRR_5: Leucine rich r 92.5 1 2.2E-05 33.4 8.1 55 36-95 11-66 (129)
64 KOG2739 Leucine-rich acidic nu 92.2 0.082 1.8E-06 44.5 1.8 111 61-191 41-155 (260)
65 KOG1859 Leucine-rich repeat pr 90.4 0.034 7.3E-07 53.4 -2.4 78 152-249 186-263 (1096)
66 smart00367 LRR_CC Leucine-rich 90.3 0.18 3.9E-06 26.4 1.3 18 239-256 1-18 (26)
67 KOG2123 Uncharacterized conser 90.0 0.012 2.7E-07 50.0 -5.1 82 124-224 18-99 (388)
68 KOG1859 Leucine-rich repeat pr 87.6 0.035 7.5E-07 53.3 -4.4 109 120-251 182-290 (1096)
69 KOG4579 Leucine-rich repeat (L 85.2 0.097 2.1E-06 40.0 -2.3 106 125-249 27-132 (177)
70 KOG0531 Protein phosphatase 1, 84.1 0.63 1.4E-05 42.7 1.9 104 121-250 91-196 (414)
71 KOG0531 Protein phosphatase 1, 82.0 0.84 1.8E-05 41.9 1.9 33 62-96 139-171 (414)
72 KOG2123 Uncharacterized conser 81.9 0.11 2.3E-06 44.5 -3.6 82 152-251 18-99 (388)
73 smart00369 LRR_TYP Leucine-ric 77.3 1.6 3.5E-05 22.5 1.3 20 239-260 1-20 (26)
74 smart00370 LRR Leucine-rich re 77.3 1.6 3.5E-05 22.5 1.3 20 239-260 1-20 (26)
75 KOG4579 Leucine-rich repeat (L 72.6 0.4 8.6E-06 36.8 -2.5 65 119-190 47-111 (177)
76 COG5238 RNA1 Ran GTPase-activa 66.3 5.7 0.00012 34.2 2.8 38 60-97 89-130 (388)
77 COG5238 RNA1 Ran GTPase-activa 55.5 12 0.00025 32.4 2.8 207 32-256 87-318 (388)
78 PF13516 LRR_6: Leucine Rich r 54.8 7.9 0.00017 19.4 1.1 15 239-254 1-15 (24)
79 smart00364 LRR_BAC Leucine-ric 45.7 13 0.00028 19.5 1.0 18 240-259 2-19 (26)
80 smart00365 LRR_SD22 Leucine-ri 20.4 80 0.0017 16.4 1.4 15 179-194 2-16 (26)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=9.9e-18 Score=170.08 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=53.5
Q ss_pred CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC
Q 037794 3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG 82 (293)
Q Consensus 3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~ 82 (293)
.+++|++|++++|..++.+|. ...+++|+.|++++|..+..++.. ..++++|+.|++++|..++.+|..
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~---------ls~l~~Le~L~L~~c~~L~~lp~s--i~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD---------LSMATNLETLKLSDCSSLVELPSS--IQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc---------cccCCcccEEEecCCCCccccchh--hhccCCCCEEeCCCCCCcCccCCc
Confidence 455666666666655555553 112667777777777766666654 456677777777777777777655
Q ss_pred ccCCCCeeEEEecccc
Q 037794 83 IVSTPKLHEVQVSKKE 98 (293)
Q Consensus 83 ~~~~~~L~~L~l~~c~ 98 (293)
. .+++|+.|.+++|.
T Consensus 701 i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCS 715 (1153)
T ss_pred C-CCCCCCEEeCCCCC
Confidence 4 56777777777764
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=1.7e-16 Score=161.16 Aligned_cols=230 Identities=20% Similarity=0.301 Sum_probs=153.4
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ 81 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~ 81 (293)
+.+++|++|++++|..+..+|...+. +++|+.|++++|.+++.++... ++++|+.|.+++|..++.+|.
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~--------L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQY--------LNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhc--------cCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCcccccc
Confidence 56789999999999999999875544 8999999999999999888642 789999999999998888774
Q ss_pred CccCCCCeeEEEecccccccccc------------ccCcc---chhhhhhhhh-hhccCCCccEEEecCCCCceEeccCC
Q 037794 82 GIVSTPKLHEVQVSKKEEDELHH------------WEGNK---LNSTIQKRYE-EMIGFRDIERLQLSHFPRLKEIWHGQ 145 (293)
Q Consensus 82 ~~~~~~~L~~L~l~~c~~~~~~~------------~~~~~---~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~ 145 (293)
. .++|+.|.+.++. ..... ..+.. +......+.. ....+++|+.|.+++++.+..++.
T Consensus 723 ~---~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-- 796 (1153)
T PLN03210 723 I---STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS-- 796 (1153)
T ss_pred c---cCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh--
Confidence 3 4567788777652 11110 00000 0000000000 112346788888888876666552
Q ss_pred CCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccc-cccc--cc-----cc--CCCCCCcc
Q 037794 146 ALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLE-ELNA--DK-----EH--IGPLFPRL 215 (293)
Q Consensus 146 ~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~-~~~~--~~-----~~--~~~~f~~L 215 (293)
.+..+++|+.|++++|..++.+ |... .+++|+.|++.+|..+..++... .+.. .. .. ....+++|
T Consensus 797 --si~~L~~L~~L~Ls~C~~L~~L-P~~~--~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L 871 (1153)
T PLN03210 797 --SIQNLHKLEHLEIENCINLETL-PTGI--NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNL 871 (1153)
T ss_pred --hhhCCCCCCEEECCCCCCcCee-CCCC--CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCC
Confidence 2557788888888888888764 6542 57888888888887776654210 0000 00 00 01124788
Q ss_pred cEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794 216 FILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 216 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
+.|.+.+|++++.++ .....+++|+.+++++|++|+.+
T Consensus 872 ~~L~L~~C~~L~~l~---~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 872 SFLDMNGCNNLQRVS---LNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CEEECCCCCCcCccC---cccccccCCCeeecCCCcccccc
Confidence 888888888888775 34567788888888888888765
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.50 E-value=9.3e-14 Score=139.87 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=44.2
Q ss_pred CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC
Q 037794 3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG 82 (293)
Q Consensus 3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~ 82 (293)
.+++|++|+++++.....+|.. .+++|++|+++++.....++.. ...+++|+.|++++|.....+|..
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~----------~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p~~ 183 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRG----------SIPNLETLDLSNNMLSGEIPND--IGSFSSLKVLDLGGNVLVGKIPNS 183 (968)
T ss_pred cCCCCCEEECcCCccccccCcc----------ccCCCCEEECcCCcccccCChH--HhcCCCCCEEECccCcccccCChh
Confidence 5677888888877544444432 1556666666555332223322 334555555555555433344544
Q ss_pred ccCCCCeeEEEeccc
Q 037794 83 IVSTPKLHEVQVSKK 97 (293)
Q Consensus 83 ~~~~~~L~~L~l~~c 97 (293)
+..+++|+.|++++|
T Consensus 184 ~~~l~~L~~L~L~~n 198 (968)
T PLN00113 184 LTNLTSLEFLTLASN 198 (968)
T ss_pred hhhCcCCCeeeccCC
Confidence 555555555555544
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.50 E-value=6.6e-14 Score=140.92 Aligned_cols=86 Identities=19% Similarity=0.171 Sum_probs=53.9
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ 81 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~ 81 (293)
+.+++|++|++++|.....+|...+. +++|++|+++++.....++.. ...+++|+.|++++|.....+|.
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~--------l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p~ 206 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGS--------FSSLKVLDLGGNVLVGKIPNS--LTNLTSLEFLTLASNQLVGQIPR 206 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhc--------CCCCCEEECccCcccccCChh--hhhCcCCCeeeccCCCCcCcCCh
Confidence 45778888888887544455543332 777777777776543334432 34667777777776654445666
Q ss_pred CccCCCCeeEEEeccc
Q 037794 82 GIVSTPKLHEVQVSKK 97 (293)
Q Consensus 82 ~~~~~~~L~~L~l~~c 97 (293)
.+..+++|+.|.+.++
T Consensus 207 ~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 207 ELGQMKSLKWIYLGYN 222 (968)
T ss_pred HHcCcCCccEEECcCC
Confidence 6666677777776655
No 5
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.13 E-value=1.7e-12 Score=113.34 Aligned_cols=236 Identities=19% Similarity=0.203 Sum_probs=118.6
Q ss_pred CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccc--cccC
Q 037794 5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKT--FSQG 82 (293)
Q Consensus 5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~--lp~~ 82 (293)
|++++|.+.+|..+++.--..... .|++|+.+.+..|+++++.........|++|++++++.|+.+.+ +-..
T Consensus 164 pnIehL~l~gc~~iTd~s~~sla~------~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~ 237 (483)
T KOG4341|consen 164 PNIEHLALYGCKKITDSSLLSLAR------YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL 237 (483)
T ss_pred CchhhhhhhcceeccHHHHHHHHH------hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence 445555555554444332222111 25566666666666665555544455666666666666665553 2122
Q ss_pred ccCCCCeeEEEecccccccc--cc-ccCc-----cch------hhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCC
Q 037794 83 IVSTPKLHEVQVSKKEEDEL--HH-WEGN-----KLN------STIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALP 148 (293)
Q Consensus 83 ~~~~~~L~~L~l~~c~~~~~--~~-~~~~-----~~~------~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 148 (293)
...+..++.+...||.+... .. .++. .++ -....++.....+..|+.+..++|..+++....+ +
T Consensus 238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a-L- 315 (483)
T KOG4341|consen 238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA-L- 315 (483)
T ss_pred hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH-H-
Confidence 23344455555555532111 00 0000 000 0001122222345666677777766655433222 1
Q ss_pred cccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCce
Q 037794 149 VSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKR 228 (293)
Q Consensus 149 ~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~ 228 (293)
....++|+.|.+..|..+.+.--.....+.+.|+.+++.+|-.+..-. ...... .+|.|+.+.+++|..+++
T Consensus 316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t-L~sls~-------~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT-LASLSR-------NCPRLRVLSLSHCELITD 387 (483)
T ss_pred hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh-Hhhhcc-------CCchhccCChhhhhhhhh
Confidence 123378888888888877665333345567778888877776543321 011111 237788888887777765
Q ss_pred ecc--CCCccccCCCcceEeeecCCCcccc
Q 037794 229 FCN--FTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 229 ~~~--~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
-.. .......+..|+.+++++||.++.-
T Consensus 388 ~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 388 EGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred hhhhhhhhccccccccceeeecCCCCchHH
Confidence 311 0022244556777777777766543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.96 E-value=1.4e-11 Score=112.82 Aligned_cols=160 Identities=21% Similarity=0.219 Sum_probs=87.7
Q ss_pred cccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCc
Q 037794 59 TLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRL 138 (293)
Q Consensus 59 ~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l 138 (293)
...+.||..++++ |+.++.+|..+..+++|++|.+++. .+.++........+|++|+++. +.+
T Consensus 218 ld~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N---------------~iteL~~~~~~W~~lEtLNlSr-NQL 280 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGN---------------KITELNMTEGEWENLETLNLSR-NQL 280 (1255)
T ss_pred hhhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcC---------------ceeeeeccHHHHhhhhhhcccc-chh
Confidence 3355566666665 3556666666666666666666643 2222222223344555555554 223
Q ss_pred eEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEE
Q 037794 139 KEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFIL 218 (293)
Q Consensus 139 ~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L 218 (293)
+.+|.. .-.++.|++|++.+...--+-+|. +++++.+|+.++..+ ++++-+| +++.. + ++|+.|
T Consensus 281 t~LP~a----vcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aan-N~LElVP--EglcR-------C-~kL~kL 344 (1255)
T KOG0444|consen 281 TVLPDA----VCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAAN-NKLELVP--EGLCR-------C-VKLQKL 344 (1255)
T ss_pred ccchHH----HhhhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhc-cccccCc--hhhhh-------h-HHHHHh
Confidence 333311 223455666666554433333343 355566666666665 5555555 33332 3 777777
Q ss_pred ecCCCCCCceeccCCCccccCCCcceEeeecCCCccc
Q 037794 219 RLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMET 255 (293)
Q Consensus 219 ~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~ 255 (293)
.+.+ ..+..++ ..+..++.|+.|+++..|+|--
T Consensus 345 ~L~~-NrLiTLP---eaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 345 KLDH-NRLITLP---EAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred cccc-cceeech---hhhhhcCCcceeeccCCcCccC
Confidence 7754 5565555 6777788888888888887743
No 7
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.83 E-value=2.6e-09 Score=105.01 Aligned_cols=239 Identities=17% Similarity=0.223 Sum_probs=147.5
Q ss_pred CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC
Q 037794 3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG 82 (293)
Q Consensus 3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~ 82 (293)
.++.|+.|++++|..+.++|..++. +-+|+.|++++. .+.++|.. ...+..|.+|++.....+..+|..
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~--------Li~LryL~L~~t-~I~~LP~~--l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGE--------LVHLRYLDLSDT-GISHLPSG--LGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhh--------hhhhhcccccCC-CccccchH--HHHHHhhheeccccccccccccch
Confidence 4778888899888888888886665 777888887664 45566665 556667777777766666555444
Q ss_pred ccCCCCeeEEEeccccc-ccccc-----------------ccC---ccc------hhhh----------hhhhhhhccCC
Q 037794 83 IVSTPKLHEVQVSKKEE-DELHH-----------------WEG---NKL------NSTI----------QKRYEEMIGFR 125 (293)
Q Consensus 83 ~~~~~~L~~L~l~~c~~-~~~~~-----------------~~~---~~~------~~~~----------~~l~~~~~~~~ 125 (293)
...+++|+.|.+..... ..... ... ..+ .... ..+......+.
T Consensus 638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~ 717 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLG 717 (889)
T ss_pred hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccccc
Confidence 45577777776654420 00000 000 000 0000 11112345678
Q ss_pred CccEEEecCCCCceEe--ccCCCCCcc-cCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccc
Q 037794 126 DIERLQLSHFPRLKEI--WHGQALPVS-FFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELN 202 (293)
Q Consensus 126 ~L~~L~l~~~~~l~~~--~~~~~~~~~-~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 202 (293)
+|++|.|.+|...... |... .... +|+++..+.+.+|...++..+ ..-.++|+.|.+..|..++++.......
T Consensus 718 ~L~~L~i~~~~~~e~~~~~~~~-~~~~~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~~~k~~ 793 (889)
T KOG4658|consen 718 NLEELSILDCGISEIVIEWEES-LIVLLCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIPKLKAL 793 (889)
T ss_pred CcceEEEEcCCCchhhcccccc-cchhhhHHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCCCHHHHh
Confidence 8888888888754321 2221 1111 267888888888887776422 2346899999999999998887432221
Q ss_pred cccccCCCCCCcccEE-ecCCCCCCceeccCCCccccCCCcceEeeecCCCcccccccc
Q 037794 203 ADKEHIGPLFPRLFIL-RLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNS 260 (293)
Q Consensus 203 ~~~~~~~~~f~~L~~L-~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~ 260 (293)
.........|.++..+ .+.+..++..+...| ..++.|+.+.+..||+++++ |..
T Consensus 794 ~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~---l~~~~l~~~~ve~~p~l~~~-P~~ 848 (889)
T KOG4658|consen 794 LELKELILPFNKLEGLRMLCSLGGLPQLYWLP---LSFLKLEELIVEECPKLGKL-PLL 848 (889)
T ss_pred hhcccEEecccccccceeeecCCCCceeEecc---cCccchhheehhcCcccccC-ccc
Confidence 1111112245777777 588888888776544 45566999999999999998 743
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.83 E-value=1.5e-10 Score=106.08 Aligned_cols=185 Identities=16% Similarity=0.195 Sum_probs=106.0
Q ss_pred cccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccc------c-----ccCccchhhhhhhhhhhccCCCc
Q 037794 59 TLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELH------H-----WEGNKLNSTIQKRYEEMIGFRDI 127 (293)
Q Consensus 59 ~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~------~-----~~~~~~~~~~~~l~~~~~~~~~L 127 (293)
++++..|..|+++. ++++..|..+....++.-|.++... .... . +-.. .+..+..+++.+..+.+|
T Consensus 99 iF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDL-S~NrLe~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDL-SNNRLEMLPPQIRRLSML 175 (1255)
T ss_pred hcccccceeeecch-hhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcc-ccchhhhcCHHHHHHhhh
Confidence 44556666666665 4677777777777777777776531 1110 0 0000 124556677777777888
Q ss_pred cEEEecCCCCceEeccCC--------------C------CC--cccCCCccEEEeccCCCCCccCChhHHhccCCCCeEE
Q 037794 128 ERLQLSHFPRLKEIWHGQ--------------A------LP--VSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLE 185 (293)
Q Consensus 128 ~~L~l~~~~~l~~~~~~~--------------~------~~--~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~ 185 (293)
++|.+++.| +...-..+ . +| +..+.||..++++.. .+..+ |+. +-.+++|+.|+
T Consensus 176 qtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~v-Pec-ly~l~~LrrLN 251 (1255)
T KOG0444|consen 176 QTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIV-PEC-LYKLRNLRRLN 251 (1255)
T ss_pred hhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcc-hHH-Hhhhhhhheec
Confidence 888887754 22111111 0 11 334556666666433 34332 443 45566777777
Q ss_pred ecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc-ccccchhh
Q 037794 186 VRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF-ISNSVLHV 264 (293)
Q Consensus 186 i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l-~p~~l~~l 264 (293)
+++ +.++++.- +.. .+.+|++|.++. ..++.++ ..+..++.|++|.+.+. +|..= +|+++|++
T Consensus 252 LS~-N~iteL~~--~~~--------~W~~lEtLNlSr-NQLt~LP---~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 252 LSG-NKITELNM--TEG--------EWENLETLNLSR-NQLTVLP---DAVCKLTKLTKLYANNN-KLTFEGIPSGIGKL 315 (1255)
T ss_pred cCc-Cceeeeec--cHH--------HHhhhhhhcccc-chhccch---HHHhhhHHHHHHHhccC-cccccCCccchhhh
Confidence 666 44544421 111 226777777776 4666655 66778888888877764 56442 59999998
Q ss_pred cc
Q 037794 265 TT 266 (293)
Q Consensus 265 ~~ 266 (293)
..
T Consensus 316 ~~ 317 (1255)
T KOG0444|consen 316 IQ 317 (1255)
T ss_pred hh
Confidence 75
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.83 E-value=8.7e-10 Score=100.41 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=19.5
Q ss_pred CcccEEecCCCCCCceeccCCCccccCCCcceEeeecC
Q 037794 213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC 250 (293)
Q Consensus 213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C 250 (293)
++|+.|.+.+ .+++.|+. ..+..+++|++|++.+.
T Consensus 392 ~~LrkL~l~g-Nqlk~I~k--rAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 392 PSLRKLRLTG-NQLKSIPK--RAFSGLEALEHLDLGDN 426 (873)
T ss_pred hhhhheeecC-ceeeecch--hhhccCcccceecCCCC
Confidence 5666666655 45555554 34455555666655554
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.80 E-value=1.3e-10 Score=90.42 Aligned_cols=168 Identities=17% Similarity=0.229 Sum_probs=117.3
Q ss_pred ccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCce
Q 037794 60 LEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLK 139 (293)
Q Consensus 60 ~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 139 (293)
+.+.+..+|.++. .+++.+|..++.+.+|+.|.+. |..+++++..+.+++.|+.|++. ++++.
T Consensus 30 f~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~---------------nnqie~lp~~issl~klr~lnvg-mnrl~ 92 (264)
T KOG0617|consen 30 FNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLS---------------NNQIEELPTSISSLPKLRILNVG-MNRLN 92 (264)
T ss_pred cchhhhhhhhccc-CceeecCCcHHHhhhhhhhhcc---------------cchhhhcChhhhhchhhhheecc-hhhhh
Confidence 3556667777776 5777888888888888888775 35677788778888888888874 45565
Q ss_pred EeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEe
Q 037794 140 EIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILR 219 (293)
Q Consensus 140 ~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~ 219 (293)
..+ ..+++|+-|+.|++.+...-....|-. +-.++.|+.|.+.+ +.++-++.. .+ .+ .+|+.|.
T Consensus 93 ~lp----rgfgs~p~levldltynnl~e~~lpgn-ff~m~tlralyl~d-ndfe~lp~d--vg-------~l-t~lqil~ 156 (264)
T KOG0617|consen 93 ILP----RGFGSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGD-NDFEILPPD--VG-------KL-TNLQILS 156 (264)
T ss_pred cCc----cccCCCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcC-CCcccCChh--hh-------hh-cceeEEe
Confidence 555 226788888888888877666655655 44477777787777 445555421 11 13 6777777
Q ss_pred cCCCCCCceeccCCCccccCCCcceEeeecCCCccccccccchhhcc
Q 037794 220 LIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVTT 266 (293)
Q Consensus 220 l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~~ 266 (293)
+.+- .+-+++ ..++.++.|++|+|.+. .|+.+ |+.++.+..
T Consensus 157 lrdn-dll~lp---keig~lt~lrelhiqgn-rl~vl-ppel~~l~l 197 (264)
T KOG0617|consen 157 LRDN-DLLSLP---KEIGDLTRLRELHIQGN-RLTVL-PPELANLDL 197 (264)
T ss_pred eccC-chhhCc---HHHHHHHHHHHHhcccc-eeeec-Chhhhhhhh
Confidence 7763 344444 56678888999999985 78888 888888776
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.79 E-value=3.6e-09 Score=96.50 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=22.2
Q ss_pred CcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794 213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
.+|+.|++++ ..+..|.. ++-...++|+.|++++. +++.+
T Consensus 293 t~L~~L~lS~-NaI~rih~--d~WsftqkL~~LdLs~N-~i~~l 332 (873)
T KOG4194|consen 293 TSLEQLDLSY-NAIQRIHI--DSWSFTQKLKELDLSSN-RITRL 332 (873)
T ss_pred chhhhhccch-hhhheeec--chhhhcccceeEecccc-ccccC
Confidence 5566666655 34555433 33334566666666664 56666
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.79 E-value=1.5e-08 Score=98.13 Aligned_cols=16 Identities=13% Similarity=0.387 Sum_probs=8.1
Q ss_pred CCcceEeeecCCCcccc
Q 037794 240 PMLWSLTIENCPDMETF 256 (293)
Q Consensus 240 ~~L~~L~i~~C~~L~~l 256 (293)
++|++|+|++| +|+.+
T Consensus 367 ~~L~~LdLs~N-~Lt~L 382 (754)
T PRK15370 367 PTITTLDVSRN-ALTNL 382 (754)
T ss_pred CCcCEEECCCC-cCCCC
Confidence 44555555554 34444
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.78 E-value=4e-08 Score=95.09 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=31.7
Q ss_pred CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794 5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS 80 (293)
Q Consensus 5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp 80 (293)
++|+.|.+.++ +++.+|.. .++|++|+++++ .++.++. ..++|+.|++.++ .+..+|
T Consensus 222 ~~L~~L~L~~N-~Lt~LP~l-----------p~~Lk~LdLs~N-~LtsLP~-----lp~sL~~L~Ls~N-~L~~Lp 278 (788)
T PRK15387 222 AHITTLVIPDN-NLTSLPAL-----------PPELRTLEVSGN-QLTSLPV-----LPPGLLELSIFSN-PLTHLP 278 (788)
T ss_pred cCCCEEEccCC-cCCCCCCC-----------CCCCcEEEecCC-ccCcccC-----cccccceeeccCC-chhhhh
Confidence 35677777664 56666541 566777777665 4454542 1345566665554 244443
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.77 E-value=8.4e-09 Score=99.92 Aligned_cols=197 Identities=16% Similarity=0.210 Sum_probs=99.3
Q ss_pred CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCcc
Q 037794 5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIV 84 (293)
Q Consensus 5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~ 84 (293)
++|+.|+++++ +++.+|... +++|+.|+++++ .+++++.. -.++|+.|++++| .+..+|..+
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~l----------~~nL~~L~Ls~N-~LtsLP~~----l~~~L~~L~Ls~N-~L~~LP~~l- 260 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPENL----------QGNIKTLYANSN-QLTSIPAT----LPDTIQEMELSIN-RITELPERL- 260 (754)
T ss_pred cCCcEEEecCC-CCCcCChhh----------ccCCCEEECCCC-ccccCChh----hhccccEEECcCC-ccCcCChhH-
Confidence 46778888775 666666532 456777777665 34555432 1235666666654 244444332
Q ss_pred CCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCC---------------CCCc
Q 037794 85 STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQ---------------ALPV 149 (293)
Q Consensus 85 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~---------------~~~~ 149 (293)
..+|+.|.++++ .+..++..+ .++|+.|+++++ .++.++... .+|.
T Consensus 261 -~s~L~~L~Ls~N---------------~L~~LP~~l--~~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 261 -PSALQSLDLFHN---------------KISCLPENL--PEELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPE 321 (754)
T ss_pred -hCCCCEEECcCC---------------ccCcccccc--CCCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCc
Confidence 134555555532 011111111 123444444332 122221100 0111
Q ss_pred ccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCcee
Q 037794 150 SFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRF 229 (293)
Q Consensus 150 ~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~ 229 (293)
..+++|+.|++.+|. +.. +|.. + .++|+.|++.++ .++.++. ...++|++|++.++ .++.+
T Consensus 322 ~l~~sL~~L~Ls~N~-Lt~-LP~~-l--~~sL~~L~Ls~N-~L~~LP~------------~lp~~L~~LdLs~N-~Lt~L 382 (754)
T PRK15370 322 TLPPGLKTLEAGENA-LTS-LPAS-L--PPELQVLDVSKN-QITVLPE------------TLPPTITTLDVSRN-ALTNL 382 (754)
T ss_pred cccccceeccccCCc-ccc-CChh-h--cCcccEEECCCC-CCCcCCh------------hhcCCcCEEECCCC-cCCCC
Confidence 123567777777664 333 2543 2 257777777774 3444431 12367888888875 46555
Q ss_pred ccCCCccccCCCcceEeeecCCCccccccccchhh
Q 037794 230 CNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHV 264 (293)
Q Consensus 230 ~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l 264 (293)
+. .+. ++|+.|+++++ +|+.+ |.++..+
T Consensus 383 P~---~l~--~sL~~LdLs~N-~L~~L-P~sl~~~ 410 (754)
T PRK15370 383 PE---NLP--AALQIMQASRN-NLVRL-PESLPHF 410 (754)
T ss_pred CH---hHH--HHHHHHhhccC-CcccC-chhHHHH
Confidence 42 222 36777888876 67777 6655443
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=5.6e-09 Score=92.09 Aligned_cols=212 Identities=13% Similarity=0.169 Sum_probs=129.4
Q ss_pred CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccc-cccccccCCCcceEeEcCCCCccc-cc
Q 037794 3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFC-LENYTLEFPSLERVFVTRCPNMKT-FS 80 (293)
Q Consensus 3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~i~~c~~l~~-lp 80 (293)
++.+|+++.+++| .+..++... ....||+++.|+++..- +.+|. ....+..+|+|+.|+++.. .+.- +.
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~------~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~ 189 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEE------YSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSN-RLSNFIS 189 (505)
T ss_pred hHHhhhheeecCc-cccccchhh------hhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccc-cccCCcc
Confidence 4567888888776 444444321 23359999999998842 22332 2333568999999999874 3331 11
Q ss_pred -cCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEE
Q 037794 81 -QGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLV 159 (293)
Q Consensus 81 -~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 159 (293)
.....+++|+.|.+++|+ + ....+-.....||+|+.|.+.+...+.... .+...+..|++|+
T Consensus 190 s~~~~~l~~lK~L~l~~CG-----------l--s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~----~~~~i~~~L~~Ld 252 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCG-----------L--SWKDVQWILLTFPSLEVLYLEANEIILIKA----TSTKILQTLQELD 252 (505)
T ss_pred ccchhhhhhhheEEeccCC-----------C--CHHHHHHHHHhCCcHHHhhhhcccccceec----chhhhhhHHhhcc
Confidence 112357899999999991 1 122233334679999999998864333222 3344568899999
Q ss_pred eccCCCCCccCC-hhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCcccc
Q 037794 160 VDDCANMSSAIP-ANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIE 238 (293)
Q Consensus 160 i~~c~~l~~~~p-~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~ 238 (293)
+++...... + -.....+|.|..|++.. ..+.++...+ .........||+|++|.+.. .+++++... ..+..
T Consensus 253 Ls~N~li~~--~~~~~~~~l~~L~~Lnls~-tgi~si~~~d---~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl-~~l~~ 324 (505)
T KOG3207|consen 253 LSNNNLIDF--DQGYKVGTLPGLNQLNLSS-TGIASIAEPD---VESLDKTHTFPKLEYLNISE-NNIRDWRSL-NHLRT 324 (505)
T ss_pred ccCCccccc--ccccccccccchhhhhccc-cCcchhcCCC---ccchhhhcccccceeeeccc-Ccccccccc-chhhc
Confidence 998876652 2 13456688888888887 3444443211 11122224679999999987 455443221 35556
Q ss_pred CCCcceEeee
Q 037794 239 MPMLWSLTIE 248 (293)
Q Consensus 239 l~~L~~L~i~ 248 (293)
+++|+.|.+.
T Consensus 325 l~nlk~l~~~ 334 (505)
T KOG3207|consen 325 LENLKHLRIT 334 (505)
T ss_pred cchhhhhhcc
Confidence 6777776654
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.68 E-value=1.4e-07 Score=91.37 Aligned_cols=200 Identities=21% Similarity=0.155 Sum_probs=109.4
Q ss_pred cceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCC
Q 037794 7 LVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVST 86 (293)
Q Consensus 7 L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~ 86 (293)
-..|+++++ .++.+|... .++|+.|.+.++ +++.++. ..++|+.|+++++ +++.+|.. .
T Consensus 203 ~~~LdLs~~-~LtsLP~~l----------~~~L~~L~L~~N-~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~l---p 261 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDCL----------PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPVL---P 261 (788)
T ss_pred CcEEEcCCC-CCCcCCcch----------hcCCCEEEccCC-cCCCCCC-----CCCCCcEEEecCC-ccCcccCc---c
Confidence 456788876 777787643 357899998874 5666664 3689999999885 78877743 4
Q ss_pred CCeeEEEeccccccccc----------cccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCcc
Q 037794 87 PKLHEVQVSKKEEDELH----------HWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLF 156 (293)
Q Consensus 87 ~~L~~L~l~~c~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 156 (293)
++|+.|.+.++. .... .+.+. .+..++. ..++|+.|+++++ .++.++. .| .+|+
T Consensus 262 ~sL~~L~Ls~N~-L~~Lp~lp~~L~~L~Ls~N----~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~---lp----~~L~ 325 (788)
T PRK15387 262 PGLLELSIFSNP-LTHLPALPSGLCKLWIFGN----QLTSLPV---LPPGLQELSVSDN-QLASLPA---LP----SELC 325 (788)
T ss_pred cccceeeccCCc-hhhhhhchhhcCEEECcCC----ccccccc---cccccceeECCCC-ccccCCC---Cc----cccc
Confidence 678888887651 1100 00000 1111111 2356677777663 3443321 11 3455
Q ss_pred EEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccc-ccc-------cccccCCCCCCcccEEecCCCCCCce
Q 037794 157 KLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLE-ELN-------ADKEHIGPLFPRLFILRLIDLPKLKR 228 (293)
Q Consensus 157 ~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~-~~~-------~~~~~~~~~f~~L~~L~l~~~~~l~~ 228 (293)
.|++++|.. .. +|. + ..+|+.|++.+ +.++.++... ... .....+. ..++|+.|++.+. .++.
T Consensus 326 ~L~Ls~N~L-~~-LP~--l--p~~Lq~LdLS~-N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~-l~~~L~~LdLs~N-~Lt~ 396 (788)
T PRK15387 326 KLWAYNNQL-TS-LPT--L--PSGLQELSVSD-NQLASLPTLPSELYKLWAYNNRLTSLPA-LPSGLKELIVSGN-RLTS 396 (788)
T ss_pred ccccccCcc-cc-ccc--c--ccccceEecCC-CccCCCCCCCcccceehhhccccccCcc-cccccceEEecCC-cccC
Confidence 556555432 22 232 1 13677777776 4455544210 000 0000111 2246777777763 5655
Q ss_pred eccCCCccccCCCcceEeeecCCCcccccccc
Q 037794 229 FCNFTGNIIEMPMLWSLTIENCPDMETFISNS 260 (293)
Q Consensus 229 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~ 260 (293)
++.. .++|+.|+++++ +|+.+ |..
T Consensus 397 LP~l------~s~L~~LdLS~N-~LssI-P~l 420 (788)
T PRK15387 397 LPVL------PSELKELMVSGN-RLTSL-PML 420 (788)
T ss_pred CCCc------ccCCCEEEccCC-cCCCC-Ccc
Confidence 5432 267888888887 57777 543
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.66 E-value=4.2e-11 Score=104.37 Aligned_cols=223 Identities=19% Similarity=0.198 Sum_probs=106.0
Q ss_pred CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC
Q 037794 3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG 82 (293)
Q Consensus 3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~ 82 (293)
++..|.+|++.+. ++.+.|+..+. +.+++.+..+.. ++..+|.. ....++|.+++++.. .+..+|..
T Consensus 66 nL~~l~vl~~~~n-~l~~lp~aig~--------l~~l~~l~vs~n-~ls~lp~~--i~s~~~l~~l~~s~n-~~~el~~~ 132 (565)
T KOG0472|consen 66 NLACLTVLNVHDN-KLSQLPAAIGE--------LEALKSLNVSHN-KLSELPEQ--IGSLISLVKLDCSSN-ELKELPDS 132 (565)
T ss_pred cccceeEEEeccc-hhhhCCHHHHH--------HHHHHHhhcccc-hHhhccHH--Hhhhhhhhhhhcccc-ceeecCch
Confidence 5677888888774 67777776554 555666655543 23344443 334555555555442 33344444
Q ss_pred ccCCCCeeEEEeccccccccccccCc----------cchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccC
Q 037794 83 IVSTPKLHEVQVSKKEEDELHHWEGN----------KLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFF 152 (293)
Q Consensus 83 ~~~~~~L~~L~l~~c~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 152 (293)
++.+..|+.+..... +..+.. .+. -....+.++++....++.|+.++... +-++.+|. .++.+
T Consensus 133 i~~~~~l~dl~~~~N-~i~slp-~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~----~lg~l 205 (565)
T KOG0472|consen 133 IGRLLDLEDLDATNN-QISSLP-EDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPP----ELGGL 205 (565)
T ss_pred HHHHhhhhhhhcccc-ccccCc-hHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCCh----hhcch
Confidence 444444444443321 000000 000 00012334444444455555555543 22333331 14455
Q ss_pred CCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794 153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF 232 (293)
Q Consensus 153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~ 232 (293)
.+|+-||+++..... .|+ |.++..|++|++.. +.++-++. +.. ..++++..|++++ .++++++
T Consensus 206 ~~L~~LyL~~Nki~~--lPe--f~gcs~L~Elh~g~-N~i~~lpa--e~~-------~~L~~l~vLDLRd-Nklke~P-- 268 (565)
T KOG0472|consen 206 ESLELLYLRRNKIRF--LPE--FPGCSLLKELHVGE-NQIEMLPA--EHL-------KHLNSLLVLDLRD-NKLKEVP-- 268 (565)
T ss_pred hhhHHHHhhhccccc--CCC--CCccHHHHHHHhcc-cHHHhhHH--HHh-------cccccceeeeccc-cccccCc--
Confidence 555555555543222 132 45555555555554 33333321 110 1125666666665 4555554
Q ss_pred CCccccCCCcceEeeecCCCccccccccchhhc
Q 037794 233 TGNIIEMPMLWSLTIENCPDMETFISNSVLHVT 265 (293)
Q Consensus 233 ~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~ 265 (293)
..+..+.+|++|++++. .++++ |.+++.++
T Consensus 269 -de~clLrsL~rLDlSNN-~is~L-p~sLgnlh 298 (565)
T KOG0472|consen 269 -DEICLLRSLERLDLSNN-DISSL-PYSLGNLH 298 (565)
T ss_pred -hHHHHhhhhhhhcccCC-ccccC-Ccccccce
Confidence 45555666666666664 46565 65555554
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.65 E-value=4.3e-10 Score=98.49 Aligned_cols=233 Identities=16% Similarity=0.141 Sum_probs=150.7
Q ss_pred CcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc--ccCc
Q 037794 6 SLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF--SQGI 83 (293)
Q Consensus 6 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l--p~~~ 83 (293)
.|++|.+++|.....-+.... ...+|++++|.+.+|..+++-........+++|+.|.+..|+.++.. -...
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~------~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTF------ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred ccccccccccccCCcchhhHH------hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 478888988866655443322 22399999999999998887666555668999999999999999843 2234
Q ss_pred cCCCCeeEEEecccccccc----ccccCccc----------hhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCc
Q 037794 84 VSTPKLHEVQVSKKEEDEL----HHWEGNKL----------NSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPV 149 (293)
Q Consensus 84 ~~~~~L~~L~l~~c~~~~~----~~~~~~~~----------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 149 (293)
..|++|+++.+++|+.... ....|... ......+......++.+..+++..|..+++..... + -
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~-i-~ 290 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL-I-A 290 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH-H-h
Confidence 6799999999999975443 11222200 01111111222345556667777777666543211 1 1
Q ss_pred ccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCcee
Q 037794 150 SFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRF 229 (293)
Q Consensus 150 ~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~ 229 (293)
.....|+.|..++|....+......-++.++|+.+.+.+|..+++..- .-+.. ..+.|+.+.+.+|-...+-
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f-t~l~r-------n~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF-TMLGR-------NCPHLERLDLEECGLITDG 362 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh-hhhhc-------CChhhhhhcccccceehhh
Confidence 234778888899998887753445556788999999999987665421 11111 2378888888888766553
Q ss_pred ccCCCccccCCCcceEeeecCCCccc
Q 037794 230 CNFTGNIIEMPMLWSLTIENCPDMET 255 (293)
Q Consensus 230 ~~~~~~~~~l~~L~~L~i~~C~~L~~ 255 (293)
....-..+++.|+.+.++.|...+.
T Consensus 363 -tL~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 363 -TLASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred -hHhhhccCCchhccCChhhhhhhhh
Confidence 1112335678888888888865543
No 19
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.56 E-value=3.2e-07 Score=82.19 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=37.8
Q ss_pred cccccceeeccccccccccccccccccCC-CcceEeEcCCCCccccccCccCCCCeeEEEeccc
Q 037794 35 AFNELKFLELDDLPRLTSFCLENYTLEFP-SLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKK 97 (293)
Q Consensus 35 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c 97 (293)
.+++++.|++++| .++.+|. +| +|++|.+.+|..++.+|..+ .++|+.|.+.+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 4677888888877 5666662 43 68888888888877776432 357788888776
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.53 E-value=5.6e-08 Score=95.75 Aligned_cols=41 Identities=24% Similarity=0.443 Sum_probs=26.0
Q ss_pred CCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794 212 FPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 212 f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
|+++..+.+.+|..++.. ......|+|+.|.+..|+.++.+
T Consensus 746 f~~l~~~~~~~~~~~r~l----~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 746 FPNLSKVSILNCHMLRDL----TWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred HHHHHHHHhhcccccccc----chhhccCcccEEEEecccccccC
Confidence 455666666666555554 22345577888888888777776
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.42 E-value=3.9e-08 Score=94.02 Aligned_cols=45 Identities=27% Similarity=0.262 Sum_probs=32.7
Q ss_pred cccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccc
Q 037794 149 VSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVL 196 (293)
Q Consensus 149 ~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~ 196 (293)
+.++++|+.|.+++...-. ||.+.+.++..|++|.+++ ++++.++
T Consensus 379 l~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL~LSG-NkL~~Lp 423 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNS--FPASKLRKLEELEELNLSG-NKLTTLP 423 (1081)
T ss_pred hccccceeeeeeccccccc--CCHHHHhchHHhHHHhccc-chhhhhh
Confidence 5567888888887765333 5777788888888888888 6666665
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.38 E-value=4.4e-08 Score=86.17 Aligned_cols=228 Identities=16% Similarity=0.054 Sum_probs=102.0
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeecccccccc--c-cc-cccccccCCCcceEeEcCCCCcccc
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLT--S-FC-LENYTLEFPSLERVFVTRCPNMKTF 79 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~-~~-~~~~~~~~~~L~~L~i~~c~~l~~l 79 (293)
+.+|++|++++|. ++...... ........++|+.+.++++..-. . +. .......+++|++|++++|+.-...
T Consensus 22 l~~L~~l~l~~~~-l~~~~~~~---i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 22 LLCLQVLRLEGNT-LGEEAAKA---LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HhhccEEeecCCC-CcHHHHHH---HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 3457777777763 22110000 00112235667777776653210 0 00 0011234667888888777553322
Q ss_pred ccCccCC---CCeeEEEeccccccccccccCccchhhhhhhhhhhccC-CCccEEEecCCCCceEeccCCC-CCcccCCC
Q 037794 80 SQGIVST---PKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGF-RDIERLQLSHFPRLKEIWHGQA-LPVSFFNN 154 (293)
Q Consensus 80 p~~~~~~---~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~-~~~~~l~~ 154 (293)
+..+..+ ++|+.|.+++|.-.. .....+...+..+ ++|+.|++++|. +........ ..+...++
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~----------~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~ 166 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGD----------RGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRD 166 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccch----------HHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCC
Confidence 2222222 448888877661000 0111222333445 777777777764 221100000 01223456
Q ss_pred ccEEEeccCCCCCccCC--hhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794 155 LFKLVVDDCANMSSAIP--ANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF 232 (293)
Q Consensus 155 L~~L~i~~c~~l~~~~p--~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~ 232 (293)
|++|++++|..-...++ ...+...++|+.|++.+|. ++.... ..+. ... ..+++|++|+++++. +++....
T Consensus 167 L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~-~~l~---~~~-~~~~~L~~L~ls~n~-l~~~~~~ 239 (319)
T cd00116 167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGA-SALA---ETL-ASLKSLEVLNLGDNN-LTDAGAA 239 (319)
T ss_pred cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHH-HHHH---HHh-cccCCCCEEecCCCc-CchHHHH
Confidence 77777777653322111 1123344577777777753 222110 0000 000 123677777777753 4321100
Q ss_pred C--Ccc-ccCCCcceEeeecCCCcc
Q 037794 233 T--GNI-IEMPMLWSLTIENCPDME 254 (293)
Q Consensus 233 ~--~~~-~~l~~L~~L~i~~C~~L~ 254 (293)
. ..+ ...+.|++|++++| +++
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n-~i~ 263 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCN-DIT 263 (319)
T ss_pred HHHHHHhccCCCceEEEccCC-CCC
Confidence 0 000 12367777777777 453
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.37 E-value=1.5e-07 Score=82.80 Aligned_cols=231 Identities=17% Similarity=0.126 Sum_probs=129.5
Q ss_pred CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccC---CCcceEeEcCCCCcc--
Q 037794 3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEF---PSLERVFVTRCPNMK-- 77 (293)
Q Consensus 3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~---~~L~~L~i~~c~~l~-- 77 (293)
..++|++++++++.. ...+.... ........+++|+.|+++++......+.. ...+ ++|++|++++|..-.
T Consensus 49 ~~~~l~~l~l~~~~~-~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~~~~L~~L~ls~~~~~~~~ 124 (319)
T cd00116 49 PQPSLKELCLSLNET-GRIPRGLQ-SLLQGLTKGCGLQELDLSDNALGPDGCGV--LESLLRSSSLQELKLNNNGLGDRG 124 (319)
T ss_pred hCCCceEEecccccc-CCcchHHH-HHHHHHHhcCceeEEEccCCCCChhHHHH--HHHHhccCcccEEEeeCCccchHH
Confidence 456789999987633 21111100 00012223779999999988654322221 1122 569999999985331
Q ss_pred --ccccCccCC-CCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCC--cccC
Q 037794 78 --TFSQGIVST-PKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALP--VSFF 152 (293)
Q Consensus 78 --~lp~~~~~~-~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~l 152 (293)
.+...+..+ ++|+.|++++|. .. + .....+...+..+++|+.|+++++. ++...... ++ ...+
T Consensus 125 ~~~l~~~l~~~~~~L~~L~L~~n~-l~-----~----~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~-l~~~l~~~ 192 (319)
T cd00116 125 LRLLAKGLKDLPPALEKLVLGRNR-LE-----G----ASCEALAKALRANRDLKELNLANNG-IGDAGIRA-LAEGLKAN 192 (319)
T ss_pred HHHHHHHHHhCCCCceEEEcCCCc-CC-----c----hHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHH-HHHHHHhC
Confidence 222334455 899999999871 00 0 1122344445667899999999864 33211100 10 2234
Q ss_pred CCccEEEeccCCCCCccC--ChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceec
Q 037794 153 NNLFKLVVDDCANMSSAI--PANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFC 230 (293)
Q Consensus 153 ~~L~~L~i~~c~~l~~~~--p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~ 230 (293)
++|++|++++|..-.... ....+..+++|+.|++++|. +++... ..+.. .... ..++|++|++.+| .+++..
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~-~~l~~--~~~~-~~~~L~~L~l~~n-~i~~~~ 266 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGA-AALAS--ALLS-PNISLLTLSLSCN-DITDDG 266 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHH-HHHHH--HHhc-cCCCceEEEccCC-CCCcHH
Confidence 699999999986432110 11235567889999999964 433110 11000 0000 1278999999997 453211
Q ss_pred c--CCCccccCCCcceEeeecCCCcccc
Q 037794 231 N--FTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 231 ~--~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
. ....+..+++|++++++++ ++..-
T Consensus 267 ~~~l~~~~~~~~~L~~l~l~~N-~l~~~ 293 (319)
T cd00116 267 AKDLAEVLAEKESLLELDLRGN-KFGEE 293 (319)
T ss_pred HHHHHHHHhcCCCccEEECCCC-CCcHH
Confidence 1 1134456689999999997 46543
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.34 E-value=1.6e-08 Score=78.96 Aligned_cols=157 Identities=23% Similarity=0.286 Sum_probs=92.6
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ 115 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~ 115 (293)
+..+..|.+++.. +...+.. +..+.+|+.|++++ .+++.+|..++.+++|+.|.++- ..+.
T Consensus 32 ~s~ITrLtLSHNK-l~~vppn--ia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm---------------nrl~ 92 (264)
T KOG0617|consen 32 MSNITRLTLSHNK-LTVVPPN--IAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM---------------NRLN 92 (264)
T ss_pred hhhhhhhhcccCc-eeecCCc--HHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch---------------hhhh
Confidence 4455666666543 3334433 45677777777776 46777777777788888887762 2334
Q ss_pred hhhhhhccCCCccEEEecCCCCceE-eccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccc
Q 037794 116 KRYEEMIGFRDIERLQLSHFPRLKE-IWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEE 194 (293)
Q Consensus 116 ~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~ 194 (293)
.++..++++|.|+.|+++..+ +.. .-.|+ +..+..|+-|++.+...- . +|.. .+++++|+.|.+++. .+-+
T Consensus 93 ~lprgfgs~p~levldltynn-l~e~~lpgn---ff~m~tlralyl~dndfe-~-lp~d-vg~lt~lqil~lrdn-dll~ 164 (264)
T KOG0617|consen 93 ILPRGFGSFPALEVLDLTYNN-LNENSLPGN---FFYMTTLRALYLGDNDFE-I-LPPD-VGKLTNLQILSLRDN-DLLS 164 (264)
T ss_pred cCccccCCCchhhhhhccccc-cccccCCcc---hhHHHHHHHHHhcCCCcc-c-CChh-hhhhcceeEEeeccC-chhh
Confidence 455566778888888877633 332 11122 334466777777666532 2 3554 666788888887773 3334
Q ss_pred cccccccccccccCCCCCCcccEEecCCCCCCceec
Q 037794 195 VLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFC 230 (293)
Q Consensus 195 i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~ 230 (293)
++. .++. + .+|++|+|.+ ..++-++
T Consensus 165 lpk--eig~-------l-t~lrelhiqg-nrl~vlp 189 (264)
T KOG0617|consen 165 LPK--EIGD-------L-TRLRELHIQG-NRLTVLP 189 (264)
T ss_pred CcH--HHHH-------H-HHHHHHhccc-ceeeecC
Confidence 442 1111 3 6777777776 3555544
No 25
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.34 E-value=1.7e-06 Score=77.50 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=18.3
Q ss_pred CCcceEeeecCCCcccc--ccccchhhccCCC
Q 037794 240 PMLWSLTIENCPDMETF--ISNSVLHVTTDNK 269 (293)
Q Consensus 240 ~~L~~L~i~~C~~L~~l--~p~~l~~l~~~~~ 269 (293)
++|++|.|.+|..+... +|.+++.+.....
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcccCcccccccCcEEEeccc
Confidence 56777777777655311 3677777776433
No 26
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.32 E-value=5.8e-09 Score=91.23 Aligned_cols=217 Identities=22% Similarity=0.262 Sum_probs=141.1
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ 81 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~ 81 (293)
|.+..++.+++++. ++.++|...+. .++|+.++.+.. ++.+++.+ ++.+-.|+.++-.+ .++..+|.
T Consensus 88 g~l~~l~~l~vs~n-~ls~lp~~i~s--------~~~l~~l~~s~n-~~~el~~~--i~~~~~l~dl~~~~-N~i~slp~ 154 (565)
T KOG0472|consen 88 GELEALKSLNVSHN-KLSELPEQIGS--------LISLVKLDCSSN-ELKELPDS--IGRLLDLEDLDATN-NQISSLPE 154 (565)
T ss_pred HHHHHHHHhhcccc-hHhhccHHHhh--------hhhhhhhhcccc-ceeecCch--HHHHhhhhhhhccc-cccccCch
Confidence 34445566666663 66666665544 667777776553 34445544 44566666666654 35556666
Q ss_pred CccCCCCeeEEEeccccccccc----ccc---Cc-cchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCC
Q 037794 82 GIVSTPKLHEVQVSKKEEDELH----HWE---GN-KLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFN 153 (293)
Q Consensus 82 ~~~~~~~L~~L~l~~c~~~~~~----~~~---~~-~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 153 (293)
++..+.+|..+.+.+....... .|. .. .-...++.++++++.+.+|+.|++.. +.+..+|. +.+..
T Consensus 155 ~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPe-----f~gcs 228 (565)
T KOG0472|consen 155 DMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR-NKIRFLPE-----FPGCS 228 (565)
T ss_pred HHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh-cccccCCC-----CCccH
Confidence 6666666666555543111000 000 00 01246678889999999999999987 34555542 33557
Q ss_pred CccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCC
Q 037794 154 NLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFT 233 (293)
Q Consensus 154 ~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~ 233 (293)
.|+++++.... ++- +|......+++|..|++++ ++++++|+ ++. .+.+|+.|++++ ..++.++
T Consensus 229 ~L~Elh~g~N~-i~~-lpae~~~~L~~l~vLDLRd-Nklke~Pd--e~c--------lLrsL~rLDlSN-N~is~Lp--- 291 (565)
T KOG0472|consen 229 LLKELHVGENQ-IEM-LPAEHLKHLNSLLVLDLRD-NKLKEVPD--EIC--------LLRSLERLDLSN-NDISSLP--- 291 (565)
T ss_pred HHHHHHhcccH-HHh-hHHHHhcccccceeeeccc-cccccCch--HHH--------HhhhhhhhcccC-CccccCC---
Confidence 78999986553 333 4888888999999999999 88999884 221 237899999988 4566655
Q ss_pred CccccCCCcceEeeecCCCcccc
Q 037794 234 GNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 234 ~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
..++++ .|+.|.+.|.| |+.+
T Consensus 292 ~sLgnl-hL~~L~leGNP-lrTi 312 (565)
T KOG0472|consen 292 YSLGNL-HLKFLALEGNP-LRTI 312 (565)
T ss_pred cccccc-eeeehhhcCCc-hHHH
Confidence 788888 99999999987 7776
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.32 E-value=1.4e-07 Score=90.24 Aligned_cols=215 Identities=16% Similarity=0.132 Sum_probs=134.1
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ 115 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~ 115 (293)
-++|+.|..++++...-.. .+.-.+|+.++|+. .++..+|.|+..+.+|+.+.+.. ..+.
T Consensus 218 g~~l~~L~a~~n~l~~~~~----~p~p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~---------------N~l~ 277 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDV----HPVPLNLQYLDISH-NNLSNLPEWIGACANLEALNANH---------------NRLV 277 (1081)
T ss_pred CcchheeeeccCcceeecc----ccccccceeeecch-hhhhcchHHHHhcccceEecccc---------------hhHH
Confidence 3556666666665442111 12345788888876 56778888888899999998763 3456
Q ss_pred hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCC-CCeEEecCcccccc
Q 037794 116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSN-LRWLEVRNCDSLEE 194 (293)
Q Consensus 116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~-L~~L~i~~c~~l~~ 194 (293)
.++..+....+|+.|.+..+. +++++.. ...+..|+.|++.... +.+ +|...+..... |..|+.+. ..+..
T Consensus 278 ~lp~ri~~~~~L~~l~~~~ne-l~yip~~----le~~~sL~tLdL~~N~-L~~-lp~~~l~v~~~~l~~ln~s~-n~l~~ 349 (1081)
T KOG0618|consen 278 ALPLRISRITSLVSLSAAYNE-LEYIPPF----LEGLKSLRTLDLQSNN-LPS-LPDNFLAVLNASLNTLNVSS-NKLST 349 (1081)
T ss_pred hhHHHHhhhhhHHHHHhhhhh-hhhCCCc----ccccceeeeeeehhcc-ccc-cchHHHhhhhHHHHHHhhhh-ccccc
Confidence 777777788888888887743 6666532 2346788888886554 444 36654544333 45555443 33333
Q ss_pred cccccccc------------ccc--c-cCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccccc-
Q 037794 195 VLHLEELN------------ADK--E-HIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFIS- 258 (293)
Q Consensus 195 i~~~~~~~------------~~~--~-~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p- 258 (293)
.+..++.. ..+ . ...+.|++||.|++++ ..|.+++. ..+.++..|++|+++|. +|+.+ |
T Consensus 350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpa--s~~~kle~LeeL~LSGN-kL~~L-p~ 424 (1081)
T KOG0618|consen 350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPA--SKLRKLEELEELNLSGN-KLTTL-PD 424 (1081)
T ss_pred cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCH--HHHhchHHhHHHhcccc-hhhhh-hH
Confidence 32111100 000 0 1223468999999998 56777776 67788999999999996 89999 7
Q ss_pred -----ccchhhccCCCCCcccccccccccc
Q 037794 259 -----NSVLHVTTDNKEPQKLTSEENFLLA 283 (293)
Q Consensus 259 -----~~l~~l~~~~~~~~~l~~~~~~~~~ 283 (293)
..|+.++++.+....+.++..+|.+
T Consensus 425 tva~~~~L~tL~ahsN~l~~fPe~~~l~qL 454 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSNQLLSFPELAQLPQL 454 (1081)
T ss_pred HHHhhhhhHHHhhcCCceeechhhhhcCcc
Confidence 3455555566665555555555543
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.1e-08 Score=86.23 Aligned_cols=117 Identities=19% Similarity=0.144 Sum_probs=67.1
Q ss_pred hccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCC-ccCChhHHhccCCCCeEEecCccccccccccc
Q 037794 121 MIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMS-SAIPANLLRCLSNLRWLEVRNCDSLEEVLHLE 199 (293)
Q Consensus 121 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~-~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~ 199 (293)
+.++..|.+|+++.|.-..++. ...+. .--++|+.|.+++|.+.- ..=.......+|+|.+|++++|..++.- -..
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~V-tv~V~-hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~ 332 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKV-TVAVA-HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQ 332 (419)
T ss_pred HHhhhhHhhcCchHhhccchhh-hHHHh-hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-HHH
Confidence 4567777777777765433321 11011 112678888888776432 1101224556888888888887666541 111
Q ss_pred ccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecC
Q 037794 200 ELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC 250 (293)
Q Consensus 200 ~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C 250 (293)
.+ .-|+.|++|.++.|..+..-.. -.+...|+|.+|++.+|
T Consensus 333 ~~--------~kf~~L~~lSlsRCY~i~p~~~--~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 333 EF--------FKFNYLQHLSLSRCYDIIPETL--LELNSKPSLVYLDVFGC 373 (419)
T ss_pred HH--------HhcchheeeehhhhcCCChHHe--eeeccCcceEEEEeccc
Confidence 11 1358888888888876632110 23456788888888887
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1e-07 Score=80.56 Aligned_cols=164 Identities=20% Similarity=0.145 Sum_probs=100.0
Q ss_pred cccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc--ccCccCCCCeeEEEeccccccccccccCccchh
Q 037794 35 AFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF--SQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNS 112 (293)
Q Consensus 35 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l--p~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 112 (293)
.|.+|+.|.+++..--..+... +..=.+|++|+++.|..++.. ...+.+|+.|..|++++|....
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~--iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~----------- 274 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNT--IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFT----------- 274 (419)
T ss_pred HHHhhhhccccccccCcHHHHH--HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccc-----------
Confidence 3667777777665432333222 334568999999999988843 3345789999999999981111
Q ss_pred hhhhhhh-hhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccc
Q 037794 113 TIQKRYE-EMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDS 191 (293)
Q Consensus 113 ~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~ 191 (293)
..+.. ...--++|..|+++||-+--.+..-+.+ ....++|.+|++++|..+++- -..++-+++.|++|.+..|+.
T Consensus 275 --~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 275 --EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-VRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred --hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-HHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcC
Confidence 11111 1123467888888887432211110000 123589999999999888753 233466789999999999987
Q ss_pred ccccccccccccccccCCCCCCcccEEecCCCC
Q 037794 192 LEEVLHLEELNADKEHIGPLFPRLFILRLIDLP 224 (293)
Q Consensus 192 l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 224 (293)
+..-.. -... ..|.|.+|++.+|-
T Consensus 351 i~p~~~-~~l~--------s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 351 IIPETL-LELN--------SKPSLVYLDVFGCV 374 (419)
T ss_pred CChHHe-eeec--------cCcceEEEEecccc
Confidence 622111 0111 23888999988874
No 30
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.15 E-value=4.1e-07 Score=84.49 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=22.4
Q ss_pred cccEEecCCCCCCceeccCCCcccc-CCCcceEeeecCCCcccc
Q 037794 214 RLFILRLIDLPKLKRFCNFTGNIIE-MPMLWSLTIENCPDMETF 256 (293)
Q Consensus 214 ~L~~L~l~~~~~l~~~~~~~~~~~~-l~~L~~L~i~~C~~L~~l 256 (293)
.++.|.+..|...+.-.. ..... +..+..+++.+|+.+..-
T Consensus 402 ~l~~L~l~~~~~~t~~~l--~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGL--RCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred ccceEecccCccccccch--HHHhhhhhccccCCccCcccccch
Confidence 367777777766554322 11111 556666777777655544
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.3e-06 Score=77.42 Aligned_cols=165 Identities=15% Similarity=0.204 Sum_probs=89.6
Q ss_pred cCCCcceEeEcCCCCccccc--cCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCc
Q 037794 61 EFPSLERVFVTRCPNMKTFS--QGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRL 138 (293)
Q Consensus 61 ~~~~L~~L~i~~c~~l~~lp--~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l 138 (293)
++.+|+++.+.+|+ ....+ .....|++++.|+++.. +-.....+-.-+..+|+|+.|+++. +.+
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N------------L~~nw~~v~~i~eqLp~Le~LNls~-Nrl 184 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN------------LFHNWFPVLKIAEQLPSLENLNLSS-NRL 184 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh------------hHHhHHHHHHHHHhcccchhccccc-ccc
Confidence 56677777777653 22111 23456777777777743 2222233334456777888888776 334
Q ss_pred eEeccCCCCCcccCCCccEEEeccCCCC-CccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccE
Q 037794 139 KEIWHGQALPVSFFNNLFKLVVDDCANM-SSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFI 217 (293)
Q Consensus 139 ~~~~~~~~~~~~~l~~L~~L~i~~c~~l-~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~ 217 (293)
...+... --..++.|+.|.++.|..- ++ ...++..+|+|+.|.+.+...+ .+ .... ...+..|++
T Consensus 185 ~~~~~s~--~~~~l~~lK~L~l~~CGls~k~--V~~~~~~fPsl~~L~L~~N~~~-~~---~~~~------~~i~~~L~~ 250 (505)
T KOG3207|consen 185 SNFISSN--TTLLLSHLKQLVLNSCGLSWKD--VQWILLTFPSLEVLYLEANEII-LI---KATS------TKILQTLQE 250 (505)
T ss_pred cCCcccc--chhhhhhhheEEeccCCCCHHH--HHHHHHhCCcHHHhhhhccccc-ce---ecch------hhhhhHHhh
Confidence 4433332 1235677888888877643 22 1234566777877777764321 11 1000 013356777
Q ss_pred EecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794 218 LRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 218 L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
|+|++- ++.++... .....+|.|+.|.++.| .+.++
T Consensus 251 LdLs~N-~li~~~~~-~~~~~l~~L~~Lnls~t-gi~si 286 (505)
T KOG3207|consen 251 LDLSNN-NLIDFDQG-YKVGTLPGLNQLNLSST-GIASI 286 (505)
T ss_pred ccccCC-cccccccc-cccccccchhhhhcccc-Ccchh
Confidence 777763 33333321 23456777777777766 45555
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.97 E-value=7.9e-07 Score=77.92 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=46.7
Q ss_pred ceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc-cCC
Q 037794 8 VNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI-VST 86 (293)
Q Consensus 8 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~-~~~ 86 (293)
.++.++. .+++.+|... ...+++|++|++++. +++.+... ++.++++|.+|.+.+..+++.+|.+. ..+
T Consensus 70 veirLdq-N~I~~iP~~a-------F~~l~~LRrLdLS~N-~Is~I~p~-AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 70 VEIRLDQ-NQISSIPPGA-------FKTLHRLRRLDLSKN-NISFIAPD-AFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred eEEEecc-CCcccCChhh-------ccchhhhceeccccc-chhhcChH-hhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 4455544 3566666543 334788888888775 45555544 24467777777777767777776543 345
Q ss_pred CCeeEEEec
Q 037794 87 PKLHEVQVS 95 (293)
Q Consensus 87 ~~L~~L~l~ 95 (293)
.+|+.|.+.
T Consensus 140 ~slqrLllN 148 (498)
T KOG4237|consen 140 SSLQRLLLN 148 (498)
T ss_pred HHHHHHhcC
Confidence 555555443
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.92 E-value=1e-05 Score=64.73 Aligned_cols=84 Identities=26% Similarity=0.358 Sum_probs=26.7
Q ss_pred CCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccccccc
Q 037794 124 FRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNA 203 (293)
Q Consensus 124 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 203 (293)
+.+|+.|+++++. ++.+. + +..+++|+.|++++.. ++++ .......+|+|++|.+++ +++.++.....+..
T Consensus 41 l~~L~~L~Ls~N~-I~~l~--~---l~~L~~L~~L~L~~N~-I~~i-~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~ 111 (175)
T PF14580_consen 41 LDKLEVLDLSNNQ-ITKLE--G---LPGLPRLKTLDLSNNR-ISSI-SEGLDKNLPNLQELYLSN-NKISDLNELEPLSS 111 (175)
T ss_dssp -TT--EEE-TTS---S--T--T-------TT--EEE--SS----S--CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG
T ss_pred hcCCCEEECCCCC-Ccccc--C---ccChhhhhhcccCCCC-CCcc-ccchHHhCCcCCEEECcC-CcCCChHHhHHHHc
Confidence 4455555555532 33332 1 3355677777776554 3332 333234567777777776 55555432222222
Q ss_pred ccccCCCCCCcccEEecCCCC
Q 037794 204 DKEHIGPLFPRLFILRLIDLP 224 (293)
Q Consensus 204 ~~~~~~~~f~~L~~L~l~~~~ 224 (293)
+|+|+.|++.+.|
T Consensus 112 --------l~~L~~L~L~~NP 124 (175)
T PF14580_consen 112 --------LPKLRVLSLEGNP 124 (175)
T ss_dssp ---------TT--EEE-TT-G
T ss_pred --------CCCcceeeccCCc
Confidence 3777777777644
No 34
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.90 E-value=1.1e-06 Score=81.66 Aligned_cols=139 Identities=21% Similarity=0.177 Sum_probs=70.1
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCC-CCcccc----ccCccCCCCeeEEEeccccccccccccCccc
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRC-PNMKTF----SQGIVSTPKLHEVQVSKKEEDELHHWEGNKL 110 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c-~~l~~l----p~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~ 110 (293)
++.|+.+.+.+|..+...........+++|+.|++.+| ...... ......+++|+.|++.+|...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i---------- 256 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV---------- 256 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc----------
Confidence 56666666666655554333223445666777766653 222111 112234566666666665110
Q ss_pred hhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecC
Q 037794 111 NSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRN 188 (293)
Q Consensus 111 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~ 188 (293)
....+......+++|+.|.+.+|..+++..... + ...+++|++|++++|..+.+.........+++|+.|.+..
T Consensus 257 --sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~-i-~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 257 --TDIGLSALASRCPNLETLSLSNCSNLTDEGLVS-I-AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred --CchhHHHHHhhCCCcceEccCCCCccchhHHHH-H-HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 001111122336677777776776655433222 0 1234667777777777765432333355566666655444
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.85 E-value=3.2e-05 Score=50.54 Aligned_cols=58 Identities=33% Similarity=0.460 Sum_probs=30.0
Q ss_pred CccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794 126 DIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC 189 (293)
Q Consensus 126 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c 189 (293)
+|+.|+++++ .+..++.+. +..+++|++|+++++. ++.+ +...+.++++|++|++.++
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~---f~~l~~L~~L~l~~N~-l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDS---FSNLPNLETLDLSNNN-LTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTT---TTTGTTESEEEETSSS-ESEE-ETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHH---HcCCCCCCEeEccCCc-cCcc-CHHHHcCCCCCCEEeCcCC
Confidence 4555555554 455555443 3455566666665443 3332 4444555666666665553
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.71 E-value=6.8e-05 Score=48.96 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=19.0
Q ss_pred CccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccc
Q 037794 154 NLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEV 195 (293)
Q Consensus 154 ~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i 195 (293)
+|++|++++| .+..+ +...++++++|++|++.+ ..++.+
T Consensus 2 ~L~~L~l~~n-~l~~i-~~~~f~~l~~L~~L~l~~-N~l~~i 40 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEI-PPDSFSNLPNLETLDLSN-NNLTSI 40 (61)
T ss_dssp TESEEEETSS-TESEE-CTTTTTTGTTESEEEETS-SSESEE
T ss_pred cCcEEECCCC-CCCcc-CHHHHcCCCCCCEeEccC-CccCcc
Confidence 4555555555 33333 444455555555555554 334433
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.60 E-value=5.6e-05 Score=60.47 Aligned_cols=108 Identities=20% Similarity=0.267 Sum_probs=37.5
Q ss_pred ccCCCccEEEecCCCCceEeccCCCCCcc-cCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccc
Q 037794 122 IGFRDIERLQLSHFPRLKEIWHGQALPVS-FFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEE 200 (293)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 200 (293)
.+...+++|++.++. ++.+- + .+ .+.+|+.|+++++.--+ + ..+..++.|++|++.+ +.++++. ++
T Consensus 16 ~n~~~~~~L~L~~n~-I~~Ie--~---L~~~l~~L~~L~Ls~N~I~~-l---~~l~~L~~L~~L~L~~-N~I~~i~--~~ 82 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQ-ISTIE--N---LGATLDKLEVLDLSNNQITK-L---EGLPGLPRLKTLDLSN-NRISSIS--EG 82 (175)
T ss_dssp -----------------------S-----TT-TT--EEE-TTS--S------TT----TT--EEE--S-S---S-C--HH
T ss_pred ccccccccccccccc-ccccc--c---hhhhhcCCCEEECCCCCCcc-c---cCccChhhhhhcccCC-CCCCccc--cc
Confidence 344567888888743 44432 1 22 46899999999886433 2 2477799999999999 7777764 12
Q ss_pred cccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCC
Q 037794 201 LNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP 251 (293)
Q Consensus 201 ~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~ 251 (293)
... .+|+|++|.+.+ .++.++... ..+..+++|+.|++.++|
T Consensus 83 l~~-------~lp~L~~L~L~~-N~I~~l~~l-~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 83 LDK-------NLPNLQELYLSN-NKISDLNEL-EPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp HHH-------H-TT--EEE-TT-S---SCCCC-GGGGG-TT--EEE-TT-G
T ss_pred hHH-------hCCcCCEEECcC-CcCCChHHh-HHHHcCCCcceeeccCCc
Confidence 211 259999999987 466655332 467789999999998865
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.43 E-value=1.2e-05 Score=70.73 Aligned_cols=62 Identities=19% Similarity=0.098 Sum_probs=41.5
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcC
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTR 72 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~ 72 (293)
+.+++|+.|+++.. +++.|.+..- ..+++|..|.+.+...+++++.. .+.++.+|+.|.+.-
T Consensus 88 ~~l~~LRrLdLS~N-~Is~I~p~AF-------~GL~~l~~Lvlyg~NkI~~l~k~-~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 88 KTLHRLRRLDLSKN-NISFIAPDAF-------KGLASLLSLVLYGNNKITDLPKG-AFGGLSSLQRLLLNA 149 (498)
T ss_pred cchhhhceeccccc-chhhcChHhh-------hhhHhhhHHHhhcCCchhhhhhh-HhhhHHHHHHHhcCh
Confidence 56889999999985 7887776531 22677777887776677777654 233455555555543
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=4e-05 Score=74.12 Aligned_cols=160 Identities=17% Similarity=0.201 Sum_probs=98.9
Q ss_pred cccceeecccccccccccccc-------------ccccCCCcceEeEcCCCCcc-ccccCc-cCCCCeeEEEeccccccc
Q 037794 37 NELKFLELDDLPRLTSFCLEN-------------YTLEFPSLERVFVTRCPNMK-TFSQGI-VSTPKLHEVQVSKKEEDE 101 (293)
Q Consensus 37 ~~L~~L~l~~~~~l~~~~~~~-------------~~~~~~~L~~L~i~~c~~l~-~lp~~~-~~~~~L~~L~l~~c~~~~ 101 (293)
..|+++.+.++...+.+.... +...-.+|++|+|++-..+. .+|... ..+|+|++|.+.+-
T Consensus 83 ~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~---- 158 (699)
T KOG3665|consen 83 QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR---- 158 (699)
T ss_pred ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc----
Confidence 348888888777666555442 11245789999998854333 444333 45899999998863
Q ss_pred cccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCC
Q 037794 102 LHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNL 181 (293)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L 181 (293)
.-....+.....+||+|..|+|++.+ ++.++. ++.++||+.|.+++-.....- ....+-++++|
T Consensus 159 ---------~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~G-----IS~LknLq~L~mrnLe~e~~~-~l~~LF~L~~L 222 (699)
T KOG3665|consen 159 ---------QFDNDDFSQLCASFPNLRSLDISGTN-ISNLSG-----ISRLKNLQVLSMRNLEFESYQ-DLIDLFNLKKL 222 (699)
T ss_pred ---------eecchhHHHHhhccCccceeecCCCC-ccCcHH-----HhccccHHHHhccCCCCCchh-hHHHHhcccCC
Confidence 11122344455789999999999954 665532 678899999988877655421 22235568999
Q ss_pred CeEEecCccccccc--ccccccccccccCCCCCCcccEEecCC
Q 037794 182 RWLEVRNCDSLEEV--LHLEELNADKEHIGPLFPRLFILRLID 222 (293)
Q Consensus 182 ~~L~i~~c~~l~~i--~~~~~~~~~~~~~~~~f~~L~~L~l~~ 222 (293)
+.|+|+.-.....- .. +..+. ...+|.|+.|+.++
T Consensus 223 ~vLDIS~~~~~~~~~ii~----qYlec--~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIE----QYLEC--GMVLPELRFLDCSG 259 (699)
T ss_pred CeeeccccccccchHHHH----HHHHh--cccCccccEEecCC
Confidence 99999973322111 10 00000 01348888888875
No 40
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.31 E-value=2.9e-05 Score=74.99 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=61.8
Q ss_pred cccceeeccccccccccccccccccCCCcceEeEcCCCCcc-ccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794 37 NELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMK-TFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ 115 (293)
Q Consensus 37 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~-~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~ 115 (293)
.+|+.|++.+...+..-+.......||+|+.|.+.+-.... .+.....++|+|+.|+|+++ .+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T---------------nI~ 186 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT---------------NIS 186 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC---------------Ccc
Confidence 45666666554333222222223356666666666532222 23333445666666666654 111
Q ss_pred hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCcc-CCh---hHHhccCCCCeEEecC
Q 037794 116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSA-IPA---NLLRCLSNLRWLEVRN 188 (293)
Q Consensus 116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~-~p~---~~~~~l~~L~~L~i~~ 188 (293)
.+ ..+..+++|+.|.+.++.-....-. .....+.+|+.|+|++-....+. +.. +.-..+|+|+.|+.++
T Consensus 187 nl-~GIS~LknLq~L~mrnLe~e~~~~l---~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 187 NL-SGISRLKNLQVLSMRNLEFESYQDL---IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred Cc-HHHhccccHHHHhccCCCCCchhhH---HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 11 2335566666666665442221000 11345666666666655444331 000 1122366677776665
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.04 E-value=0.00041 Score=59.34 Aligned_cols=179 Identities=15% Similarity=0.194 Sum_probs=84.1
Q ss_pred cCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccc-------c--CccchhhhhhhhhhhccCCCccEEE
Q 037794 61 EFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHW-------E--GNKLNSTIQKRYEEMIGFRDIERLQ 131 (293)
Q Consensus 61 ~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~-------~--~~~~~~~~~~l~~~~~~~~~L~~L~ 131 (293)
-|.+|+.+.++.|..-. +-.....-|.|+++++........... + +.+.....+.+...+..+..|+.++
T Consensus 212 ~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD 290 (490)
T KOG1259|consen 212 AFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELD 290 (490)
T ss_pred Hhhhhheeeeeccchhh-eeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence 45677777777774211 111122346666666655422111000 0 0001112223334455666777777
Q ss_pred ecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccccccc--------
Q 037794 132 LSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNA-------- 203 (293)
Q Consensus 132 l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~-------- 203 (293)
+++ +.++.+-.. +.-.|.++.|.+++.....- ..++.+++|+.|++++ +.+.++. |.+.
T Consensus 291 LS~-N~I~~iDES----vKL~Pkir~L~lS~N~i~~v----~nLa~L~~L~~LDLS~-N~Ls~~~---Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 291 LSG-NLITQIDES----VKLAPKLRRLILSQNRIRTV----QNLAELPQLQLLDLSG-NLLAECV---GWHLKLGNIKTL 357 (490)
T ss_pred ccc-cchhhhhhh----hhhccceeEEeccccceeee----hhhhhcccceEeeccc-chhHhhh---hhHhhhcCEeee
Confidence 766 234433311 22346666677666653331 1255566677776666 3333331 1100
Q ss_pred -------ccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794 204 -------DKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 204 -------~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
.+-+..+-+.+|..|++.+ ++++.+..- .+++++|.|+.+.+.+.| |..+
T Consensus 358 ~La~N~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV-~~IG~LPCLE~l~L~~NP-l~~~ 414 (490)
T KOG1259|consen 358 KLAQNKIETLSGLRKLYSLVNLDLSS-NQIEELDEV-NHIGNLPCLETLRLTGNP-LAGS 414 (490)
T ss_pred ehhhhhHhhhhhhHhhhhheeccccc-cchhhHHHh-cccccccHHHHHhhcCCC-cccc
Confidence 0000001125666666665 233332111 467788888888888876 5555
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.97 E-value=7.1e-05 Score=64.87 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=48.5
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeecccccc--cc-ccccc-----cccccCCCcceEeEcCCCC
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPR--LT-SFCLE-----NYTLEFPSLERVFVTRCPN 75 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~--l~-~~~~~-----~~~~~~~~L~~L~i~~c~~ 75 (293)
+..++++++++.+.-++..... +.....-++|+.-+++++-. ++ +++.. .....+|+|+.|++++...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i----~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAI----AKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred cCceEEEeccCCchhHHHHHHH----HHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 4566777777754333222211 11223355677777766521 11 11111 1234677888888888532
Q ss_pred cc----ccccCccCCCCeeEEEeccc
Q 037794 76 MK----TFSQGIVSTPKLHEVQVSKK 97 (293)
Q Consensus 76 l~----~lp~~~~~~~~L~~L~l~~c 97 (293)
=. .+-..++++..|+.|.+.+|
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcC
Confidence 21 23334567888888888887
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.91 E-value=0.0012 Score=60.12 Aligned_cols=172 Identities=17% Similarity=0.257 Sum_probs=92.4
Q ss_pred ccccceeeccccccccccccccccccC-CCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEF-PSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI 114 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 114 (293)
++.+..|.+.+. .+.+++.. ...+ ++|+.|++++ ..+..+|..+..+++|+.|.++.+ .+
T Consensus 115 ~~~l~~L~l~~n-~i~~i~~~--~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N---------------~l 175 (394)
T COG4886 115 LTNLTSLDLDNN-NITDIPPL--IGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN---------------DL 175 (394)
T ss_pred ccceeEEecCCc-ccccCccc--cccchhhcccccccc-cchhhhhhhhhccccccccccCCc---------------hh
Confidence 344555555443 23334332 1233 2677777765 456666555667777777777654 33
Q ss_pred hhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccc
Q 037794 115 QKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEE 194 (293)
Q Consensus 115 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~ 194 (293)
..++......++|+.|.+++ ..+..++.. +.....|+++.+.+...... +. .+..+.++..+.+.+ ..+..
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~----~~~~~~L~~l~~~~N~~~~~--~~-~~~~~~~l~~l~l~~-n~~~~ 246 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSG-NKISDLPPE----IELLSALEELDLSNNSIIEL--LS-SLSNLKNLSGLELSN-NKLED 246 (394)
T ss_pred hhhhhhhhhhhhhhheeccC-CccccCchh----hhhhhhhhhhhhcCCcceec--ch-hhhhcccccccccCC-ceeee
Confidence 34444433566777777776 334444421 11223477777766643332 21 244455665555433 33332
Q ss_pred cccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecC
Q 037794 195 VLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC 250 (293)
Q Consensus 195 i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C 250 (293)
++ ... ...+.+++|++.+ ..+++++ .+..+.+++.|++++-
T Consensus 247 ~~--~~~--------~~l~~l~~L~~s~-n~i~~i~----~~~~~~~l~~L~~s~n 287 (394)
T COG4886 247 LP--ESI--------GNLSNLETLDLSN-NQISSIS----SLGSLTNLRELDLSGN 287 (394)
T ss_pred cc--chh--------ccccccceecccc-ccccccc----cccccCccCEEeccCc
Confidence 21 111 1226788888877 3566663 3667788888888874
No 44
>PLN03150 hypothetical protein; Provisional
Probab=96.91 E-value=0.0019 Score=62.30 Aligned_cols=69 Identities=20% Similarity=0.170 Sum_probs=40.3
Q ss_pred hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcc
Q 037794 116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCD 190 (293)
Q Consensus 116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~ 190 (293)
.++..+..+++|+.|+++++.-...++. .+..+++|+.|+++++..... +|.. +..+++|+.|++.++.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~-iP~~-l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGS-IPES-LGQLTSLRILNLNGNS 501 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCC-CchH-HhcCCCCCEEECcCCc
Confidence 3444556677777777776432222221 144567777777777654443 2543 6667777777777754
No 45
>PLN03150 hypothetical protein; Provisional
Probab=96.69 E-value=0.0026 Score=61.38 Aligned_cols=111 Identities=13% Similarity=0.007 Sum_probs=72.0
Q ss_pred ccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhh
Q 037794 38 ELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKR 117 (293)
Q Consensus 38 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l 117 (293)
.++.|++.++..-..++.. ...+++|+.|+++++.....+|..+..+++|+.|+++++ ...+.+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~--i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N--------------~lsg~i 482 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND--ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN--------------SFNGSI 482 (623)
T ss_pred EEEEEECCCCCccccCCHH--HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC--------------CCCCCC
Confidence 3677777776433334433 557889999999887554577777888899999998865 333445
Q ss_pred hhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCC
Q 037794 118 YEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMS 167 (293)
Q Consensus 118 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~ 167 (293)
+..+..+++|+.|+++++.--..++.. + ...+.++..+.+.++..+.
T Consensus 483 P~~l~~L~~L~~L~Ls~N~l~g~iP~~--l-~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 483 PESLGQLTSLRILNLNGNSLSGRVPAA--L-GGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred chHHhcCCCCCEEECcCCcccccCChH--H-hhccccCceEEecCCcccc
Confidence 666778889999999886533333321 0 1112456677777665444
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.55 E-value=0.002 Score=58.55 Aligned_cols=170 Identities=21% Similarity=0.301 Sum_probs=97.1
Q ss_pred CCcceEeccccccceEecccccccccccccccc-ccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794 5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFN-ELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI 83 (293)
Q Consensus 5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~ 83 (293)
+.++.|.+.+. .+..++...+ .+. +|+.|++++. .+..++.. ...+++|+.|.+.++ .+..+|...
T Consensus 116 ~~l~~L~l~~n-~i~~i~~~~~--------~~~~nL~~L~l~~N-~i~~l~~~--~~~l~~L~~L~l~~N-~l~~l~~~~ 182 (394)
T COG4886 116 TNLTSLDLDNN-NITDIPPLIG--------LLKSNLKELDLSDN-KIESLPSP--LRNLPNLKNLDLSFN-DLSDLPKLL 182 (394)
T ss_pred cceeEEecCCc-ccccCccccc--------cchhhccccccccc-chhhhhhh--hhccccccccccCCc-hhhhhhhhh
Confidence 45666666553 5555554332 253 8999998775 34555321 447899999999986 567676655
Q ss_pred cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794 84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC 163 (293)
Q Consensus 84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c 163 (293)
...++|+.|.+++. .+..++..+.....|+++.+.+...+..+ ..+..+.++..+.+.+.
T Consensus 183 ~~~~~L~~L~ls~N---------------~i~~l~~~~~~~~~L~~l~~~~N~~~~~~-----~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 183 SNLSNLNNLDLSGN---------------KISDLPPEIELLSALEELDLSNNSIIELL-----SSLSNLKNLSGLELSNN 242 (394)
T ss_pred hhhhhhhheeccCC---------------ccccCchhhhhhhhhhhhhhcCCcceecc-----hhhhhcccccccccCCc
Confidence 57888999988864 33444444334455777777764322211 11334455555554333
Q ss_pred CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCC
Q 037794 164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLID 222 (293)
Q Consensus 164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~ 222 (293)
. +.+. + .....++++++|++.+ ..++++.. .. .+.+++.|++.+
T Consensus 243 ~-~~~~-~-~~~~~l~~l~~L~~s~-n~i~~i~~---~~--------~~~~l~~L~~s~ 286 (394)
T COG4886 243 K-LEDL-P-ESIGNLSNLETLDLSN-NQISSISS---LG--------SLTNLRELDLSG 286 (394)
T ss_pred e-eeec-c-chhccccccceecccc-cccccccc---cc--------ccCccCEEeccC
Confidence 2 2221 2 2356667777777776 44555432 11 125666666665
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.55 E-value=0.00075 Score=57.76 Aligned_cols=110 Identities=17% Similarity=0.253 Sum_probs=73.3
Q ss_pred CCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794 153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF 232 (293)
Q Consensus 153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~ 232 (293)
.-|+++++++.. .+. |.++ ..-+|.++.|++++ +.+..+. ..+. + ++|..|++++ +.++.+..
T Consensus 284 q~LtelDLS~N~-I~~-iDES-vKL~Pkir~L~lS~-N~i~~v~---nLa~-------L-~~L~~LDLS~-N~Ls~~~G- 346 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQ-IDES-VKLAPKLRRLILSQ-NRIRTVQ---NLAE-------L-PQLQLLDLSG-NLLAECVG- 346 (490)
T ss_pred hhhhhccccccc-hhh-hhhh-hhhccceeEEeccc-cceeeeh---hhhh-------c-ccceEeeccc-chhHhhhh-
Confidence 668899998764 332 3444 56689999999998 6665553 2222 4 9999999998 45666532
Q ss_pred CCccccCCCcceEeeecCCCccccccccchhhcc---------CCCCCccccccccccccc
Q 037794 233 TGNIIEMPMLWSLTIENCPDMETFISNSVLHVTT---------DNKEPQKLTSEENFLLAH 284 (293)
Q Consensus 233 ~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~~---------~~~~~~~l~~~~~~~~~~ 284 (293)
.-..+.+.++|.+++. .++++ ++++++.+ ++.+.+.+..+.++|=+.
T Consensus 347 --wh~KLGNIKtL~La~N-~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE 402 (490)
T KOG1259|consen 347 --WHLKLGNIKTLKLAQN-KIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE 402 (490)
T ss_pred --hHhhhcCEeeeehhhh-hHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHH
Confidence 2356788999999885 67776 46666665 344455555666666433
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.48 E-value=0.004 Score=37.63 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=25.0
Q ss_pred CcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794 213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
++|++|++.+. ++++++ ..+..+++|+.|+++++ +++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~---~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLP---PELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHG---GHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCC-CCcccC---chHhCCCCCCEEEecCC-CCCCC
Confidence 46777777774 566663 33677777777777777 46665
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.36 E-value=0.00017 Score=66.50 Aligned_cols=157 Identities=22% Similarity=0.254 Sum_probs=100.7
Q ss_pred cCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceE
Q 037794 61 EFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKE 140 (293)
Q Consensus 61 ~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 140 (293)
.|..|+.+.+.. +.+..+|..+.++..|..++++.. .+..++..+. .-=|+.|.+++ ++++.
T Consensus 96 ~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~N---------------qlS~lp~~lC-~lpLkvli~sN-Nkl~~ 157 (722)
T KOG0532|consen 96 AFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSN---------------QLSHLPDGLC-DLPLKVLIVSN-NKLTS 157 (722)
T ss_pred HHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccc---------------hhhcCChhhh-cCcceeEEEec-Ccccc
Confidence 344444444432 234455666666677777766531 2223333322 33467777777 55676
Q ss_pred eccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEec
Q 037794 141 IWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRL 220 (293)
Q Consensus 141 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l 220 (293)
++ .+++..+.|..|+.++|.... + |.. +.++.+|+.|.++. +.+..++.... . -.|..|++
T Consensus 158 lp----~~ig~~~tl~~ld~s~nei~s-l-psq-l~~l~slr~l~vrR-n~l~~lp~El~--~---------LpLi~lDf 218 (722)
T KOG0532|consen 158 LP----EEIGLLPTLAHLDVSKNEIQS-L-PSQ-LGYLTSLRDLNVRR-NHLEDLPEELC--S---------LPLIRLDF 218 (722)
T ss_pred CC----cccccchhHHHhhhhhhhhhh-c-hHH-hhhHHHHHHHHHhh-hhhhhCCHHHh--C---------Cceeeeec
Confidence 66 335667889999998776544 2 554 77788999999888 66666663211 1 35778888
Q ss_pred CCCCCCceeccCCCccccCCCcceEeeecCCCcccccccc
Q 037794 221 IDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNS 260 (293)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~ 260 (293)
+ |+++..++ -.+..|..|++|.+.+.| |++- |..
T Consensus 219 S-cNkis~iP---v~fr~m~~Lq~l~LenNP-LqSP-PAq 252 (722)
T KOG0532|consen 219 S-CNKISYLP---VDFRKMRHLQVLQLENNP-LQSP-PAQ 252 (722)
T ss_pred c-cCceeecc---hhhhhhhhheeeeeccCC-CCCC-hHH
Confidence 6 57888876 577889999999999876 8887 643
No 50
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.00065 Score=54.78 Aligned_cols=72 Identities=25% Similarity=0.385 Sum_probs=44.7
Q ss_pred HhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcc
Q 037794 175 LRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDME 254 (293)
Q Consensus 175 ~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~ 254 (293)
+..++.++.|.+.+|..+.+-. .+.+.. .+|+|+.|+|++|+.+++-.. ..+..+++|+.|.+++.|...
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~-L~~l~~-------~~~~L~~L~lsgC~rIT~~GL--~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWC-LERLGG-------LAPSLQDLDLSGCPRITDGGL--ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHH-HHHhcc-------cccchheeeccCCCeechhHH--HHHHHhhhhHHHHhcCchhhh
Confidence 4556666777777777665432 122222 447788888888887777543 456677777777777765444
Q ss_pred cc
Q 037794 255 TF 256 (293)
Q Consensus 255 ~l 256 (293)
.+
T Consensus 191 ~~ 192 (221)
T KOG3864|consen 191 NL 192 (221)
T ss_pred ch
Confidence 43
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.91 E-value=0.0016 Score=60.25 Aligned_cols=125 Identities=22% Similarity=0.355 Sum_probs=72.2
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ 115 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~ 115 (293)
+..|..++|+.. .+..++.. ++.+| |+.|-+++ ++++.+|..+...+.|..|+.+.| .+.
T Consensus 120 L~~lt~l~ls~N-qlS~lp~~--lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n---------------ei~ 179 (722)
T KOG0532|consen 120 LEALTFLDLSSN-QLSHLPDG--LCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN---------------EIQ 179 (722)
T ss_pred hhHHHHhhhccc-hhhcCChh--hhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhh---------------hhh
Confidence 555555665443 23334443 22333 77777776 678888888888888888888866 344
Q ss_pred hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794 116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC 189 (293)
Q Consensus 116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c 189 (293)
.++..+..+.+|+.|.+.. +++.+++..- .. -.|.+|+++ |.++..+ |.. +..|..|+.|.+.+.
T Consensus 180 slpsql~~l~slr~l~vrR-n~l~~lp~El----~~-LpLi~lDfS-cNkis~i-Pv~-fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 180 SLPSQLGYLTSLRDLNVRR-NHLEDLPEEL----CS-LPLIRLDFS-CNKISYL-PVD-FRKMRHLQVLQLENN 244 (722)
T ss_pred hchHHhhhHHHHHHHHHhh-hhhhhCCHHH----hC-Cceeeeecc-cCceeec-chh-hhhhhhheeeeeccC
Confidence 5555556666666666655 2344433221 11 235556663 4455543 554 566666666666653
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.74 E-value=0.013 Score=35.29 Aligned_cols=33 Identities=15% Similarity=0.354 Sum_probs=16.7
Q ss_pred CcceEeEcCCCCccccccCccCCCCeeEEEeccc
Q 037794 64 SLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKK 97 (293)
Q Consensus 64 ~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c 97 (293)
+|++|+++++ +++.+|..++++++|+.|+++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 4555555553 44455444455555555555544
No 53
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.0013 Score=53.09 Aligned_cols=60 Identities=20% Similarity=0.379 Sum_probs=38.8
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cCccCCCCeeEEEec
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QGIVSTPKLHEVQVS 95 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~~~~~~~L~~L~l~ 95 (293)
++.++.|.+.+|..+.+|+.+....-.++|+.|+|++|+.++... ..+..+++|+.|.+.
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 566677777777777777766555566777777777777777321 233445666666554
No 54
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.49 E-value=0.0083 Score=30.30 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=16.7
Q ss_pred CcceEeeecCCCccccccccchhh
Q 037794 241 MLWSLTIENCPDMETFISNSVLHV 264 (293)
Q Consensus 241 ~L~~L~i~~C~~L~~l~p~~l~~l 264 (293)
+|++|++++| +++.+ |++++.+
T Consensus 1 ~L~~Ldls~n-~l~~i-p~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSI-PSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEE-GTTTTT-
T ss_pred CccEEECCCC-cCEeC-ChhhcCC
Confidence 5788889988 78887 8877653
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=0.011 Score=50.78 Aligned_cols=68 Identities=19% Similarity=0.132 Sum_probs=31.1
Q ss_pred hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecC
Q 037794 116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRN 188 (293)
Q Consensus 116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~ 188 (293)
.+...+..+|.|+.|+++..+ +...- +. .| ....+|+.|.+.+-..--.. ..+.+..+|.+++|+++.
T Consensus 88 eI~~ile~lP~l~~LNls~N~-L~s~I-~~-lp-~p~~nl~~lVLNgT~L~w~~-~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 88 EIGAILEQLPALTTLNLSCNS-LSSDI-KS-LP-LPLKNLRVLVLNGTGLSWTQ-STSSLDDLPKVTELHMSD 155 (418)
T ss_pred HHHHHHhcCccceEeeccCCc-CCCcc-cc-Cc-ccccceEEEEEcCCCCChhh-hhhhhhcchhhhhhhhcc
Confidence 333444566666666665432 22111 11 22 22356666666543311110 223355566666666665
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.69 E-value=0.27 Score=36.64 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=19.6
Q ss_pred CCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEec
Q 037794 125 RDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVR 187 (293)
Q Consensus 125 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~ 187 (293)
.+|+.+.+.+ .+..+.... +....+|+.+.+.+. +..+ ...++.++++|+.+.+.
T Consensus 12 ~~l~~i~~~~--~~~~I~~~~---F~~~~~l~~i~~~~~--~~~i-~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 12 SNLESITFPN--TIKKIGENA---FSNCTSLKSINFPNN--LTSI-GDNAFSNCKSLESITFP 66 (129)
T ss_dssp TT--EEEETS--T--EE-TTT---TTT-TT-SEEEESST--TSCE--TTTTTT-TT-EEEEET
T ss_pred CCCCEEEECC--CeeEeChhh---ccccccccccccccc--cccc-ceeeeeccccccccccc
Confidence 3444444442 234444333 333345555555431 3332 33345555555555554
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.40 E-value=0.0082 Score=52.41 Aligned_cols=228 Identities=18% Similarity=0.151 Sum_probs=125.3
Q ss_pred CCCcceEeccccccceEecccccc----ccccccccccccceeeccccccccccc--cccccccCCCcceEeEcCCCCcc
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGE----EAKENRIAFNELKFLELDDLPRLTSFC--LENYTLEFPSLERVFVTRCPNMK 77 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~----~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~~L~i~~c~~l~ 77 (293)
.++|++.++++. .+..+..... ..+.....+|+|++++|+|...-.... ......++.+|++|.+.+|. +.
T Consensus 57 ~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg 133 (382)
T KOG1909|consen 57 KKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LG 133 (382)
T ss_pred cccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CC
Confidence 456777777753 2322222111 012344457899999999975332221 11223478999999999984 43
Q ss_pred cc--------------ccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEecc
Q 037794 78 TF--------------SQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWH 143 (293)
Q Consensus 78 ~l--------------p~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 143 (293)
.. -.-....++|+.+..... +-.+..-..+-..+...+.|+.+.+.... +..-.+
T Consensus 134 ~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN----------rlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~ 202 (382)
T KOG1909|consen 134 PEAGGRLGRALFELAVNKKAASKPKLRVFICGRN----------RLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGV 202 (382)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc----------ccccccHHHHHHHHHhccccceEEEeccc-ccCchh
Confidence 21 112345688888876532 00011112233344667888888887632 332211
Q ss_pred CCC-CCcccCCCccEEEeccCCCCCcc--CChhHHhccCCCCeEEecCccccccccccccc-ccccccCCCCCCcccEEe
Q 037794 144 GQA-LPVSFFNNLFKLVVDDCANMSSA--IPANLLRCLSNLRWLEVRNCDSLEEVLHLEEL-NADKEHIGPLFPRLFILR 219 (293)
Q Consensus 144 ~~~-~~~~~l~~L~~L~i~~c~~l~~~--~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~-~~~~~~~~~~f~~L~~L~ 219 (293)
... ......++|+.|+++++..-..- .....+..+++|+.|++.+|.- +. .|. ...+.... .+|+|+.|.
T Consensus 203 ~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll-~~----~Ga~a~~~al~~-~~p~L~vl~ 276 (382)
T KOG1909|consen 203 TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL-EN----EGAIAFVDALKE-SAPSLEVLE 276 (382)
T ss_pred HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc-cc----ccHHHHHHHHhc-cCCCCceec
Confidence 000 11345689999999888755432 1122355577888899998852 11 111 10111111 358999999
Q ss_pred cCCCCCCceecc--CCCccccCCCcceEeeecCCCc
Q 037794 220 LIDLPKLKRFCN--FTGNIIEMPMLWSLTIENCPDM 253 (293)
Q Consensus 220 l~~~~~l~~~~~--~~~~~~~l~~L~~L~i~~C~~L 253 (293)
+.++. ++.-.. ....+...|.|+.|++++| .+
T Consensus 277 l~gNe-It~da~~~la~~~~ek~dL~kLnLngN-~l 310 (382)
T KOG1909|consen 277 LAGNE-ITRDAALALAACMAEKPDLEKLNLNGN-RL 310 (382)
T ss_pred cCcch-hHHHHHHHHHHHHhcchhhHHhcCCcc-cc
Confidence 98864 332110 0023455789999999998 45
No 58
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.22 E-value=0.033 Score=26.14 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=9.5
Q ss_pred CCcceEeeecCCCcccc
Q 037794 240 PMLWSLTIENCPDMETF 256 (293)
Q Consensus 240 ~~L~~L~i~~C~~L~~l 256 (293)
++|+.|++++|. |+++
T Consensus 1 ~~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSL 16 (17)
T ss_dssp TT-SEEEETSS---SSE
T ss_pred CccCEEECCCCC-CCCC
Confidence 467778888874 7766
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.09 E-value=0.079 Score=45.67 Aligned_cols=70 Identities=19% Similarity=0.131 Sum_probs=35.1
Q ss_pred ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccc
Q 037794 122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEV 195 (293)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i 195 (293)
.-||++..+.+..|| ++...... ....++.+--|.+.. ..+.++-....+.++++|..|++...+-...+
T Consensus 196 r~Fpnv~sv~v~e~P-lK~~s~ek--~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGP-LKTESSEK--GSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhcccchheeeecCc-ccchhhcc--cCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 457788888887776 33322111 011223333333321 22233223345667788888877776554444
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.91 E-value=0.16 Score=41.38 Aligned_cols=87 Identities=24% Similarity=0.407 Sum_probs=45.2
Q ss_pred cCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceec
Q 037794 151 FFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFC 230 (293)
Q Consensus 151 ~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~ 230 (293)
.+++|..|.+.+.. +.++ .......+++|+.|.+.+ +++..+.+.+.... +|+|++|.+.+-+ +++..
T Consensus 62 ~l~rL~tLll~nNr-It~I-~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~--------~p~L~~Ltll~Np-v~~k~ 129 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNR-ITRI-DPDLDTFLPNLKTLILTN-NSIQELGDLDPLAS--------CPKLEYLTLLGNP-VEHKK 129 (233)
T ss_pred CccccceEEecCCc-ceee-ccchhhhccccceEEecC-cchhhhhhcchhcc--------CCccceeeecCCc-hhccc
Confidence 45666666665443 3333 333345566777777776 55555544343333 3677777766532 22221
Q ss_pred cCC-CccccCCCcceEeeec
Q 037794 231 NFT-GNIIEMPMLWSLTIEN 249 (293)
Q Consensus 231 ~~~-~~~~~l~~L~~L~i~~ 249 (293)
... ..+..+|+|+.|+..+
T Consensus 130 ~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 130 NYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CceeEEEEecCcceEeehhh
Confidence 100 2345566666666554
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.29 E-value=0.033 Score=46.78 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=15.8
Q ss_pred CCCccEEEeccC--CCCCccCChhHHhccCCCCeEEecC
Q 037794 152 FNNLFKLVVDDC--ANMSSAIPANLLRCLSNLRWLEVRN 188 (293)
Q Consensus 152 l~~L~~L~i~~c--~~l~~~~p~~~~~~l~~L~~L~i~~ 188 (293)
+++|++|.+++. +....+ +. .+..+|+|+++++++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l-~v-l~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGL-EV-LAEKAPNLKVLNLSG 100 (260)
T ss_pred cchhhhhcccCCcccccccc-ee-hhhhCCceeEEeecC
Confidence 455555555544 222221 11 133346666666555
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.67 E-value=0.15 Score=41.45 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=55.8
Q ss_pred CCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794 153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF 232 (293)
Q Consensus 153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~ 232 (293)
.+...+++++....+. ..+..++.|.+|.+.+ +.++.|. ..+.. .+|+|..|.+.+ .++..+...
T Consensus 42 d~~d~iDLtdNdl~~l----~~lp~l~rL~tLll~n-NrIt~I~--p~L~~-------~~p~l~~L~Ltn-Nsi~~l~dl 106 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL----DNLPHLPRLHTLLLNN-NRITRID--PDLDT-------FLPNLKTLILTN-NSIQELGDL 106 (233)
T ss_pred cccceecccccchhhc----ccCCCccccceEEecC-Ccceeec--cchhh-------hccccceEEecC-cchhhhhhc
Confidence 4567777777764442 2367788999999998 7788875 33333 569999999988 455544332
Q ss_pred CCccccCCCcceEeeec
Q 037794 233 TGNIIEMPMLWSLTIEN 249 (293)
Q Consensus 233 ~~~~~~l~~L~~L~i~~ 249 (293)
..+..+|.|++|.+-+
T Consensus 107 -~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 107 -DPLASCPKLEYLTLLG 122 (233)
T ss_pred -chhccCCccceeeecC
Confidence 4677788888887654
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.49 E-value=1 Score=33.44 Aligned_cols=55 Identities=9% Similarity=0.183 Sum_probs=20.5
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC-ccCCCCeeEEEec
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG-IVSTPKLHEVQVS 95 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~-~~~~~~L~~L~l~ 95 (293)
+++|+.+.+.+ .++.+... ....+++|+.+.+.+ .+..++.. +.++++|+.+.+.
T Consensus 11 ~~~l~~i~~~~--~~~~I~~~-~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 11 CSNLESITFPN--TIKKIGEN-AFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp -TT--EEEETS--T--EE-TT-TTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEET
T ss_pred CCCCCEEEECC--CeeEeChh-hcccccccccccccc--cccccceeeeeccccccccccc
Confidence 44566665542 23333222 122455666666654 24444322 2445556666654
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.21 E-value=0.082 Score=44.50 Aligned_cols=111 Identities=21% Similarity=0.283 Sum_probs=60.2
Q ss_pred cCCCcceEeEcCCCCcc--ccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCc
Q 037794 61 EFPSLERVFVTRCPNMK--TFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRL 138 (293)
Q Consensus 61 ~~~~L~~L~i~~c~~l~--~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l 138 (293)
.+..|+.|.+.++...+ .+| .+|+|+.|.++.. ...-...+..-...+|+|+.+++++ +.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P----~Lp~LkkL~lsdn------------~~~~~~~l~vl~e~~P~l~~l~ls~-Nki 103 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFP----KLPKLKKLELSDN------------YRRVSGGLEVLAEKAPNLKVLNLSG-NKI 103 (260)
T ss_pred cccchhhhhhhccceeecccCC----CcchhhhhcccCC------------cccccccceehhhhCCceeEEeecC-Ccc
Confidence 45566666666653222 333 4567777766532 0001111112223457777777776 333
Q ss_pred eEeccCCCCCcccCCCccEEEeccCCCCC--ccCChhHHhccCCCCeEEecCccc
Q 037794 139 KEIWHGQALPVSFFNNLFKLVVDDCANMS--SAIPANLLRCLSNLRWLEVRNCDS 191 (293)
Q Consensus 139 ~~~~~~~~~~~~~l~~L~~L~i~~c~~l~--~~~p~~~~~~l~~L~~L~i~~c~~ 191 (293)
..+ ...-|...+.+|..|.+.+|.... +. -..++.-+++|+.|+-..+..
T Consensus 104 ~~l--stl~pl~~l~nL~~Ldl~n~~~~~l~dy-re~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 104 KDL--STLRPLKELENLKSLDLFNCSVTNLDDY-REKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred ccc--cccchhhhhcchhhhhcccCCccccccH-HHHHHHHhhhhccccccccCC
Confidence 332 111234567788888888887543 21 235677788888887776543
No 65
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=90.42 E-value=0.034 Score=53.41 Aligned_cols=78 Identities=22% Similarity=0.277 Sum_probs=41.6
Q ss_pred CCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceecc
Q 037794 152 FNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCN 231 (293)
Q Consensus 152 l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~ 231 (293)
++.|+.|+++++...+- ..+..++.|++|++++ +.+..++.+.-. . -+|..|.++| +.++.+
T Consensus 186 l~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~---------g-c~L~~L~lrn-N~l~tL-- 247 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSY-NCLRHVPQLSMV---------G-CKLQLLNLRN-NALTTL-- 247 (1096)
T ss_pred HHHhhhhccchhhhhhh----HHHHhccccccccccc-chhccccccchh---------h-hhheeeeecc-cHHHhh--
Confidence 45566666666653331 2456667777777766 455555432110 1 2355555555 345554
Q ss_pred CCCccccCCCcceEeeec
Q 037794 232 FTGNIIEMPMLWSLTIEN 249 (293)
Q Consensus 232 ~~~~~~~l~~L~~L~i~~ 249 (293)
-++.++.+|+.|++++
T Consensus 248 --~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 248 --RGIENLKSLYGLDLSY 263 (1096)
T ss_pred --hhHHhhhhhhccchhH
Confidence 4555666666666654
No 66
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=90.32 E-value=0.18 Score=26.41 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=14.2
Q ss_pred CCCcceEeeecCCCcccc
Q 037794 239 MPMLWSLTIENCPDMETF 256 (293)
Q Consensus 239 l~~L~~L~i~~C~~L~~l 256 (293)
+++|++|+|++|++++.-
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 478888899999888654
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.96 E-value=0.012 Score=50.00 Aligned_cols=82 Identities=26% Similarity=0.258 Sum_probs=47.1
Q ss_pred CCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccccccc
Q 037794 124 FRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNA 203 (293)
Q Consensus 124 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 203 (293)
+.+.+.|+..||. +.+|.... .++.|+.|.++-. .++.+ .-++.|++|++|.++. +.|.++.+..-+..
T Consensus 18 l~~vkKLNcwg~~-L~DIsic~-----kMp~lEVLsLSvN-kIssL---~pl~rCtrLkElYLRk-N~I~sldEL~YLkn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISICE-----KMPLLEVLSLSVN-KISSL---APLQRCTRLKELYLRK-NCIESLDELEYLKN 86 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHHH-----hcccceeEEeecc-ccccc---hhHHHHHHHHHHHHHh-cccccHHHHHHHhc
Confidence 4566677777754 55554432 3467777777543 33322 2266778888888877 44544432222222
Q ss_pred ccccCCCCCCcccEEecCCCC
Q 037794 204 DKEHIGPLFPRLFILRLIDLP 224 (293)
Q Consensus 204 ~~~~~~~~f~~L~~L~l~~~~ 224 (293)
+ |+|++|.|..-|
T Consensus 87 -------l-psLr~LWL~ENP 99 (388)
T KOG2123|consen 87 -------L-PSLRTLWLDENP 99 (388)
T ss_pred -------C-chhhhHhhccCC
Confidence 4 777777776644
No 68
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=87.63 E-value=0.035 Score=53.31 Aligned_cols=109 Identities=21% Similarity=0.263 Sum_probs=61.3
Q ss_pred hhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccc
Q 037794 120 EMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLE 199 (293)
Q Consensus 120 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~ 199 (293)
.+.-++.++.|+++.. ++..+. + +..++.|+.|+|+++. +..+ |.-...++. |+.|.+++ +.++.+.+.+
T Consensus 182 SLqll~ale~LnLshN-k~~~v~--~---Lr~l~~LkhLDlsyN~-L~~v-p~l~~~gc~-L~~L~lrn-N~l~tL~gie 251 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHN-KFTKVD--N---LRRLPKLKHLDLSYNC-LRHV-PQLSMVGCK-LQLLNLRN-NALTTLRGIE 251 (1096)
T ss_pred HHHHHHHhhhhccchh-hhhhhH--H---HHhcccccccccccch-hccc-cccchhhhh-heeeeecc-cHHHhhhhHH
Confidence 3455688888888873 333322 1 4466889999998664 3322 432233343 88888888 5566553322
Q ss_pred ccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCC
Q 037794 200 ELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP 251 (293)
Q Consensus 200 ~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~ 251 (293)
. + .+|+.|++++- -+...... ..+..+..|+.|.+.|.|
T Consensus 252 ---~-------L-ksL~~LDlsyN-ll~~hseL-~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 252 ---N-------L-KSLYGLDLSYN-LLSEHSEL-EPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ---h-------h-hhhhccchhHh-hhhcchhh-hHHHHHHHHHHHhhcCCc
Confidence 2 3 66777777651 12221110 234555666666666654
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=85.22 E-value=0.097 Score=40.04 Aligned_cols=106 Identities=23% Similarity=0.179 Sum_probs=62.7
Q ss_pred CCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccc
Q 037794 125 RDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNAD 204 (293)
Q Consensus 125 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 204 (293)
..+..+++++|+ +.+++.-. ........|+..++++.. +++ ||....+.++..++|++.+ +.+.++|.. ...
T Consensus 27 kE~h~ldLssc~-lm~i~dav-y~l~~~~el~~i~ls~N~-fk~-fp~kft~kf~t~t~lNl~~-neisdvPeE--~Aa- 98 (177)
T KOG4579|consen 27 KELHFLDLSSCQ-LMYIADAV-YMLSKGYELTKISLSDNG-FKK-FPKKFTIKFPTATTLNLAN-NEISDVPEE--LAA- 98 (177)
T ss_pred HHhhhcccccch-hhHHHHHH-HHHhCCceEEEEecccch-hhh-CCHHHhhccchhhhhhcch-hhhhhchHH--Hhh-
Confidence 455667777775 34333211 122233667777887765 344 5887777777888888887 667777742 322
Q ss_pred cccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeec
Q 037794 205 KEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIEN 249 (293)
Q Consensus 205 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~ 249 (293)
+|.|+.|.++.-+ +...+ ..+..+.+|-.|+..+
T Consensus 99 -------m~aLr~lNl~~N~-l~~~p---~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 99 -------MPALRSLNLRFNP-LNAEP---RVIAPLIKLDMLDSPE 132 (177)
T ss_pred -------hHHhhhcccccCc-cccch---HHHHHHHhHHHhcCCC
Confidence 3888888887743 33322 3444455555555544
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=84.07 E-value=0.63 Score=42.69 Aligned_cols=104 Identities=20% Similarity=0.232 Sum_probs=64.1
Q ss_pred hccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccc
Q 037794 121 MIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEE 200 (293)
Q Consensus 121 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 200 (293)
...+.+|+.+.+.+ ..++.+... ..++++|+.|++++.. +.++ ..+..++.|+.|++.+ +.+..+....
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i~~~----l~~~~~L~~L~ls~N~-I~~i---~~l~~l~~L~~L~l~~-N~i~~~~~~~- 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKIENL----LSSLVNLQVLDLSFNK-ITKL---EGLSTLTLLKELNLSG-NLISDISGLE- 159 (414)
T ss_pred cccccceeeeeccc-cchhhcccc----hhhhhcchheeccccc-cccc---cchhhccchhhheecc-CcchhccCCc-
Confidence 46678888888877 334443310 3467888888887665 3332 1255567788888888 4455553211
Q ss_pred cccccccCCCCCCcccEEecCCCCCCceeccCCCc--cccCCCcceEeeecC
Q 037794 201 LNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGN--IIEMPMLWSLTIENC 250 (293)
Q Consensus 201 ~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~--~~~l~~L~~L~i~~C 250 (293)
. +++|+.+++.+. .++.+ .. +..+.+++.+.+.+.
T Consensus 160 --~--------l~~L~~l~l~~n-~i~~i----e~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 160 --S--------LKSLKLLDLSYN-RIVDI----ENDELSELISLEELDLGGN 196 (414)
T ss_pred --c--------chhhhcccCCcc-hhhhh----hhhhhhhccchHHHhccCC
Confidence 1 377777777774 44444 23 466777777777774
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=81.98 E-value=0.84 Score=41.88 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=14.0
Q ss_pred CCCcceEeEcCCCCccccccCccCCCCeeEEEecc
Q 037794 62 FPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSK 96 (293)
Q Consensus 62 ~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~ 96 (293)
++.|+.|++.++ .+..+ .++..+++|+.+.+++
T Consensus 139 l~~L~~L~l~~N-~i~~~-~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 139 LTLLKELNLSGN-LISDI-SGLESLKSLKLLDLSY 171 (414)
T ss_pred ccchhhheeccC-cchhc-cCCccchhhhcccCCc
Confidence 444555555543 23333 2223344455554443
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.90 E-value=0.11 Score=44.49 Aligned_cols=82 Identities=18% Similarity=0.270 Sum_probs=52.4
Q ss_pred CCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceecc
Q 037794 152 FNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCN 231 (293)
Q Consensus 152 l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~ 231 (293)
+.+.++|..|+|. +.++ ++...++.|+.|.++- ++++.+.. +. .+.+|++|.|.. +.+.++..
T Consensus 18 l~~vkKLNcwg~~-L~DI---sic~kMp~lEVLsLSv-NkIssL~p---l~--------rCtrLkElYLRk-N~I~sldE 80 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDI---SICEKMPLLEVLSLSV-NKISSLAP---LQ--------RCTRLKELYLRK-NCIESLDE 80 (388)
T ss_pred HHHhhhhcccCCC-ccHH---HHHHhcccceeEEeec-cccccchh---HH--------HHHHHHHHHHHh-cccccHHH
Confidence 5678899999996 5543 5678899999998875 45544421 11 237888888765 33444322
Q ss_pred CCCccccCCCcceEeeecCC
Q 037794 232 FTGNIIEMPMLWSLTIENCP 251 (293)
Q Consensus 232 ~~~~~~~l~~L~~L~i~~C~ 251 (293)
. ..+.++|+|+.|-|...|
T Consensus 81 L-~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 81 L-EYLKNLPSLRTLWLDENP 99 (388)
T ss_pred H-HHHhcCchhhhHhhccCC
Confidence 1 245677777777665544
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.33 E-value=1.6 Score=22.52 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=14.3
Q ss_pred CCCcceEeeecCCCcccccccc
Q 037794 239 MPMLWSLTIENCPDMETFISNS 260 (293)
Q Consensus 239 l~~L~~L~i~~C~~L~~l~p~~ 260 (293)
+++|++|+++++ +++.+ |.+
T Consensus 1 L~~L~~L~L~~N-~l~~l-p~~ 20 (26)
T smart00369 1 LPNLRELDLSNN-QLSSL-PPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcC-CHH
Confidence 357788888876 67777 654
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.33 E-value=1.6 Score=22.52 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=14.3
Q ss_pred CCCcceEeeecCCCcccccccc
Q 037794 239 MPMLWSLTIENCPDMETFISNS 260 (293)
Q Consensus 239 l~~L~~L~i~~C~~L~~l~p~~ 260 (293)
+++|++|+++++ +++.+ |.+
T Consensus 1 L~~L~~L~L~~N-~l~~l-p~~ 20 (26)
T smart00370 1 LPNLRELDLSNN-QLSSL-PPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcC-CHH
Confidence 357788888876 67777 654
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=72.57 E-value=0.4 Score=36.79 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=42.2
Q ss_pred hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcc
Q 037794 119 EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCD 190 (293)
Q Consensus 119 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~ 190 (293)
........|...++++ +.++.++..- ...|+.++.+.+.+.. +.++ |+. +..++.|+.|+++..+
T Consensus 47 y~l~~~~el~~i~ls~-N~fk~fp~kf---t~kf~t~t~lNl~~ne-isdv-PeE-~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSD-NGFKKFPKKF---TIKFPTATTLNLANNE-ISDV-PEE-LAAMPALRSLNLRFNP 111 (177)
T ss_pred HHHhCCceEEEEeccc-chhhhCCHHH---hhccchhhhhhcchhh-hhhc-hHH-HhhhHHhhhcccccCc
Confidence 3445566777778877 4455554322 2345678888886654 5554 777 6678889888888844
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=66.32 E-value=5.7 Score=34.24 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=27.5
Q ss_pred ccCCCcceEeEcCCCCcccccc----CccCCCCeeEEEeccc
Q 037794 60 LEFPSLERVFVTRCPNMKTFSQ----GIVSTPKLHEVQVSKK 97 (293)
Q Consensus 60 ~~~~~L~~L~i~~c~~l~~lp~----~~~~~~~L~~L~l~~c 97 (293)
-.||+|+..++++...=..+|. .+++.+.|++|.+.+|
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 4788999999988654333333 3567788999998877
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=55.50 E-value=12 Score=32.42 Aligned_cols=207 Identities=14% Similarity=0.101 Sum_probs=102.8
Q ss_pred ccccccccceeeccccccccccccc--cccccCCCcceEeEcCCCCcccc-----c---------cCccCCCCeeEEEec
Q 037794 32 NRIAFNELKFLELDDLPRLTSFCLE--NYTLEFPSLERVFVTRCPNMKTF-----S---------QGIVSTPKLHEVQVS 95 (293)
Q Consensus 32 ~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~~~L~~L~i~~c~~l~~l-----p---------~~~~~~~~L~~L~l~ 95 (293)
....||.|+..++++...-...+.. ..+.+-+.|++|.+.+| .+..+ . .-.+.-|.|+.+.+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 4446889999999887644434321 22346688999999997 34422 1 012345778877655
Q ss_pred cccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCC--CCcccCCCccEEEeccCCCCCcc--CC
Q 037794 96 KKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQA--LPVSFFNNLFKLVVDDCANMSSA--IP 171 (293)
Q Consensus 96 ~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~~~l~~L~~L~i~~c~~l~~~--~p 171 (293)
.. +-.|.........+....+|+.+.+... .+..-..... ......++|+.|++.+......- ..
T Consensus 166 rN----------Rlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 166 RN----------RLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cc----------hhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 21 0011111111223345568888888763 2332211000 11234588899999887654321 11
Q ss_pred hhHHhccCCCCeEEecCccccccccccccccc-ccccCCCCCCcccEEecCCCCC----CceeccCCCccccCCCcceEe
Q 037794 172 ANLLRCLSNLRWLEVRNCDSLEEVLHLEELNA-DKEHIGPLFPRLFILRLIDLPK----LKRFCNFTGNIIEMPMLWSLT 246 (293)
Q Consensus 172 ~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~-~~~~~~~~f~~L~~L~l~~~~~----l~~~~~~~~~~~~l~~L~~L~ 246 (293)
..++..-+.|++|.+.+|-.-. .|... ........+|+|..|...+-.- +..+.-..-.-..+|-|..|+
T Consensus 235 a~al~~W~~lrEL~lnDClls~-----~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le 309 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSN-----EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLE 309 (388)
T ss_pred HHHhcccchhhhccccchhhcc-----ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHH
Confidence 1223334567888888874210 11100 0011112347777776654211 111110001123566677777
Q ss_pred eecCCCcccc
Q 037794 247 IENCPDMETF 256 (293)
Q Consensus 247 i~~C~~L~~l 256 (293)
+.+. .++..
T Consensus 310 ~ngN-r~~E~ 318 (388)
T COG5238 310 RNGN-RIKEL 318 (388)
T ss_pred HccC-cchhH
Confidence 7764 45544
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=54.77 E-value=7.9 Score=19.38 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=8.7
Q ss_pred CCCcceEeeecCCCcc
Q 037794 239 MPMLWSLTIENCPDME 254 (293)
Q Consensus 239 l~~L~~L~i~~C~~L~ 254 (293)
+++|++|+|++|. +.
T Consensus 1 ~~~L~~L~l~~n~-i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-IT 15 (24)
T ss_dssp -TT-SEEE-TSSB-EH
T ss_pred CCCCCEEEccCCc-CC
Confidence 3678888888874 54
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=45.67 E-value=13 Score=19.54 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=13.4
Q ss_pred CCcceEeeecCCCccccccc
Q 037794 240 PMLWSLTIENCPDMETFISN 259 (293)
Q Consensus 240 ~~L~~L~i~~C~~L~~l~p~ 259 (293)
++|+.|++++. +|+++ |.
T Consensus 2 ~~L~~L~vs~N-~Lt~L-Pe 19 (26)
T smart00364 2 PSLKELNVSNN-QLTSL-PE 19 (26)
T ss_pred cccceeecCCC-ccccC-cc
Confidence 56788888875 68888 74
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=20.39 E-value=80 Score=16.43 Aligned_cols=15 Identities=20% Similarity=0.488 Sum_probs=7.8
Q ss_pred CCCCeEEecCcccccc
Q 037794 179 SNLRWLEVRNCDSLEE 194 (293)
Q Consensus 179 ~~L~~L~i~~c~~l~~ 194 (293)
++|+.|++++ ++++.
T Consensus 2 ~~L~~L~L~~-NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQ-NKIKK 16 (26)
T ss_pred CccCEEECCC-Cccce
Confidence 4556666665 34433
Done!