Query 037794
Match_columns 293
No_of_seqs 123 out of 1492
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:57:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 1.4E-18 4.7E-23 152.8 15.6 223 4-266 80-302 (328)
2 4fcg_A Uncharacterized protein 99.7 1.1E-17 3.7E-22 147.0 13.0 201 2-249 101-310 (328)
3 1ozn_A Reticulon 4 receptor; N 99.6 1.1E-14 3.9E-19 124.9 15.3 205 3-251 30-236 (285)
4 3t6q_A CD180 antigen; protein- 99.6 1.6E-14 5.6E-19 136.6 17.6 235 2-264 275-523 (606)
5 2xwt_C Thyrotropin receptor; s 99.6 7E-15 2.4E-19 123.0 13.3 182 38-256 32-220 (239)
6 3rgz_A Protein brassinosteroid 99.6 9E-15 3.1E-19 142.3 14.9 157 4-190 393-549 (768)
7 3vq2_A TLR4, TOLL-like recepto 99.6 8.9E-15 3E-19 138.4 14.3 217 2-264 304-543 (606)
8 2id5_A Lingo-1, leucine rich r 99.6 1E-13 3.4E-18 127.5 20.7 161 3-195 30-191 (477)
9 1ogq_A PGIP-2, polygalacturona 99.6 5.6E-15 1.9E-19 128.8 11.6 152 5-188 50-206 (313)
10 2z66_A Variable lymphocyte rec 99.6 1E-14 3.6E-19 126.4 13.0 157 3-189 26-185 (306)
11 3t6q_A CD180 antigen; protein- 99.6 3.2E-14 1.1E-18 134.6 17.0 236 1-264 297-546 (606)
12 4fmz_A Internalin; leucine ric 99.6 6.6E-14 2.3E-18 123.3 17.9 38 213-256 243-280 (347)
13 2ast_B S-phase kinase-associat 99.6 1.1E-15 3.8E-20 134.1 6.1 211 5-250 70-282 (336)
14 2ast_B S-phase kinase-associat 99.6 2.2E-15 7.6E-20 132.2 7.9 220 2-264 90-316 (336)
15 4fmz_A Internalin; leucine ric 99.6 7.3E-14 2.5E-18 123.1 17.6 211 2-256 85-302 (347)
16 3rgz_A Protein brassinosteroid 99.6 1.2E-14 4E-19 141.5 13.6 221 2-265 315-562 (768)
17 3zyi_A Leucine-rich repeat-con 99.6 8E-14 2.7E-18 127.5 18.3 206 4-256 74-281 (452)
18 2id5_A Lingo-1, leucine rich r 99.6 8.8E-14 3E-18 127.9 18.6 225 1-256 76-311 (477)
19 3zyj_A Leucine-rich repeat-con 99.6 4.8E-14 1.7E-18 128.5 16.5 153 4-189 63-217 (440)
20 1xku_A Decorin; proteoglycan, 99.6 8.9E-14 3E-18 121.8 17.6 216 4-256 51-278 (330)
21 3v47_A TOLL-like receptor 5B a 99.6 1E-13 3.4E-18 126.6 18.0 40 213-256 347-386 (455)
22 3zyj_A Leucine-rich repeat-con 99.6 1.1E-13 3.9E-18 126.0 18.2 204 2-251 85-290 (440)
23 3v47_A TOLL-like receptor 5B a 99.6 1.6E-13 5.5E-18 125.2 18.9 61 36-97 102-164 (455)
24 1p9a_G Platelet glycoprotein I 99.6 5.5E-14 1.9E-18 121.2 14.7 200 2-251 7-206 (290)
25 4eco_A Uncharacterized protein 99.6 2.1E-14 7.2E-19 136.9 12.3 63 32-97 201-283 (636)
26 3vq2_A TLR4, TOLL-like recepto 99.6 1.9E-14 6.6E-19 136.1 12.0 218 2-265 282-521 (606)
27 3zyi_A Leucine-rich repeat-con 99.5 2E-13 7E-18 124.8 18.1 205 1-251 95-301 (452)
28 1ogq_A PGIP-2, polygalacturona 99.5 2E-14 7E-19 125.2 9.8 213 2-260 73-287 (313)
29 3o6n_A APL1; leucine-rich repe 99.5 6E-13 2E-17 119.2 19.2 91 153-263 226-316 (390)
30 2z62_A TOLL-like receptor 4, v 99.5 1.4E-13 4.9E-18 117.4 13.9 214 5-264 28-253 (276)
31 4eco_A Uncharacterized protein 99.5 1.4E-14 4.7E-19 138.2 8.1 221 1-259 202-474 (636)
32 2z80_A TOLL-like receptor 2, v 99.5 3E-14 1E-18 126.0 9.7 167 5-189 52-232 (353)
33 2z66_A Variable lymphocyte rec 99.5 1.3E-13 4.6E-18 119.4 13.2 221 2-266 49-278 (306)
34 2xwt_C Thyrotropin receptor; s 99.5 1.8E-13 6.2E-18 114.4 13.1 203 5-253 31-239 (239)
35 2o6q_A Variable lymphocyte rec 99.5 6.4E-13 2.2E-17 113.2 16.1 198 6-251 17-216 (270)
36 2z63_A TOLL-like receptor 4, v 99.5 1.5E-13 5.1E-18 128.9 12.6 117 121-256 392-509 (570)
37 3o53_A Protein LRIM1, AGAP0063 99.5 1.4E-13 4.8E-18 120.0 11.5 201 4-261 33-233 (317)
38 4ecn_A Leucine-rich repeat pro 99.5 6.4E-14 2.2E-18 137.3 10.3 221 1-260 444-715 (876)
39 1xku_A Decorin; proteoglycan, 99.5 6.2E-13 2.1E-17 116.4 15.6 219 6-265 32-263 (330)
40 1h6u_A Internalin H; cell adhe 99.5 3.8E-13 1.3E-17 116.9 14.1 193 4-256 40-232 (308)
41 3oja_B Anopheles plasmodium-re 99.5 9.1E-13 3.1E-17 124.7 17.5 91 153-263 232-322 (597)
42 2z63_A TOLL-like receptor 4, v 99.5 1.9E-13 6.5E-18 128.2 12.2 181 36-251 346-529 (570)
43 3bz5_A Internalin-J, INLJ; leu 99.5 7.5E-13 2.6E-17 121.3 15.8 78 1-97 81-158 (457)
44 2z80_A TOLL-like receptor 2, v 99.5 5.1E-13 1.7E-17 118.2 14.1 224 2-256 73-316 (353)
45 3o6n_A APL1; leucine-rich repe 99.5 1.1E-12 3.9E-17 117.4 16.4 213 4-256 44-287 (390)
46 2ft3_A Biglycan; proteoglycan, 99.5 7.6E-13 2.6E-17 116.0 15.0 207 4-256 53-279 (332)
47 3rfs_A Internalin B, repeat mo 99.5 3.5E-13 1.2E-17 115.0 12.2 10 257-266 238-247 (272)
48 3oja_A Leucine-rich immune mol 99.5 3.9E-13 1.3E-17 124.2 12.9 203 4-263 33-235 (487)
49 4ecn_A Leucine-rich repeat pro 99.5 9.7E-13 3.3E-17 128.9 16.3 246 2-264 512-775 (876)
50 1o6v_A Internalin A; bacterial 99.5 1.7E-12 5.9E-17 119.1 16.8 209 3-256 66-280 (466)
51 2z81_A CD282 antigen, TOLL-lik 99.5 1.4E-13 4.7E-18 128.7 9.6 35 154-190 311-345 (549)
52 1ozn_A Reticulon 4 receptor; N 99.5 1.1E-12 3.8E-17 112.4 14.3 184 1-224 52-236 (285)
53 1wwl_A Monocyte differentiatio 99.4 4.3E-13 1.5E-17 116.7 11.5 16 240-256 274-289 (312)
54 1ziw_A TOLL-like receptor 3; i 99.4 3.7E-12 1.3E-16 122.1 18.3 37 61-97 327-363 (680)
55 3oja_B Anopheles plasmodium-re 99.4 2.1E-12 7.3E-17 122.1 16.4 90 149-256 250-339 (597)
56 2ft3_A Biglycan; proteoglycan, 99.4 1E-12 3.5E-17 115.2 13.3 218 6-265 34-264 (332)
57 1o6v_A Internalin A; bacterial 99.4 3.6E-12 1.2E-16 117.0 17.2 196 2-256 87-302 (466)
58 1ziw_A TOLL-like receptor 3; i 99.4 1.4E-12 4.8E-17 125.0 14.5 212 5-256 381-599 (680)
59 3bz5_A Internalin-J, INLJ; leu 99.4 1.2E-12 4.1E-17 120.0 13.4 79 1-97 102-180 (457)
60 3j0a_A TOLL-like receptor 5; m 99.4 7.9E-12 2.7E-16 122.9 19.6 91 150-256 287-377 (844)
61 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 4.3E-12 1.5E-16 119.1 16.5 126 122-260 350-491 (562)
62 1wwl_A Monocyte differentiatio 99.4 7.3E-14 2.5E-18 121.6 3.0 214 39-284 65-299 (312)
63 2z7x_B TOLL-like receptor 1, v 99.4 5.6E-12 1.9E-16 117.0 15.6 157 61-251 322-479 (520)
64 4ay9_X Follicle-stimulating ho 99.4 6.4E-12 2.2E-16 111.0 15.2 214 4-249 29-255 (350)
65 2z7x_B TOLL-like receptor 1, v 99.4 7.1E-12 2.4E-16 116.3 16.1 83 2-97 42-125 (520)
66 4ay9_X Follicle-stimulating ho 99.4 5.1E-12 1.7E-16 111.7 14.1 197 17-259 20-219 (350)
67 3rfs_A Internalin B, repeat mo 99.4 5.9E-12 2E-16 107.3 13.7 177 35-251 39-216 (272)
68 3o53_A Protein LRIM1, AGAP0063 99.4 9.4E-13 3.2E-17 114.8 8.1 195 2-254 55-250 (317)
69 1p9a_G Platelet glycoprotein I 99.4 9.7E-12 3.3E-16 107.1 14.0 186 35-264 8-194 (290)
70 4glp_A Monocyte differentiatio 99.4 3.2E-12 1.1E-16 111.0 10.5 187 36-256 90-287 (310)
71 3j0a_A TOLL-like receptor 5; m 99.3 3.6E-11 1.2E-15 118.2 18.4 135 4-164 23-159 (844)
72 3oja_A Leucine-rich immune mol 99.3 2.5E-11 8.5E-16 112.1 15.0 197 1-254 54-250 (487)
73 4ezg_A Putative uncharacterize 99.3 6.4E-12 2.2E-16 101.9 9.8 150 61-250 42-191 (197)
74 2o6q_A Variable lymphocyte rec 99.3 3.7E-11 1.3E-15 102.2 14.8 179 4-224 36-216 (270)
75 3m19_A Variable lymphocyte rec 99.3 4.5E-11 1.5E-15 100.6 14.4 174 38-251 15-190 (251)
76 4ezg_A Putative uncharacterize 99.3 2.3E-11 7.9E-16 98.5 11.9 150 35-223 42-191 (197)
77 2z62_A TOLL-like receptor 4, v 99.3 3.9E-11 1.3E-15 102.3 13.4 185 36-259 27-217 (276)
78 1h6u_A Internalin H; cell adhe 99.3 6.2E-11 2.1E-15 102.9 14.7 172 35-256 39-210 (308)
79 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 7.2E-11 2.4E-15 110.8 16.1 157 60-251 350-508 (562)
80 2z81_A CD282 antigen, TOLL-lik 99.3 1.9E-11 6.4E-16 114.1 12.0 156 4-188 25-181 (549)
81 3g06_A SSPH2 (leucine-rich rep 99.3 5.6E-11 1.9E-15 112.6 15.3 51 5-73 61-111 (622)
82 1jl5_A Outer protein YOPM; leu 99.3 9.7E-12 3.3E-16 113.8 9.7 79 4-97 10-101 (454)
83 3g06_A SSPH2 (leucine-rich rep 99.3 1.1E-10 3.9E-15 110.5 17.0 205 6-260 41-259 (622)
84 1jl5_A Outer protein YOPM; leu 99.3 1.3E-11 4.4E-16 113.0 9.6 57 121-189 149-205 (454)
85 3m19_A Variable lymphocyte rec 99.2 9.4E-11 3.2E-15 98.6 13.3 174 6-224 15-190 (251)
86 2p1m_B Transport inhibitor res 99.2 5.1E-12 1.7E-16 119.0 4.6 38 151-189 287-324 (594)
87 1h6t_A Internalin B; cell adhe 99.2 1.8E-10 6.3E-15 99.1 13.7 172 35-256 44-215 (291)
88 3ogk_B Coronatine-insensitive 99.2 6.7E-12 2.3E-16 118.2 3.7 92 152-255 435-527 (592)
89 2p1m_B Transport inhibitor res 99.2 6.2E-12 2.1E-16 118.4 3.4 37 213-252 456-493 (594)
90 3cvr_A Invasion plasmid antige 99.2 1.6E-10 5.4E-15 108.4 12.8 196 6-266 60-255 (571)
91 3ogk_B Coronatine-insensitive 99.1 2.1E-11 7.1E-16 114.8 5.2 91 152-255 292-392 (592)
92 4g8a_A TOLL-like receptor 4; l 99.1 6.8E-10 2.3E-14 104.9 15.3 195 36-249 370-576 (635)
93 1h6t_A Internalin B; cell adhe 99.1 2.7E-10 9.2E-15 98.0 10.9 166 4-223 45-210 (291)
94 4g8a_A TOLL-like receptor 4; l 99.1 5.5E-10 1.9E-14 105.5 13.8 159 36-224 419-578 (635)
95 4glp_A Monocyte differentiatio 99.1 1.1E-10 3.9E-15 101.1 8.4 197 61-284 89-297 (310)
96 1m9s_A Internalin B; cell inva 99.1 3.6E-10 1.2E-14 106.9 12.4 166 36-250 42-207 (605)
97 2ca6_A RAN GTPase-activating p 99.1 2.6E-11 8.9E-16 108.4 3.6 91 3-97 30-132 (386)
98 1m9s_A Internalin B; cell inva 99.1 5.6E-10 1.9E-14 105.5 11.8 168 3-224 41-208 (605)
99 2ca6_A RAN GTPase-activating p 99.1 2.1E-11 7.1E-16 109.1 1.2 226 2-256 57-318 (386)
100 2o6s_A Variable lymphocyte rec 99.1 8.2E-10 2.8E-14 90.0 10.4 168 62-272 27-196 (208)
101 1xeu_A Internalin C; cellular 99.0 1E-09 3.6E-14 92.9 9.5 165 36-250 18-182 (263)
102 3e6j_A Variable lymphocyte rec 99.0 2.6E-09 9E-14 88.5 11.7 108 123-250 62-169 (229)
103 2v9t_B SLIT homolog 2 protein 99.0 5.3E-09 1.8E-13 86.1 12.5 33 63-96 32-65 (220)
104 3sb4_A Hypothetical leucine ri 99.0 1.9E-08 6.4E-13 87.9 15.9 56 36-95 100-156 (329)
105 2ell_A Acidic leucine-rich nuc 99.0 3E-09 1E-13 83.6 9.8 99 149-261 67-166 (168)
106 2v70_A SLIT-2, SLIT homolog 2 99.0 5.8E-09 2E-13 85.9 11.8 129 37-188 32-162 (220)
107 2v70_A SLIT-2, SLIT homolog 2 98.9 1.2E-08 4E-13 84.0 13.0 110 122-250 54-163 (220)
108 2o6s_A Variable lymphocyte rec 98.9 3.5E-09 1.2E-13 86.2 9.6 131 36-190 27-159 (208)
109 1z7x_W Ribonuclease inhibitor; 98.9 1E-09 3.4E-14 100.1 6.1 233 4-250 27-294 (461)
110 2ell_A Acidic leucine-rich nuc 98.9 1.3E-09 4.4E-14 85.7 5.9 136 36-196 23-163 (168)
111 1z7x_W Ribonuclease inhibitor; 98.9 1.4E-10 4.9E-15 105.7 0.0 235 4-256 141-413 (461)
112 1xeu_A Internalin C; cellular 98.9 6.5E-09 2.2E-13 88.0 10.3 143 36-223 40-182 (263)
113 2xot_A Amphoterin-induced prot 98.9 1.2E-08 4.1E-13 90.3 11.5 137 36-196 38-179 (361)
114 3goz_A Leucine-rich repeat-con 98.9 8.7E-10 3E-14 97.7 4.1 221 3-251 20-264 (362)
115 2v9t_B SLIT homolog 2 protein 98.9 1.4E-08 4.7E-13 83.6 11.0 129 36-188 31-161 (220)
116 2je0_A Acidic leucine-rich nuc 98.8 9.1E-09 3.1E-13 79.1 7.5 58 36-97 16-74 (149)
117 2xot_A Amphoterin-induced prot 98.8 1.7E-08 5.8E-13 89.4 10.1 174 40-250 21-199 (361)
118 2je0_A Acidic leucine-rich nuc 98.8 2.6E-09 8.7E-14 82.2 4.0 82 3-97 15-98 (149)
119 3e6j_A Variable lymphocyte rec 98.8 3.5E-08 1.2E-12 81.7 10.9 129 62-223 39-169 (229)
120 3goz_A Leucine-rich repeat-con 98.8 1.2E-09 4.2E-14 96.8 1.8 223 3-255 48-298 (362)
121 3cvr_A Invasion plasmid antige 98.8 9.4E-08 3.2E-12 89.6 13.7 165 38-266 60-231 (571)
122 1dce_A Protein (RAB geranylger 98.7 2.2E-09 7.5E-14 100.8 1.7 201 2-246 346-566 (567)
123 3e4g_A ATP synthase subunit S, 98.7 3.7E-09 1.3E-13 83.5 2.2 95 153-256 61-155 (176)
124 1dce_A Protein (RAB geranylger 98.7 1.1E-09 3.6E-14 102.9 -2.4 116 125-265 441-556 (567)
125 1a9n_A U2A', U2A'; complex (nu 98.7 9.3E-08 3.2E-12 75.6 9.0 108 126-251 43-151 (176)
126 1w8a_A SLIT protein; signaling 98.6 2.4E-07 8.3E-12 74.4 9.8 62 122-189 75-136 (192)
127 1a9n_A U2A', U2A'; complex (nu 98.6 8.5E-08 2.9E-12 75.8 7.0 129 36-189 18-150 (176)
128 2wfh_A SLIT homolog 2 protein 98.5 8.1E-07 2.8E-11 71.4 10.3 61 122-188 51-111 (193)
129 2wfh_A SLIT homolog 2 protein 98.5 6E-07 2.1E-11 72.2 9.4 106 62-189 30-136 (193)
130 4fdw_A Leucine rich hypothetic 98.5 4.6E-06 1.6E-10 74.8 16.2 76 6-95 136-211 (401)
131 3e4g_A ATP synthase subunit S, 98.5 1.1E-07 3.9E-12 74.9 4.7 39 154-193 115-153 (176)
132 3sb4_A Hypothetical leucine ri 98.5 5.1E-07 1.7E-11 78.7 9.0 87 152-256 225-312 (329)
133 2o6r_A Variable lymphocyte rec 98.4 1.5E-06 5.2E-11 68.5 9.9 108 125-251 28-135 (177)
134 4fdw_A Leucine rich hypothetic 98.4 1.2E-05 4.1E-10 72.1 16.6 53 38-96 136-189 (401)
135 1w8a_A SLIT protein; signaling 98.4 1.6E-06 5.3E-11 69.6 9.7 106 38-164 30-137 (192)
136 2o6r_A Variable lymphocyte rec 98.4 2.2E-06 7.6E-11 67.5 9.9 61 123-189 74-134 (177)
137 4b8c_D Glucose-repressible alc 98.4 4.6E-07 1.6E-11 87.5 6.9 110 122-255 221-330 (727)
138 1ds9_A Outer arm dynein; leuci 98.2 1.1E-08 3.7E-13 82.7 -6.8 107 59-190 44-151 (198)
139 4b8c_D Glucose-repressible alc 98.2 1.4E-06 4.9E-11 84.0 6.4 107 36-166 223-329 (727)
140 4fs7_A Uncharacterized protein 98.2 5.3E-05 1.8E-09 67.5 16.2 30 248-277 363-393 (394)
141 2ra8_A Uncharacterized protein 98.2 2.7E-06 9.1E-11 75.3 7.3 60 35-97 137-203 (362)
142 2ra8_A Uncharacterized protein 98.1 7.2E-07 2.5E-11 78.9 2.4 168 59-254 135-320 (362)
143 2r9u_A Variable lymphocyte rec 98.1 3.2E-05 1.1E-09 60.8 10.3 96 153-265 33-128 (174)
144 3g39_A Variable lymphocyte rec 98.0 3.4E-05 1.2E-09 60.4 9.7 102 127-250 11-112 (170)
145 1ds9_A Outer arm dynein; leuci 98.0 1.7E-07 5.7E-12 75.6 -4.3 127 64-224 24-151 (198)
146 2r9u_A Variable lymphocyte rec 98.0 1.8E-05 6.3E-10 62.2 7.7 61 122-188 54-114 (174)
147 3g39_A Variable lymphocyte rec 98.0 1.7E-05 5.9E-10 62.1 7.4 61 122-188 51-111 (170)
148 2ifg_A High affinity nerve gro 97.7 9.2E-05 3.1E-09 64.6 8.0 93 114-223 21-113 (347)
149 3un9_A NLR family member X1; l 97.7 8.5E-06 2.9E-10 72.3 1.2 37 152-189 182-221 (372)
150 4gt6_A Cell surface protein; l 97.7 0.0024 8.1E-08 56.7 17.2 31 213-247 311-341 (394)
151 2ifg_A High affinity nerve gro 97.7 0.0001 3.4E-09 64.4 7.9 37 60-96 28-65 (347)
152 4gt6_A Cell surface protein; l 97.5 0.0053 1.8E-07 54.4 16.2 104 123-249 263-366 (394)
153 3un9_A NLR family member X1; l 97.4 1.6E-05 5.5E-10 70.5 -1.5 168 61-256 70-254 (372)
154 4h09_A Hypothetical leucine ri 97.4 0.013 4.3E-07 51.5 17.3 51 213-266 286-349 (379)
155 4fs7_A Uncharacterized protein 97.3 0.0052 1.8E-07 54.5 14.8 30 248-277 340-371 (394)
156 4h09_A Hypothetical leucine ri 97.2 0.042 1.4E-06 48.1 18.5 61 213-277 263-338 (379)
157 1io0_A Tropomodulin; LRR prote 96.1 0.0047 1.6E-07 48.7 4.1 117 61-189 34-161 (185)
158 1io0_A Tropomodulin; LRR prote 94.6 0.019 6.4E-07 45.2 2.9 118 35-164 34-162 (185)
159 3rw6_A Nuclear RNA export fact 94.6 0.039 1.3E-06 46.2 5.0 41 152-195 169-211 (267)
160 3rw6_A Nuclear RNA export fact 93.7 0.054 1.8E-06 45.4 4.0 65 176-254 167-233 (267)
161 3rfe_A Platelet glycoprotein I 84.3 1.3 4.5E-05 32.3 4.6 34 213-249 31-64 (130)
162 3rfe_A Platelet glycoprotein I 75.5 3.5 0.00012 29.9 4.4 35 153-189 31-65 (130)
163 2lz0_A Uncharacterized protein 33.2 19 0.00065 24.7 1.7 10 247-256 39-48 (100)
164 1pgv_A TMD-1, tropomodulin TMD 27.5 59 0.002 25.3 3.9 65 61-135 39-108 (197)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=1.4e-18 Score=152.79 Aligned_cols=223 Identities=17% Similarity=0.222 Sum_probs=166.8
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI 83 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~ 83 (293)
.+++++|+++++ .++.+|..... +++|++|+++++. +..++.. ...+++|+.|+++++ .++.+|..+
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~--------l~~L~~L~L~~n~-l~~lp~~--~~~l~~L~~L~Ls~n-~l~~lp~~l 146 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFR--------LSHLQHMTIDAAG-LMELPDT--MQQFAGLETLTLARN-PLRALPASI 146 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGG--------GTTCSEEEEESSC-CCCCCSC--GGGGTTCSEEEEESC-CCCCCCGGG
T ss_pred ccceeEEEccCC-CchhcChhhhh--------CCCCCEEECCCCC-ccchhHH--HhccCCCCEEECCCC-ccccCcHHH
Confidence 478999999986 66777764433 8999999999875 4466643 568999999999997 566888889
Q ss_pred cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794 84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC 163 (293)
Q Consensus 84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c 163 (293)
..+++|+.|++++|....... ..... ..+...+..+++|+.|+++++. ++.++. .+..+++|++|++++|
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p-~~~~~----~~~~~~~~~l~~L~~L~L~~n~-l~~lp~----~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELP-EPLAS----TDASGEHQGLVNLQSLRLEWTG-IRSLPA----SIANLQNLKSLKIRNS 216 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCC-SCSEE----EC-CCCEEESTTCCEEEEEEEC-CCCCCG----GGGGCTTCCEEEEESS
T ss_pred hcCcCCCEEECCCCCCccccC-hhHhh----ccchhhhccCCCCCEEECcCCC-cCcchH----hhcCCCCCCEEEccCC
Confidence 999999999999872111110 00000 0011123458999999999863 555442 1567899999999998
Q ss_pred CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcc
Q 037794 164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLW 243 (293)
Q Consensus 164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~ 243 (293)
... . +|.. +..+++|++|++.+|.....++. .+. .+++|++|++.+|..+..++ ..+..+++|+
T Consensus 217 ~l~-~-l~~~-l~~l~~L~~L~Ls~n~~~~~~p~--~~~--------~l~~L~~L~L~~n~~~~~~p---~~~~~l~~L~ 280 (328)
T 4fcg_A 217 PLS-A-LGPA-IHHLPKLEELDLRGCTALRNYPP--IFG--------GRAPLKRLILKDCSNLLTLP---LDIHRLTQLE 280 (328)
T ss_dssp CCC-C-CCGG-GGGCTTCCEEECTTCTTCCBCCC--CTT--------CCCCCCEEECTTCTTCCBCC---TTGGGCTTCC
T ss_pred CCC-c-Cchh-hccCCCCCEEECcCCcchhhhHH--Hhc--------CCCCCCEEECCCCCchhhcc---hhhhcCCCCC
Confidence 755 3 3654 78899999999999887766652 222 24999999999998887765 5688999999
Q ss_pred eEeeecCCCccccccccchhhcc
Q 037794 244 SLTIENCPDMETFISNSVLHVTT 266 (293)
Q Consensus 244 ~L~i~~C~~L~~l~p~~l~~l~~ 266 (293)
+|++++|+.++.+ |.+++.+..
T Consensus 281 ~L~L~~n~~~~~i-P~~l~~L~~ 302 (328)
T 4fcg_A 281 KLDLRGCVNLSRL-PSLIAQLPA 302 (328)
T ss_dssp EEECTTCTTCCCC-CGGGGGSCT
T ss_pred EEeCCCCCchhhc-cHHHhhccC
Confidence 9999999988888 999988876
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=1.1e-17 Score=147.04 Aligned_cols=201 Identities=16% Similarity=0.292 Sum_probs=159.2
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ 81 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~ 81 (293)
+.+++|++|+++++ .+..+|...+. +++|++|+++++. +..++.. ...+++|+.|++++|..++.+|.
T Consensus 101 ~~l~~L~~L~L~~n-~l~~lp~~~~~--------l~~L~~L~Ls~n~-l~~lp~~--l~~l~~L~~L~L~~n~~~~~~p~ 168 (328)
T 4fcg_A 101 FRLSHLQHMTIDAA-GLMELPDTMQQ--------FAGLETLTLARNP-LRALPAS--IASLNRLRELSIRACPELTELPE 168 (328)
T ss_dssp GGGTTCSEEEEESS-CCCCCCSCGGG--------GTTCSEEEEESCC-CCCCCGG--GGGCTTCCEEEEEEETTCCCCCS
T ss_pred hhCCCCCEEECCCC-CccchhHHHhc--------cCCCCEEECCCCc-cccCcHH--HhcCcCCCEEECCCCCCccccCh
Confidence 46789999999997 55577764443 9999999999974 4566554 66899999999999998888887
Q ss_pred CccC---------CCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccC
Q 037794 82 GIVS---------TPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFF 152 (293)
Q Consensus 82 ~~~~---------~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 152 (293)
.+.. +++|+.|+++++ .+..++..+..+++|+.|+++++. +..++. .+..+
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n---------------~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~----~l~~l 228 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWT---------------GIRSLPASIANLQNLKSLKIRNSP-LSALGP----AIHHL 228 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEE---------------CCCCCCGGGGGCTTCCEEEEESSC-CCCCCG----GGGGC
T ss_pred hHhhccchhhhccCCCCCEEECcCC---------------CcCcchHhhcCCCCCCEEEccCCC-CCcCch----hhccC
Confidence 6654 899999999976 222455566789999999999965 554432 15678
Q ss_pred CCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794 153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF 232 (293)
Q Consensus 153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~ 232 (293)
++|++|++++|.....+ |.. +.++++|++|++.+|.....++. .+.. + ++|++|++++|+.+..++
T Consensus 229 ~~L~~L~Ls~n~~~~~~-p~~-~~~l~~L~~L~L~~n~~~~~~p~--~~~~-------l-~~L~~L~L~~n~~~~~iP-- 294 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNY-PPI-FGGRAPLKRLILKDCSNLLTLPL--DIHR-------L-TQLEKLDLRGCVNLSRLP-- 294 (328)
T ss_dssp TTCCEEECTTCTTCCBC-CCC-TTCCCCCCEEECTTCTTCCBCCT--TGGG-------C-TTCCEEECTTCTTCCCCC--
T ss_pred CCCCEEECcCCcchhhh-HHH-hcCCCCCCEEECCCCCchhhcch--hhhc-------C-CCCCEEeCCCCCchhhcc--
Confidence 99999999999888764 654 78899999999999988777763 2222 4 999999999999888876
Q ss_pred CCccccCCCcceEeeec
Q 037794 233 TGNIIEMPMLWSLTIEN 249 (293)
Q Consensus 233 ~~~~~~l~~L~~L~i~~ 249 (293)
..+..+++|+.+.+..
T Consensus 295 -~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 295 -SLIAQLPANCIILVPP 310 (328)
T ss_dssp -GGGGGSCTTCEEECCG
T ss_pred -HHHhhccCceEEeCCH
Confidence 6788999999998775
No 3
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.61 E-value=1.1e-14 Score=124.93 Aligned_cols=205 Identities=18% Similarity=0.201 Sum_probs=139.4
Q ss_pred CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-cc
Q 037794 3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQ 81 (293)
Q Consensus 3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~ 81 (293)
..++|++|+++++ .++.++... ...+++|++|+++++. +..+... ....+++|++|+++++..++.+ |.
T Consensus 30 ~~~~l~~L~l~~n-~i~~~~~~~-------~~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 30 IPAASQRIFLHGN-RISHVPAAS-------FRACRNLTILWLHSNV-LARIDAA-AFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp CCTTCSEEECTTS-CCCEECTTT-------TTTCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CCCCceEEEeeCC-cCCccCHHH-------cccCCCCCEEECCCCc-cceeCHh-hcCCccCCCEEeCCCCCCccccCHH
Confidence 4568888888886 566666432 1238889999998763 4444322 2457889999999988767766 55
Q ss_pred CccCCCCeeEEEeccccccccccccCccchhhhhhh-hhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEe
Q 037794 82 GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKR-YEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVV 160 (293)
Q Consensus 82 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i 160 (293)
.+..+++|+.|.++++. +..+ +..+..+++|++|+++++. ++.++... +..+++|++|++
T Consensus 100 ~~~~l~~L~~L~l~~n~---------------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l 160 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCG---------------LQELGPGLFRGLAALQYLYLQDNA-LQALPDDT---FRDLGNLTHLFL 160 (285)
T ss_dssp TTTTCTTCCEEECTTSC---------------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEEC
T ss_pred HhcCCcCCCEEECCCCc---------------CCEECHhHhhCCcCCCEEECCCCc-ccccCHhH---hccCCCccEEEC
Confidence 67788899999988761 1111 2234668899999998854 55444333 456788999999
Q ss_pred ccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCC
Q 037794 161 DDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMP 240 (293)
Q Consensus 161 ~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~ 240 (293)
+++. +..+ +...+.++++|++|++.++. ++.+.. ..+. .+++|++|++.++ .++.++. ..+..++
T Consensus 161 ~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~--------~l~~L~~L~l~~n-~l~~~~~--~~~~~l~ 225 (285)
T 1ozn_A 161 HGNR-ISSV-PERAFRGLHSLDRLLLHQNR-VAHVHP-HAFR--------DLGRLMTLYLFAN-NLSALPT--EALAPLR 225 (285)
T ss_dssp CSSC-CCEE-CTTTTTTCTTCCEEECCSSC-CCEECT-TTTT--------TCTTCCEEECCSS-CCSCCCH--HHHTTCT
T ss_pred CCCc-cccc-CHHHhcCccccCEEECCCCc-ccccCH-hHcc--------CcccccEeeCCCC-cCCcCCH--HHcccCc
Confidence 8875 4443 55557788999999999853 444421 2222 2388999999885 5666543 4467889
Q ss_pred CcceEeeecCC
Q 037794 241 MLWSLTIENCP 251 (293)
Q Consensus 241 ~L~~L~i~~C~ 251 (293)
+|++|++++++
T Consensus 226 ~L~~L~l~~N~ 236 (285)
T 1ozn_A 226 ALQYLRLNDNP 236 (285)
T ss_dssp TCCEEECCSSC
T ss_pred ccCEEeccCCC
Confidence 99999998864
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.61 E-value=1.6e-14 Score=136.58 Aligned_cols=235 Identities=17% Similarity=0.188 Sum_probs=121.6
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ 81 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~ 81 (293)
+.+++|++|+++++ .++.+|..... +++|++|+++++.. ...+.. ....+++|+.|++++|.....+|.
T Consensus 275 ~~l~~L~~L~l~~n-~l~~lp~~l~~--------l~~L~~L~l~~n~l-~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 275 HCFSGLQELDLTAT-HLSELPSGLVG--------LSTLKKLVLSANKF-ENLCQI-SASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp TTCTTCSEEECTTS-CCSCCCSSCCS--------CTTCCEEECTTCCC-SBGGGG-CGGGCTTCSEEECCSCSSCCBCCS
T ss_pred ccccCCCEEeccCC-ccCCCChhhcc--------cccCCEEECccCCc-CcCchh-hhhccCcCCEEECCCCCcccccch
Confidence 45677888888776 55566654332 67777777777642 233221 144667777777777654434443
Q ss_pred C-ccCCCCeeEEEeccccccccc----cccCc------cc--hhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCC
Q 037794 82 G-IVSTPKLHEVQVSKKEEDELH----HWEGN------KL--NSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALP 148 (293)
Q Consensus 82 ~-~~~~~~L~~L~l~~c~~~~~~----~~~~~------~~--~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 148 (293)
. +..+++|+.|+++++.-.... .+.+. ++ +......+..+..+++|+.|+++++. +...... ..
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~--~~ 420 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQ--SP 420 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC-EECCTTC--CT
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc-CCCcccc--hh
Confidence 3 556677777777665111000 00000 00 00000111223345555555555532 2211100 01
Q ss_pred cccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccc-cccccccccccccCCCCCCcccEEecCCCCCCc
Q 037794 149 VSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEE-VLHLEELNADKEHIGPLFPRLFILRLIDLPKLK 227 (293)
Q Consensus 149 ~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~-i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~ 227 (293)
+..+++|++|++++|.... . +...+.++++|++|++.++.--.. ++....+. .+++|++|+++++ .++
T Consensus 421 ~~~l~~L~~L~l~~n~l~~-~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--------~l~~L~~L~Ls~n-~l~ 489 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDI-S-SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ--------TLGRLEILVLSFC-DLS 489 (606)
T ss_dssp TTTCTTCCEEECTTCCCBT-T-CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG--------GCTTCCEEECTTS-CCC
T ss_pred hhCcccCCEEECCCCccCC-c-CHHHHhCCCCCCEEECCCCCCCccccccchhhc--------cCCCccEEECCCC-ccC
Confidence 3445666666666665332 2 223355666777777766432111 11101111 2378888888886 566
Q ss_pred eeccCCCccccCCCcceEeeecCCCccccccccchhh
Q 037794 228 RFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHV 264 (293)
Q Consensus 228 ~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l 264 (293)
.+.. ..+..+++|++|++++| +++...|..++.+
T Consensus 490 ~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l 523 (606)
T 3t6q_A 490 SIDQ--HAFTSLKMMNHVDLSHN-RLTSSSIEALSHL 523 (606)
T ss_dssp EECT--TTTTTCTTCCEEECCSS-CCCGGGGGGGTTC
T ss_pred ccCh--hhhccccCCCEEECCCC-ccCcCChhHhCcc
Confidence 5543 56677888888888887 5766645555544
No 5
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=7e-15 Score=123.05 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=89.2
Q ss_pred ccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc-CccCCCCeeEEEeccccccccccccCccchhhhhh
Q 037794 38 ELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ-GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQK 116 (293)
Q Consensus 38 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~ 116 (293)
+|+.|+++++. ++.++.. ....+++|+.|+++++..++.++. .+..+++|+.|++++| ..+..
T Consensus 32 ~l~~L~l~~n~-l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~--------------n~l~~ 95 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT--------------RNLTY 95 (239)
T ss_dssp TCCEEEEESCC-CSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEE--------------TTCCE
T ss_pred cccEEEEeCCc-ceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCC--------------CCeeE
Confidence 56666665542 3333332 133456666666666544554443 3455566666666542 11111
Q ss_pred hh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCcc---EEEeccCCCCCccCChhHHhccCCCC-eEEecCccc
Q 037794 117 RY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLF---KLVVDDCANMSSAIPANLLRCLSNLR-WLEVRNCDS 191 (293)
Q Consensus 117 l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~---~L~i~~c~~l~~~~p~~~~~~l~~L~-~L~i~~c~~ 191 (293)
+. ..+..+++|+.|+++++. ++.++. +..+++|+ +|+++++..++.+ +...+.++++|+ +|++.+ ..
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~-l~~lp~-----~~~l~~L~~L~~L~l~~N~~l~~i-~~~~~~~l~~L~~~L~l~~-n~ 167 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTG-LKMFPD-----LTKVYSTDIFFILEITDNPYMTSI-PVNAFQGLCNETLTLKLYN-NG 167 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEEC-CCSCCC-----CTTCCBCCSEEEEEEESCTTCCEE-CTTTTTTTBSSEEEEECCS-CC
T ss_pred cCHHHhCCCCCCCEEeCCCCC-Cccccc-----cccccccccccEEECCCCcchhhc-CcccccchhcceeEEEcCC-CC
Confidence 11 122345566666665532 332221 22334444 6666666444443 444455566666 666665 33
Q ss_pred ccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccC-CCcceEeeecCCCcccc
Q 037794 192 LEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEM-PMLWSLTIENCPDMETF 256 (293)
Q Consensus 192 l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l-~~L~~L~i~~C~~L~~l 256 (293)
++.++. .... . ++|++|++.++..++.++. ..+..+ ++|++|+++++ +++.+
T Consensus 168 l~~i~~--~~~~-------~-~~L~~L~L~~n~~l~~i~~--~~~~~l~~~L~~L~l~~N-~l~~l 220 (239)
T 2xwt_C 168 FTSVQG--YAFN-------G-TKLDAVYLNKNKYLTVIDK--DAFGGVYSGPSLLDVSQT-SVTAL 220 (239)
T ss_dssp CCEECT--TTTT-------T-CEEEEEECTTCTTCCEECT--TTTTTCSBCCSEEECTTC-CCCCC
T ss_pred CcccCH--hhcC-------C-CCCCEEEcCCCCCcccCCH--HHhhccccCCcEEECCCC-ccccC
Confidence 444431 1001 2 4566666666545655543 344555 66666666664 46555
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=9e-15 Score=142.34 Aligned_cols=157 Identities=16% Similarity=0.080 Sum_probs=100.0
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI 83 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~ 83 (293)
+++|++|++++|.....+|..... +++|++|+++++..-...+.. ...+++|+.|++++|.....+|..+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~~ 462 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSN--------CSELVSLHLSFNYLSGTIPSS--LGSLSKLRDLKLWLNMLEGEIPQEL 462 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGG--------CTTCCEEECCSSEEESCCCGG--GGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCCccEEECCCCccccccCHHHhc--------CCCCCEEECcCCcccCcccHH--HhcCCCCCEEECCCCcccCcCCHHH
Confidence 678999999988555455543333 788888888887543334433 4567888888888876555677777
Q ss_pred cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794 84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC 163 (293)
Q Consensus 84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c 163 (293)
..+++|+.|++++| ...+.++..+..+++|+.|+++++.-...++ .. +..+++|++|++++|
T Consensus 463 ~~l~~L~~L~L~~N--------------~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~---~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 463 MYVKTLETLILDFN--------------DLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KW---IGRLENLAILKLSNN 524 (768)
T ss_dssp GGCTTCCEEECCSS--------------CCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-GG---GGGCTTCCEEECCSS
T ss_pred cCCCCceEEEecCC--------------cccCcCCHHHhcCCCCCEEEccCCccCCcCC-hH---HhcCCCCCEEECCCC
Confidence 77788888888766 1112233445667777777777755322222 11 445677777777777
Q ss_pred CCCCccCChhHHhccCCCCeEEecCcc
Q 037794 164 ANMSSAIPANLLRCLSNLRWLEVRNCD 190 (293)
Q Consensus 164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~ 190 (293)
..... +|.. +..+++|+.|++.+|+
T Consensus 525 ~l~~~-~p~~-l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 525 SFSGN-IPAE-LGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCEEE-CCGG-GGGCTTCCEEECCSSE
T ss_pred cccCc-CCHH-HcCCCCCCEEECCCCc
Confidence 55443 2543 6667777777777654
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.60 E-value=8.9e-15 Score=138.40 Aligned_cols=217 Identities=16% Similarity=0.144 Sum_probs=111.3
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccc----------------------ccc
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLE----------------------NYT 59 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----------------------~~~ 59 (293)
+.+++|++|++++|.. +.+|.. . +++|+.|+++++......+.. ...
T Consensus 304 ~~~~~L~~L~l~~n~l-~~lp~~--~--------l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 372 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQL-KQFPTL--D--------LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372 (606)
T ss_dssp CTTCCCSEEEEESCCC-SSCCCC--C--------CSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHH
T ss_pred cccccCCEEEcccccC-cccccC--C--------CCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhh
Confidence 4567788888888744 555522 1 555555555554333222111 112
Q ss_pred ccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCc
Q 037794 60 LEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRL 138 (293)
Q Consensus 60 ~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l 138 (293)
..+++|+.|++++|. +..+|..+..+++|+.|.++++. .....+ ..+..+++|+.|+++++. +
T Consensus 373 ~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~--------------l~~~~~~~~~~~l~~L~~L~l~~n~-l 436 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHST--------------LKRVTEFSAFLSLEKLLYLDISYTN-T 436 (606)
T ss_dssp HCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSE--------------EESTTTTTTTTTCTTCCEEECTTSC-C
T ss_pred ccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCc--------------cCCccChhhhhccccCCEEECcCCC-C
Confidence 244555555555442 34444444555555555555440 000111 233456677777776654 3
Q ss_pred eEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEE
Q 037794 139 KEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFIL 218 (293)
Q Consensus 139 ~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L 218 (293)
....... +..+++|++|++++|......+|. .+..+++|++|++.+| .++.++. ..+. .+++|++|
T Consensus 437 ~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~--------~l~~L~~L 502 (606)
T 3vq2_A 437 KIDFDGI---FLGLTSLNTLKMAGNSFKDNTLSN-VFANTTNLTFLDLSKC-QLEQISW-GVFD--------TLHRLQLL 502 (606)
T ss_dssp EECCTTT---TTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTS-CCCEECT-TTTT--------TCTTCCEE
T ss_pred Cccchhh---hcCCCCCCEEECCCCcCCCcchHH-hhccCCCCCEEECCCC-cCCccCh-hhhc--------ccccCCEE
Confidence 3322222 445566777777666543322232 3556677777777764 3333321 1111 23777777
Q ss_pred ecCCCCCCceeccCCCccccCCCcceEeeecCCCccccccccchhh
Q 037794 219 RLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHV 264 (293)
Q Consensus 219 ~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l 264 (293)
+++++ .++.+.. ..+..+++|++|++++| +++.+ |.++..+
T Consensus 503 ~Ls~N-~l~~~~~--~~~~~l~~L~~L~l~~N-~l~~~-p~~~~~l 543 (606)
T 3vq2_A 503 NMSHN-NLLFLDS--SHYNQLYSLSTLDCSFN-RIETS-KGILQHF 543 (606)
T ss_dssp ECCSS-CCSCEEG--GGTTTCTTCCEEECTTS-CCCCE-ESCGGGS
T ss_pred ECCCC-cCCCcCH--HHccCCCcCCEEECCCC-cCccc-CHhHhhh
Confidence 77775 4544422 45666777777777776 47766 6544433
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.59 E-value=1e-13 Score=127.52 Aligned_cols=161 Identities=19% Similarity=0.256 Sum_probs=107.9
Q ss_pred CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC
Q 037794 3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG 82 (293)
Q Consensus 3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~ 82 (293)
..+++++|+++++ .++.++... ...+++|++|+++++. +..+... ...++++|+.|+++++ .++.+|..
T Consensus 30 ~~~~l~~L~L~~n-~l~~~~~~~-------~~~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~ 98 (477)
T 2id5_A 30 IPTETRLLDLGKN-RIKTLNQDE-------FASFPHLEELELNENI-VSAVEPG-AFNNLFNLRTLGLRSN-RLKLIPLG 98 (477)
T ss_dssp CCTTCSEEECCSS-CCCEECTTT-------TTTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSS-CCCSCCTT
T ss_pred CCCCCcEEECCCC-ccceECHhH-------ccCCCCCCEEECCCCc-cCEeChh-hhhCCccCCEEECCCC-cCCccCcc
Confidence 3467889999886 566665432 2238899999998873 4444322 2457889999999886 46666653
Q ss_pred -ccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEec
Q 037794 83 -IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVD 161 (293)
Q Consensus 83 -~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~ 161 (293)
+..+++|+.|+++++ .........+..+++|+.|+++++. +..+.... +..+++|++|+++
T Consensus 99 ~~~~l~~L~~L~Ls~n--------------~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~ 160 (477)
T 2id5_A 99 VFTGLSNLTKLDISEN--------------KIVILLDYMFQDLYNLKSLEVGDND-LVYISHRA---FSGLNSLEQLTLE 160 (477)
T ss_dssp SSTTCTTCCEEECTTS--------------CCCEECTTTTTTCTTCCEEEECCTT-CCEECTTS---STTCTTCCEEEEE
T ss_pred cccCCCCCCEEECCCC--------------ccccCChhHccccccCCEEECCCCc-cceeChhh---ccCCCCCCEEECC
Confidence 577899999999876 1111112234667888888888743 55555444 5567888888888
Q ss_pred cCCCCCccCChhHHhccCCCCeEEecCccccccc
Q 037794 162 DCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEV 195 (293)
Q Consensus 162 ~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i 195 (293)
+|. +.. ++...+..+++|+.|++.++ .+..+
T Consensus 161 ~n~-l~~-~~~~~l~~l~~L~~L~l~~n-~i~~~ 191 (477)
T 2id5_A 161 KCN-LTS-IPTEALSHLHGLIVLRLRHL-NINAI 191 (477)
T ss_dssp SCC-CSS-CCHHHHTTCTTCCEEEEESC-CCCEE
T ss_pred CCc-Ccc-cChhHhcccCCCcEEeCCCC-cCcEe
Confidence 875 344 36666778888888888874 34443
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.59 E-value=5.6e-15 Score=128.80 Aligned_cols=152 Identities=12% Similarity=0.155 Sum_probs=81.5
Q ss_pred CCcceEeccccccce--Eeccccccccccccccccccceeecccccccc-ccccccccccCCCcceEeEcCCCCcccccc
Q 037794 5 NSLVNLNVSYCEKIE--EIIGHVGEEAKENRIAFNELKFLELDDLPRLT-SFCLENYTLEFPSLERVFVTRCPNMKTFSQ 81 (293)
Q Consensus 5 ~~L~~L~l~~c~~l~--~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~ 81 (293)
.++++|+++++.--. .++.... .+++|++|+++++..+. .++.. ...+++|++|+++++.-...+|.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~--------~l~~L~~L~L~~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA--------NLPYLNFLYIGGINNLVGPIPPA--IAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG--------GCTTCSEEEEEEETTEESCCCGG--GGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCCCCccCCcccChhHh--------CCCCCCeeeCCCCCcccccCChh--HhcCCCCCEEECcCCeeCCcCCH
Confidence 467778887764333 4554333 37778888877533333 33332 45677788888777643336666
Q ss_pred CccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCce-EeccCCCCCcccCC-CccEEE
Q 037794 82 GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLK-EIWHGQALPVSFFN-NLFKLV 159 (293)
Q Consensus 82 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~-~L~~L~ 159 (293)
.+..+++|+.|+++++ .....++..+..+++|++|+++++. +. .++. . +..++ +|++|+
T Consensus 120 ~~~~l~~L~~L~Ls~N--------------~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~-~---l~~l~~~L~~L~ 180 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYN--------------ALSGTLPPSISSLPNLVGITFDGNR-ISGAIPD-S---YGSFSKLFTSMT 180 (313)
T ss_dssp GGGGCTTCCEEECCSS--------------EEESCCCGGGGGCTTCCEEECCSSC-CEEECCG-G---GGCCCTTCCEEE
T ss_pred HHhCCCCCCEEeCCCC--------------ccCCcCChHHhcCCCCCeEECcCCc-ccCcCCH-H---HhhhhhcCcEEE
Confidence 6677777777777765 1111233334556666666666643 33 2221 1 22333 556666
Q ss_pred eccCCCCCccCChhHHhccCCCCeEEecC
Q 037794 160 VDDCANMSSAIPANLLRCLSNLRWLEVRN 188 (293)
Q Consensus 160 i~~c~~l~~~~p~~~~~~l~~L~~L~i~~ 188 (293)
++++..... +|.. +..++ |+.|++.+
T Consensus 181 L~~N~l~~~-~~~~-~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 181 ISRNRLTGK-IPPT-FANLN-LAFVDLSR 206 (313)
T ss_dssp CCSSEEEEE-CCGG-GGGCC-CSEEECCS
T ss_pred CcCCeeecc-CChH-HhCCc-ccEEECcC
Confidence 655543222 2332 33343 55555555
No 10
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.59 E-value=1e-14 Score=126.39 Aligned_cols=157 Identities=18% Similarity=0.249 Sum_probs=86.1
Q ss_pred CCCCcceEeccccccceEeccccccccccccccccccceeecccccccccccc-ccccccCCCcceEeEcCCCCcccccc
Q 037794 3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCL-ENYTLEFPSLERVFVTRCPNMKTFSQ 81 (293)
Q Consensus 3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~i~~c~~l~~lp~ 81 (293)
..++|++|+++++ .++.++...- ..+++|++|+++++. +..... ......+++|+.|+++++ .+..+|.
T Consensus 26 ~~~~l~~L~L~~n-~l~~i~~~~~-------~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~ 95 (306)
T 2z66_A 26 IPSSATRLELESN-KLQSLPHGVF-------DKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSS 95 (306)
T ss_dssp CCTTCCEEECCSS-CCCCCCTTTT-------TTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEE
T ss_pred CCCCCCEEECCCC-ccCccCHhHh-------hccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccChh
Confidence 3467888888886 5666665321 137888888887763 222210 111335788888888876 4556666
Q ss_pred CccCCCCeeEEEeccccccccccccCccchhhhhhhh--hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEE
Q 037794 82 GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY--EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLV 159 (293)
Q Consensus 82 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 159 (293)
.+..+++|+.|+++++. +..+. ..+..+++|+.|+++++. +..+.... +..+++|++|+
T Consensus 96 ~~~~l~~L~~L~l~~n~---------------l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~ 156 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSN---------------LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGI---FNGLSSLEVLK 156 (306)
T ss_dssp EEETCTTCCEEECTTSE---------------EESSTTTTTTTTCTTCCEEECTTSC-CEECSTTT---TTTCTTCCEEE
T ss_pred hcCCCCCCCEEECCCCc---------------ccccccchhhhhccCCCEEECCCCc-CCccchhh---cccCcCCCEEE
Confidence 67778888888887651 11111 123445566666666543 33222222 33445566666
Q ss_pred eccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794 160 VDDCANMSSAIPANLLRCLSNLRWLEVRNC 189 (293)
Q Consensus 160 i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c 189 (293)
++++......+|. .+..+++|++|+++++
T Consensus 157 l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 157 MAGNSFQENFLPD-IFTELRNLTFLDLSQC 185 (306)
T ss_dssp CTTCEEGGGEECS-CCTTCTTCCEEECTTS
T ss_pred CCCCccccccchh-HHhhCcCCCEEECCCC
Confidence 6555432212222 2444555666666553
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.59 E-value=3.2e-14 Score=134.56 Aligned_cols=236 Identities=14% Similarity=0.103 Sum_probs=138.4
Q ss_pred CCCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-
Q 037794 1 VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF- 79 (293)
Q Consensus 1 ~g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l- 79 (293)
++.+++|++|+++++ .+..++... ...+++|+.|+++++.....++.. ....+++|++|+++++.-....
T Consensus 297 l~~l~~L~~L~l~~n-~l~~~~~~~-------~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~ 367 (606)
T 3t6q_A 297 LVGLSTLKKLVLSAN-KFENLCQIS-------ASNFPSLTHLSIKGNTKRLELGTG-CLENLENLRELDLSHDDIETSDC 367 (606)
T ss_dssp CCSCTTCCEEECTTC-CCSBGGGGC-------GGGCTTCSEEECCSCSSCCBCCSS-TTTTCTTCCEEECCSSCCCEEEE
T ss_pred hcccccCCEEECccC-CcCcCchhh-------hhccCcCCEEECCCCCcccccchh-hhhccCcCCEEECCCCccccccC
Confidence 356788999999887 444443321 122667777777666433233322 1335566666666665322211
Q ss_pred -ccCccCCCCeeEEEecccccccc--ccccCc------cc--hhhhhhhh-hhhccCCCccEEEecCCCCceEeccCCCC
Q 037794 80 -SQGIVSTPKLHEVQVSKKEEDEL--HHWEGN------KL--NSTIQKRY-EEMIGFRDIERLQLSHFPRLKEIWHGQAL 147 (293)
Q Consensus 80 -p~~~~~~~~L~~L~l~~c~~~~~--~~~~~~------~~--~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 147 (293)
+..+..+++|+.|+++++.-... ..+... ++ +......+ ..+..+++|+.|+++++. +.......
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-- 444 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQL-- 444 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTT--
T ss_pred cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHHH--
Confidence 34445566666666665521100 000000 00 00001111 124678999999999965 44332222
Q ss_pred CcccCCCccEEEeccCCCCCccCCh-hHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCC
Q 037794 148 PVSFFNNLFKLVVDDCANMSSAIPA-NLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKL 226 (293)
Q Consensus 148 ~~~~l~~L~~L~i~~c~~l~~~~p~-~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l 226 (293)
+..+++|++|++++|......++. ..+..+++|+.|++.+| .++.++. ..+. .+++|++|+++++ .+
T Consensus 445 -~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~--------~l~~L~~L~Ls~N-~l 512 (606)
T 3t6q_A 445 -FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQ-HAFT--------SLKMMNHVDLSHN-RL 512 (606)
T ss_dssp -TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECT-TTTT--------TCTTCCEEECCSS-CC
T ss_pred -HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccCh-hhhc--------cccCCCEEECCCC-cc
Confidence 557899999999999755422222 35788999999999996 4544431 2222 2499999999996 56
Q ss_pred ceeccCCCccccCCCcceEeeecCCCccccccccchhh
Q 037794 227 KRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHV 264 (293)
Q Consensus 227 ~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l 264 (293)
+.+.. ..+..+++| +|++++| +++.+.|..++.+
T Consensus 513 ~~~~~--~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l 546 (606)
T 3t6q_A 513 TSSSI--EALSHLKGI-YLNLASN-HISIILPSLLPIL 546 (606)
T ss_dssp CGGGG--GGGTTCCSC-EEECCSS-CCCCCCGGGHHHH
T ss_pred CcCCh--hHhCccccc-EEECcCC-cccccCHhhcccC
Confidence 55433 677889999 9999998 6877745445544
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.58 E-value=6.6e-14 Score=123.35 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=24.4
Q ss_pred CcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794 213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
++|++|++.++ .++.+ ..+..+++|++|++++| +++.+
T Consensus 243 ~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~l~~n-~l~~~ 280 (347)
T 4fmz_A 243 SQLTWLEIGTN-QISDI----NAVKDLTKLKMLNVGSN-QISDI 280 (347)
T ss_dssp TTCCEEECCSS-CCCCC----GGGTTCTTCCEEECCSS-CCCCC
T ss_pred CCCCEEECCCC-ccCCC----hhHhcCCCcCEEEccCC-ccCCC
Confidence 67777777665 45444 34566777777777776 56655
No 13
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=1.1e-15 Score=134.10 Aligned_cols=211 Identities=13% Similarity=0.110 Sum_probs=122.3
Q ss_pred CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCcc
Q 037794 5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIV 84 (293)
Q Consensus 5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~ 84 (293)
+++++|+++++ .+...+... ..+++|++|+++++. +...........+++|++|++++|.--...+..+.
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~--------~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~ 139 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEH--------FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSC--------CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT
T ss_pred ccceEEEcCCc-cccccchhh--------ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh
Confidence 67778888775 333333221 237788888888775 33211111244678888888888743324555566
Q ss_pred CCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCC-CccEEEeccC
Q 037794 85 STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFN-NLFKLVVDDC 163 (293)
Q Consensus 85 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~-~L~~L~i~~c 163 (293)
.+++|+.|++++|... ....+...+..+++|++|++++|..++..... .....++ +|++|++++|
T Consensus 140 ~~~~L~~L~L~~~~~l------------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGF------------SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--VAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TCTTCSEEECTTCBSC------------CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH--HHHHHSCTTCCEEECCSC
T ss_pred cCCCCCEEECCCCCCC------------CHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH--HHHHhcccCCCEEEeCCC
Confidence 7888888888876100 00123334456778888888877555532100 0033456 7888888877
Q ss_pred C-CCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCc
Q 037794 164 A-NMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPML 242 (293)
Q Consensus 164 ~-~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L 242 (293)
. .+.+......+..+++|++|++.+|..++...- ..+.. . ++|++|++.+|..+..... ..+..+++|
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~l~~-------l-~~L~~L~l~~~~~~~~~~~--~~l~~~~~L 274 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQ-------L-NYLQHLSLSRCYDIIPETL--LELGEIPTL 274 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-GGGGG-------C-TTCCEEECTTCTTCCGGGG--GGGGGCTTC
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-HHHhC-------C-CCCCEeeCCCCCCCCHHHH--HHHhcCCCC
Confidence 5 343111223456678888888888765443211 12212 3 7788888887764443211 245667788
Q ss_pred ceEeeecC
Q 037794 243 WSLTIENC 250 (293)
Q Consensus 243 ~~L~i~~C 250 (293)
++|++++|
T Consensus 275 ~~L~l~~~ 282 (336)
T 2ast_B 275 KTLQVFGI 282 (336)
T ss_dssp CEEECTTS
T ss_pred CEEeccCc
Confidence 88888877
No 14
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=2.2e-15 Score=132.17 Aligned_cols=220 Identities=19% Similarity=0.185 Sum_probs=130.2
Q ss_pred CCCCCcceEeccccccceE--eccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcc--
Q 037794 2 GIPNSLVNLNVSYCEKIEE--IIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMK-- 77 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~--i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~-- 77 (293)
..+++|++|++++|. +.. ++.. ...+++|++|+++++..-...+.. ...+++|++|++++|..++
T Consensus 90 ~~~~~L~~L~L~~~~-l~~~~~~~~--------~~~~~~L~~L~L~~~~l~~~~~~~--l~~~~~L~~L~L~~~~~l~~~ 158 (336)
T 2ast_B 90 FSPFRVQHMDLSNSV-IEVSTLHGI--------LSQCSKLQNLSLEGLRLSDPIVNT--LAKNSNLVRLNLSGCSGFSEF 158 (336)
T ss_dssp CCCBCCCEEECTTCE-ECHHHHHHH--------HTTBCCCSEEECTTCBCCHHHHHH--HTTCTTCSEEECTTCBSCCHH
T ss_pred ccCCCCCEEEccCCC-cCHHHHHHH--------HhhCCCCCEEeCcCcccCHHHHHH--HhcCCCCCEEECCCCCCCCHH
Confidence 346788888888874 322 2221 123788888888887422222221 3457888888888886666
Q ss_pred ccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCC-CccEEEecCCC-CceEeccCCCCCcccCCCc
Q 037794 78 TFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFR-DIERLQLSHFP-RLKEIWHGQALPVSFFNNL 155 (293)
Q Consensus 78 ~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~-~l~~~~~~~~~~~~~l~~L 155 (293)
.++..+..+++|+.|.+++|... ....+...+..++ +|++|++++|. .++..... .....+++|
T Consensus 159 ~l~~~~~~~~~L~~L~l~~~~~l------------~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~--~~~~~~~~L 224 (336)
T 2ast_B 159 ALQTLLSSCSRLDELNLSWCFDF------------TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS--TLVRRCPNL 224 (336)
T ss_dssp HHHHHHHHCTTCCEEECCCCTTC------------CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH--HHHHHCTTC
T ss_pred HHHHHHhcCCCCCEEcCCCCCCc------------ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH--HHHhhCCCC
Confidence 35655667888888888876111 0112334456677 88888888874 23311100 013456888
Q ss_pred cEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCc
Q 037794 156 FKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGN 235 (293)
Q Consensus 156 ~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~ 235 (293)
++|++++|..+.+..+. .+.++++|++|++.+|..+....- ..+. .+++|++|++.+| +.+ ..
T Consensus 225 ~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~l~--------~~~~L~~L~l~~~--i~~-----~~ 287 (336)
T 2ast_B 225 VHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETL-LELG--------EIPTLKTLQVFGI--VPD-----GT 287 (336)
T ss_dssp SEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGG-GGGG--------GCTTCCEEECTTS--SCT-----TC
T ss_pred CEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHH-HHHh--------cCCCCCEEeccCc--cCH-----HH
Confidence 88888888765543343 366788888888888764433210 1111 2388888888887 322 23
Q ss_pred cccC-CCcceEeeecCCCccccccccchhh
Q 037794 236 IIEM-PMLWSLTIENCPDMETFISNSVLHV 264 (293)
Q Consensus 236 ~~~l-~~L~~L~i~~C~~L~~l~p~~l~~l 264 (293)
+..+ ..++.|++++ .+++...|...+.-
T Consensus 288 ~~~l~~~l~~L~l~~-n~l~~~~~~~~~~~ 316 (336)
T 2ast_B 288 LQLLKEALPHLQINC-SHFTTIARPTIGNK 316 (336)
T ss_dssp HHHHHHHSTTSEESC-CCSCCTTCSSCSST
T ss_pred HHHHHhhCcceEEec-ccCccccCCccccc
Confidence 3333 2366666754 46777766666554
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.58 E-value=7.3e-14 Score=123.08 Aligned_cols=211 Identities=16% Similarity=0.216 Sum_probs=119.1
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ 81 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~ 81 (293)
+.+++|++|++++| .++.++. ...+++|++|+++++. +..++. ...+++|+.|++++|..+..++.
T Consensus 85 ~~l~~L~~L~L~~n-~i~~~~~---------~~~l~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~ 150 (347)
T 4fmz_A 85 SNLVKLTNLYIGTN-KITDISA---------LQNLTNLRELYLNEDN-ISDISP---LANLTKMYSLNLGANHNLSDLSP 150 (347)
T ss_dssp TTCTTCCEEECCSS-CCCCCGG---------GTTCTTCSEEECTTSC-CCCCGG---GTTCTTCCEEECTTCTTCCCCGG
T ss_pred hcCCcCCEEEccCC-cccCchH---------HcCCCcCCEEECcCCc-ccCchh---hccCCceeEEECCCCCCcccccc
Confidence 56889999999987 5665542 2237888888888764 333433 34678888888888776665533
Q ss_pred CccCCCCeeEEEeccccccccccccCc------cch-hhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCC
Q 037794 82 GIVSTPKLHEVQVSKKEEDELHHWEGN------KLN-STIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNN 154 (293)
Q Consensus 82 ~~~~~~~L~~L~l~~c~~~~~~~~~~~------~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~ 154 (293)
+..+++|+.|.+.+|.-.....+... ++. ..+..+.. +..+++|+.+.++++. +..+. ++..+++
T Consensus 151 -~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-----~~~~~~~ 222 (347)
T 4fmz_A 151 -LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ-ITDIT-----PVANMTR 222 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCG-----GGGGCTT
T ss_pred -hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCC-CCCCc-----hhhcCCc
Confidence 56777788888777621110000000 000 00011111 2344555555554432 22111 1345567
Q ss_pred ccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCC
Q 037794 155 LFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTG 234 (293)
Q Consensus 155 L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~ 234 (293)
|++|++++|.... . +. +..+++|++|++.+| .++.+. .. ..+++|++|++.++ .++++ .
T Consensus 223 L~~L~l~~n~l~~-~-~~--~~~l~~L~~L~l~~n-~l~~~~---~~--------~~l~~L~~L~l~~n-~l~~~----~ 281 (347)
T 4fmz_A 223 LNSLKIGNNKITD-L-SP--LANLSQLTWLEIGTN-QISDIN---AV--------KDLTKLKMLNVGSN-QISDI----S 281 (347)
T ss_dssp CCEEECCSSCCCC-C-GG--GTTCTTCCEEECCSS-CCCCCG---GG--------TTCTTCCEEECCSS-CCCCC----G
T ss_pred CCEEEccCCccCC-C-cc--hhcCCCCCEEECCCC-ccCCCh---hH--------hcCCCcCEEEccCC-ccCCC----h
Confidence 7777777665332 2 22 566777777777764 333332 11 12378888888876 56554 3
Q ss_pred ccccCCCcceEeeecCCCcccc
Q 037794 235 NIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 235 ~~~~l~~L~~L~i~~C~~L~~l 256 (293)
.+..+++|++|++++| +++..
T Consensus 282 ~~~~l~~L~~L~L~~n-~l~~~ 302 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNN-QLGNE 302 (347)
T ss_dssp GGGGCTTCSEEECCSS-CCCGG
T ss_pred hhcCCCCCCEEECcCC-cCCCc
Confidence 4667788888888887 46555
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.58 E-value=1.2e-14 Score=141.51 Aligned_cols=221 Identities=15% Similarity=0.112 Sum_probs=130.8
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeecccccccccccccccccc--------------------
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLE-------------------- 61 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-------------------- 61 (293)
+.+++|++|++++|.....++... ...+++|++|+++++.....++.. ...
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~-------l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~~L~~L~Ls~N~l~~~~~ 385 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDT-------LLKMRGLKVLDLSFNEFSGELPES--LTNLSASLLTLDLSSNNFSGPIL 385 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHH-------HTTCTTCCEEECCSSEEEECCCTT--HHHHTTTCSEEECCSSEEEEECC
T ss_pred hcCCCccEEECCCCcccCcCCHHH-------HhcCCCCCEEeCcCCccCccccHH--HHhhhcCCcEEEccCCCcCCCcC
Confidence 467888888888875444666431 112666777766665432223222 122
Q ss_pred -------CCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecC
Q 037794 62 -------FPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSH 134 (293)
Q Consensus 62 -------~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 134 (293)
+++|++|++.+|.....+|..+..+++|+.|++++| ...+..+..+..+++|+.|++++
T Consensus 386 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N--------------~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN--------------YLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS--------------EEESCCCGGGGGCTTCCEEECCS
T ss_pred hhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC--------------cccCcccHHHhcCCCCCEEECCC
Confidence 345555555554333344555555555555555544 11123334456677888888877
Q ss_pred CCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCc
Q 037794 135 FPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPR 214 (293)
Q Consensus 135 ~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~ 214 (293)
+.-...++ .. +..+++|++|++++|..... +|.. +.++++|+.|++.+|.-...++ ..+.. +++
T Consensus 452 n~l~~~~p-~~---~~~l~~L~~L~L~~N~l~~~-~p~~-l~~l~~L~~L~L~~N~l~~~~p--~~~~~--------l~~ 515 (768)
T 3rgz_A 452 NMLEGEIP-QE---LMYVKTLETLILDFNDLTGE-IPSG-LSNCTNLNWISLSNNRLTGEIP--KWIGR--------LEN 515 (768)
T ss_dssp SCCCSCCC-GG---GGGCTTCCEEECCSSCCCSC-CCGG-GGGCTTCCEEECCSSCCCSCCC--GGGGG--------CTT
T ss_pred CcccCcCC-HH---HcCCCCceEEEecCCcccCc-CCHH-HhcCCCCCEEEccCCccCCcCC--hHHhc--------CCC
Confidence 65322222 11 45668888888888765544 3544 7778888888888865333333 22222 388
Q ss_pred ccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCccccccccchhhc
Q 037794 215 LFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVT 265 (293)
Q Consensus 215 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~ 265 (293)
|++|++.++.-...++ ..+..+++|+.|++++|+--..+ |.++....
T Consensus 516 L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~g~i-p~~~~~~~ 562 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIP---AELGDCRSLIWLDLNTNLFNGTI-PAAMFKQS 562 (768)
T ss_dssp CCEEECCSSCCEEECC---GGGGGCTTCCEEECCSSEEESBC-CGGGGTTT
T ss_pred CCEEECCCCcccCcCC---HHHcCCCCCCEEECCCCccCCcC-ChHHhccc
Confidence 9999999874333433 67788999999999998533355 87776543
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.58 E-value=8e-14 Score=127.48 Aligned_cols=206 Identities=17% Similarity=0.187 Sum_probs=116.7
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC-
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG- 82 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~- 82 (293)
.+++++|+++++ .++.++... ...+++|+.|+++++. +..+... ...++++|+.|+++++ .++.+|..
T Consensus 74 ~~~l~~L~L~~n-~i~~~~~~~-------~~~l~~L~~L~Ls~n~-i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~ 142 (452)
T 3zyi_A 74 PSNTRYLNLMEN-NIQMIQADT-------FRHLHHLEVLQLGRNS-IRQIEVG-AFNGLASLNTLELFDN-WLTVIPSGA 142 (452)
T ss_dssp CTTCSEEECCSS-CCCEECTTT-------TTTCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSS-CCSBCCTTT
T ss_pred CCCccEEECcCC-cCceECHHH-------cCCCCCCCEEECCCCc-cCCcChh-hccCcccCCEEECCCC-cCCccChhh
Confidence 457888888886 566655432 2237888888888763 4444332 2446788888888886 46655543
Q ss_pred ccCCCCeeEEEeccccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEec
Q 037794 83 IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVD 161 (293)
Q Consensus 83 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~ 161 (293)
+..+++|+.|+++++. +..++ ..+..+++|+.|+++++..++.++.+. +..+++|++|+++
T Consensus 143 ~~~l~~L~~L~L~~N~---------------l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~---~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNP---------------IESIPSYAFNRVPSLMRLDLGELKKLEYISEGA---FEGLFNLKYLNLG 204 (452)
T ss_dssp SSSCTTCCEEECCSCC---------------CCEECTTTTTTCTTCCEEECCCCTTCCEECTTT---TTTCTTCCEEECT
T ss_pred hcccCCCCEEECCCCC---------------cceeCHhHHhcCCcccEEeCCCCCCccccChhh---ccCCCCCCEEECC
Confidence 5678888888888651 11111 123556777777777777677666544 4456667777776
Q ss_pred cCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCC
Q 037794 162 DCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPM 241 (293)
Q Consensus 162 ~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~ 241 (293)
+|.. ..+ |. +..+++|++|++.++ .++.+.. ..+. .+++|++|++.++ .++.+.. ..+..+++
T Consensus 205 ~n~l-~~~-~~--~~~l~~L~~L~Ls~N-~l~~~~~-~~~~--------~l~~L~~L~L~~n-~l~~~~~--~~~~~l~~ 267 (452)
T 3zyi_A 205 MCNI-KDM-PN--LTPLVGLEELEMSGN-HFPEIRP-GSFH--------GLSSLKKLWVMNS-QVSLIER--NAFDGLAS 267 (452)
T ss_dssp TSCC-SSC-CC--CTTCTTCCEEECTTS-CCSEECG-GGGT--------TCTTCCEEECTTS-CCCEECT--TTTTTCTT
T ss_pred CCcc-ccc-cc--ccccccccEEECcCC-cCcccCc-cccc--------CccCCCEEEeCCC-cCceECH--HHhcCCCC
Confidence 6643 222 32 455666666666663 3333321 1111 1255555555553 3444322 33444555
Q ss_pred cceEeeecCCCcccc
Q 037794 242 LWSLTIENCPDMETF 256 (293)
Q Consensus 242 L~~L~i~~C~~L~~l 256 (293)
|++|+++++ +++.+
T Consensus 268 L~~L~L~~N-~l~~~ 281 (452)
T 3zyi_A 268 LVELNLAHN-NLSSL 281 (452)
T ss_dssp CCEEECCSS-CCSCC
T ss_pred CCEEECCCC-cCCcc
Confidence 555555554 44444
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.58 E-value=8.8e-14 Score=127.91 Aligned_cols=225 Identities=16% Similarity=0.137 Sum_probs=131.0
Q ss_pred CCCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794 1 VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS 80 (293)
Q Consensus 1 ~g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp 80 (293)
++++++|++|+++++ .++.++...- ..+++|++|+++++.. ..+... ....+++|+.|++.++.--...+
T Consensus 76 ~~~l~~L~~L~L~~n-~l~~~~~~~~-------~~l~~L~~L~Ls~n~i-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~ 145 (477)
T 2id5_A 76 FNNLFNLRTLGLRSN-RLKLIPLGVF-------TGLSNLTKLDISENKI-VILLDY-MFQDLYNLKSLEVGDNDLVYISH 145 (477)
T ss_dssp TTTCTTCCEEECCSS-CCCSCCTTSS-------TTCTTCCEEECTTSCC-CEECTT-TTTTCTTCCEEEECCTTCCEECT
T ss_pred hhCCccCCEEECCCC-cCCccCcccc-------cCCCCCCEEECCCCcc-ccCChh-HccccccCCEEECCCCccceeCh
Confidence 357889999999886 5666665321 1278888888887643 323221 14467788888887754322334
Q ss_pred cCccCCCCeeEEEecccccccccc---ccCc------cch-hhhhhh-hhhhccCCCccEEEecCCCCceEeccCCCCCc
Q 037794 81 QGIVSTPKLHEVQVSKKEEDELHH---WEGN------KLN-STIQKR-YEEMIGFRDIERLQLSHFPRLKEIWHGQALPV 149 (293)
Q Consensus 81 ~~~~~~~~L~~L~l~~c~~~~~~~---~~~~------~~~-~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 149 (293)
..+..+++|+.|.+.+|. ..... +... .+. ..+..+ ...+..+++|+.|+++++..+..++...
T Consensus 146 ~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---- 220 (477)
T 2id5_A 146 RAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC---- 220 (477)
T ss_dssp TSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT----
T ss_pred hhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc----
Confidence 456677888888887661 11100 0000 000 000001 1123456677777777766666555332
Q ss_pred ccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCcee
Q 037794 150 SFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRF 229 (293)
Q Consensus 150 ~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~ 229 (293)
....+|++|++++|. +.. ++...+..+++|+.|++.++. ++.++. ..+. .+++|++|.+.++ .++.+
T Consensus 221 ~~~~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~--------~l~~L~~L~L~~n-~l~~~ 287 (477)
T 2id5_A 221 LYGLNLTSLSITHCN-LTA-VPYLAVRHLVYLRFLNLSYNP-ISTIEG-SMLH--------ELLRLQEIQLVGG-QLAVV 287 (477)
T ss_dssp TTTCCCSEEEEESSC-CCS-CCHHHHTTCTTCCEEECCSSC-CCEECT-TSCT--------TCTTCCEEECCSS-CCSEE
T ss_pred ccCccccEEECcCCc-ccc-cCHHHhcCccccCeeECCCCc-CCccCh-hhcc--------ccccCCEEECCCC-ccceE
Confidence 122478888887775 334 366667888888888888843 544432 1111 2367777777774 45555
Q ss_pred ccCCCccccCCCcceEeeecCCCcccc
Q 037794 230 CNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 230 ~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
.. ..+..+++|++|+++++ +++.+
T Consensus 288 ~~--~~~~~l~~L~~L~L~~N-~l~~~ 311 (477)
T 2id5_A 288 EP--YAFRGLNYLRVLNVSGN-QLTTL 311 (477)
T ss_dssp CT--TTBTTCTTCCEEECCSS-CCSCC
T ss_pred CH--HHhcCcccCCEEECCCC-cCcee
Confidence 33 45666777777777776 56665
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.57 E-value=4.8e-14 Score=128.50 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=90.5
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc-C
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ-G 82 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~ 82 (293)
.+++++|+++++ .++.++... ...+++|++|+++++. +..+... ....+++|++|+++++ .++.+|. .
T Consensus 63 ~~~l~~L~L~~n-~i~~~~~~~-------~~~l~~L~~L~Ls~n~-i~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~ 131 (440)
T 3zyj_A 63 STNTRLLNLHEN-QIQIIKVNS-------FKHLRHLEILQLSRNH-IRTIEIG-AFNGLANLNTLELFDN-RLTTIPNGA 131 (440)
T ss_dssp CTTCSEEECCSC-CCCEECTTT-------TSSCSSCCEEECCSSC-CCEECGG-GGTTCSSCCEEECCSS-CCSSCCTTT
T ss_pred CCCCcEEEccCC-cCCeeCHHH-------hhCCCCCCEEECCCCc-CCccChh-hccCCccCCEEECCCC-cCCeeCHhH
Confidence 467888888886 566665432 1237888888887763 3444322 2446788888888875 5665554 4
Q ss_pred ccCCCCeeEEEeccccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEec
Q 037794 83 IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVD 161 (293)
Q Consensus 83 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~ 161 (293)
+..+++|+.|+++++. +..+. ..+..+++|+.|+++++..+..++.+. +..+++|++|+++
T Consensus 132 ~~~l~~L~~L~L~~N~---------------i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~---~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNP---------------IESIPSYAFNRIPSLRRLDLGELKRLSYISEGA---FEGLSNLRYLNLA 193 (440)
T ss_dssp SCSCSSCCEEECCSCC---------------CCEECTTTTTTCTTCCEEECCCCTTCCEECTTT---TTTCSSCCEEECT
T ss_pred hhccccCceeeCCCCc---------------ccccCHHHhhhCcccCEeCCCCCCCcceeCcch---hhcccccCeecCC
Confidence 5677888888887651 11111 123456667777776666666655443 4455666666666
Q ss_pred cCCCCCccCChhHHhccCCCCeEEecCc
Q 037794 162 DCANMSSAIPANLLRCLSNLRWLEVRNC 189 (293)
Q Consensus 162 ~c~~l~~~~p~~~~~~l~~L~~L~i~~c 189 (293)
+|. +..+ |. +..+++|++|++.++
T Consensus 194 ~n~-l~~~-~~--~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 194 MCN-LREI-PN--LTPLIKLDELDLSGN 217 (440)
T ss_dssp TSC-CSSC-CC--CTTCSSCCEEECTTS
T ss_pred CCc-Cccc-cc--cCCCcccCEEECCCC
Confidence 653 2222 32 445566666666653
No 20
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.57 E-value=8.9e-14 Score=121.84 Aligned_cols=216 Identities=19% Similarity=0.235 Sum_probs=120.8
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI 83 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~ 83 (293)
.++|++|+++++ .++.++... ...+++|++|+++++. +..+... ....+++|++|+++++ .++.+|..+
T Consensus 51 ~~~l~~L~L~~n-~i~~~~~~~-------~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~l~~~~ 119 (330)
T 1xku_A 51 PPDTALLDLQNN-KITEIKDGD-------FKNLKNLHTLILINNK-ISKISPG-AFAPLVKLERLYLSKN-QLKELPEKM 119 (330)
T ss_dssp CTTCCEEECCSS-CCCCBCTTT-------TTTCTTCCEEECCSSC-CCCBCTT-TTTTCTTCCEEECCSS-CCSBCCSSC
T ss_pred CCCCeEEECCCC-cCCEeChhh-------hccCCCCCEEECCCCc-CCeeCHH-HhcCCCCCCEEECCCC-cCCccChhh
Confidence 356777777775 455555421 1126677777776653 3333211 1345666777777664 344554433
Q ss_pred cCCCCeeEEEecccccccccc--ccCc------c----chhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCccc
Q 037794 84 VSTPKLHEVQVSKKEEDELHH--WEGN------K----LNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSF 151 (293)
Q Consensus 84 ~~~~~L~~L~l~~c~~~~~~~--~~~~------~----~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 151 (293)
. ++|+.|.++++.-..... +.+. + .-.........+..+++|+.|+++++. ++.++ ...
T Consensus 120 ~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~------~~~ 190 (330)
T 1xku_A 120 P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIP------QGL 190 (330)
T ss_dssp C--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCC------SSC
T ss_pred c--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCC------ccc
Confidence 2 556666665541000000 0000 0 000001122334567778888877743 44333 223
Q ss_pred CCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceecc
Q 037794 152 FNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCN 231 (293)
Q Consensus 152 l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~ 231 (293)
+++|++|+++++. +..+ +...+.++++|++|++.++ .++.++. ..+. .+++|++|++.++ .++.++
T Consensus 191 ~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~--------~l~~L~~L~L~~N-~l~~lp- 256 (330)
T 1xku_A 191 PPSLTELHLDGNK-ITKV-DAASLKGLNNLAKLGLSFN-SISAVDN-GSLA--------NTPHLRELHLNNN-KLVKVP- 256 (330)
T ss_dssp CTTCSEEECTTSC-CCEE-CTGGGTTCTTCCEEECCSS-CCCEECT-TTGG--------GSTTCCEEECCSS-CCSSCC-
T ss_pred cccCCEEECCCCc-CCcc-CHHHhcCCCCCCEEECCCC-cCceeCh-hhcc--------CCCCCCEEECCCC-cCccCC-
Confidence 3788888888876 4433 3344778888999988884 3444431 1121 2388999999886 566554
Q ss_pred CCCccccCCCcceEeeecCCCcccc
Q 037794 232 FTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 232 ~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
..+..+++|++|+++++ +++.+
T Consensus 257 --~~l~~l~~L~~L~l~~N-~i~~~ 278 (330)
T 1xku_A 257 --GGLADHKYIQVVYLHNN-NISAI 278 (330)
T ss_dssp --TTTTTCSSCCEEECCSS-CCCCC
T ss_pred --hhhccCCCcCEEECCCC-cCCcc
Confidence 56778889999999987 58777
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.57 E-value=1e-13 Score=126.60 Aligned_cols=40 Identities=15% Similarity=0.336 Sum_probs=19.8
Q ss_pred CcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794 213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
++|++|+++++ .++.+.. ..+..+++|++|+++++ +++.+
T Consensus 347 ~~L~~L~Ls~N-~l~~~~~--~~~~~l~~L~~L~L~~N-~l~~~ 386 (455)
T 3v47_A 347 DKLEVLDLSYN-HIRALGD--QSFLGLPNLKELALDTN-QLKSV 386 (455)
T ss_dssp TTCCEEECCSS-CCCEECT--TTTTTCTTCCEEECCSS-CCSCC
T ss_pred ccCCEEECCCC-cccccCh--hhccccccccEEECCCC-ccccC
Confidence 55555555553 3333322 34445555555555554 45554
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.57 E-value=1.1e-13 Score=126.02 Aligned_cols=204 Identities=17% Similarity=0.195 Sum_probs=127.0
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ 81 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~ 81 (293)
+.+++|++|+++++ .+..++... ...+++|++|+++++ .+..++.. ....+++|++|+++++. ++.+|.
T Consensus 85 ~~l~~L~~L~Ls~n-~i~~i~~~~-------~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-i~~~~~ 153 (440)
T 3zyj_A 85 KHLRHLEILQLSRN-HIRTIEIGA-------FNGLANLNTLELFDN-RLTTIPNG-AFVYLSKLKELWLRNNP-IESIPS 153 (440)
T ss_dssp SSCSSCCEEECCSS-CCCEECGGG-------GTTCSSCCEEECCSS-CCSSCCTT-TSCSCSSCCEEECCSCC-CCEECT
T ss_pred hCCCCCCEEECCCC-cCCccChhh-------ccCCccCCEEECCCC-cCCeeCHh-HhhccccCceeeCCCCc-ccccCH
Confidence 56778888888876 455555432 122778888888776 34555432 24467788888888753 555543
Q ss_pred -CccCCCCeeEEEeccccccccccccCccchhhhhhhhh-hhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEE
Q 037794 82 -GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYE-EMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLV 159 (293)
Q Consensus 82 -~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 159 (293)
.+..+++|+.|++++|. .+..+.. .+..+++|+.|+++++. ++.++. +..+++|++|+
T Consensus 154 ~~~~~l~~L~~L~l~~~~--------------~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~l~~L~~L~ 213 (440)
T 3zyj_A 154 YAFNRIPSLRRLDLGELK--------------RLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-----LTPLIKLDELD 213 (440)
T ss_dssp TTTTTCTTCCEEECCCCT--------------TCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-----CTTCSSCCEEE
T ss_pred HHhhhCcccCEeCCCCCC--------------CcceeCcchhhcccccCeecCCCCc-Cccccc-----cCCCcccCEEE
Confidence 45677888888887651 1111111 23567788888887753 444431 44667888888
Q ss_pred eccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccC
Q 037794 160 VDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEM 239 (293)
Q Consensus 160 i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l 239 (293)
++++. +..+ +...+.++++|+.|++.+ ..++.+.. ..+. .+++|++|+++++ .++.++. ..+..+
T Consensus 214 Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~-n~l~~~~~-~~~~--------~l~~L~~L~L~~N-~l~~~~~--~~~~~l 278 (440)
T 3zyj_A 214 LSGNH-LSAI-RPGSFQGLMHLQKLWMIQ-SQIQVIER-NAFD--------NLQSLVEINLAHN-NLTLLPH--DLFTPL 278 (440)
T ss_dssp CTTSC-CCEE-CTTTTTTCTTCCEEECTT-CCCCEECT-TSST--------TCTTCCEEECTTS-CCCCCCT--TTTSSC
T ss_pred CCCCc-cCcc-ChhhhccCccCCEEECCC-CceeEECh-hhhc--------CCCCCCEEECCCC-CCCccCh--hHhccc
Confidence 88774 4443 334477788888888887 34554432 1111 2378888888874 5666554 455677
Q ss_pred CCcceEeeecCC
Q 037794 240 PMLWSLTIENCP 251 (293)
Q Consensus 240 ~~L~~L~i~~C~ 251 (293)
++|+.|+++++|
T Consensus 279 ~~L~~L~L~~Np 290 (440)
T 3zyj_A 279 HHLERIHLHHNP 290 (440)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEcCCCC
Confidence 888888887643
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.56 E-value=1.6e-13 Score=125.23 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=27.4
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-ccC-ccCCCCeeEEEeccc
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQG-IVSTPKLHEVQVSKK 97 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~-~~~~~~L~~L~l~~c 97 (293)
+++|++|+++++..-...+.......+++|++|+++++. +..+ |.. +..+++|+.|+++++
T Consensus 102 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTC
T ss_pred cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCC
Confidence 455555555554321112222223345556666665543 2222 322 445566666666554
No 24
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=5.5e-14 Score=121.22 Aligned_cols=200 Identities=18% Similarity=0.192 Sum_probs=148.5
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ 81 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~ 81 (293)
+.++++++++++++ .++.+|... .++++.|+++++. +..+... ....+++|+.|+++++ .++.++.
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~~~----------~~~l~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~ 72 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPPDL----------PKDTTILHLSENL-LYTFSLA-TLMPYTRLTQLNLDRA-ELTKLQV 72 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCSCC----------CTTCCEEECTTSC-CSEEEGG-GGTTCTTCCEEECTTS-CCCEEEC
T ss_pred cccCCccEEECCCC-CCCcCCCCC----------CCCCCEEEcCCCc-CCccCHH-HhhcCCCCCEEECCCC-ccCcccC
Confidence 56789999999885 778887643 5689999999875 4444332 2557899999999986 5777765
Q ss_pred CccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEec
Q 037794 82 GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVD 161 (293)
Q Consensus 82 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~ 161 (293)
. ..+++|+.|+++++ .+..++..+..+++|+.|+++++ .++.++.+. +..+++|++|+++
T Consensus 73 ~-~~l~~L~~L~Ls~N---------------~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~---~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 73 D-GTLPVLGTLDLSHN---------------QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGA---LRGLGELQELYLK 132 (290)
T ss_dssp C-SCCTTCCEEECCSS---------------CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSST---TTTCTTCCEEECT
T ss_pred C-CCCCcCCEEECCCC---------------cCCcCchhhccCCCCCEEECCCC-cCcccCHHH---HcCCCCCCEEECC
Confidence 4 78899999999975 22344445577899999999985 466665444 5678999999999
Q ss_pred cCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCC
Q 037794 162 DCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPM 241 (293)
Q Consensus 162 ~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~ 241 (293)
++. ++.+ +...+..+++|+.|++.+ ..++.++. ..+. .+++|+.|++.+. .++.++ ..+...++
T Consensus 133 ~N~-l~~~-~~~~~~~l~~L~~L~L~~-N~l~~l~~-~~~~--------~l~~L~~L~L~~N-~l~~ip---~~~~~~~~ 196 (290)
T 1p9a_G 133 GNE-LKTL-PPGLLTPTPKLEKLSLAN-NNLTELPA-GLLN--------GLENLDTLLLQEN-SLYTIP---KGFFGSHL 196 (290)
T ss_dssp TSC-CCCC-CTTTTTTCTTCCEEECTT-SCCSCCCT-TTTT--------TCTTCCEEECCSS-CCCCCC---TTTTTTCC
T ss_pred CCC-CCcc-ChhhcccccCCCEEECCC-CcCCccCH-HHhc--------CcCCCCEEECCCC-cCCccC---hhhccccc
Confidence 885 4443 666688899999999998 45666652 1111 2389999999984 677765 56677789
Q ss_pred cceEeeecCC
Q 037794 242 LWSLTIENCP 251 (293)
Q Consensus 242 L~~L~i~~C~ 251 (293)
|+.|.+++.|
T Consensus 197 L~~l~L~~Np 206 (290)
T 1p9a_G 197 LPFAFLHGNP 206 (290)
T ss_dssp CSEEECCSCC
T ss_pred CCeEEeCCCC
Confidence 9999998643
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.55 E-value=2.1e-14 Score=136.91 Aligned_cols=63 Identities=16% Similarity=0.325 Sum_probs=51.0
Q ss_pred ccccccccceeeccccccccc------------------cccccccc--cCCCcceEeEcCCCCccccccCccCCCCeeE
Q 037794 32 NRIAFNELKFLELDDLPRLTS------------------FCLENYTL--EFPSLERVFVTRCPNMKTFSQGIVSTPKLHE 91 (293)
Q Consensus 32 ~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~--~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~ 91 (293)
.+..+++|++|+++++. +.. +|.. .. ++++|++|++++|.....+|..+..+++|+.
T Consensus 201 ~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~--l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTED--LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC--CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred HHhcccCCCEEECcCCc-cccccccccccccccchhcccCchh--hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 34458899999998876 554 5554 44 7899999999998877788888889999999
Q ss_pred EEeccc
Q 037794 92 VQVSKK 97 (293)
Q Consensus 92 L~l~~c 97 (293)
|+++++
T Consensus 278 L~Ls~n 283 (636)
T 4eco_A 278 INVACN 283 (636)
T ss_dssp EECTTC
T ss_pred EECcCC
Confidence 999887
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.55 E-value=1.9e-14 Score=136.09 Aligned_cols=218 Identities=14% Similarity=0.106 Sum_probs=130.4
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ 81 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~ 81 (293)
+.+++|++|+++++ .++.++ ... .+++|++|+++++.. ..++. . .+++|++|++++|..+..+
T Consensus 282 ~~l~~L~~L~l~~~-~~~~l~-~l~--------~~~~L~~L~l~~n~l-~~lp~---~-~l~~L~~L~l~~n~~~~~~-- 344 (606)
T 3vq2_A 282 HCLANVSAMSLAGV-SIKYLE-DVP--------KHFKWQSLSIIRCQL-KQFPT---L-DLPFLKSLTLTMNKGSISF-- 344 (606)
T ss_dssp GGGTTCSEEEEESC-CCCCCC-CCC--------TTCCCSEEEEESCCC-SSCCC---C-CCSSCCEEEEESCSSCEEC--
T ss_pred ccCCCCCEEEecCc-cchhhh-hcc--------ccccCCEEEcccccC-ccccc---C-CCCccceeeccCCcCccch--
Confidence 45789999999987 456666 222 388999999999875 66762 2 7899999999998666654
Q ss_pred CccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCC----------------
Q 037794 82 GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQ---------------- 145 (293)
Q Consensus 82 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~---------------- 145 (293)
....+++|+.|+++++.- ... ...+.....+++|+.|+++++. +..++ ..
T Consensus 345 ~~~~l~~L~~L~ls~n~l-~~~-----------~~~~~~~~~~~~L~~L~L~~n~-l~~~~-~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNAL-SFS-----------GCCSYSDLGTNSLRHLDLSFNG-AIIMS-ANFMGLEELQHLDFQHST 410 (606)
T ss_dssp CCCCCTTCCEEECCSSCE-EEE-----------EECCHHHHCCSCCCEEECCSCS-EEEEC-CCCTTCTTCCEEECTTSE
T ss_pred hhccCCCCCEEECcCCcc-CCC-----------cchhhhhccCCcccEeECCCCc-cccch-hhccCCCCCCeeECCCCc
Confidence 355789999999987611 100 0011222344455555554432 33322 11
Q ss_pred -----C-CCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEe
Q 037794 146 -----A-LPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILR 219 (293)
Q Consensus 146 -----~-~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~ 219 (293)
+ ..+..+++|++|++++|..... .|. .+.++++|++|++.+|.--..+.. ..+. .+++|++|+
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~~--------~l~~L~~L~ 479 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKID-FDG-IFLGLTSLNTLKMAGNSFKDNTLS-NVFA--------NTTNLTFLD 479 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEEC-CTT-TTTTCTTCCEEECTTCEEGGGEEC-SCCT--------TCTTCCEEE
T ss_pred cCCccChhhhhccccCCEEECcCCCCCcc-chh-hhcCCCCCCEEECCCCcCCCcchH-Hhhc--------cCCCCCEEE
Confidence 0 0123455566666665543332 122 255566666666666432111110 1111 238999999
Q ss_pred cCCCCCCceeccCCCccccCCCcceEeeecCCCccccccccchhhc
Q 037794 220 LIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVT 265 (293)
Q Consensus 220 l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~ 265 (293)
++++ .++.+.. ..+..+++|++|++++| +++.+.|..++.+.
T Consensus 480 Ls~n-~l~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 480 LSKC-QLEQISW--GVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLY 521 (606)
T ss_dssp CTTS-CCCEECT--TTTTTCTTCCEEECCSS-CCSCEEGGGTTTCT
T ss_pred CCCC-cCCccCh--hhhcccccCCEEECCCC-cCCCcCHHHccCCC
Confidence 9987 5666543 56788899999999998 57776565555443
No 27
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.55 E-value=2e-13 Score=124.77 Aligned_cols=205 Identities=17% Similarity=0.165 Sum_probs=149.0
Q ss_pred CCCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794 1 VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS 80 (293)
Q Consensus 1 ~g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp 80 (293)
++.+++|++|+++++ .++.++... ...+++|++|+++++. +..++.. ....+++|++|+++++. ++.+|
T Consensus 95 ~~~l~~L~~L~Ls~n-~i~~~~~~~-------~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~ 163 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRN-SIRQIEVGA-------FNGLASLNTLELFDNW-LTVIPSG-AFEYLSKLRELWLRNNP-IESIP 163 (452)
T ss_dssp TTTCTTCCEEECCSS-CCCEECTTT-------TTTCTTCCEEECCSSC-CSBCCTT-TSSSCTTCCEEECCSCC-CCEEC
T ss_pred cCCCCCCCEEECCCC-ccCCcChhh-------ccCcccCCEEECCCCc-CCccChh-hhcccCCCCEEECCCCC-cceeC
Confidence 367899999999997 667666432 2238999999999874 5555543 24578999999999874 66665
Q ss_pred c-CccCCCCeeEEEeccccccccccccCccchhhhhhhhh-hhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEE
Q 037794 81 Q-GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYE-EMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKL 158 (293)
Q Consensus 81 ~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 158 (293)
. .+..+++|+.|++++|. .+..+.. .+..+++|+.|+++++. ++.++. +..+++|++|
T Consensus 164 ~~~~~~l~~L~~L~l~~~~--------------~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~l~~L~~L 223 (452)
T 3zyi_A 164 SYAFNRVPSLMRLDLGELK--------------KLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN-----LTPLVGLEEL 223 (452)
T ss_dssp TTTTTTCTTCCEEECCCCT--------------TCCEECTTTTTTCTTCCEEECTTSC-CSSCCC-----CTTCTTCCEE
T ss_pred HhHHhcCCcccEEeCCCCC--------------CccccChhhccCCCCCCEEECCCCc-cccccc-----ccccccccEE
Confidence 4 56789999999999762 2222222 24678999999999864 554431 4577999999
Q ss_pred EeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCcccc
Q 037794 159 VVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIE 238 (293)
Q Consensus 159 ~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~ 238 (293)
+++++... .+ +...+.++++|+.|++.++ .++.+.. ..+. .+++|++|++.++ .++.++. ..+..
T Consensus 224 ~Ls~N~l~-~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~--------~l~~L~~L~L~~N-~l~~~~~--~~~~~ 288 (452)
T 3zyi_A 224 EMSGNHFP-EI-RPGSFHGLSSLKKLWVMNS-QVSLIER-NAFD--------GLASLVELNLAHN-NLSSLPH--DLFTP 288 (452)
T ss_dssp ECTTSCCS-EE-CGGGGTTCTTCCEEECTTS-CCCEECT-TTTT--------TCTTCCEEECCSS-CCSCCCT--TSSTT
T ss_pred ECcCCcCc-cc-CcccccCccCCCEEEeCCC-cCceECH-HHhc--------CCCCCCEEECCCC-cCCccCh--HHhcc
Confidence 99998644 43 4455889999999999994 4555532 2222 2389999999986 6777654 55678
Q ss_pred CCCcceEeeecCC
Q 037794 239 MPMLWSLTIENCP 251 (293)
Q Consensus 239 l~~L~~L~i~~C~ 251 (293)
+++|++|+++++|
T Consensus 289 l~~L~~L~L~~Np 301 (452)
T 3zyi_A 289 LRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEccCCC
Confidence 9999999998854
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.53 E-value=2e-14 Score=125.22 Aligned_cols=213 Identities=13% Similarity=0.053 Sum_probs=149.7
Q ss_pred CCCCCcceEeccccccce-EeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794 2 GIPNSLVNLNVSYCEKIE-EIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS 80 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~-~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp 80 (293)
+.+++|++|+++++..+. .+|...+ .+++|++|+++++..-...+.. ...+++|++|+++++.--..+|
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~--------~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p 142 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIA--------KLTQLHYLYITHTNVSGAIPDF--LSQIKTLVTLDFSYNALSGTLP 142 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGG--------GCTTCSEEEEEEECCEEECCGG--GGGCTTCCEEECCSSEEESCCC
T ss_pred hCCCCCCeeeCCCCCcccccCChhHh--------cCCCCCEEECcCCeeCCcCCHH--HhCCCCCCEEeCCCCccCCcCC
Confidence 568999999999644555 4554333 3999999999987544345543 5689999999999975444778
Q ss_pred cCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCC-CccEEEecCCCCceEeccCCCCCcccCCCccEEE
Q 037794 81 QGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFR-DIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLV 159 (293)
Q Consensus 81 ~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 159 (293)
..+..+++|+.|+++++ .....++..+..++ +|+.|+++++. +....... +..+. |++|+
T Consensus 143 ~~~~~l~~L~~L~L~~N--------------~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~---~~~l~-L~~L~ 203 (313)
T 1ogq_A 143 PSISSLPNLVGITFDGN--------------RISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPT---FANLN-LAFVD 203 (313)
T ss_dssp GGGGGCTTCCEEECCSS--------------CCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGG---GGGCC-CSEEE
T ss_pred hHHhcCCCCCeEECcCC--------------cccCcCCHHHhhhhhcCcEEECcCCe-eeccCChH---HhCCc-ccEEE
Confidence 88889999999999976 11123445556676 99999999864 44322222 34444 99999
Q ss_pred eccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccC
Q 037794 160 VDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEM 239 (293)
Q Consensus 160 i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l 239 (293)
++++.... . +...+..+++|+.|++.++. ++..+. ... .+++|++|++.++ .++.. .|..+..+
T Consensus 204 Ls~N~l~~-~-~~~~~~~l~~L~~L~L~~N~-l~~~~~--~~~--------~l~~L~~L~Ls~N-~l~~~--~p~~l~~l 267 (313)
T 1ogq_A 204 LSRNMLEG-D-ASVLFGSDKNTQKIHLAKNS-LAFDLG--KVG--------LSKNLNGLDLRNN-RIYGT--LPQGLTQL 267 (313)
T ss_dssp CCSSEEEE-C-CGGGCCTTSCCSEEECCSSE-ECCBGG--GCC--------CCTTCCEEECCSS-CCEEC--CCGGGGGC
T ss_pred CcCCcccC-c-CCHHHhcCCCCCEEECCCCc-eeeecC--ccc--------ccCCCCEEECcCC-cccCc--CChHHhcC
Confidence 99886443 3 33457889999999999954 332221 111 3489999999986 45532 22678899
Q ss_pred CCcceEeeecCCCcccccccc
Q 037794 240 PMLWSLTIENCPDMETFISNS 260 (293)
Q Consensus 240 ~~L~~L~i~~C~~L~~l~p~~ 260 (293)
++|++|+++++ +++..+|..
T Consensus 268 ~~L~~L~Ls~N-~l~~~ip~~ 287 (313)
T 1ogq_A 268 KFLHSLNVSFN-NLCGEIPQG 287 (313)
T ss_dssp TTCCEEECCSS-EEEEECCCS
T ss_pred cCCCEEECcCC-cccccCCCC
Confidence 99999999998 576443754
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.53 E-value=6e-13 Score=119.24 Aligned_cols=91 Identities=14% Similarity=0.084 Sum_probs=52.1
Q ss_pred CCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794 153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF 232 (293)
Q Consensus 153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~ 232 (293)
++|++|+++++.... . ..+..+++|++|++.++ .++.+.. ..+. .+++|++|++.++ .++.++
T Consensus 226 ~~L~~L~l~~n~l~~-~---~~l~~l~~L~~L~Ls~n-~l~~~~~-~~~~--------~l~~L~~L~L~~n-~l~~~~-- 288 (390)
T 3o6n_A 226 VELTILKLQHNNLTD-T---AWLLNYPGLVEVDLSYN-ELEKIMY-HPFV--------KMQRLERLYISNN-RLVALN-- 288 (390)
T ss_dssp SSCCEEECCSSCCCC-C---GGGGGCTTCSEEECCSS-CCCEEES-GGGT--------TCSSCCEEECCSS-CCCEEE--
T ss_pred ccccEEECCCCCCcc-c---HHHcCCCCccEEECCCC-cCCCcCh-hHcc--------ccccCCEEECCCC-cCcccC--
Confidence 566666666664332 1 23566777777777774 3433321 1111 2377777777774 555554
Q ss_pred CCccccCCCcceEeeecCCCccccccccchh
Q 037794 233 TGNIIEMPMLWSLTIENCPDMETFISNSVLH 263 (293)
Q Consensus 233 ~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~ 263 (293)
.....+++|++|++++| +++.+ |..++.
T Consensus 289 -~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~ 316 (390)
T 3o6n_A 289 -LYGQPIPTLKVLDLSHN-HLLHV-ERNQPQ 316 (390)
T ss_dssp -CSSSCCTTCCEEECCSS-CCCCC-GGGHHH
T ss_pred -cccCCCCCCCEEECCCC-cceec-Cccccc
Confidence 33356677777777776 56666 654433
No 30
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=1.4e-13 Score=117.44 Aligned_cols=214 Identities=16% Similarity=0.175 Sum_probs=129.3
Q ss_pred CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cCc
Q 037794 5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QGI 83 (293)
Q Consensus 5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~~ 83 (293)
++|++|+++++ .++.++... ...+++|++|+++++ .+..++.. ....+++|+.|+++++. ++.++ ..+
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~-------~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYS-------FFSFPELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGNP-IQSLALGAF 96 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTT-------TTTCTTCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred CCccEEECCCC-cccccCHhH-------hccccCCcEEECCCC-cCCccCHH-HccCCcCCCEEECCCCc-cCccChhhh
Confidence 45788888776 566665422 112778888888776 34444432 13467788888888764 44433 456
Q ss_pred cCCCCeeEEEeccccccccccccCccchhhhhhhhh-hhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEecc
Q 037794 84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYE-EMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDD 162 (293)
Q Consensus 84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~ 162 (293)
..+++|+.|.+.++. +..+.. .+..+++|+.|+++++. ++.+... ..+..+++|++|++++
T Consensus 97 ~~l~~L~~L~l~~n~---------------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~--~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 97 SGLSSLQKLVAVETN---------------LASLENFPIGHLKTLKELNVAHNL-IQSFKLP--EYFSNLTNLEHLDLSS 158 (276)
T ss_dssp TTCTTCCEEECTTSC---------------CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCC--GGGGGCTTCCEEECCS
T ss_pred cCCccccEEECCCCC---------------ccccCchhcccCCCCCEEECcCCc-cceecCc--hhhccCCCCCEEECCC
Confidence 777888888887651 111111 23567788888887753 3332100 1145667888888887
Q ss_pred CCCCCccCChhHHhccCCCC----eEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCcccc
Q 037794 163 CANMSSAIPANLLRCLSNLR----WLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIE 238 (293)
Q Consensus 163 c~~l~~~~p~~~~~~l~~L~----~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~ 238 (293)
+... .+ +...+..+++|+ +|++.+ ..++.++. +.. ...+|++|++.++ .++.++. ..+..
T Consensus 159 N~l~-~~-~~~~~~~l~~L~~l~l~L~ls~-n~l~~~~~--~~~--------~~~~L~~L~L~~n-~l~~~~~--~~~~~ 222 (276)
T 2z62_A 159 NKIQ-SI-YCTDLRVLHQMPLLNLSLDLSL-NPMNFIQP--GAF--------KEIRLKELALDTN-QLKSVPD--GIFDR 222 (276)
T ss_dssp SCCC-EE-CGGGGHHHHTCTTCCEEEECCS-SCCCEECT--TSS--------CSCCEEEEECCSS-CCSCCCT--TTTTT
T ss_pred CCCC-cC-CHHHhhhhhhccccceeeecCC-CcccccCc--ccc--------CCCcccEEECCCC-ceeecCH--hHhcc
Confidence 7533 32 433455556665 677776 34544431 111 1258999999986 4777654 45678
Q ss_pred CCCcceEeee------cCCCccccccccchhh
Q 037794 239 MPMLWSLTIE------NCPDMETFISNSVLHV 264 (293)
Q Consensus 239 l~~L~~L~i~------~C~~L~~l~p~~l~~l 264 (293)
+++|++|+++ +|++++.+ ..++.+.
T Consensus 223 l~~L~~L~l~~N~~~c~c~~l~~l-~~~~~~~ 253 (276)
T 2z62_A 223 LTSLQKIWLHTNPWDCSCPRIDYL-SRWLNKN 253 (276)
T ss_dssp CCSCCEEECCSSCBCCCTTTTHHH-HHHHHHT
T ss_pred cccccEEEccCCcccccCCchHHH-HHHHHhc
Confidence 9999999998 46666555 5555443
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.52 E-value=1.4e-14 Score=138.19 Aligned_cols=221 Identities=10% Similarity=0.044 Sum_probs=142.2
Q ss_pred CCCCCCcceEeccccccceE------------------eccccccccccccccccccceeeccccccccccccccccccC
Q 037794 1 VGIPNSLVNLNVSYCEKIEE------------------IIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEF 62 (293)
Q Consensus 1 ~g~l~~L~~L~l~~c~~l~~------------------i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 62 (293)
++++++|++|+++++. ++. +|...+-. .+++|++|+++++.....+|.. ..++
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~------~l~~L~~L~L~~n~l~~~~p~~--l~~l 272 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWD------NLKDLTDVEVYNCPNLTKLPTF--LKAL 272 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGG------GCTTCCEEEEECCTTCSSCCTT--TTTC
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhc------ccCCCCEEEecCCcCCccChHH--HhcC
Confidence 3678899999999985 555 55544300 3899999999998766666644 5688
Q ss_pred CCcceEeEcCCCCcc--ccccCccCC------CCeeEEEeccccccccccccCccchhhhhhhhh--hhccCCCccEEEe
Q 037794 63 PSLERVFVTRCPNMK--TFSQGIVST------PKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYE--EMIGFRDIERLQL 132 (293)
Q Consensus 63 ~~L~~L~i~~c~~l~--~lp~~~~~~------~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~l 132 (293)
++|+.|++++|..++ .+|..+..+ ++|+.|+++++ .+..++. .+..+++|+.|++
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n---------------~l~~ip~~~~l~~l~~L~~L~L 337 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN---------------NLKTFPVETSLQKMKKLGMLEC 337 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS---------------CCSSCCCHHHHTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC---------------cCCccCchhhhccCCCCCEEeC
Confidence 999999999987455 477666554 89999999876 1124444 5677888888888
Q ss_pred cCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCC-CCeEEecCccccccccccccccc--------
Q 037794 133 SHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSN-LRWLEVRNCDSLEEVLHLEELNA-------- 203 (293)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~-L~~L~i~~c~~l~~i~~~~~~~~-------- 203 (293)
+++.--..++ . +..+++|++|+++++... . +|.. +.++++ |++|++.++. ++.++..-+...
T Consensus 338 ~~N~l~g~ip--~---~~~l~~L~~L~L~~N~l~-~-lp~~-l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 338 LYNQLEGKLP--A---FGSEIKLASLNLAYNQIT-E-IPAN-FCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAID 408 (636)
T ss_dssp CSCCCEEECC--C---CEEEEEESEEECCSSEEE-E-CCTT-SEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEE
T ss_pred cCCcCccchh--h---hCCCCCCCEEECCCCccc-c-ccHh-hhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEE
Confidence 8755322554 2 445677888888777533 3 3554 666777 8888877743 444442110000
Q ss_pred -----cccc-CCC---------CCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCccccccc
Q 037794 204 -----DKEH-IGP---------LFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISN 259 (293)
Q Consensus 204 -----~~~~-~~~---------~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~ 259 (293)
..+. +.. ..++|++|++.++ .++.++. .....+++|++|++++| +++.+ |.
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~--~~~~~l~~L~~L~Ls~N-~l~~i-~~ 474 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPK--ELFSTGSPLSSINLMGN-MLTEI-PK 474 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCT--HHHHTTCCCSEEECCSS-CCSBC-CS
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCH--HHHccCCCCCEEECCCC-CCCCc-CH
Confidence 0000 000 1247888888775 4555542 23345888999999887 67777 64
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=126.05 Aligned_cols=167 Identities=14% Similarity=0.102 Sum_probs=77.4
Q ss_pred CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC-c
Q 037794 5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG-I 83 (293)
Q Consensus 5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~-~ 83 (293)
++|++|+++++ .++.++... ...+++|++|+++++ .+..+... ....+++|++|+++++ .++.+|.. +
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~-------~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 120 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSD-------LQRCVNLQALVLTSN-GINTIEED-SFSSLGSLEHLDLSYN-YLSNLSSSWF 120 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTT-------TTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSSCCHHHH
T ss_pred ccCcEEECCCC-cCcccCHHH-------hccCCCCCEEECCCC-ccCccCHh-hcCCCCCCCEEECCCC-cCCcCCHhHh
Confidence 46777777765 455555422 112666666666665 23333221 1335566666666654 34444433 4
Q ss_pred cCCCCeeEEEeccccccccccc-cCc---------c--chhhhhhh-hhhhccCCCccEEEecCCCCceEeccCCCCCcc
Q 037794 84 VSTPKLHEVQVSKKEEDELHHW-EGN---------K--LNSTIQKR-YEEMIGFRDIERLQLSHFPRLKEIWHGQALPVS 150 (293)
Q Consensus 84 ~~~~~L~~L~l~~c~~~~~~~~-~~~---------~--~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 150 (293)
..+++|+.|+++++. ...... ... + -+..+..+ ...+..+++|+.|+++++. +..+.... +.
T Consensus 121 ~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---l~ 195 (353)
T 2z80_A 121 KPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS---LK 195 (353)
T ss_dssp TTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT---TT
T ss_pred CCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHH---Hh
Confidence 556666666666541 000000 000 0 00001111 1123345555555555533 33332222 34
Q ss_pred cCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794 151 FFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC 189 (293)
Q Consensus 151 ~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c 189 (293)
.+++|++|+++++.. .. ++...+..+++|+.|++.++
T Consensus 196 ~l~~L~~L~l~~n~l-~~-~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 196 SIQNVSHLILHMKQH-IL-LLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp TCSEEEEEEEECSCS-TT-HHHHHHHHTTTEEEEEEESC
T ss_pred ccccCCeecCCCCcc-cc-chhhhhhhcccccEEECCCC
Confidence 456666666665542 32 24444455666666666663
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.51 E-value=1.3e-13 Score=119.37 Aligned_cols=221 Identities=15% Similarity=0.130 Sum_probs=149.1
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS- 80 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp- 80 (293)
+.+++|++|+++++ .++.+.... .....+++|++|+++++. +..++.. ...+++|++|+++++ .++.++
T Consensus 49 ~~l~~L~~L~L~~n-~l~~~~~~~-----~~~~~~~~L~~L~Ls~n~-i~~l~~~--~~~l~~L~~L~l~~n-~l~~~~~ 118 (306)
T 2z66_A 49 DKLTQLTKLSLSSN-GLSFKGCCS-----QSDFGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHS-NLKQMSE 118 (306)
T ss_dssp TTCTTCSEEECCSS-CCCEEEEEE-----HHHHSCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTS-EEESSTT
T ss_pred hccccCCEEECCCC-ccCcccCcc-----cccccccccCEEECCCCc-cccChhh--cCCCCCCCEEECCCC-ccccccc
Confidence 57899999999987 454442110 011238999999999874 4445543 557999999999986 455554
Q ss_pred -cCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceE-eccCCCCCcccCCCccEE
Q 037794 81 -QGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKE-IWHGQALPVSFFNNLFKL 158 (293)
Q Consensus 81 -~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L 158 (293)
..+..+++|+.|+++++. .....+..+..+++|+.|+++++. +.. ..... +..+++|++|
T Consensus 119 ~~~~~~l~~L~~L~l~~n~--------------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~---~~~l~~L~~L 180 (306)
T 2z66_A 119 FSVFLSLRNLIYLDISHTH--------------TRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI---FTELRNLTFL 180 (306)
T ss_dssp TTTTTTCTTCCEEECTTSC--------------CEECSTTTTTTCTTCCEEECTTCE-EGGGEECSC---CTTCTTCCEE
T ss_pred chhhhhccCCCEEECCCCc--------------CCccchhhcccCcCCCEEECCCCc-cccccchhH---HhhCcCCCEE
Confidence 356789999999999761 111122334678999999999864 332 22122 5678999999
Q ss_pred EeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCcccc
Q 037794 159 VVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIE 238 (293)
Q Consensus 159 ~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~ 238 (293)
++++|.. ..+ +...+..+++|++|++.++ .++.++. ..+. .+++|++|+++++ .++.... ..+..
T Consensus 181 ~Ls~n~l-~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~--------~l~~L~~L~L~~N-~l~~~~~--~~~~~ 245 (306)
T 2z66_A 181 DLSQCQL-EQL-SPTAFNSLSSLQVLNMSHN-NFFSLDT-FPYK--------CLNSLQVLDYSLN-HIMTSKK--QELQH 245 (306)
T ss_dssp ECTTSCC-CEE-CTTTTTTCTTCCEEECTTS-CCSBCCS-GGGT--------TCTTCCEEECTTS-CCCBCSS--SSCCC
T ss_pred ECCCCCc-CCc-CHHHhcCCCCCCEEECCCC-ccCccCh-hhcc--------CcccCCEeECCCC-CCcccCH--HHHHh
Confidence 9999864 443 3445788999999999995 4555432 1111 2489999999997 4555432 55667
Q ss_pred CC-CcceEeeecCCCcccc-----ccccchhhcc
Q 037794 239 MP-MLWSLTIENCPDMETF-----ISNSVLHVTT 266 (293)
Q Consensus 239 l~-~L~~L~i~~C~~L~~l-----~p~~l~~l~~ 266 (293)
++ +|++|++++++ ++.- |+.++.....
T Consensus 246 ~~~~L~~L~L~~N~-~~~~c~~~~~~~~l~~~~~ 278 (306)
T 2z66_A 246 FPSSLAFLNLTQND-FACTCEHQSFLQWIKDQRQ 278 (306)
T ss_dssp CCTTCCEEECTTCC-EECSGGGHHHHHHHHHTGG
T ss_pred hhccCCEEEccCCC-eecccChHHHHHHHHhhhh
Confidence 74 99999999874 4322 3566665554
No 34
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.51 E-value=1.8e-13 Score=114.39 Aligned_cols=203 Identities=10% Similarity=0.058 Sum_probs=149.7
Q ss_pred CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc-Cc
Q 037794 5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ-GI 83 (293)
Q Consensus 5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~~ 83 (293)
++|++|+++++ +++.++...- ..+++|++|+++++..++.++.. ....+++|++|++++|..++.+|. .+
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~~-------~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHAF-------SNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTTT-------TTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CcccEEEEeCC-cceEECHHHc-------cCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 47999999996 6788876421 23899999999998767766653 245789999999998778888764 56
Q ss_pred cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCcc---EEEecCCCCceEeccCCCCCcccCCCcc-EEE
Q 037794 84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIE---RLQLSHFPRLKEIWHGQALPVSFFNNLF-KLV 159 (293)
Q Consensus 84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~---~L~l~~~~~l~~~~~~~~~~~~~l~~L~-~L~ 159 (293)
..+++|+.|.++++ .+..++. +..+++|+ .|++++++.++.++.+. +..+++|+ +|+
T Consensus 102 ~~l~~L~~L~l~~n---------------~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~---~~~l~~L~~~L~ 162 (239)
T 2xwt_C 102 KELPLLKFLGIFNT---------------GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNA---FQGLCNETLTLK 162 (239)
T ss_dssp ECCTTCCEEEEEEE---------------CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTT---TTTTBSSEEEEE
T ss_pred CCCCCCCEEeCCCC---------------CCccccc-cccccccccccEEECCCCcchhhcCccc---ccchhcceeEEE
Confidence 78999999999976 1112222 34556666 99999976788887655 56789999 999
Q ss_pred eccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCC-CcccEEecCCCCCCceeccCCCcccc
Q 037794 160 VDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLF-PRLFILRLIDLPKLKRFCNFTGNIIE 238 (293)
Q Consensus 160 i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f-~~L~~L~l~~~~~l~~~~~~~~~~~~ 238 (293)
++++.. +.+ |...+.. ++|++|++.++..++.++. ..+. .+ ++|++|++.+ ..++.++. ..
T Consensus 163 l~~n~l-~~i-~~~~~~~-~~L~~L~L~~n~~l~~i~~-~~~~--------~l~~~L~~L~l~~-N~l~~l~~-----~~ 224 (239)
T 2xwt_C 163 LYNNGF-TSV-QGYAFNG-TKLDAVYLNKNKYLTVIDK-DAFG--------GVYSGPSLLDVSQ-TSVTALPS-----KG 224 (239)
T ss_dssp CCSCCC-CEE-CTTTTTT-CEEEEEECTTCTTCCEECT-TTTT--------TCSBCCSEEECTT-CCCCCCCC-----TT
T ss_pred cCCCCC-ccc-CHhhcCC-CCCCEEEcCCCCCcccCCH-HHhh--------ccccCCcEEECCC-CccccCCh-----hH
Confidence 988864 443 6665665 8999999999766777752 2111 24 7999999998 56777653 26
Q ss_pred CCCcceEeeecCCCc
Q 037794 239 MPMLWSLTIENCPDM 253 (293)
Q Consensus 239 l~~L~~L~i~~C~~L 253 (293)
+++|++|+++++.+|
T Consensus 225 ~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 225 LEHLKELIARNTWTL 239 (239)
T ss_dssp CTTCSEEECTTC---
T ss_pred hccCceeeccCccCC
Confidence 899999999998764
No 35
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=6.4e-13 Score=113.16 Aligned_cols=198 Identities=20% Similarity=0.237 Sum_probs=140.1
Q ss_pred CcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc-c
Q 037794 6 SLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI-V 84 (293)
Q Consensus 6 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~-~ 84 (293)
+.+++++++. .++.+|... .+++++|+++++. +..++.. ....+++|++|+++++ .++.+|... .
T Consensus 17 ~~~~l~~~~~-~l~~ip~~~----------~~~l~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~i~~~~~~ 82 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSNI----------PADTKKLDLQSNK-LSSLPSK-AFHRLTKLRLLYLNDN-KLQTLPAGIFK 82 (270)
T ss_dssp TTTEEECTTS-CCSSCCSCC----------CTTCSEEECCSSC-CSCCCTT-SSSSCTTCCEEECCSS-CCSCCCTTTTS
T ss_pred CCCEEEccCC-CCCccCCCC----------CCCCCEEECcCCC-CCeeCHH-HhcCCCCCCEEECCCC-ccCeeChhhhc
Confidence 4567777664 666666532 4579999998874 4555432 2457899999999986 566666544 7
Q ss_pred CCCCeeEEEeccccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794 85 STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC 163 (293)
Q Consensus 85 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c 163 (293)
.+++|+.|+++++ .+..++ ..+..+++|+.|+++++. ++.++... +..+++|++|+++++
T Consensus 83 ~l~~L~~L~l~~n---------------~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 83 ELKNLETLWVTDN---------------KLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRV---FDSLTKLTYLSLGYN 143 (270)
T ss_dssp SCTTCCEEECCSS---------------CCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC---------------cCCcCCHhHcccccCCCEEECCCCc-cCeeCHHH---hCcCcCCCEEECCCC
Confidence 7999999999876 111222 223668899999999854 55555433 567899999999988
Q ss_pred CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcc
Q 037794 164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLW 243 (293)
Q Consensus 164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~ 243 (293)
. +..+ +...+..+++|++|++.++ .++.++. ..+. .+++|++|++.++ .++.++. ..+..+++|+
T Consensus 144 ~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~--------~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~ 208 (270)
T 2o6q_A 144 E-LQSL-PKGVFDKLTSLKELRLYNN-QLKRVPE-GAFD--------KLTELKTLKLDNN-QLKRVPE--GAFDSLEKLK 208 (270)
T ss_dssp C-CCCC-CTTTTTTCTTCCEEECCSS-CCSCCCT-TTTT--------TCTTCCEEECCSS-CCSCCCT--TTTTTCTTCC
T ss_pred c-CCcc-CHhHccCCcccceeEecCC-cCcEeCh-hHhc--------cCCCcCEEECCCC-cCCcCCH--HHhccccCCC
Confidence 6 4443 6666888999999999985 4555542 1111 2389999999986 6777654 4577899999
Q ss_pred eEeeecCC
Q 037794 244 SLTIENCP 251 (293)
Q Consensus 244 ~L~i~~C~ 251 (293)
.|+++++|
T Consensus 209 ~L~l~~N~ 216 (270)
T 2o6q_A 209 MLQLQENP 216 (270)
T ss_dssp EEECCSSC
T ss_pred EEEecCCC
Confidence 99998864
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.49 E-value=1.5e-13 Score=128.86 Aligned_cols=117 Identities=17% Similarity=0.217 Sum_probs=62.9
Q ss_pred hccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccc-cccccc
Q 037794 121 MIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLE-EVLHLE 199 (293)
Q Consensus 121 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~-~i~~~~ 199 (293)
+..+++|+.|+++++. +...... ..+..+++|++|++++|..... +...+.++++|+.|++.+|.-.. .++ .
T Consensus 392 ~~~l~~L~~L~l~~n~-l~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~p--~ 464 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSN-LKQMSEF--SVFLSLRNLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAGNSFQENFLP--D 464 (570)
T ss_dssp EETCTTCCEEECTTSE-EESCTTS--CTTTTCTTCCEEECTTSCCEEC--CTTTTTTCTTCCEEECTTCEEGGGEEC--S
T ss_pred ccccCCCCEEEccCCc-cccccch--hhhhcCCCCCEEeCcCCccccc--chhhhhcCCcCcEEECcCCcCccccch--h
Confidence 3455666666666543 2222110 0134566777777777653332 22335667777777777754221 122 1
Q ss_pred ccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794 200 ELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 200 ~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
.+. .+++|++|++.++ .++.+.. ..+..+++|++|++++| +++.+
T Consensus 465 ~~~--------~l~~L~~L~l~~n-~l~~~~~--~~~~~l~~L~~L~l~~n-~l~~~ 509 (570)
T 2z63_A 465 IFT--------ELRNLTFLDLSQC-QLEQLSP--TAFNSLSSLQVLNMASN-QLKSV 509 (570)
T ss_dssp CCT--------TCTTCCEEECTTS-CCCEECT--TTTTTCTTCCEEECCSS-CCSCC
T ss_pred hhh--------cccCCCEEECCCC-ccccCCh--hhhhcccCCCEEeCCCC-cCCCC
Confidence 111 2367777777775 4555422 45566777777777776 56666
No 37
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.49 E-value=1.4e-13 Score=120.05 Aligned_cols=201 Identities=12% Similarity=0.074 Sum_probs=108.3
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI 83 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~ 83 (293)
+++|++|+++++ .++.++... ...+++|++|+++++..- .... ...+++|+.|++++| .++.++
T Consensus 33 ~~~L~~L~L~~n-~l~~~~~~~-------~~~l~~L~~L~Ls~n~l~-~~~~---~~~l~~L~~L~Ls~n-~l~~l~--- 96 (317)
T 3o53_A 33 AWNVKELDLSGN-PLSQISAAD-------LAPFTKLELLNLSSNVLY-ETLD---LESLSTLRTLDLNNN-YVQELL--- 96 (317)
T ss_dssp GGGCSEEECTTS-CCCCCCHHH-------HTTCTTCCEEECTTSCCE-EEEE---ETTCTTCCEEECCSS-EEEEEE---
T ss_pred CCCCCEEECcCC-ccCcCCHHH-------hhCCCcCCEEECCCCcCC-cchh---hhhcCCCCEEECcCC-cccccc---
Confidence 457778888776 455444321 122777888887776432 2221 336777777777775 355554
Q ss_pred cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794 84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC 163 (293)
Q Consensus 84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c 163 (293)
..++|+.|.++++. +..+. ...+++|+.|+++++. ++.+.... +..+++|++|+++++
T Consensus 97 -~~~~L~~L~l~~n~---------------l~~~~--~~~~~~L~~L~l~~N~-l~~~~~~~---~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 97 -VGPSIETLHAANNN---------------ISRVS--CSRGQGKKNIYLANNK-ITMLRDLD---EGCRSRVQYLDLKLN 154 (317)
T ss_dssp -ECTTCCEEECCSSC---------------CSEEE--ECCCSSCEEEECCSSC-CCSGGGBC---TGGGSSEEEEECTTS
T ss_pred -CCCCcCEEECCCCc---------------cCCcC--ccccCCCCEEECCCCC-CCCccchh---hhccCCCCEEECCCC
Confidence 23677777776550 11111 1235667777776643 34333222 445667777777766
Q ss_pred CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcc
Q 037794 164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLW 243 (293)
Q Consensus 164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~ 243 (293)
.... +.+......+++|++|++.++ .++.++... .+++|++|+++++ .++.++ ..+..+++|+
T Consensus 155 ~l~~-~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-----------~l~~L~~L~Ls~N-~l~~l~---~~~~~l~~L~ 217 (317)
T 3o53_A 155 EIDT-VNFAELAASSDTLEHLNLQYN-FIYDVKGQV-----------VFAKLKTLDLSSN-KLAFMG---PEFQSAAGVT 217 (317)
T ss_dssp CCCE-EEGGGGGGGTTTCCEEECTTS-CCCEEECCC-----------CCTTCCEEECCSS-CCCEEC---GGGGGGTTCS
T ss_pred CCCc-ccHHHHhhccCcCCEEECCCC-cCccccccc-----------ccccCCEEECCCC-cCCcch---hhhcccCccc
Confidence 4332 223333345677777777763 344442110 1366666666664 455543 2355566666
Q ss_pred eEeeecCCCccccccccc
Q 037794 244 SLTIENCPDMETFISNSV 261 (293)
Q Consensus 244 ~L~i~~C~~L~~l~p~~l 261 (293)
+|+++++ +++.+ |..+
T Consensus 218 ~L~L~~N-~l~~l-~~~~ 233 (317)
T 3o53_A 218 WISLRNN-KLVLI-EKAL 233 (317)
T ss_dssp EEECTTS-CCCEE-CTTC
T ss_pred EEECcCC-cccch-hhHh
Confidence 6666665 46555 5433
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.49 E-value=6.4e-14 Score=137.27 Aligned_cols=221 Identities=10% Similarity=0.080 Sum_probs=145.8
Q ss_pred CCCCCCcceEeccccccceE------------------eccccccccccccccccccceeeccccccccccccccccccC
Q 037794 1 VGIPNSLVNLNVSYCEKIEE------------------IIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEF 62 (293)
Q Consensus 1 ~g~l~~L~~L~l~~c~~l~~------------------i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 62 (293)
++++++|++|+++++. +.. +|...+. ..+++|+.|+++++.....+|.. ...+
T Consensus 444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f------~~L~~L~~L~Ls~N~l~~~iP~~--l~~L 514 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSW------SNLKDLTDVELYNCPNMTQLPDF--LYDL 514 (876)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCG------GGCTTCCEEEEESCTTCCSCCGG--GGGC
T ss_pred HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhh------ccCCCCCEEECcCCCCCccChHH--HhCC
Confidence 3578899999999975 444 5544330 03899999999998766767743 6689
Q ss_pred CCcceEeEcCCCCccc--cccCcc-------CCCCeeEEEeccccccccccccCccchhhhhhhhh--hhccCCCccEEE
Q 037794 63 PSLERVFVTRCPNMKT--FSQGIV-------STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYE--EMIGFRDIERLQ 131 (293)
Q Consensus 63 ~~L~~L~i~~c~~l~~--lp~~~~-------~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~ 131 (293)
++|+.|+++++..++. +|..+. .+++|+.|.++++ .+..++. .+..+++|+.|+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N---------------~L~~ip~~~~l~~L~~L~~L~ 579 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN---------------NLEEFPASASLQKMVKLGLLD 579 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS---------------CCCBCCCHHHHTTCTTCCEEE
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC---------------cCCccCChhhhhcCCCCCEEE
Confidence 9999999999864553 665433 4559999999876 1224454 567888999999
Q ss_pred ecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCC-CCeEEecCccccccccccccccc-------
Q 037794 132 LSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSN-LRWLEVRNCDSLEEVLHLEELNA------- 203 (293)
Q Consensus 132 l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~-L~~L~i~~c~~l~~i~~~~~~~~------- 203 (293)
++++. +..++ . +..+++|++|+++++... . +|.. +.++++ |+.|++.++. ++.++..-+...
T Consensus 580 Ls~N~-l~~lp--~---~~~L~~L~~L~Ls~N~l~-~-lp~~-l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 580 CVHNK-VRHLE--A---FGTNVKLTDLKLDYNQIE-E-IPED-FCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp CTTSC-CCBCC--C---CCTTSEESEEECCSSCCS-C-CCTT-SCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEE
T ss_pred CCCCC-cccch--h---hcCCCcceEEECcCCccc-c-chHH-HhhccccCCEEECcCCC-CCcCchhhhccccCCCCEE
Confidence 98864 44444 2 557788899999888754 3 4654 677888 9999888854 545542111000
Q ss_pred ------ccccCCC--------CCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccccccc
Q 037794 204 ------DKEHIGP--------LFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNS 260 (293)
Q Consensus 204 ------~~~~~~~--------~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~ 260 (293)
..+.... ..++|+.|+++++ .++.++. .....+++|+.|++++| +++.+ |.+
T Consensus 650 ~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~--~~~~~l~~L~~L~Ls~N-~L~~i-p~~ 715 (876)
T 4ecn_A 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPT--ELFATGSPISTIILSNN-LMTSI-PEN 715 (876)
T ss_dssp ECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCH--HHHHTTCCCSEEECCSC-CCSCC-CTT
T ss_pred ECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCH--HHHccCCCCCEEECCCC-cCCcc-ChH
Confidence 0000000 1137888888775 4555542 22347889999999987 68877 653
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.49 E-value=6.2e-13 Score=116.43 Aligned_cols=219 Identities=12% Similarity=0.141 Sum_probs=118.9
Q ss_pred CcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-ccCcc
Q 037794 6 SLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQGIV 84 (293)
Q Consensus 6 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~~~ 84 (293)
+++.++++++ .++.+|... .++++.|+++++. ++.++.. ....+++|++|+++++. ++.+ |..+.
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~----------~~~l~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 97 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDL----------PPDTALLDLQNNK-ITEIKDG-DFKNLKNLHTLILINNK-ISKISPGAFA 97 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSC----------CTTCCEEECCSSC-CCCBCTT-TTTTCTTCCEEECCSSC-CCCBCTTTTT
T ss_pred CCeEEEecCC-CccccCccC----------CCCCeEEECCCCc-CCEeChh-hhccCCCCCEEECCCCc-CCeeCHHHhc
Confidence 4666666654 455555432 4689999998874 5555442 24578999999999874 5544 67788
Q ss_pred CCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCC
Q 037794 85 STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCA 164 (293)
Q Consensus 85 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~ 164 (293)
.+++|+.|+++++. .. .++.. .+++|++|+++++. ++.++... +..+++|++|+++++.
T Consensus 98 ~l~~L~~L~Ls~n~-l~--------------~l~~~--~~~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 98 PLVKLERLYLSKNQ-LK--------------ELPEK--MPKTLQELRVHENE-ITKVRKSV---FNGLNQMIVVELGTNP 156 (330)
T ss_dssp TCTTCCEEECCSSC-CS--------------BCCSS--CCTTCCEEECCSSC-CCBBCHHH---HTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc-CC--------------ccChh--hcccccEEECCCCc-ccccCHhH---hcCCccccEEECCCCc
Confidence 89999999998761 11 11111 11445555554432 22222111 2234445555554443
Q ss_pred CCCccCChhHHhccCCCCeEEecCccccccccccc--c----------cccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794 165 NMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLE--E----------LNADKEHIGPLFPRLFILRLIDLPKLKRFCNF 232 (293)
Q Consensus 165 ~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~--~----------~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~ 232 (293)
....-.....+.++++|+.|++.++ .++.++... . +..........+++|++|++.++ .++.+..
T Consensus 157 l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~- 233 (330)
T 1xku_A 157 LKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDN- 233 (330)
T ss_dssp CCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECT-
T ss_pred CCccCcChhhccCCCCcCEEECCCC-ccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeCh-
Confidence 2211011122444444444444442 122221100 0 00000000012378889998885 5666543
Q ss_pred CCccccCCCcceEeeecCCCccccccccchhhc
Q 037794 233 TGNIIEMPMLWSLTIENCPDMETFISNSVLHVT 265 (293)
Q Consensus 233 ~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~ 265 (293)
..+..+++|++|++++| +++.+ |.++..+.
T Consensus 234 -~~~~~l~~L~~L~L~~N-~l~~l-p~~l~~l~ 263 (330)
T 1xku_A 234 -GSLANTPHLRELHLNNN-KLVKV-PGGLADHK 263 (330)
T ss_dssp -TTGGGSTTCCEEECCSS-CCSSC-CTTTTTCS
T ss_pred -hhccCCCCCCEEECCCC-cCccC-ChhhccCC
Confidence 46778899999999998 68888 87665544
No 40
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=3.8e-13 Score=116.94 Aligned_cols=193 Identities=19% Similarity=0.270 Sum_probs=140.0
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI 83 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~ 83 (293)
+++|++|++++| .++.++. . ..+++|+.|+++++. +..++. ...+++|+.|+++++. ++.++ .+
T Consensus 40 l~~L~~L~l~~~-~i~~l~~-~--------~~l~~L~~L~L~~n~-i~~~~~---~~~l~~L~~L~L~~n~-l~~~~-~~ 103 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTIEG-V--------QYLNNLIGLELKDNQ-ITDLAP---LKNLTKITELELSGNP-LKNVS-AI 103 (308)
T ss_dssp HHTCCEEECTTS-CCCCCTT-G--------GGCTTCCEEECCSSC-CCCCGG---GTTCCSCCEEECCSCC-CSCCG-GG
T ss_pred cCCcCEEEeeCC-CccCchh-h--------hccCCCCEEEccCCc-CCCChh---HccCCCCCEEEccCCc-CCCch-hh
Confidence 568899999887 5565542 2 238899999998873 444543 4578999999999874 66664 56
Q ss_pred cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794 84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC 163 (293)
Q Consensus 84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c 163 (293)
..+++|+.|++++| .+..+. .+..+++|+.|+++++. ++.++. +..+++|++|++++|
T Consensus 104 ~~l~~L~~L~l~~n---------------~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-----l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 104 AGLQSIKTLDLTST---------------QITDVT-PLAGLSNLQVLYLDLNQ-ITNISP-----LAGLTNLQYLSIGNA 161 (308)
T ss_dssp TTCTTCCEEECTTS---------------CCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-----GGGCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCC---------------CCCCch-hhcCCCCCCEEECCCCc-cCcCcc-----ccCCCCccEEEccCC
Confidence 78899999999877 111222 25778999999999864 444331 557799999999988
Q ss_pred CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcc
Q 037794 164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLW 243 (293)
Q Consensus 164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~ 243 (293)
. +.++ +. +..+++|+.|++.++ .++.++. .. .+++|++|++.++ .++.+. .+..+++|+
T Consensus 162 ~-l~~~-~~--l~~l~~L~~L~l~~n-~l~~~~~---l~--------~l~~L~~L~L~~N-~l~~~~----~l~~l~~L~ 220 (308)
T 1h6u_A 162 Q-VSDL-TP--LANLSKLTTLKADDN-KISDISP---LA--------SLPNLIEVHLKNN-QISDVS----PLANTSNLF 220 (308)
T ss_dssp C-CCCC-GG--GTTCTTCCEEECCSS-CCCCCGG---GG--------GCTTCCEEECTTS-CCCBCG----GGTTCTTCC
T ss_pred c-CCCC-hh--hcCCCCCCEEECCCC-ccCcChh---hc--------CCCCCCEEEccCC-ccCccc----cccCCCCCC
Confidence 5 4443 33 778999999999984 4555542 11 2489999999986 566653 477899999
Q ss_pred eEeeecCCCcccc
Q 037794 244 SLTIENCPDMETF 256 (293)
Q Consensus 244 ~L~i~~C~~L~~l 256 (293)
.|+++++ .++..
T Consensus 221 ~L~l~~N-~i~~~ 232 (308)
T 1h6u_A 221 IVTLTNQ-TITNQ 232 (308)
T ss_dssp EEEEEEE-EEECC
T ss_pred EEEccCC-eeecC
Confidence 9999997 47665
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=9.1e-13 Score=124.67 Aligned_cols=91 Identities=14% Similarity=0.082 Sum_probs=48.9
Q ss_pred CCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794 153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF 232 (293)
Q Consensus 153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~ 232 (293)
++|+.|++++|.... + ..+..+++|+.|++.++ .+..++. ..+. .+++|+.|++.++ .++.++
T Consensus 232 ~~L~~L~L~~n~l~~---~-~~l~~l~~L~~L~Ls~N-~l~~~~~-~~~~--------~l~~L~~L~Ls~N-~l~~l~-- 294 (597)
T 3oja_B 232 VELTILKLQHNNLTD---T-AWLLNYPGLVEVDLSYN-ELEKIMY-HPFV--------KMQRLERLYISNN-RLVALN-- 294 (597)
T ss_dssp SCCCEEECCSSCCCC---C-GGGGGCTTCSEEECCSS-CCCEEES-GGGT--------TCSSCCEEECTTS-CCCEEE--
T ss_pred CCCCEEECCCCCCCC---C-hhhccCCCCCEEECCCC-ccCCCCH-HHhc--------CccCCCEEECCCC-CCCCCC--
Confidence 456666666654332 2 23566777777777774 3333321 1111 1366777777663 455553
Q ss_pred CCccccCCCcceEeeecCCCccccccccchh
Q 037794 233 TGNIIEMPMLWSLTIENCPDMETFISNSVLH 263 (293)
Q Consensus 233 ~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~ 263 (293)
.....+++|+.|++++| +++.+ |.++..
T Consensus 295 -~~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~ 322 (597)
T 3oja_B 295 -LYGQPIPTLKVLDLSHN-HLLHV-ERNQPQ 322 (597)
T ss_dssp -CSSSCCTTCCEEECCSS-CCCCC-GGGHHH
T ss_pred -cccccCCCCcEEECCCC-CCCcc-Cccccc
Confidence 23345667777777766 46565 554443
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.48 E-value=1.9e-13 Score=128.15 Aligned_cols=181 Identities=18% Similarity=0.269 Sum_probs=114.5
Q ss_pred ccccceeeccccccccccc-cccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794 36 FNELKFLELDDLPRLTSFC-LENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI 114 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 114 (293)
+++|++|+++++.. .... .......+++|+.|++++|. +..+|..+..+++|+.|.+.+| .+
T Consensus 346 ~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n---------------~l 408 (570)
T 2z63_A 346 LPSLEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS---------------NL 408 (570)
T ss_dssp CTTCCEEECCSSCC-BEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTS---------------EE
T ss_pred CCCCCEEeCcCCcc-CccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCC---------------cc
Confidence 55555555555431 1111 01113356666666666653 4444444556667777776654 11
Q ss_pred hhhh--hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccc
Q 037794 115 QKRY--EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSL 192 (293)
Q Consensus 115 ~~l~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l 192 (293)
.... ..+..+++|++|+++++. +....... +..+++|++|++++|......+|. .+..+++|+.|++.+|. +
T Consensus 409 ~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~-l 482 (570)
T 2z63_A 409 KQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGI---FNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQ-L 482 (570)
T ss_dssp ESCTTSCTTTTCTTCCEEECTTSC-CEECCTTT---TTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC-C
T ss_pred ccccchhhhhcCCCCCEEeCcCCc-ccccchhh---hhcCCcCcEEECcCCcCccccchh-hhhcccCCCEEECCCCc-c
Confidence 1111 234678999999999975 44443333 567899999999999755333354 47889999999999964 4
Q ss_pred cccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCC
Q 037794 193 EEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP 251 (293)
Q Consensus 193 ~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~ 251 (293)
+.+.. ..+. .+++|++|++.++ .++.++. ..+..+++|++|++++++
T Consensus 483 ~~~~~-~~~~--------~l~~L~~L~l~~n-~l~~~~~--~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 483 EQLSP-TAFN--------SLSSLQVLNMASN-QLKSVPD--GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CEECT-TTTT--------TCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred ccCCh-hhhh--------cccCCCEEeCCCC-cCCCCCH--HHhhcccCCcEEEecCCc
Confidence 44421 2222 2389999999996 6777653 567889999999999864
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.48 E-value=7.5e-13 Score=121.31 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=41.8
Q ss_pred CCCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794 1 VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS 80 (293)
Q Consensus 1 ~g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp 80 (293)
++.+++|++|+++++ .++.++ .+ .+++|++|+++++ .+..++ ...+++|++|+++++ .++.++
T Consensus 81 ~~~l~~L~~L~Ls~N-~l~~~~--~~--------~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N-~l~~l~ 143 (457)
T 3bz5_A 81 LSQNTNLTYLACDSN-KLTNLD--VT--------PLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARN-TLTEID 143 (457)
T ss_dssp CTTCTTCSEEECCSS-CCSCCC--CT--------TCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTS-CCSCCC
T ss_pred cccCCCCCEEECcCC-CCceee--cC--------CCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCC-ccceec
Confidence 356777888888776 344443 11 2666777766665 233333 224556666666554 233332
Q ss_pred cCccCCCCeeEEEeccc
Q 037794 81 QGIVSTPKLHEVQVSKK 97 (293)
Q Consensus 81 ~~~~~~~~L~~L~l~~c 97 (293)
+..+++|+.|++++|
T Consensus 144 --l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 144 --VSHNTQLTELDCHLN 158 (457)
T ss_dssp --CTTCTTCCEEECTTC
T ss_pred --cccCCcCCEEECCCC
Confidence 344555555555544
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.47 E-value=5.1e-13 Score=118.15 Aligned_cols=224 Identities=15% Similarity=0.097 Sum_probs=124.7
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ 81 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~ 81 (293)
+.+++|++|+++++ .++.++... ...+++|++|+++++. +..++.. ....+++|++|+++++ .++.+|.
T Consensus 73 ~~l~~L~~L~L~~n-~l~~~~~~~-------~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~l~~ 141 (353)
T 2z80_A 73 QRCVNLQALVLTSN-GINTIEEDS-------FSSLGSLEHLDLSYNY-LSNLSSS-WFKPLSSLTFLNLLGN-PYKTLGE 141 (353)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTT-------TTTCTTCCEEECCSSC-CSSCCHH-HHTTCTTCSEEECTTC-CCSSSCS
T ss_pred ccCCCCCEEECCCC-ccCccCHhh-------cCCCCCCCEEECCCCc-CCcCCHh-HhCCCccCCEEECCCC-CCcccCc
Confidence 56788888888886 566665421 1125666666666542 2333321 1224556666666554 3444443
Q ss_pred --CccCCCCeeEEEeccccccccc---cccCc------c--chhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCC
Q 037794 82 --GIVSTPKLHEVQVSKKEEDELH---HWEGN------K--LNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALP 148 (293)
Q Consensus 82 --~~~~~~~L~~L~l~~c~~~~~~---~~~~~------~--~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 148 (293)
.+..+++|+.|+++++...... .+.+. + .+......+..+..+++|++|+++++. ++.++...
T Consensus 142 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~--- 217 (353)
T 2z80_A 142 TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIF--- 217 (353)
T ss_dssp SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHH---
T ss_pred hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhh---
Confidence 3445556666665554211110 00000 0 001111123455778999999999865 44333211
Q ss_pred cccCCCccEEEeccCCCCCccCCh--hHHhccCCCCeEEecCcccccc-----cccccccccccccCCCCCCcccEEecC
Q 037794 149 VSFFNNLFKLVVDDCANMSSAIPA--NLLRCLSNLRWLEVRNCDSLEE-----VLHLEELNADKEHIGPLFPRLFILRLI 221 (293)
Q Consensus 149 ~~~l~~L~~L~i~~c~~l~~~~p~--~~~~~l~~L~~L~i~~c~~l~~-----i~~~~~~~~~~~~~~~~f~~L~~L~l~ 221 (293)
...+++|++|+++++..-... +. ......+.++.+++.++. +.+ ++ +.+. .+++|++|+++
T Consensus 218 ~~~~~~L~~L~L~~n~l~~~~-~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~--~~l~--------~l~~L~~L~Ls 285 (353)
T 2z80_A 218 VDVTSSVECLELRDTDLDTFH-FSELSTGETNSLIKKFTFRNVK-ITDESLFQVM--KLLN--------QISGLLELEFS 285 (353)
T ss_dssp HHHTTTEEEEEEESCBCTTCC-CC------CCCCCCEEEEESCB-CCHHHHHHHH--HHHH--------TCTTCCEEECC
T ss_pred hhhcccccEEECCCCcccccc-ccccccccccchhhcccccccc-ccCcchhhhH--HHHh--------cccCCCEEECC
Confidence 334789999999998644321 11 123346778888888753 222 21 1111 24899999999
Q ss_pred CCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794 222 DLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 222 ~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
++ .++.++. ..+..+++|++|++++++ +..-
T Consensus 286 ~N-~l~~i~~--~~~~~l~~L~~L~L~~N~-~~~~ 316 (353)
T 2z80_A 286 RN-QLKSVPD--GIFDRLTSLQKIWLHTNP-WDCS 316 (353)
T ss_dssp SS-CCCCCCT--TTTTTCTTCCEEECCSSC-BCCC
T ss_pred CC-CCCccCH--HHHhcCCCCCEEEeeCCC-ccCc
Confidence 96 6777653 335789999999999985 4443
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.47 E-value=1.1e-12 Score=117.40 Aligned_cols=213 Identities=13% Similarity=0.118 Sum_probs=111.4
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-ccC
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQG 82 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~ 82 (293)
++++++|+++++ .++.+|...- ..+++|++|+++++. +..++.. ....+++|++|+++++. ++.+ |..
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~-------~~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~ 112 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALL-------DSFRQVELLNLNDLQ-IEEIDTY-AFAYAHTIQKLYMGFNA-IRYLPPHV 112 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHH-------HHCCCCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred cCCceEEEecCC-chhhCChhHh-------cccccCcEEECCCCc-ccccChh-hccCCCCcCEEECCCCC-CCcCCHHH
Confidence 467777887775 5666665421 126777788777763 3444332 13467777777777764 4433 344
Q ss_pred ccCCCCeeEEEeccccccccccccCccchhhhhhhhhh-hccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEec
Q 037794 83 IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEE-MIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVD 161 (293)
Q Consensus 83 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~ 161 (293)
+..+++|+.|+++++ .+..++.. +..+++|+.|+++++. +..+.... +..+++|++|+++
T Consensus 113 ~~~l~~L~~L~L~~n---------------~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 113 FQNVPLLTVLVLERN---------------DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDT---FQATTSLQNLQLS 173 (390)
T ss_dssp TTTCTTCCEEECCSS---------------CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTT---TSSCTTCCEEECC
T ss_pred hcCCCCCCEEECCCC---------------ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhh---ccCCCCCCEEECC
Confidence 567777777777765 11122222 2456666666666643 33333222 3455666666666
Q ss_pred cCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccc-----------------------------cccCCCCC
Q 037794 162 DCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNAD-----------------------------KEHIGPLF 212 (293)
Q Consensus 162 ~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~-----------------------------~~~~~~~f 212 (293)
++.... + + +..+++|+.|++.++ .++.+......... +......+
T Consensus 174 ~n~l~~-~-~---~~~l~~L~~L~l~~n-~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l 247 (390)
T 3o6n_A 174 SNRLTH-V-D---LSLIPSLFHANVSYN-LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY 247 (390)
T ss_dssp SSCCSB-C-C---GGGCTTCSEEECCSS-CCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGC
T ss_pred CCcCCc-c-c---cccccccceeecccc-cccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCC
Confidence 554222 1 2 233444444444432 12111100000000 00000123
Q ss_pred CcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794 213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
++|++|+++++ .++.+.. ..+..+++|++|++++| +++.+
T Consensus 248 ~~L~~L~Ls~n-~l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~ 287 (390)
T 3o6n_A 248 PGLVEVDLSYN-ELEKIMY--HPFVKMQRLERLYISNN-RLVAL 287 (390)
T ss_dssp TTCSEEECCSS-CCCEEES--GGGTTCSSCCEEECCSS-CCCEE
T ss_pred CCccEEECCCC-cCCCcCh--hHccccccCCEEECCCC-cCccc
Confidence 67777777775 4555432 55667788888888886 57776
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.47 E-value=7.6e-13 Score=116.01 Aligned_cols=207 Identities=16% Similarity=0.230 Sum_probs=111.7
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI 83 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~ 83 (293)
.++|++|+++++ .++.++... ...+++|++|+++++. +..+... ....+++|++|+++++ .++.+|...
T Consensus 53 ~~~l~~L~l~~n-~i~~~~~~~-------~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~l~~~~ 121 (332)
T 2ft3_A 53 SPDTTLLDLQNN-DISELRKDD-------FKGLQHLYALVLVNNK-ISKIHEK-AFSPLRKLQKLYISKN-HLVEIPPNL 121 (332)
T ss_dssp CTTCCEEECCSS-CCCEECTTT-------TTTCTTCCEEECCSSC-CCEECGG-GSTTCTTCCEEECCSS-CCCSCCSSC
T ss_pred CCCCeEEECCCC-cCCccCHhH-------hhCCCCCcEEECCCCc-cCccCHh-HhhCcCCCCEEECCCC-cCCccCccc
Confidence 356778888776 455555422 1226777777777653 3333221 1346677777777765 455555443
Q ss_pred cCCCCeeEEEeccccccccccccCccchhhhhhhhh-hhccCCCccEEEecCCCCceE--eccCC---------------
Q 037794 84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYE-EMIGFRDIERLQLSHFPRLKE--IWHGQ--------------- 145 (293)
Q Consensus 84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~--~~~~~--------------- 145 (293)
. ++|++|+++++. +..++. .+..+++|+.|+++++. ++. +....
T Consensus 122 ~--~~L~~L~l~~n~---------------i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~ 183 (332)
T 2ft3_A 122 P--SSLVELRIHDNR---------------IRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAK 183 (332)
T ss_dssp C--TTCCEEECCSSC---------------CCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSSB
T ss_pred c--ccCCEEECCCCc---------------cCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCCC
Confidence 3 667777766541 011111 12344455555554432 111 00000
Q ss_pred --CCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCC
Q 037794 146 --ALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDL 223 (293)
Q Consensus 146 --~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 223 (293)
.+|...+++|++|+++++... .+ +...+.++++|+.|++.++ .++.++. ..+. .+++|++|++.++
T Consensus 184 l~~l~~~~~~~L~~L~l~~n~i~-~~-~~~~l~~l~~L~~L~L~~N-~l~~~~~-~~~~--------~l~~L~~L~L~~N 251 (332)
T 2ft3_A 184 LTGIPKDLPETLNELHLDHNKIQ-AI-ELEDLLRYSKLYRLGLGHN-QIRMIEN-GSLS--------FLPTLRELHLDNN 251 (332)
T ss_dssp CSSCCSSSCSSCSCCBCCSSCCC-CC-CTTSSTTCTTCSCCBCCSS-CCCCCCT-TGGG--------GCTTCCEEECCSS
T ss_pred CCccCccccCCCCEEECCCCcCC-cc-CHHHhcCCCCCCEEECCCC-cCCcCCh-hHhh--------CCCCCCEEECCCC
Confidence 012222356777777666433 22 3334666777777777773 3444331 1111 2378888888875
Q ss_pred CCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794 224 PKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 224 ~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
.++.++ ..+..+++|++|+++++ +++.+
T Consensus 252 -~l~~lp---~~l~~l~~L~~L~l~~N-~l~~~ 279 (332)
T 2ft3_A 252 -KLSRVP---AGLPDLKLLQVVYLHTN-NITKV 279 (332)
T ss_dssp -CCCBCC---TTGGGCTTCCEEECCSS-CCCBC
T ss_pred -cCeecC---hhhhcCccCCEEECCCC-CCCcc
Confidence 566554 45777888888888886 57776
No 47
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.47 E-value=3.5e-13 Score=114.95 Aligned_cols=10 Identities=30% Similarity=0.285 Sum_probs=6.3
Q ss_pred ccccchhhcc
Q 037794 257 ISNSVLHVTT 266 (293)
Q Consensus 257 ~p~~l~~l~~ 266 (293)
+|.+++.+..
T Consensus 238 ip~~~~~~~~ 247 (272)
T 3rfs_A 238 VRNSAGSVAP 247 (272)
T ss_dssp BBCTTSCBCG
T ss_pred ccCcccccCC
Confidence 4666666655
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=3.9e-13 Score=124.16 Aligned_cols=203 Identities=12% Similarity=0.078 Sum_probs=119.2
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI 83 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~ 83 (293)
+++|++|+++++ .+..+++.. ...+++|++|+++++..-...+ ...+++|+.|++++| .++.+|.
T Consensus 33 ~~~L~~L~Ls~n-~l~~~~~~~-------~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N-~l~~l~~-- 97 (487)
T 3oja_A 33 AWNVKELDLSGN-PLSQISAAD-------LAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNN-YVQELLV-- 97 (487)
T ss_dssp GGGCCEEECCSS-CCCCCCGGG-------GTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSS-EEEEEEE--
T ss_pred CCCccEEEeeCC-cCCCCCHHH-------HhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCC-cCCCCCC--
Confidence 347888888886 555554321 2237888888888875322222 346788888888876 4665552
Q ss_pred cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794 84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC 163 (293)
Q Consensus 84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c 163 (293)
.++|+.|++++|. +..+.. ..+++|+.|+++++. ++.+.... +..+++|++|+++++
T Consensus 98 --~~~L~~L~L~~N~---------------l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 98 --GPSIETLHAANNN---------------ISRVSC--SRGQGKKNIYLANNK-ITMLRDLD---EGCRSRVQYLDLKLN 154 (487)
T ss_dssp --CTTCCEEECCSSC---------------CCCEEE--CCCSSCEEEECCSSC-CCSGGGBC---GGGGSSEEEEECTTS
T ss_pred --CCCcCEEECcCCc---------------CCCCCc--cccCCCCEEECCCCC-CCCCCchh---hcCCCCCCEEECCCC
Confidence 2778888887661 111111 235677777777654 34332222 455677777777776
Q ss_pred CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcc
Q 037794 164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLW 243 (293)
Q Consensus 164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~ 243 (293)
.... ..|......+++|+.|++.++ .++.++.. ..+++|++|+++++ .++.++ ..+..+++|+
T Consensus 155 ~l~~-~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~-----------~~l~~L~~L~Ls~N-~l~~~~---~~~~~l~~L~ 217 (487)
T 3oja_A 155 EIDT-VNFAELAASSDTLEHLNLQYN-FIYDVKGQ-----------VVFAKLKTLDLSSN-KLAFMG---PEFQSAAGVT 217 (487)
T ss_dssp CCCE-EEGGGGGGGTTTCCEEECTTS-CCCEEECC-----------CCCTTCCEEECCSS-CCCEEC---GGGGGGTTCS
T ss_pred CCCC-cChHHHhhhCCcccEEecCCC-cccccccc-----------ccCCCCCEEECCCC-CCCCCC---HhHcCCCCcc
Confidence 5433 224443346777777777774 34444311 02367777777764 455554 3456667777
Q ss_pred eEeeecCCCccccccccchh
Q 037794 244 SLTIENCPDMETFISNSVLH 263 (293)
Q Consensus 244 ~L~i~~C~~L~~l~p~~l~~ 263 (293)
.|+++++ +++.+ |..++.
T Consensus 218 ~L~Ls~N-~l~~l-p~~l~~ 235 (487)
T 3oja_A 218 WISLRNN-KLVLI-EKALRF 235 (487)
T ss_dssp EEECTTS-CCCEE-CTTCCC
T ss_pred EEEecCC-cCccc-chhhcc
Confidence 7777775 56665 654433
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=9.7e-13 Score=128.94 Aligned_cols=246 Identities=10% Similarity=0.014 Sum_probs=114.8
Q ss_pred CCCCCcceEeccccccceE--eccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc
Q 037794 2 GIPNSLVNLNVSYCEKIEE--IIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF 79 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~--i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l 79 (293)
+.+++|++|+++++..+.. +|...+.- ......+++|+.|+++++. +..++.......+++|+.|+++++. +..+
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L-~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~l 588 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRL-ADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHL 588 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHH-HHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBC
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhh-hhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccc
Confidence 4567777888877753442 44322110 0011124466666666653 2344431114456666666666653 3355
Q ss_pred ccCccCCCCeeEEEecccccccccc--ccCc-------cc-hhhhhhhhhhhccC--CCccEEEecCCCCceEecc--CC
Q 037794 80 SQGIVSTPKLHEVQVSKKEEDELHH--WEGN-------KL-NSTIQKRYEEMIGF--RDIERLQLSHFPRLKEIWH--GQ 145 (293)
Q Consensus 80 p~~~~~~~~L~~L~l~~c~~~~~~~--~~~~-------~~-~~~~~~l~~~~~~~--~~L~~L~l~~~~~l~~~~~--~~ 145 (293)
| .+..+++|+.|.++++.-. ... +.+. .+ +..+..++..+... ++|+.|+++++.-...++. ..
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 5 5555666666666654100 000 0000 00 00011122212222 2355666555432111110 00
Q ss_pred CCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCC
Q 037794 146 ALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPK 225 (293)
Q Consensus 146 ~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~ 225 (293)
......++|+.|++++|... . +|...+..+++|+.|++.++ .++.++... ...... ...-+++|++|+++++ +
T Consensus 667 -l~~~~~~~L~~L~Ls~N~L~-~-lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~-~~~~~~-~l~nl~~L~~L~Ls~N-~ 739 (876)
T 4ecn_A 667 -MDDYKGINASTVTLSYNEIQ-K-FPTELFATGSPISTIILSNN-LMTSIPENS-LKPKDG-NYKNTYLLTTIDLRFN-K 739 (876)
T ss_dssp -TTTCCCCCEEEEECCSSCCC-S-CCHHHHHTTCCCSEEECCSC-CCSCCCTTS-SSCTTS-CCTTGGGCCEEECCSS-C
T ss_pred -hccccCCCcCEEEccCCcCC-c-cCHHHHccCCCCCEEECCCC-cCCccChHH-hccccc-cccccCCccEEECCCC-C
Confidence 00112347888888877644 3 47776777888888888884 455554211 000000 0000136666666664 4
Q ss_pred CceeccCCCccc--cCCCcceEeeecCCCccccccccchhh
Q 037794 226 LKRFCNFTGNII--EMPMLWSLTIENCPDMETFISNSVLHV 264 (293)
Q Consensus 226 l~~~~~~~~~~~--~l~~L~~L~i~~C~~L~~l~p~~l~~l 264 (293)
++.++ ..+. .+++|+.|++++| +++.+ |.++..+
T Consensus 740 L~~lp---~~l~~~~l~~L~~L~Ls~N-~L~~l-p~~l~~L 775 (876)
T 4ecn_A 740 LTSLS---DDFRATTLPYLSNMDVSYN-CFSSF-PTQPLNS 775 (876)
T ss_dssp CCCCC---GGGSTTTCTTCCEEECCSS-CCSSC-CCGGGGC
T ss_pred Cccch---HHhhhccCCCcCEEEeCCC-CCCcc-chhhhcC
Confidence 54443 3333 5666666666665 45555 5444433
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.46 E-value=1.7e-12 Score=119.05 Aligned_cols=209 Identities=14% Similarity=0.231 Sum_probs=97.9
Q ss_pred CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC
Q 037794 3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG 82 (293)
Q Consensus 3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~ 82 (293)
.+++|++|++++| .++.++. .. .+++|++|+++++. +...+. ...+++|++|++++| .++.++.
T Consensus 66 ~l~~L~~L~Ls~n-~l~~~~~-~~--------~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~- 129 (466)
T 1o6v_A 66 YLNNLTQINFSNN-QLTDITP-LK--------NLTKLVDILMNNNQ-IADITP---LANLTNLTGLTLFNN-QITDIDP- 129 (466)
T ss_dssp GCTTCCEEECCSS-CCCCCGG-GT--------TCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCCCGG-
T ss_pred hhcCCCEEECCCC-ccCCchh-hh--------ccccCCEEECCCCc-cccChh---hcCCCCCCEEECCCC-CCCCChH-
Confidence 3455555665554 3444332 11 25566666665543 222221 335666666666665 3444433
Q ss_pred ccCCCCeeEEEeccccccccccccCc------cchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCcc
Q 037794 83 IVSTPKLHEVQVSKKEEDELHHWEGN------KLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLF 156 (293)
Q Consensus 83 ~~~~~~L~~L~l~~c~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 156 (293)
+..+++|+.|++++|.-.....+.+. .+......+ ..+..+++|+.|+++++. +..++ .+..+++|+
T Consensus 130 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-----~l~~l~~L~ 202 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL-KPLANLTTLERLDISSNK-VSDIS-----VLAKLTNLE 202 (466)
T ss_dssp GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC-GGGTTCTTCCEEECCSSC-CCCCG-----GGGGCTTCS
T ss_pred HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCc-hhhccCCCCCEEECcCCc-CCCCh-----hhccCCCCC
Confidence 55666666666665511000000000 000000000 113344555555555533 22221 133445566
Q ss_pred EEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCcc
Q 037794 157 KLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNI 236 (293)
Q Consensus 157 ~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~ 236 (293)
+|++++|.... . +. +..+++|++|++.+| .++.+.. +. .+++|++|++.++ .++.+ ..+
T Consensus 203 ~L~l~~n~l~~-~-~~--~~~l~~L~~L~l~~n-~l~~~~~---l~--------~l~~L~~L~l~~n-~l~~~----~~~ 261 (466)
T 1o6v_A 203 SLIATNNQISD-I-TP--LGILTNLDELSLNGN-QLKDIGT---LA--------SLTNLTDLDLANN-QISNL----APL 261 (466)
T ss_dssp EEECCSSCCCC-C-GG--GGGCTTCCEEECCSS-CCCCCGG---GG--------GCTTCSEEECCSS-CCCCC----GGG
T ss_pred EEEecCCcccc-c-cc--ccccCCCCEEECCCC-Ccccchh---hh--------cCCCCCEEECCCC-ccccc----hhh
Confidence 66665554222 1 11 344566666666653 2333211 11 2377777777775 34443 235
Q ss_pred ccCCCcceEeeecCCCcccc
Q 037794 237 IEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 237 ~~l~~L~~L~i~~C~~L~~l 256 (293)
..+++|++|++++| +++.+
T Consensus 262 ~~l~~L~~L~l~~n-~l~~~ 280 (466)
T 1o6v_A 262 SGLTKLTELKLGAN-QISNI 280 (466)
T ss_dssp TTCTTCSEEECCSS-CCCCC
T ss_pred hcCCCCCEEECCCC-ccCcc
Confidence 67788888888877 56665
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.46 E-value=1.4e-13 Score=128.67 Aligned_cols=35 Identities=14% Similarity=0.364 Sum_probs=20.8
Q ss_pred CccEEEeccCCCCCccCChhHHhccCCCCeEEecCcc
Q 037794 154 NLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCD 190 (293)
Q Consensus 154 ~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~ 190 (293)
+|++|+++++. +.. +|...++.+++|++|++.++.
T Consensus 311 ~L~~L~l~~n~-l~~-ip~~~~~~l~~L~~L~Ls~N~ 345 (549)
T 2z81_A 311 KVKRITVENSK-VFL-VPCSFSQHLKSLEFLDLSENL 345 (549)
T ss_dssp TCCEEEEESSC-CCC-CCHHHHHHCTTCCEEECCSSC
T ss_pred cceEEEeccCc-ccc-CCHHHHhcCccccEEEccCCc
Confidence 34455554443 232 366555678888888888754
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.45 E-value=1.1e-12 Score=112.44 Aligned_cols=184 Identities=18% Similarity=0.142 Sum_probs=132.1
Q ss_pred CCCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794 1 VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS 80 (293)
Q Consensus 1 ~g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp 80 (293)
++.+++|++|+++++ .++.+.... ...+++|++|+++++..+..+... ....+++|++|+++++.--...|
T Consensus 52 ~~~~~~L~~L~l~~n-~l~~~~~~~-------~~~l~~L~~L~l~~n~~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~ 122 (285)
T 1ozn_A 52 FRACRNLTILWLHSN-VLARIDAAA-------FTGLALLEQLDLSDNAQLRSVDPA-TFHGLGRLHTLHLDRCGLQELGP 122 (285)
T ss_dssp TTTCTTCCEEECCSS-CCCEECTTT-------TTTCTTCCEEECCSCTTCCCCCTT-TTTTCTTCCEEECTTSCCCCCCT
T ss_pred cccCCCCCEEECCCC-ccceeCHhh-------cCCccCCCEEeCCCCCCccccCHH-HhcCCcCCCEEECCCCcCCEECH
Confidence 357899999999997 666664332 223899999999998767666433 24578999999999975333335
Q ss_pred cCccCCCCeeEEEeccccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEE
Q 037794 81 QGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLV 159 (293)
Q Consensus 81 ~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 159 (293)
..+..+++|+.|.++++ .+..+. ..+..+++|+.|+++++ .++.++... +..+++|++|+
T Consensus 123 ~~~~~l~~L~~L~l~~n---------------~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~ 183 (285)
T 1ozn_A 123 GLFRGLAALQYLYLQDN---------------ALQALPDDTFRDLGNLTHLFLHGN-RISSVPERA---FRGLHSLDRLL 183 (285)
T ss_dssp TTTTTCTTCCEEECCSS---------------CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTT---TTTCTTCCEEE
T ss_pred hHhhCCcCCCEEECCCC---------------cccccCHhHhccCCCccEEECCCC-cccccCHHH---hcCccccCEEE
Confidence 66788999999999976 111222 22467899999999985 477766544 55789999999
Q ss_pred eccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCC
Q 037794 160 VDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLP 224 (293)
Q Consensus 160 i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 224 (293)
++++.. ....+ ..+.++++|+.|++.++ .++.++. +.+. .+++|++|++.+.+
T Consensus 184 l~~n~l-~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~--------~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 184 LHQNRV-AHVHP-HAFRDLGRLMTLYLFAN-NLSALPT-EALA--------PLRALQYLRLNDNP 236 (285)
T ss_dssp CCSSCC-CEECT-TTTTTCTTCCEEECCSS-CCSCCCH-HHHT--------TCTTCCEEECCSSC
T ss_pred CCCCcc-cccCH-hHccCcccccEeeCCCC-cCCcCCH-HHcc--------cCcccCEEeccCCC
Confidence 999874 44334 34788999999999995 5555542 1122 24899999999864
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.45 E-value=4.3e-13 Score=116.71 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=7.6
Q ss_pred CCcceEeeecCCCcccc
Q 037794 240 PMLWSLTIENCPDMETF 256 (293)
Q Consensus 240 ~~L~~L~i~~C~~L~~l 256 (293)
++|++|+++++ +++.+
T Consensus 274 ~~L~~L~Ls~N-~l~~~ 289 (312)
T 1wwl_A 274 AKLSVLDLSYN-RLDRN 289 (312)
T ss_dssp SEEEEEECCSS-CCCSC
T ss_pred CCceEEECCCC-CCCCC
Confidence 44555555544 34444
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.44 E-value=3.7e-12 Score=122.08 Aligned_cols=37 Identities=14% Similarity=-0.006 Sum_probs=23.2
Q ss_pred cCCCcceEeEcCCCCccccccCccCCCCeeEEEeccc
Q 037794 61 EFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKK 97 (293)
Q Consensus 61 ~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c 97 (293)
.+++|++|+++++.--...+..+..+++|+.|++++|
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 5667777777765432233344567777888877765
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=2.1e-12 Score=122.12 Aligned_cols=90 Identities=16% Similarity=0.116 Sum_probs=64.0
Q ss_pred cccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCce
Q 037794 149 VSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKR 228 (293)
Q Consensus 149 ~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~ 228 (293)
+..+++|++|+++++.... ..|. .+..+++|+.|++.+ ..++.++... ..+++|+.|+++++ .++.
T Consensus 250 l~~l~~L~~L~Ls~N~l~~-~~~~-~~~~l~~L~~L~Ls~-N~l~~l~~~~----------~~l~~L~~L~Ls~N-~l~~ 315 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEK-IMYH-PFVKMQRLERLYISN-NRLVALNLYG----------QPIPTLKVLDLSHN-HLLH 315 (597)
T ss_dssp GGGCTTCSEEECCSSCCCE-EESG-GGTTCSSCCEEECTT-SCCCEEECSS----------SCCTTCCEEECCSS-CCCC
T ss_pred hccCCCCCEEECCCCccCC-CCHH-HhcCccCCCEEECCC-CCCCCCCccc----------ccCCCCcEEECCCC-CCCc
Confidence 4567899999999886444 3344 478899999999998 4565554211 12488999999886 4655
Q ss_pred eccCCCccccCCCcceEeeecCCCcccc
Q 037794 229 FCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 229 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
++ ..+..+++|+.|++++| +++.+
T Consensus 316 i~---~~~~~l~~L~~L~L~~N-~l~~~ 339 (597)
T 3oja_B 316 VE---RNQPQFDRLENLYLDHN-SIVTL 339 (597)
T ss_dssp CG---GGHHHHTTCSEEECCSS-CCCCC
T ss_pred cC---cccccCCCCCEEECCCC-CCCCc
Confidence 54 45677888888888887 46665
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.44 E-value=1e-12 Score=115.18 Aligned_cols=218 Identities=13% Similarity=0.186 Sum_probs=127.3
Q ss_pred CcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-ccCcc
Q 037794 6 SLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQGIV 84 (293)
Q Consensus 6 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~~~ 84 (293)
+++.++++++ .++.+|... .++|+.|+++++. +..++.. ....+++|++|++++|. ++.+ |..+.
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~----------~~~l~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 99 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI----------SPDTTLLDLQNND-ISELRKD-DFKGLQHLYALVLVNNK-ISKIHEKAFS 99 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC----------CTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSC-CCEECGGGST
T ss_pred cCCEEECCCC-CccccCCCC----------CCCCeEEECCCCc-CCccCHh-HhhCCCCCcEEECCCCc-cCccCHhHhh
Confidence 4566666654 455555432 4678888887764 4444332 14567888888888764 4444 56667
Q ss_pred CCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCC
Q 037794 85 STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCA 164 (293)
Q Consensus 85 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~ 164 (293)
.+++|+.|+++++ .+..++... +++|++|+++++. ++.++... +..+++|++|+++++.
T Consensus 100 ~l~~L~~L~L~~n---------------~l~~l~~~~--~~~L~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 100 PLRKLQKLYISKN---------------HLVEIPPNL--PSSLVELRIHDNR-IRKVPKGV---FSGLRNMNCIEMGGNP 158 (332)
T ss_dssp TCTTCCEEECCSS---------------CCCSCCSSC--CTTCCEEECCSSC-CCCCCSGG---GSSCSSCCEEECCSCC
T ss_pred CcCCCCEEECCCC---------------cCCccCccc--cccCCEEECCCCc-cCccCHhH---hCCCccCCEEECCCCc
Confidence 7888888888765 111222221 2688888887753 45444332 4567888888888776
Q ss_pred CCCccCChhHHhccCCCCeEEecCccccccccccc--cccc-------ccc---cCCCCCCcccEEecCCCCCCceeccC
Q 037794 165 NMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLE--ELNA-------DKE---HIGPLFPRLFILRLIDLPKLKRFCNF 232 (293)
Q Consensus 165 ~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~--~~~~-------~~~---~~~~~f~~L~~L~l~~~~~l~~~~~~ 232 (293)
.-..-+....+..+ +|+.|++.++ .++.++..- .... ... .....+++|++|++.++ .++.+..
T Consensus 159 l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~- 234 (332)
T 2ft3_A 159 LENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIEN- 234 (332)
T ss_dssp CBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCT-
T ss_pred cccCCCCcccccCC-ccCEEECcCC-CCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCCh-
Confidence 43211122334444 7777777763 233333100 0000 000 01112378888888875 5665543
Q ss_pred CCccccCCCcceEeeecCCCccccccccchhhc
Q 037794 233 TGNIIEMPMLWSLTIENCPDMETFISNSVLHVT 265 (293)
Q Consensus 233 ~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~ 265 (293)
..+..+++|++|++++| +++.+ |.+++.+.
T Consensus 235 -~~~~~l~~L~~L~L~~N-~l~~l-p~~l~~l~ 264 (332)
T 2ft3_A 235 -GSLSFLPTLRELHLDNN-KLSRV-PAGLPDLK 264 (332)
T ss_dssp -TGGGGCTTCCEEECCSS-CCCBC-CTTGGGCT
T ss_pred -hHhhCCCCCCEEECCCC-cCeec-ChhhhcCc
Confidence 46778899999999998 68888 87766554
No 57
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.44 E-value=3.6e-12 Score=116.97 Aligned_cols=196 Identities=17% Similarity=0.244 Sum_probs=124.0
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ 81 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~ 81 (293)
+.+++|++|++++| .+..++. .. .+++|++|+++++. +..++. ...+++|++|++++|. +..++.
T Consensus 87 ~~l~~L~~L~l~~n-~l~~~~~-~~--------~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~ 151 (466)
T 1o6v_A 87 KNLTKLVDILMNNN-QIADITP-LA--------NLTNLTGLTLFNNQ-ITDIDP---LKNLTNLNRLELSSNT-ISDISA 151 (466)
T ss_dssp TTCTTCCEEECCSS-CCCCCGG-GT--------TCTTCCEEECCSSC-CCCCGG---GTTCTTCSEEEEEEEE-ECCCGG
T ss_pred hccccCCEEECCCC-ccccChh-hc--------CCCCCCEEECCCCC-CCCChH---HcCCCCCCEEECCCCc-cCCChh
Confidence 56777888888776 4444443 11 26667777776652 333322 3356666666666542 333321
Q ss_pred --------------------CccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEe
Q 037794 82 --------------------GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEI 141 (293)
Q Consensus 82 --------------------~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 141 (293)
.+..+++|+.|++++| .+..+ ..+..+++|+.|+++++. +..+
T Consensus 152 ~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n---------------~l~~~-~~l~~l~~L~~L~l~~n~-l~~~ 214 (466)
T 1o6v_A 152 LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN---------------KVSDI-SVLAKLTNLESLIATNNQ-ISDI 214 (466)
T ss_dssp GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS---------------CCCCC-GGGGGCTTCSEEECCSSC-CCCC
T ss_pred hccCCcccEeecCCcccCchhhccCCCCCEEECcCC---------------cCCCC-hhhccCCCCCEEEecCCc-cccc
Confidence 1334455555555544 01111 235678999999999865 3332
Q ss_pred ccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecC
Q 037794 142 WHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLI 221 (293)
Q Consensus 142 ~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~ 221 (293)
. +...+++|++|++++|.. .++ + .+..+++|+.|++.+|. +..++. .. .+++|++|++.
T Consensus 215 ~-----~~~~l~~L~~L~l~~n~l-~~~-~--~l~~l~~L~~L~l~~n~-l~~~~~---~~--------~l~~L~~L~l~ 273 (466)
T 1o6v_A 215 T-----PLGILTNLDELSLNGNQL-KDI-G--TLASLTNLTDLDLANNQ-ISNLAP---LS--------GLTKLTELKLG 273 (466)
T ss_dssp G-----GGGGCTTCCEEECCSSCC-CCC-G--GGGGCTTCSEEECCSSC-CCCCGG---GT--------TCTTCSEEECC
T ss_pred c-----cccccCCCCEEECCCCCc-ccc-h--hhhcCCCCCEEECCCCc-cccchh---hh--------cCCCCCEEECC
Confidence 2 255679999999999864 332 3 37789999999999964 444332 11 34999999999
Q ss_pred CCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794 222 DLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 222 ~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
++ .++.+. .+..+++|++|++++| +++.+
T Consensus 274 ~n-~l~~~~----~~~~l~~L~~L~L~~n-~l~~~ 302 (466)
T 1o6v_A 274 AN-QISNIS----PLAGLTALTNLELNEN-QLEDI 302 (466)
T ss_dssp SS-CCCCCG----GGTTCTTCSEEECCSS-CCSCC
T ss_pred CC-ccCccc----cccCCCccCeEEcCCC-cccCc
Confidence 86 566552 3678999999999998 67777
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.43 E-value=1.4e-12 Score=125.01 Aligned_cols=212 Identities=16% Similarity=0.144 Sum_probs=107.2
Q ss_pred CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCcc
Q 037794 5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIV 84 (293)
Q Consensus 5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~ 84 (293)
++|++|++++| .+..++... ...+++|+.|+++++.....++.. ....+++|+.|++++|......+..+.
T Consensus 381 ~~L~~L~L~~n-~l~~~~~~~-------~~~l~~L~~L~L~~N~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 451 (680)
T 1ziw_A 381 SPLHILNLTKN-KISKIESDA-------FSWLGHLEVLDLGLNEIGQELTGQ-EWRGLENIFEIYLSYNKYLQLTRNSFA 451 (680)
T ss_dssp SCCCEEECTTS-CCCEECTTT-------TTTCTTCCEEECCSSCCEEECCSG-GGTTCTTCCEEECCSCSEEECCTTTTT
T ss_pred CcCceEECCCC-CCCeEChhh-------hhCCCCCCEEeCCCCcCccccCcc-cccCcccccEEecCCCCcceeChhhhh
Confidence 57888888887 455544322 122778888888776543333321 234677788888877653323334556
Q ss_pred CCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCC
Q 037794 85 STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCA 164 (293)
Q Consensus 85 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~ 164 (293)
.+++|+.|.+.++.- ......+..+..+++|+.|+++++. ++.++... +..+++|++|+++++.
T Consensus 452 ~~~~L~~L~l~~n~l------------~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~---~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 452 LVPSLQRLMLRRVAL------------KNVDSSPSPFQPLRNLTILDLSNNN-IANINDDM---LEGLEKLEILDLQHNN 515 (680)
T ss_dssp TCTTCCEEECTTSCC------------BCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSC
T ss_pred cCcccccchhccccc------------cccccCCcccccCCCCCEEECCCCC-CCcCChhh---hccccccCEEeCCCCC
Confidence 677777777776510 0011222333455666666666532 44333322 3345566666665554
Q ss_pred CCCccC-------ChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccc
Q 037794 165 NMSSAI-------PANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNII 237 (293)
Q Consensus 165 ~l~~~~-------p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~ 237 (293)
.. .+. +...+.++++|+.|++.++ .++.++. +.+.. + ++|+.|++++ .+++.++. ..+.
T Consensus 516 l~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~-~~~~~-------l-~~L~~L~Ls~-N~l~~l~~--~~~~ 581 (680)
T 1ziw_A 516 LA-RLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV-EVFKD-------L-FELKIIDLGL-NNLNTLPA--SVFN 581 (680)
T ss_dssp CG-GGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT-TTTTT-------C-TTCCEEECCS-SCCCCCCT--TTTT
T ss_pred cc-ccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH-HHccc-------c-cCcceeECCC-CCCCcCCH--hHhC
Confidence 22 110 1112445566666666652 3443331 11111 2 5555555544 24444432 3334
Q ss_pred cCCCcceEeeecCCCcccc
Q 037794 238 EMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 238 ~l~~L~~L~i~~C~~L~~l 256 (293)
.+++|+.|+++++ +++.+
T Consensus 582 ~l~~L~~L~L~~N-~l~~~ 599 (680)
T 1ziw_A 582 NQVSLKSLNLQKN-LITSV 599 (680)
T ss_dssp TCTTCCEEECTTS-CCCBC
T ss_pred CCCCCCEEECCCC-cCCcc
Confidence 5555555555554 45554
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.43 E-value=1.2e-12 Score=119.96 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=48.6
Q ss_pred CCCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794 1 VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS 80 (293)
Q Consensus 1 ~g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp 80 (293)
++.+++|++|+++++ .++.++ .+ .+++|++|+++++. ++.++ ...+++|+.|++++|..++.++
T Consensus 102 ~~~l~~L~~L~L~~N-~l~~l~--~~--------~l~~L~~L~l~~N~-l~~l~----l~~l~~L~~L~l~~n~~~~~~~ 165 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTN-KLTKLD--VS--------QNPLLTYLNCARNT-LTEID----VSHNTQLTELDCHLNKKITKLD 165 (457)
T ss_dssp CTTCTTCCEEECCSS-CCSCCC--CT--------TCTTCCEEECTTSC-CSCCC----CTTCTTCCEEECTTCSCCCCCC
T ss_pred cCCCCcCCEEECCCC-cCCeec--CC--------CCCcCCEEECCCCc-cceec----cccCCcCCEEECCCCCcccccc
Confidence 467888999999887 555554 11 26777777776653 33333 2256667777776665555442
Q ss_pred cCccCCCCeeEEEeccc
Q 037794 81 QGIVSTPKLHEVQVSKK 97 (293)
Q Consensus 81 ~~~~~~~~L~~L~l~~c 97 (293)
+..+++|+.|+++++
T Consensus 166 --~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 166 --VTPQTQLTTLDCSFN 180 (457)
T ss_dssp --CTTCTTCCEEECCSS
T ss_pred --cccCCcCCEEECCCC
Confidence 445666666666654
No 60
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.42 E-value=7.9e-12 Score=122.85 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=48.7
Q ss_pred ccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCcee
Q 037794 150 SFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRF 229 (293)
Q Consensus 150 ~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~ 229 (293)
..+++|+.|+++++... .+ +...+.++++|++|++.++ .++.+.. ..+. .+++|++|++.++ .++.+
T Consensus 287 ~~l~~L~~L~L~~n~i~-~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~--------~l~~L~~L~L~~N-~i~~~ 353 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKIN-KI-ADEAFYGLDNLQVLNLSYN-LLGELYS-SNFY--------GLPKVAYIDLQKN-HIAII 353 (844)
T ss_dssp SSCCCCCEEEEESCCCC-EE-CTTTTTTCSSCCEEEEESC-CCSCCCS-CSCS--------SCTTCCEEECCSC-CCCCC
T ss_pred hcCCCCCEEECCCCcCC-CC-ChHHhcCCCCCCEEECCCC-CCCccCH-HHhc--------CCCCCCEEECCCC-CCCcc
Confidence 34566666666655432 22 2233555666666666663 2333211 1111 2367777777775 45555
Q ss_pred ccCCCccccCCCcceEeeecCCCcccc
Q 037794 230 CNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 230 ~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
.. ..+..+++|++|+++++ +++.+
T Consensus 354 ~~--~~~~~l~~L~~L~Ls~N-~l~~i 377 (844)
T 3j0a_A 354 QD--QTFKFLEKLQTLDLRDN-ALTTI 377 (844)
T ss_dssp CS--SCSCSCCCCCEEEEETC-CSCCC
T ss_pred Ch--hhhcCCCCCCEEECCCC-CCCcc
Confidence 43 44566777777777775 45544
No 61
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.41 E-value=4.3e-12 Score=119.11 Aligned_cols=126 Identities=12% Similarity=0.131 Sum_probs=73.6
Q ss_pred ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCCh--hHHhccCCCCeEEecCcccccc-cccc
Q 037794 122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPA--NLLRCLSNLRWLEVRNCDSLEE-VLHL 198 (293)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~--~~~~~l~~L~~L~i~~c~~l~~-i~~~ 198 (293)
..+++|++|+++++. +....... +..+++|++|+++++. ++.+ +. ..+.++++|++|++.++. ++. ++..
T Consensus 350 ~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~L~~N~-l~~~-~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~ 422 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV-FTDSVFQG---CSTLKRLQTLILQRNG-LKNF-FKVALMTKNMSSLETLDVSLNS-LNSHAYDR 422 (562)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTT---CCSCSSCCEEECCSSC-CCBT-THHHHTTTTCTTCCEEECTTSC-CBSCCSSC
T ss_pred cCCCCceEEECCCCc-cccchhhh---hcccCCCCEEECCCCC-cCCc-ccchhhhcCCCCCCEEECCCCc-CCCccChh
Confidence 567899999998864 33221122 4567888888888875 3332 32 236678888888888844 333 3310
Q ss_pred --ccccc----------c-cccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccccccc
Q 037794 199 --EELNA----------D-KEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNS 260 (293)
Q Consensus 199 --~~~~~----------~-~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~ 260 (293)
.+... . ...+....++|++|+++++ .++.++ ..+..+++|++|+++++ +++.+ |..
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip---~~~~~l~~L~~L~L~~N-~l~~l-~~~ 491 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIP---KDVTHLQALQELNVASN-QLKSV-PDG 491 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCC---TTTTSSCCCSEEECCSS-CCCCC-CTT
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccC---hhhcCCCCCCEEECCCC-CCCCC-CHH
Confidence 00000 0 0001111147777777775 566554 34457778888888876 57777 655
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.40 E-value=7.3e-14 Score=121.60 Aligned_cols=214 Identities=15% Similarity=0.110 Sum_probs=134.7
Q ss_pred cceeeccccccccccccccccc-------cCCCcceEeEcCCCCccccccCc--cCCCCeeEEEeccccccccccccCcc
Q 037794 39 LKFLELDDLPRLTSFCLENYTL-------EFPSLERVFVTRCPNMKTFSQGI--VSTPKLHEVQVSKKEEDELHHWEGNK 109 (293)
Q Consensus 39 L~~L~l~~~~~l~~~~~~~~~~-------~~~~L~~L~i~~c~~l~~lp~~~--~~~~~L~~L~l~~c~~~~~~~~~~~~ 109 (293)
|+.|+++++.. .......... .+++|++|+++++.--..+|..+ ..+++|+.|+++++.
T Consensus 65 L~~L~L~~n~l-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~----------- 132 (312)
T 1wwl_A 65 IKSLSLKRLTV-RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS----------- 132 (312)
T ss_dssp HHHCCCCEEEE-EEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-----------
T ss_pred Hhhcccccccc-cCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-----------
Confidence 77777776532 2221111121 58999999999985444677765 789999999999761
Q ss_pred chhhhhhhhhhhcc-----CCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCcc-CChh-HHhccCCCC
Q 037794 110 LNSTIQKRYEEMIG-----FRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSA-IPAN-LLRCLSNLR 182 (293)
Q Consensus 110 ~~~~~~~l~~~~~~-----~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~-~p~~-~~~~l~~L~ 182 (293)
+...+..+.. +++|++|+++++. +..++... +..+++|++|+++++...... ++.. .+..+++|+
T Consensus 133 ----l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~ 204 (312)
T 1wwl_A 133 ----WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQ---VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204 (312)
T ss_dssp ----CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTT---CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCC
T ss_pred ----CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHH---hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCC
Confidence 1111111122 3899999999865 55554433 567899999999999855431 1222 127799999
Q ss_pred eEEecCcccccccccc-cccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCccccccccc
Q 037794 183 WLEVRNCDSLEEVLHL-EELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSV 261 (293)
Q Consensus 183 ~L~i~~c~~l~~i~~~-~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l 261 (293)
+|++.++ .++.++.. ..... .+++|++|+++++ .++..... .....+++|++|++++| +++.+ |.++
T Consensus 205 ~L~L~~N-~l~~~~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~~-~~~~~l~~L~~L~Ls~N-~l~~i-p~~~ 272 (312)
T 1wwl_A 205 VLALRNA-GMETPSGVCSALAA-------ARVQLQGLDLSHN-SLRDAAGA-PSCDWPSQLNSLNLSFT-GLKQV-PKGL 272 (312)
T ss_dssp EEECTTS-CCCCHHHHHHHHHH-------TTCCCSEEECTTS-CCCSSCCC-SCCCCCTTCCEEECTTS-CCSSC-CSSC
T ss_pred EEECCCC-cCcchHHHHHHHHh-------cCCCCCEEECCCC-cCCcccch-hhhhhcCCCCEEECCCC-ccChh-hhhc
Confidence 9999995 45533211 11111 2389999999986 46553311 24456799999999998 68888 6544
Q ss_pred ----hhhccCCCCCccccccccccccc
Q 037794 262 ----LHVTTDNKEPQKLTSEENFLLAH 284 (293)
Q Consensus 262 ----~~l~~~~~~~~~l~~~~~~~~~~ 284 (293)
+.+.........+..+..++.++
T Consensus 273 ~~~L~~L~Ls~N~l~~~p~~~~l~~L~ 299 (312)
T 1wwl_A 273 PAKLSVLDLSYNRLDRNPSPDELPQVG 299 (312)
T ss_dssp CSEEEEEECCSSCCCSCCCTTTSCEEE
T ss_pred cCCceEEECCCCCCCCChhHhhCCCCC
Confidence 44444444444333344444443
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.39 E-value=5.6e-12 Score=117.02 Aligned_cols=157 Identities=13% Similarity=0.142 Sum_probs=87.0
Q ss_pred cCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceE
Q 037794 61 EFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKE 140 (293)
Q Consensus 61 ~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 140 (293)
.+++|++|++++|.--..+|..+..+++|+.|.++++ .-..+..++..+..+++|+.|+++++. +..
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N------------~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~ 388 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN------------QLKELSKIAEMTTQMKSLQQLDISQNS-VSY 388 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS------------CCCBHHHHHHHHTTCTTCCEEECCSSC-CBC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC------------ccCccccchHHHhhCCCCCEEECCCCc-CCc
Confidence 4566666666665433335555566666666666654 101112334445667777777777654 333
Q ss_pred -eccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEe
Q 037794 141 -IWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILR 219 (293)
Q Consensus 141 -~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~ 219 (293)
++.+. +..+++|++|++++|...... +.. +. ++|+.|++++| .++.++. ++.. . ++|++|+
T Consensus 389 ~l~~~~---~~~l~~L~~L~Ls~N~l~~~~-~~~-l~--~~L~~L~Ls~N-~l~~ip~--~~~~-------l-~~L~~L~ 450 (520)
T 2z7x_B 389 DEKKGD---CSWTKSLLSLNMSSNILTDTI-FRC-LP--PRIKVLDLHSN-KIKSIPK--QVVK-------L-EALQELN 450 (520)
T ss_dssp CGGGCS---CCCCTTCCEEECCSSCCCGGG-GGS-CC--TTCCEEECCSS-CCCCCCG--GGGG-------C-TTCCEEE
T ss_pred ccccch---hccCccCCEEECcCCCCCcch-hhh-hc--ccCCEEECCCC-cccccch--hhhc-------C-CCCCEEE
Confidence 44332 345567777777776543322 221 11 57777777774 4444442 1111 2 7777777
Q ss_pred cCCCCCCceeccCCCccccCCCcceEeeecCC
Q 037794 220 LIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP 251 (293)
Q Consensus 220 l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~ 251 (293)
+.++ .++.++. ..+..+++|++|++++++
T Consensus 451 L~~N-~l~~l~~--~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 451 VASN-QLKSVPD--GIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCSS-CCCCCCT--TTTTTCTTCCEEECCSSC
T ss_pred CCCC-cCCccCH--HHhccCCcccEEECcCCC
Confidence 7775 5665543 235667777777777764
No 64
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.39 E-value=6.4e-12 Score=111.04 Aligned_cols=214 Identities=16% Similarity=0.196 Sum_probs=147.8
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cC
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QG 82 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~ 82 (293)
++++++|+++++ +++.++...- ..+++|++|+++++...+.++.. ...++++++++.+.++.+++.++ ..
T Consensus 29 ~~~l~~L~Ls~N-~i~~i~~~~f-------~~l~~L~~L~Ls~N~i~~~i~~~-~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 29 PRNAIELRFVLT-KLRVIQKGAF-------SGFGDLEKIEISQNDVLEVIEAD-VFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp CTTCSEEEEESC-CCSEECTTSS-------TTCTTCCEEEEECCTTCCEECTT-SBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CCCCCEEEccCC-cCCCcCHHHH-------cCCCCCCEEECcCCCCCCccChh-HhhcchhhhhhhcccCCcccccCchh
Confidence 468999999986 7888886431 23899999999998766655543 24578888888887788888875 45
Q ss_pred ccCCCCeeEEEecccccccccc--ccCc-c-----c--hhhhhhhhhh-hcc-CCCccEEEecCCCCceEeccCCCCCcc
Q 037794 83 IVSTPKLHEVQVSKKEEDELHH--WEGN-K-----L--NSTIQKRYEE-MIG-FRDIERLQLSHFPRLKEIWHGQALPVS 150 (293)
Q Consensus 83 ~~~~~~L~~L~l~~c~~~~~~~--~~~~-~-----~--~~~~~~l~~~-~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~ 150 (293)
+..+++|+.|.++++.-..... ..+. . + +..+..++.. +.. ...++.|++++ +.++.++.+. .
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~----f 174 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSA----F 174 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTS----S
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhh----c
Confidence 6889999999998762111100 0000 0 0 0111122211 122 24577788877 4577776443 2
Q ss_pred cCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceec
Q 037794 151 FFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFC 230 (293)
Q Consensus 151 ~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~ 230 (293)
...+|+++.+.++..++.+ |..++.++++|+.|++++ ..++.++. ..|.+|+.|.+.++.+++.++
T Consensus 175 ~~~~L~~l~l~~~n~l~~i-~~~~f~~l~~L~~LdLs~-N~l~~lp~------------~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEEL-PNDVFHGASGPVILDISR-TRIHSLPS------------YGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp TTEEEEEEECTTCTTCCCC-CTTTTTTEECCSEEECTT-SCCCCCCS------------SSCTTCCEEECTTCTTCCCCC
T ss_pred cccchhHHhhccCCcccCC-CHHHhccCcccchhhcCC-CCcCccCh------------hhhccchHhhhccCCCcCcCC
Confidence 3367899999888888875 777788999999999998 46777763 145889999999999998874
Q ss_pred cCCCccccCCCcceEeeec
Q 037794 231 NFTGNIIEMPMLWSLTIEN 249 (293)
Q Consensus 231 ~~~~~~~~l~~L~~L~i~~ 249 (293)
.+..+++|+.+++.+
T Consensus 241 ----~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 ----TLEKLVALMEASLTY 255 (350)
T ss_dssp ----CTTTCCSCCEEECSC
T ss_pred ----CchhCcChhhCcCCC
Confidence 466889999998854
No 65
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.39 E-value=7.1e-12 Score=116.34 Aligned_cols=83 Identities=14% Similarity=0.044 Sum_probs=47.9
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcc-ccc
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMK-TFS 80 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~-~lp 80 (293)
+.+++|++|+++++ .++.+++. ....+++|++|+++++ .++.++.. .+++|++|+++++.-.. .+|
T Consensus 42 ~~l~~L~~L~Ls~n-~l~~~~~~-------~~~~l~~L~~L~Ls~N-~l~~lp~~----~l~~L~~L~L~~N~l~~~~~p 108 (520)
T 2z7x_B 42 LSLSKLRILIISHN-RIQYLDIS-------VFKFNQELEYLDLSHN-KLVKISCH----PTVNLKHLDLSFNAFDALPIC 108 (520)
T ss_dssp TTCTTCCEEECCSS-CCCEEEGG-------GGTTCTTCCEEECCSS-CCCEEECC----CCCCCSEEECCSSCCSSCCCC
T ss_pred cccccccEEecCCC-ccCCcChH-------HhhcccCCCEEecCCC-ceeecCcc----ccCCccEEeccCCccccccch
Confidence 45667777777766 34444321 1223677777777765 34445543 56777777777654322 245
Q ss_pred cCccCCCCeeEEEeccc
Q 037794 81 QGIVSTPKLHEVQVSKK 97 (293)
Q Consensus 81 ~~~~~~~~L~~L~l~~c 97 (293)
..+..+++|+.|+++++
T Consensus 109 ~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 109 KEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp GGGGGCTTCCEEEEEES
T ss_pred hhhccCCcceEEEecCc
Confidence 55666666666666654
No 66
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.38 E-value=5.1e-12 Score=111.70 Aligned_cols=197 Identities=17% Similarity=0.154 Sum_probs=130.3
Q ss_pred cceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC-ccCCCCeeEEEec
Q 037794 17 KIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG-IVSTPKLHEVQVS 95 (293)
Q Consensus 17 ~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~-~~~~~~L~~L~l~ 95 (293)
+++++|... .+++++|+++++ .++.++.. ...++++|++|+++++..++.+|.. +..+++++.+...
T Consensus 20 ~Lt~iP~~l----------~~~l~~L~Ls~N-~i~~i~~~-~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 20 KVTEIPSDL----------PRNAIELRFVLT-KLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TCCSCCTTC----------CTTCSEEEEESC-CCSEECTT-SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CCCccCcCc----------CCCCCEEEccCC-cCCCcCHH-HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 566776532 467999999886 46666653 2457899999999998766767643 4678887776555
Q ss_pred cccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhH
Q 037794 96 KKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANL 174 (293)
Q Consensus 96 ~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~ 174 (293)
++ ..+..+. ..+..+++|+.|+++++. +..++... .....++..+++.++..+..+ +...
T Consensus 88 ~~--------------N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~---~~~~~~l~~l~l~~~~~i~~l-~~~~ 148 (350)
T 4ay9_X 88 KA--------------NNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVH---KIHSLQKVLLDIQDNINIHTI-ERNS 148 (350)
T ss_dssp EE--------------TTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCT---TCCBSSCEEEEEESCTTCCEE-CTTS
T ss_pred cC--------------CcccccCchhhhhccccccccccccc-cccCCchh---hcccchhhhhhhccccccccc-cccc
Confidence 43 1222232 234678899999998753 44444322 233456778888888777765 5444
Q ss_pred HhccC-CCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCc
Q 037794 175 LRCLS-NLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDM 253 (293)
Q Consensus 175 ~~~l~-~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L 253 (293)
+.+++ .++.|++.+ ..++.++. +... . ++|++|.+.++..++.++. +.+..+++|++|+++++ +|
T Consensus 149 f~~~~~~l~~L~L~~-N~i~~i~~--~~f~-------~-~~L~~l~l~~~n~l~~i~~--~~f~~l~~L~~LdLs~N-~l 214 (350)
T 4ay9_X 149 FVGLSFESVILWLNK-NGIQEIHN--SAFN-------G-TQLDELNLSDNNNLEELPN--DVFHGASGPVILDISRT-RI 214 (350)
T ss_dssp STTSBSSCEEEECCS-SCCCEECT--TSST-------T-EEEEEEECTTCTTCCCCCT--TTTTTEECCSEEECTTS-CC
T ss_pred hhhcchhhhhhcccc-ccccCCCh--hhcc-------c-cchhHHhhccCCcccCCCH--HHhccCcccchhhcCCC-Cc
Confidence 55554 577888887 56666652 1111 2 6788888887778887765 45677788888888887 68
Q ss_pred cccccc
Q 037794 254 ETFISN 259 (293)
Q Consensus 254 ~~l~p~ 259 (293)
+++ |.
T Consensus 215 ~~l-p~ 219 (350)
T 4ay9_X 215 HSL-PS 219 (350)
T ss_dssp CCC-CS
T ss_pred Ccc-Ch
Confidence 887 64
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.38 E-value=5.9e-12 Score=107.32 Aligned_cols=177 Identities=16% Similarity=0.198 Sum_probs=119.4
Q ss_pred cccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794 35 AFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI 114 (293)
Q Consensus 35 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 114 (293)
.+++|+.|.+.++. +..++. ...+++|+.|+++++. ++.++ .+..+++|+.|.+++| .+
T Consensus 39 ~l~~L~~L~l~~~~-i~~~~~---l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n---------------~l 97 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSVQG---IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGN---------------QL 97 (272)
T ss_dssp HHTTCCEEECTTSC-CCCCTT---GGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTS---------------CC
T ss_pred cccceeeeeeCCCC-cccccc---cccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCC---------------cc
Confidence 37788888887763 333332 4478889999998864 55553 5677888999988876 11
Q ss_pred hhhhh-hhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccc
Q 037794 115 QKRYE-EMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLE 193 (293)
Q Consensus 115 ~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~ 193 (293)
..+.. .+..+++|++|+++++. ++.++... +..+++|++|++++|. +..+ +...+..+++|+.|++.+| .++
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~ 170 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQ-LQSLPDGV---FDKLTNLTYLNLAHNQ-LQSL-PKGVFDKLTNLTELDLSYN-QLQ 170 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSS-CCC
T ss_pred CccChhHhcCCcCCCEEECCCCc-CCccCHHH---hccCCCCCEEECCCCc-cCcc-CHHHhccCccCCEEECCCC-CcC
Confidence 12221 23567889999998854 55444332 4567889999998885 4443 5555778899999999985 455
Q ss_pred ccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCC
Q 037794 194 EVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP 251 (293)
Q Consensus 194 ~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~ 251 (293)
.++. ..+. .+++|++|++.++ .++.+.. ..+..+++|++|++++++
T Consensus 171 ~~~~-~~~~--------~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 171 SLPE-GVFD--------KLTQLKDLRLYQN-QLKSVPD--GVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCCT-TTTT--------TCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred ccCH-HHhc--------CCccCCEEECCCC-cCCccCH--HHHhCCcCCCEEEccCCC
Confidence 5442 1111 2388999999886 5666543 456788999999998864
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.37 E-value=9.4e-13 Score=114.79 Aligned_cols=195 Identities=14% Similarity=0.084 Sum_probs=127.3
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ 81 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~ 81 (293)
+.+++|++|+++++ .+..++. .. .+++|++|+++++. +..++ ..++|+.|+++++ .++.++.
T Consensus 55 ~~l~~L~~L~Ls~n-~l~~~~~-~~--------~l~~L~~L~Ls~n~-l~~l~------~~~~L~~L~l~~n-~l~~~~~ 116 (317)
T 3o53_A 55 APFTKLELLNLSSN-VLYETLD-LE--------SLSTLRTLDLNNNY-VQELL------VGPSIETLHAANN-NISRVSC 116 (317)
T ss_dssp TTCTTCCEEECTTS-CCEEEEE-ET--------TCTTCCEEECCSSE-EEEEE------ECTTCCEEECCSS-CCSEEEE
T ss_pred hCCCcCCEEECCCC-cCCcchh-hh--------hcCCCCEEECcCCc-ccccc------CCCCcCEEECCCC-ccCCcCc
Confidence 57899999999997 4554443 22 38899999998874 44443 3488999999886 4555543
Q ss_pred CccCCCCeeEEEeccccccccccccCccchhhhhhh-hhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEe
Q 037794 82 GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKR-YEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVV 160 (293)
Q Consensus 82 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i 160 (293)
..+++|+.|+++++ .+..+ ...+..+++|+.|+++++. +..+.... + ...+++|++|++
T Consensus 117 --~~~~~L~~L~l~~N---------------~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~-~~~l~~L~~L~L 176 (317)
T 3o53_A 117 --SRGQGKKNIYLANN---------------KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAE-L-AASSDTLEHLNL 176 (317)
T ss_dssp --CCCSSCEEEECCSS---------------CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGG-G-GGGTTTCCEEEC
T ss_pred --cccCCCCEEECCCC---------------CCCCccchhhhccCCCCEEECCCCC-CCcccHHH-H-hhccCcCCEEEC
Confidence 24678899988876 11111 1133557888888888854 55443322 1 135678888888
Q ss_pred ccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCC
Q 037794 161 DDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMP 240 (293)
Q Consensus 161 ~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~ 240 (293)
++|.. ..+ +. ...+++|++|++.++ .++.++. .+.. . ++|++|++.++ .++.++ ..+..++
T Consensus 177 ~~N~l-~~~-~~--~~~l~~L~~L~Ls~N-~l~~l~~--~~~~-------l-~~L~~L~L~~N-~l~~l~---~~~~~l~ 237 (317)
T 3o53_A 177 QYNFI-YDV-KG--QVVFAKLKTLDLSSN-KLAFMGP--EFQS-------A-AGVTWISLRNN-KLVLIE---KALRFSQ 237 (317)
T ss_dssp TTSCC-CEE-EC--CCCCTTCCEEECCSS-CCCEECG--GGGG-------G-TTCSEEECTTS-CCCEEC---TTCCCCT
T ss_pred CCCcC-ccc-cc--ccccccCCEEECCCC-cCCcchh--hhcc-------c-CcccEEECcCC-cccchh---hHhhcCC
Confidence 88763 332 32 234788888888884 4555542 1222 3 78888888885 677765 4567788
Q ss_pred CcceEeeecCCCcc
Q 037794 241 MLWSLTIENCPDME 254 (293)
Q Consensus 241 ~L~~L~i~~C~~L~ 254 (293)
+|+.|++++++ +.
T Consensus 238 ~L~~L~l~~N~-~~ 250 (317)
T 3o53_A 238 NLEHFDLRGNG-FH 250 (317)
T ss_dssp TCCEEECTTCC-CB
T ss_pred CCCEEEccCCC-cc
Confidence 88888888874 44
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.36 E-value=9.7e-12 Score=107.08 Aligned_cols=186 Identities=18% Similarity=0.147 Sum_probs=135.2
Q ss_pred cccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-ccCccCCCCeeEEEeccccccccccccCccchhh
Q 037794 35 AFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNST 113 (293)
Q Consensus 35 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~ 113 (293)
.+++++.+++.+. .++.++.. -.++++.|+++++. ++.+ +..+..+++|+.|.++++ .
T Consensus 8 ~l~~l~~l~~~~~-~l~~ip~~----~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n---------------~ 66 (290)
T 1p9a_G 8 KVASHLEVNCDKR-NLTALPPD----LPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA---------------E 66 (290)
T ss_dssp CSTTCCEEECTTS-CCSSCCSC----CCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS---------------C
T ss_pred ccCCccEEECCCC-CCCcCCCC----CCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCC---------------c
Confidence 4788999998774 46667654 24789999999975 5544 466788999999999976 1
Q ss_pred hhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccc
Q 037794 114 IQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLE 193 (293)
Q Consensus 114 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~ 193 (293)
+..+... ..+++|+.|+++++ .++.++. .+..+++|++|+++++.. +.+ +...+.++++|++|++.++ .++
T Consensus 67 l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~----~~~~l~~L~~L~l~~N~l-~~l-~~~~~~~l~~L~~L~L~~N-~l~ 137 (290)
T 1p9a_G 67 LTKLQVD-GTLPVLGTLDLSHN-QLQSLPL----LGQTLPALTVLDVSFNRL-TSL-PLGALRGLGELQELYLKGN-ELK 137 (290)
T ss_dssp CCEEECC-SCCTTCCEEECCSS-CCSSCCC----CTTTCTTCCEEECCSSCC-CCC-CSSTTTTCTTCCEEECTTS-CCC
T ss_pred cCcccCC-CCCCcCCEEECCCC-cCCcCch----hhccCCCCCEEECCCCcC-ccc-CHHHHcCCCCCCEEECCCC-CCC
Confidence 1122221 56899999999985 4555442 145789999999998864 443 5556888999999999994 566
Q ss_pred ccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCccccccccchhh
Q 037794 194 EVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHV 264 (293)
Q Consensus 194 ~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l 264 (293)
.++. ..+. .+++|+.|++.+. .++.++. ..+..+++|++|+++++ +++.+ |.++...
T Consensus 138 ~~~~-~~~~--------~l~~L~~L~L~~N-~l~~l~~--~~~~~l~~L~~L~L~~N-~l~~i-p~~~~~~ 194 (290)
T 1p9a_G 138 TLPP-GLLT--------PTPKLEKLSLANN-NLTELPA--GLLNGLENLDTLLLQEN-SLYTI-PKGFFGS 194 (290)
T ss_dssp CCCT-TTTT--------TCTTCCEEECTTS-CCSCCCT--TTTTTCTTCCEEECCSS-CCCCC-CTTTTTT
T ss_pred ccCh-hhcc--------cccCCCEEECCCC-cCCccCH--HHhcCcCCCCEEECCCC-cCCcc-Chhhccc
Confidence 6542 1111 2389999999985 6777764 45678999999999997 78888 7665543
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.35 E-value=3.2e-12 Score=110.98 Aligned_cols=187 Identities=17% Similarity=0.101 Sum_probs=91.3
Q ss_pred ccccceeecccccccccccccccc-ccCCCcceEeEcCCCCccccc----cCccCCCCeeEEEeccccccccccccCccc
Q 037794 36 FNELKFLELDDLPRLTSFCLENYT-LEFPSLERVFVTRCPNMKTFS----QGIVSTPKLHEVQVSKKEEDELHHWEGNKL 110 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~L~~L~i~~c~~l~~lp----~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~ 110 (293)
+++|++|+++++..-...+.. .. ..+++|+.|+++++.--...+ .....+++|+.|.++++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n------------- 155 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPL-PLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA------------- 155 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCC-SSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-------------
T ss_pred cCceeEEEeeCCEeccchhhh-hhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-------------
Confidence 455777777666433223222 11 456677777777654222211 12234667777777655
Q ss_pred hhhhhhhhhhhccCCCccEEEecCCCCceE--eccCCCCCcccCCCccEEEeccCCCCCccCCh---hHHhccCCCCeEE
Q 037794 111 NSTIQKRYEEMIGFRDIERLQLSHFPRLKE--IWHGQALPVSFFNNLFKLVVDDCANMSSAIPA---NLLRCLSNLRWLE 185 (293)
Q Consensus 111 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~---~~~~~l~~L~~L~ 185 (293)
......+..+..+++|++|+++++.-... ++.. .....+++|++|++++|.. +.+ +. ..+..+++|++|+
T Consensus 156 -~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~Ls~N~l-~~l-~~~~~~l~~~l~~L~~L~ 230 (310)
T 4glp_A 156 -HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLALRNTGM-ETP-TGVCAALAAAGVQPHSLD 230 (310)
T ss_dssp -SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBCCSSCC-CCH-HHHHHHHHHHTCCCSSEE
T ss_pred -CcchhhHHHhccCCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEECCCCCC-Cch-HHHHHHHHhcCCCCCEEE
Confidence 11011112234566777777776542221 1100 1123556777777776643 221 21 1245567777777
Q ss_pred ecCccccccc-ccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794 186 VRNCDSLEEV-LHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 186 i~~c~~l~~i-~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
++++ .++.+ +. .... ...+++|++|+++++ .++.++ ..+ .++|++|+++++ +++.+
T Consensus 231 Ls~N-~l~~~~p~--~~~~-----~~~~~~L~~L~Ls~N-~l~~lp---~~~--~~~L~~L~Ls~N-~l~~~ 287 (310)
T 4glp_A 231 LSHN-SLRATVNP--SAPR-----CMWSSALNSLNLSFA-GLEQVP---KGL--PAKLRVLDLSSN-RLNRA 287 (310)
T ss_dssp CTTS-CCCCCCCS--CCSS-----CCCCTTCCCEECCSS-CCCSCC---SCC--CSCCSCEECCSC-CCCSC
T ss_pred CCCC-CCCccchh--hHHh-----ccCcCcCCEEECCCC-CCCchh---hhh--cCCCCEEECCCC-cCCCC
Confidence 7763 33333 21 1111 001257777777664 455543 222 267777777766 56655
No 71
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.34 E-value=3.6e-11 Score=118.17 Aligned_cols=135 Identities=14% Similarity=0.125 Sum_probs=79.7
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI 83 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~ 83 (293)
+++|++|+++++ .++.+.... ...+++|++|+++++.....+... ...++++|+.|+++++.--...|..+
T Consensus 23 p~~l~~LdLs~N-~i~~i~~~~-------~~~l~~L~~LdLs~n~~~~~i~~~-~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 23 LNTTERLLLSFN-YIRTVTASS-------FPFLEQLQLLELGSQYTPLTIDKE-AFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp CTTCCEEEEESC-CCCEECSSS-------CSSCCSCSEEEECTTCCCCEECTT-TTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCcCEEECCCC-cCCccChhH-------CcccccCeEEeCCCCCCccccCHH-HhcCCCCCCEEECCCCcCcccCHhHc
Confidence 467888888876 455554322 223788888888887555444322 24577888888888764333446677
Q ss_pred cCCCCeeEEEeccccccccccccCccchhhhhhhhhh--hccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEec
Q 037794 84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEE--MIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVD 161 (293)
Q Consensus 84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~ 161 (293)
..+++|+.|++++|. .. ...+.. +..+++|+.|+++++. +..+.... .+..+++|++|+++
T Consensus 94 ~~l~~L~~L~Ls~n~-l~-------------~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~--~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 94 QGLFHLFELRLYFCG-LS-------------DAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHP--SFGKLNSLKSIDFS 156 (844)
T ss_dssp CSCSSCCCEECTTCC-CS-------------SCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCG--GGGTCSSCCEEEEE
T ss_pred cCCcccCEeeCcCCC-CC-------------cccccCccccccCCCCEEECCCCc-ccccccch--hHhhCCCCCEEECC
Confidence 788888888887761 11 111111 3556677777777643 33222110 13456677777776
Q ss_pred cCC
Q 037794 162 DCA 164 (293)
Q Consensus 162 ~c~ 164 (293)
++.
T Consensus 157 ~N~ 159 (844)
T 3j0a_A 157 SNQ 159 (844)
T ss_dssp SSC
T ss_pred CCc
Confidence 654
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.32 E-value=2.5e-11 Score=112.08 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=134.8
Q ss_pred CCCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794 1 VGIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS 80 (293)
Q Consensus 1 ~g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp 80 (293)
++.+++|++|++++|. +..++. .. .+++|++|+++++. +..++ ..++|+.|++++| .+..++
T Consensus 54 ~~~l~~L~~L~Ls~N~-l~~~~~-l~--------~l~~L~~L~Ls~N~-l~~l~------~~~~L~~L~L~~N-~l~~~~ 115 (487)
T 3oja_A 54 LAPFTKLELLNLSSNV-LYETLD-LE--------SLSTLRTLDLNNNY-VQELL------VGPSIETLHAANN-NISRVS 115 (487)
T ss_dssp GTTCTTCCEEECTTSC-CEEEEE-CT--------TCTTCCEEECCSSE-EEEEE------ECTTCCEEECCSS-CCCCEE
T ss_pred HhCCCCCCEEEeeCCC-CCCCcc-cc--------cCCCCCEEEecCCc-CCCCC------CCCCcCEEECcCC-cCCCCC
Confidence 3578999999999984 554443 22 38999999999873 44444 3489999999987 455554
Q ss_pred cCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEe
Q 037794 81 QGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVV 160 (293)
Q Consensus 81 ~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i 160 (293)
. ..+++|+.|+++++ ......+..+..+++|+.|+++++. +..+.... + ...+++|++|++
T Consensus 116 ~--~~l~~L~~L~L~~N--------------~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-l-~~~l~~L~~L~L 176 (487)
T 3oja_A 116 C--SRGQGKKNIYLANN--------------KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAE-L-AASSDTLEHLNL 176 (487)
T ss_dssp E--CCCSSCEEEECCSS--------------CCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGG-G-GGGTTTCCEEEC
T ss_pred c--cccCCCCEEECCCC--------------CCCCCCchhhcCCCCCCEEECCCCC-CCCcChHH-H-hhhCCcccEEec
Confidence 3 34688999999876 1111122234668899999998864 55443222 1 125789999999
Q ss_pred ccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCC
Q 037794 161 DDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMP 240 (293)
Q Consensus 161 ~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~ 240 (293)
++|... .+ +. ...+++|+.|++++ +.++.++. .+.. . ++|+.|+++++ .++.++ ..+..++
T Consensus 177 s~N~l~-~~-~~--~~~l~~L~~L~Ls~-N~l~~~~~--~~~~-------l-~~L~~L~Ls~N-~l~~lp---~~l~~l~ 237 (487)
T 3oja_A 177 QYNFIY-DV-KG--QVVFAKLKTLDLSS-NKLAFMGP--EFQS-------A-AGVTWISLRNN-KLVLIE---KALRFSQ 237 (487)
T ss_dssp TTSCCC-EE-EC--CCCCTTCCEEECCS-SCCCEECG--GGGG-------G-TTCSEEECTTS-CCCEEC---TTCCCCT
T ss_pred CCCccc-cc-cc--cccCCCCCEEECCC-CCCCCCCH--hHcC-------C-CCccEEEecCC-cCcccc---hhhccCC
Confidence 988743 32 32 33588999999998 45666542 1222 3 88999999984 677765 4567889
Q ss_pred CcceEeeecCCCcc
Q 037794 241 MLWSLTIENCPDME 254 (293)
Q Consensus 241 ~L~~L~i~~C~~L~ 254 (293)
+|+.|++++++ +.
T Consensus 238 ~L~~L~l~~N~-l~ 250 (487)
T 3oja_A 238 NLEHFDLRGNG-FH 250 (487)
T ss_dssp TCCEEECTTCC-BC
T ss_pred CCCEEEcCCCC-Cc
Confidence 99999999885 44
No 73
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.32 E-value=6.4e-12 Score=101.87 Aligned_cols=150 Identities=16% Similarity=0.249 Sum_probs=107.3
Q ss_pred cCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceE
Q 037794 61 EFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKE 140 (293)
Q Consensus 61 ~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 140 (293)
.+++|+.|+++++ .++.+| ++..+++|+.|++++| .. .. ...+..+++|++|+++++. ++.
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~--------------~~-~~~l~~l~~L~~L~l~~n~-l~~ 102 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HA--------------TN-YNPISGLSNLERLRIMGKD-VTS 102 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CC--------------SC-CGGGTTCTTCCEEEEECTT-CBG
T ss_pred hcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CC--------------Cc-chhhhcCCCCCEEEeECCc-cCc
Confidence 6788888888885 466666 6778888999988876 11 01 1234668889999998854 443
Q ss_pred eccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEec
Q 037794 141 IWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRL 220 (293)
Q Consensus 141 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l 220 (293)
..... +..+++|++|++++|...... + ..+..+++|++|++.+|..++.++. +. .+++|++|++
T Consensus 103 ~~~~~---l~~l~~L~~L~Ls~n~i~~~~-~-~~l~~l~~L~~L~L~~n~~i~~~~~---l~--------~l~~L~~L~l 166 (197)
T 4ezg_A 103 DKIPN---LSGLTSLTLLDISHSAHDDSI-L-TKINTLPKVNSIDLSYNGAITDIMP---LK--------TLPELKSLNI 166 (197)
T ss_dssp GGSCC---CTTCTTCCEEECCSSBCBGGG-H-HHHTTCSSCCEEECCSCTBCCCCGG---GG--------GCSSCCEEEC
T ss_pred ccChh---hcCCCCCCEEEecCCccCcHh-H-HHHhhCCCCCEEEccCCCCccccHh---hc--------CCCCCCEEEC
Confidence 22222 567899999999988654432 3 4578899999999999876766642 11 2489999999
Q ss_pred CCCCCCceeccCCCccccCCCcceEeeecC
Q 037794 221 IDLPKLKRFCNFTGNIIEMPMLWSLTIENC 250 (293)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C 250 (293)
.++ .++++ ..+..+++|++|++++.
T Consensus 167 ~~n-~i~~~----~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 167 QFD-GVHDY----RGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp TTB-CCCCC----TTGGGCSSCCEEEECBC
T ss_pred CCC-CCcCh----HHhccCCCCCEEEeeCc
Confidence 986 46665 36778899999999886
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.31 E-value=3.7e-11 Score=102.16 Aligned_cols=179 Identities=18% Similarity=0.264 Sum_probs=127.0
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc-C
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ-G 82 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~ 82 (293)
.++|++|+++++ .+..++... ...+++|++|+++++. +..++.. ....+++|++|+++++ .++.+|. .
T Consensus 36 ~~~l~~L~l~~n-~l~~~~~~~-------~~~l~~L~~L~l~~n~-l~~i~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~ 104 (270)
T 2o6q_A 36 PADTKKLDLQSN-KLSSLPSKA-------FHRLTKLRLLYLNDNK-LQTLPAG-IFKELKNLETLWVTDN-KLQALPIGV 104 (270)
T ss_dssp CTTCSEEECCSS-CCSCCCTTS-------SSSCTTCCEEECCSSC-CSCCCTT-TTSSCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCCCCEEECcCC-CCCeeCHHH-------hcCCCCCCEEECCCCc-cCeeChh-hhcCCCCCCEEECCCC-cCCcCCHhH
Confidence 457999999987 566666432 2238999999998864 4555543 2347899999999986 4666654 4
Q ss_pred ccCCCCeeEEEeccccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEec
Q 037794 83 IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVD 161 (293)
Q Consensus 83 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~ 161 (293)
+..+++|+.|.++++ .+..+. ..+..+++|+.|+++++ .++.++.+. +..+++|++|+++
T Consensus 105 ~~~l~~L~~L~l~~n---------------~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~---~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 105 FDQLVNLAELRLDRN---------------QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGV---FDKLTSLKELRLY 165 (270)
T ss_dssp TTTCSSCCEEECCSS---------------CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECC
T ss_pred cccccCCCEEECCCC---------------ccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhH---ccCCcccceeEec
Confidence 578999999999876 111111 22467899999999986 466655443 5578999999999
Q ss_pred cCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCC
Q 037794 162 DCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLP 224 (293)
Q Consensus 162 ~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 224 (293)
++. +..+ +...+.++++|++|++.++ .++.++. ..+. .+++|+.|++.+.+
T Consensus 166 ~n~-l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~--------~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 166 NNQ-LKRV-PEGAFDKLTELKTLKLDNN-QLKRVPE-GAFD--------SLEKLKMLQLQENP 216 (270)
T ss_dssp SSC-CSCC-CTTTTTTCTTCCEEECCSS-CCSCCCT-TTTT--------TCTTCCEEECCSSC
T ss_pred CCc-CcEe-ChhHhccCCCcCEEECCCC-cCCcCCH-HHhc--------cccCCCEEEecCCC
Confidence 885 4443 5556888999999999995 5666542 1111 23899999998754
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.30 E-value=4.5e-11 Score=100.56 Aligned_cols=174 Identities=16% Similarity=0.162 Sum_probs=109.1
Q ss_pred ccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-ccCccCCCCeeEEEeccccccccccccCccchhhhhh
Q 037794 38 ELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQK 116 (293)
Q Consensus 38 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~ 116 (293)
..+.+++.+. .+..++.. -.++++.|+++++. +..+ +..+..+++|+.|+++++ .+..
T Consensus 15 ~~~~l~~~~~-~l~~~p~~----~~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n---------------~l~~ 73 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSG----IPADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYN---------------QLQT 73 (251)
T ss_dssp GGTEEECTTC-CCSSCCSC----CCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS---------------CCCC
T ss_pred CCeEEecCCC-CccccCCC----CCCCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCC---------------cCCc
Confidence 4556666553 34555543 23577788887754 4433 334567788888887765 1111
Q ss_pred h-hhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccc
Q 037794 117 R-YEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEV 195 (293)
Q Consensus 117 l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i 195 (293)
+ ...+..+++|+.|+++++. ++.++... +..+++|++|+++++. +..+ +...+.++++|++|++.++ .++.+
T Consensus 74 ~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~ 146 (251)
T 3m19_A 74 LSAGVFDDLTELGTLGLANNQ-LASLPLGV---FDHLTQLDKLYLGGNQ-LKSL-PSGVFDRLTKLKELRLNTN-QLQSI 146 (251)
T ss_dssp CCTTTTTTCTTCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred cCHhHhccCCcCCEEECCCCc-ccccChhH---hcccCCCCEEEcCCCc-CCCc-ChhHhccCCcccEEECcCC-cCCcc
Confidence 1 1223567788888887743 55544333 4567888888888874 4443 5555777888888888884 56555
Q ss_pred ccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCC
Q 037794 196 LHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP 251 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~ 251 (293)
+. ..+. .+++|++|++.+. .++.++. ..+..+++|++|++++++
T Consensus 147 ~~-~~~~--------~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 147 PA-GAFD--------KLTNLQTLSLSTN-QLQSVPH--GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CT-TTTT--------TCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECCSCC
T ss_pred CH-HHcC--------cCcCCCEEECCCC-cCCccCH--HHHhCCCCCCEEEeeCCc
Confidence 42 1111 2388888888885 5666543 456778889999888763
No 76
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.29 E-value=2.3e-11 Score=98.53 Aligned_cols=150 Identities=13% Similarity=0.240 Sum_probs=95.4
Q ss_pred cccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794 35 AFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI 114 (293)
Q Consensus 35 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 114 (293)
.+++|+.|+++++. +..++ . ...+++|++|++++| .++.++ .+..+++|++|+++++ ...
T Consensus 42 ~l~~L~~L~l~~n~-i~~l~-~--l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n--------------~l~ 101 (197)
T 4ezg_A 42 QMNSLTYITLANIN-VTDLT-G--IEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGK--------------DVT 101 (197)
T ss_dssp HHHTCCEEEEESSC-CSCCT-T--GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECT--------------TCB
T ss_pred hcCCccEEeccCCC-ccChH-H--HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECC--------------ccC
Confidence 37778888887753 34444 1 457788888888887 555443 5567788888888765 111
Q ss_pred hhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccc
Q 037794 115 QKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEE 194 (293)
Q Consensus 115 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~ 194 (293)
...+..+..+++|+.|+++++. ++...... +..+++|++|++++|..+.++ + .+..+++|++|++.+| .++.
T Consensus 102 ~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~---l~~l~~L~~L~L~~n~~i~~~-~--~l~~l~~L~~L~l~~n-~i~~ 173 (197)
T 4ezg_A 102 SDKIPNLSGLTSLTLLDISHSA-HDDSILTK---INTLPKVNSIDLSYNGAITDI-M--PLKTLPELKSLNIQFD-GVHD 173 (197)
T ss_dssp GGGSCCCTTCTTCCEEECCSSB-CBGGGHHH---HTTCSSCCEEECCSCTBCCCC-G--GGGGCSSCCEEECTTB-CCCC
T ss_pred cccChhhcCCCCCCEEEecCCc-cCcHhHHH---HhhCCCCCEEEccCCCCcccc-H--hhcCCCCCCEEECCCC-CCcC
Confidence 1223344667888888888754 33211111 456788888888888756653 4 3677888888888885 3444
Q ss_pred cccccccccccccCCCCCCcccEEecCCC
Q 037794 195 VLHLEELNADKEHIGPLFPRLFILRLIDL 223 (293)
Q Consensus 195 i~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 223 (293)
++ .+. .+++|++|++.+.
T Consensus 174 ~~---~l~--------~l~~L~~L~l~~N 191 (197)
T 4ezg_A 174 YR---GIE--------DFPKLNQLYAFSQ 191 (197)
T ss_dssp CT---TGG--------GCSSCCEEEECBC
T ss_pred hH---Hhc--------cCCCCCEEEeeCc
Confidence 43 111 2388888888763
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.29 E-value=3.9e-11 Score=102.27 Aligned_cols=185 Identities=18% Similarity=0.250 Sum_probs=127.5
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc-CccCCCCeeEEEeccccccccccccCccchhhh
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ-GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI 114 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 114 (293)
.++|++|+++++. +..++.. ....+++|++|+++++ .++.++. .+..+++|+.|+++++ .+
T Consensus 27 ~~~l~~L~ls~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n---------------~l 88 (276)
T 2z62_A 27 PFSTKNLDLSFNP-LRHLGSY-SFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN---------------PI 88 (276)
T ss_dssp CTTCCEEECTTCC-CCEECTT-TTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC---------------CC
T ss_pred CCCccEEECCCCc-ccccCHh-HhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC---------------cc
Confidence 3569999998874 4555442 2457899999999997 5665554 5678999999999976 11
Q ss_pred hhh-hhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccc
Q 037794 115 QKR-YEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLE 193 (293)
Q Consensus 115 ~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~ 193 (293)
..+ +..+..+++|+.|+++++. +..+... ++..+++|++|+++++.....-+|. .+.++++|++|++.++ .++
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N-~l~ 162 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETN-LASLENF---PIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSN-KIQ 162 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSC-CCCSTTC---CCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSS-CCC
T ss_pred CccChhhhcCCccccEEECCCCC-ccccCch---hcccCCCCCEEECcCCccceecCch-hhccCCCCCEEECCCC-CCC
Confidence 111 1334678999999999864 4444332 3667899999999988754321244 4788999999999995 455
Q ss_pred ccccccccccccccCCCCCCccc----EEecCCCCCCceeccCCCccccCCCcceEeeecCCCccccccc
Q 037794 194 EVLHLEELNADKEHIGPLFPRLF----ILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISN 259 (293)
Q Consensus 194 ~i~~~~~~~~~~~~~~~~f~~L~----~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~ 259 (293)
.++. ..+.. . ++|+ +|++++. .++.++. ......+|++|+++++ +++.+ |.
T Consensus 163 ~~~~-~~~~~-------l-~~L~~l~l~L~ls~n-~l~~~~~---~~~~~~~L~~L~L~~n-~l~~~-~~ 217 (276)
T 2z62_A 163 SIYC-TDLRV-------L-HQMPLLNLSLDLSLN-PMNFIQP---GAFKEIRLKELALDTN-QLKSV-PD 217 (276)
T ss_dssp EECG-GGGHH-------H-HTCTTCCEEEECCSS-CCCEECT---TSSCSCCEEEEECCSS-CCSCC-CT
T ss_pred cCCH-HHhhh-------h-hhccccceeeecCCC-cccccCc---cccCCCcccEEECCCC-ceeec-CH
Confidence 5532 11111 1 3444 7888874 5777653 3344558999999998 58888 54
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.28 E-value=6.2e-11 Score=102.87 Aligned_cols=172 Identities=17% Similarity=0.277 Sum_probs=129.8
Q ss_pred cccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794 35 AFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI 114 (293)
Q Consensus 35 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 114 (293)
.+++|++|++.++ .+..++. ...+++|+.|++++| .++.++. +..+++|+.|+++++. +
T Consensus 39 ~l~~L~~L~l~~~-~i~~l~~---~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~---------------l 97 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTIEG---VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP---------------L 97 (308)
T ss_dssp HHHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC---------------C
T ss_pred HcCCcCEEEeeCC-CccCchh---hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc---------------C
Confidence 4889999999987 3455542 557999999999997 5666665 7889999999999871 1
Q ss_pred hhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccc
Q 037794 115 QKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEE 194 (293)
Q Consensus 115 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~ 194 (293)
..+ ..+..+++|+.|+++++. ++.++ ++..+++|++|++++|.. ..+ +. +..+++|+.|++.+| .++.
T Consensus 98 ~~~-~~~~~l~~L~~L~l~~n~-l~~~~-----~l~~l~~L~~L~l~~n~l-~~~-~~--l~~l~~L~~L~l~~n-~l~~ 165 (308)
T 1h6u_A 98 KNV-SAIAGLQSIKTLDLTSTQ-ITDVT-----PLAGLSNLQVLYLDLNQI-TNI-SP--LAGLTNLQYLSIGNA-QVSD 165 (308)
T ss_dssp SCC-GGGTTCTTCCEEECTTSC-CCCCG-----GGTTCTTCCEEECCSSCC-CCC-GG--GGGCTTCCEEECCSS-CCCC
T ss_pred CCc-hhhcCCCCCCEEECCCCC-CCCch-----hhcCCCCCCEEECCCCcc-CcC-cc--ccCCCCccEEEccCC-cCCC
Confidence 112 235778999999999965 55443 156789999999999864 433 33 778999999999995 5555
Q ss_pred cccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794 195 VLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 195 i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
++. +. .+++|++|++.++ .++++ ..+..+++|++|++++| +++.+
T Consensus 166 ~~~---l~--------~l~~L~~L~l~~n-~l~~~----~~l~~l~~L~~L~L~~N-~l~~~ 210 (308)
T 1h6u_A 166 LTP---LA--------NLSKLTTLKADDN-KISDI----SPLASLPNLIEVHLKNN-QISDV 210 (308)
T ss_dssp CGG---GT--------TCTTCCEEECCSS-CCCCC----GGGGGCTTCCEEECTTS-CCCBC
T ss_pred Chh---hc--------CCCCCCEEECCCC-ccCcC----hhhcCCCCCCEEEccCC-ccCcc
Confidence 542 21 2499999999986 57666 34778999999999998 68777
No 79
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.28 E-value=7.2e-11 Score=110.76 Aligned_cols=157 Identities=16% Similarity=0.195 Sum_probs=112.2
Q ss_pred ccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCce
Q 037794 60 LEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLK 139 (293)
Q Consensus 60 ~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 139 (293)
..+++|++|+++++.--..+|..+..+++|+.|+++++ .-..+..++..+..+++|+.|+++++. ++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N------------~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~ 416 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN------------GLKNFFKVALMTKNMSSLETLDVSLNS-LN 416 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS------------CCCBTTHHHHTTTTCTTCCEEECTTSC-CB
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC------------CcCCcccchhhhcCCCCCCEEECCCCc-CC
Confidence 36788999999887544456777788899999998875 101112334456788999999999865 44
Q ss_pred E-eccCCCCCcccCCCccEEEeccCCCCCccCChhHHhcc-CCCCeEEecCcccccccccccccccccccCCCCCCcccE
Q 037794 140 E-IWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCL-SNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFI 217 (293)
Q Consensus 140 ~-~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l-~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~ 217 (293)
. ++.+. ...+++|++|++++|...... ...+ ++|+.|++.++ .++.++. +... . ++|++
T Consensus 417 ~~~~~~~---~~~l~~L~~L~l~~n~l~~~~-----~~~l~~~L~~L~L~~N-~l~~ip~--~~~~-------l-~~L~~ 477 (562)
T 3a79_B 417 SHAYDRT---CAWAESILVLNLSSNMLTGSV-----FRCLPPKVKVLDLHNN-RIMSIPK--DVTH-------L-QALQE 477 (562)
T ss_dssp SCCSSCC---CCCCTTCCEEECCSSCCCGGG-----GSSCCTTCSEEECCSS-CCCCCCT--TTTS-------S-CCCSE
T ss_pred CccChhh---hcCcccCCEEECCCCCCCcch-----hhhhcCcCCEEECCCC-cCcccCh--hhcC-------C-CCCCE
Confidence 3 55433 456789999999998754432 2334 69999999995 6776653 2112 3 89999
Q ss_pred EecCCCCCCceeccCCCccccCCCcceEeeecCC
Q 037794 218 LRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP 251 (293)
Q Consensus 218 L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~ 251 (293)
|++.++ .++.++. ..+..+++|+.|+++++|
T Consensus 478 L~L~~N-~l~~l~~--~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 478 LNVASN-QLKSVPD--GVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EECCSS-CCCCCCT--TSTTTCTTCCCEECCSCC
T ss_pred EECCCC-CCCCCCH--HHHhcCCCCCEEEecCCC
Confidence 999995 6777764 347889999999999975
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.28 E-value=1.9e-11 Score=114.12 Aligned_cols=156 Identities=13% Similarity=0.130 Sum_probs=85.2
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cC
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QG 82 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~ 82 (293)
.++|++|+++++ .++.++... ...+++|++|+++++. +..++.. ....+++|++|+++++. +..++ ..
T Consensus 25 ~~~L~~L~Ls~n-~l~~~~~~~-------~~~l~~L~~L~Ls~n~-i~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~ 93 (549)
T 2z81_A 25 TAAMKSLDLSFN-KITYIGHGD-------LRACANLQVLILKSSR-INTIEGD-AFYSLGSLEHLDLSDNH-LSSLSSSW 93 (549)
T ss_dssp CTTCCEEECCSS-CCCEECSST-------TSSCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECTTSC-CCSCCHHH
T ss_pred CCCccEEECcCC-ccCccChhh-------hhcCCcccEEECCCCC-cCccChh-hccccccCCEEECCCCc-cCccCHHH
Confidence 357888888887 456554322 1237788888887763 3444322 14467788888887763 44443 33
Q ss_pred ccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEecc
Q 037794 83 IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDD 162 (293)
Q Consensus 83 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~ 162 (293)
+..+++|+.|+++++. .... ..+..+..+++|+.|+++++..++.++... +..+++|++|++++
T Consensus 94 ~~~l~~L~~L~Ls~n~-l~~~------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~---~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNP-YQTL------------GVTSLFPNLTNLQTLRIGNVETFSEIRRID---FAGLTSLNELEIKA 157 (549)
T ss_dssp HTTCTTCCEEECTTCC-CSSS------------CSSCSCTTCTTCCEEEEEESSSCCEECTTT---TTTCCEEEEEEEEE
T ss_pred hccCCCCcEEECCCCc-cccc------------chhhhhhccCCccEEECCCCccccccCHhh---hhcccccCeeeccC
Confidence 6677888888877651 0000 111223455666666666655445444333 34556666666665
Q ss_pred CCCCCccCChhHHhccCCCCeEEecC
Q 037794 163 CANMSSAIPANLLRCLSNLRWLEVRN 188 (293)
Q Consensus 163 c~~l~~~~p~~~~~~l~~L~~L~i~~ 188 (293)
+..... .|.. +..+++|++|++.+
T Consensus 158 n~l~~~-~~~~-l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 158 LSLRNY-QSQS-LKSIRDIHHLTLHL 181 (549)
T ss_dssp TTCCEE-CTTT-TTTCSEEEEEEEEC
T ss_pred Cccccc-Chhh-hhccccCceEeccc
Confidence 543322 2322 44455555555544
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.28 E-value=5.6e-11 Score=112.64 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=29.0
Q ss_pred CCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCC
Q 037794 5 NSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRC 73 (293)
Q Consensus 5 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c 73 (293)
++|++|++++| .++.++.. +++|++|+++++. ++.++. .+++|+.|+++++
T Consensus 61 ~~L~~L~L~~N-~l~~lp~~-----------l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~Ls~N 111 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPAL-----------PPELRTLEVSGNQ-LTSLPV-----LPPGLLELSIFSN 111 (622)
T ss_dssp TTCSEEEECSC-CCSCCCCC-----------CTTCCEEEECSCC-CSCCCC-----CCTTCCEEEECSC
T ss_pred CCCcEEEecCC-CCCCCCCc-----------CCCCCEEEcCCCc-CCcCCC-----CCCCCCEEECcCC
Confidence 56777777776 45555541 5666666666653 333433 3455555555543
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.28 E-value=9.7e-12 Score=113.79 Aligned_cols=79 Identities=8% Similarity=-0.101 Sum_probs=33.4
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCC-------------CcceEeE
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFP-------------SLERVFV 70 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-------------~L~~L~i 70 (293)
.++|++|.++++ .+..+|...+. +++|++|+++++.....++.. ...+. ++++|++
T Consensus 10 ~~~L~~L~l~~n-~l~~iP~~i~~--------L~~L~~L~l~~n~~~~~~p~~--~~~l~~L~~l~l~~c~~~~l~~L~l 78 (454)
T 1jl5_A 10 NTFLQEPLRHSS-NLTEMPVEAEN--------VKSKTEYYNAWSEWERNAPPG--NGEQREMAVSRLRDCLDRQAHELEL 78 (454)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHTSCTT--SCCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred cccchhhhcccC-chhhCChhHhc--------ccchhhhhccCCcccccCCcc--cccchhcchhhhhhhhccCCCEEEe
Confidence 467888888776 55788865544 788888888776544344443 22233 3477777
Q ss_pred cCCCCccccccCccCCCCeeEEEeccc
Q 037794 71 TRCPNMKTFSQGIVSTPKLHEVQVSKK 97 (293)
Q Consensus 71 ~~c~~l~~lp~~~~~~~~L~~L~l~~c 97 (293)
++|. ++.+|.. .++|+.|+++++
T Consensus 79 ~~~~-l~~lp~~---~~~L~~L~l~~n 101 (454)
T 1jl5_A 79 NNLG-LSSLPEL---PPHLESLVASCN 101 (454)
T ss_dssp TTSC-CSCCCSC---CTTCSEEECCSS
T ss_pred cCCc-cccCCCC---cCCCCEEEccCC
Confidence 7763 5656542 367777777754
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.27 E-value=1.1e-10 Score=110.51 Aligned_cols=205 Identities=18% Similarity=0.109 Sum_probs=111.2
Q ss_pred CcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccC
Q 037794 6 SLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVS 85 (293)
Q Consensus 6 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~ 85 (293)
++++|+++++ .++.+|... .++|+.|+++++ .++.++. .+++|+.|++++| +++.+|. .
T Consensus 41 ~l~~L~ls~n-~L~~lp~~l----------~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~lp~---~ 99 (622)
T 3g06_A 41 GNAVLNVGES-GLTTLPDCL----------PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV---L 99 (622)
T ss_dssp CCCEEECCSS-CCSCCCSCC----------CTTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CCSCCCC---C
T ss_pred CCcEEEecCC-CcCccChhh----------CCCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCC-cCCcCCC---C
Confidence 5788999876 677777643 478999999887 4566655 4789999999987 4777775 6
Q ss_pred CCCeeEEEeccccccccccccCccc------hhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEE
Q 037794 86 TPKLHEVQVSKKEEDELHHWEGNKL------NSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLV 159 (293)
Q Consensus 86 ~~~L~~L~l~~c~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 159 (293)
+++|+.|+++++. .......-..+ +..+..++ ..+++|+.|+++++. ++.++. .+.+|+.|+
T Consensus 100 l~~L~~L~Ls~N~-l~~l~~~l~~L~~L~L~~N~l~~lp---~~l~~L~~L~Ls~N~-l~~l~~-------~~~~L~~L~ 167 (622)
T 3g06_A 100 PPGLLELSIFSNP-LTHLPALPSGLCKLWIFGNQLTSLP---VLPPGLQELSVSDNQ-LASLPA-------LPSELCKLW 167 (622)
T ss_dssp CTTCCEEEECSCC-CCCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-------CCTTCCEEE
T ss_pred CCCCCEEECcCCc-CCCCCCCCCCcCEEECCCCCCCcCC---CCCCCCCEEECcCCc-CCCcCC-------ccCCCCEEE
Confidence 7889999998762 11100000000 00011111 123556666665542 332221 124445555
Q ss_pred eccCCCCCccCChhHHhccCCCCeEEecCcccccccccc-ccccc-------ccccCCCCCCcccEEecCCCCCCceecc
Q 037794 160 VDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHL-EELNA-------DKEHIGPLFPRLFILRLIDLPKLKRFCN 231 (293)
Q Consensus 160 i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~-~~~~~-------~~~~~~~~f~~L~~L~l~~~~~l~~~~~ 231 (293)
++++.. +. +| ..+++|+.|++.++ .++.++.. ..+.. ....+ ..+++|++|+++++ .++.++
T Consensus 168 L~~N~l-~~-l~----~~~~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N-~L~~lp- 237 (622)
T 3g06_A 168 AYNNQL-TS-LP----MLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLP-ALPSGLKELIVSGN-RLTSLP- 237 (622)
T ss_dssp CCSSCC-SC-CC----CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCC-CCCTTCCEEECCSS-CCSCCC-
T ss_pred CCCCCC-CC-Cc----ccCCCCcEEECCCC-CCCCCCCccchhhEEECcCCcccccC-CCCCCCCEEEccCC-ccCcCC-
Confidence 544432 22 12 22356666666653 23333210 00000 00001 12367888888775 566553
Q ss_pred CCCccccCCCcceEeeecCCCcccccccc
Q 037794 232 FTGNIIEMPMLWSLTIENCPDMETFISNS 260 (293)
Q Consensus 232 ~~~~~~~l~~L~~L~i~~C~~L~~l~p~~ 260 (293)
..+++|++|++++| +++.+ |..
T Consensus 238 -----~~l~~L~~L~Ls~N-~L~~l-p~~ 259 (622)
T 3g06_A 238 -----VLPSELKELMVSGN-RLTSL-PML 259 (622)
T ss_dssp -----CCCTTCCEEECCSS-CCSCC-CCC
T ss_pred -----CCCCcCcEEECCCC-CCCcC-Ccc
Confidence 34478888888887 67777 543
No 84
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.26 E-value=1.3e-11 Score=113.00 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=34.8
Q ss_pred hccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794 121 MIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC 189 (293)
Q Consensus 121 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c 189 (293)
+..+++|++|+++++. ++.++. .+.+|++|+++++.. .. +| . +.++++|++|++.++
T Consensus 149 ~~~l~~L~~L~l~~N~-l~~lp~-------~~~~L~~L~L~~n~l-~~-l~-~-~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNS-LKKLPD-------LPPSLEFIAAGNNQL-EE-LP-E-LQNLPFLTAIYADNN 205 (454)
T ss_dssp CTTCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSSCC-SS-CC-C-CTTCTTCCEEECCSS
T ss_pred cCCCCCCCEEECCCCc-CcccCC-------CcccccEEECcCCcC-Cc-Cc-c-ccCCCCCCEEECCCC
Confidence 5667778888887753 443331 125777777777643 33 24 2 566777777777764
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.24 E-value=9.4e-11 Score=98.56 Aligned_cols=174 Identities=15% Similarity=0.181 Sum_probs=119.8
Q ss_pred CcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cCcc
Q 037794 6 SLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QGIV 84 (293)
Q Consensus 6 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~~~ 84 (293)
+.+++++++. .++.+|... .++++.|+++++. +..+... ....+++|++|+++++ .++.++ ..+.
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~----------~~~l~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 80 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGI----------PADTEKLDLQSTG-LATLSDA-TFRGLTKLTWLNLDYN-QLQTLSAGVFD 80 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCC----------CTTCCEEECTTSC-CCCCCTT-TTTTCTTCCEEECTTS-CCCCCCTTTTT
T ss_pred CCeEEecCCC-CccccCCCC----------CCCCCEEEccCCC-cCccCHh-HhcCcccCCEEECCCC-cCCccCHhHhc
Confidence 3566777664 666666543 4679999998875 3444432 2457899999999986 455444 4467
Q ss_pred CCCCeeEEEeccccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794 85 STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC 163 (293)
Q Consensus 85 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c 163 (293)
.+++|+.|+++++ .+..++ ..+..+++|+.|+++++ .++.++.+. +..+++|++|+++++
T Consensus 81 ~l~~L~~L~L~~n---------------~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 81 DLTELGTLGLANN---------------QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGV---FDRLTKLKELRLNTN 141 (251)
T ss_dssp TCTTCCEEECTTS---------------CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSS
T ss_pred cCCcCCEEECCCC---------------cccccChhHhcccCCCCEEEcCCC-cCCCcChhH---hccCCcccEEECcCC
Confidence 8999999999876 111222 22367899999999985 466555433 456899999999988
Q ss_pred CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCC
Q 037794 164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLP 224 (293)
Q Consensus 164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 224 (293)
. +..+ +...+.++++|++|++.++ .++.++. ..+. .+++|++|++.+.+
T Consensus 142 ~-l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~--------~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 142 Q-LQSI-PAGAFDKLTNLQTLSLSTN-QLQSVPH-GAFD--------RLGKLQTITLFGNQ 190 (251)
T ss_dssp C-CCCC-CTTTTTTCTTCCEEECCSS-CCSCCCT-TTTT--------TCTTCCEEECCSCC
T ss_pred c-CCcc-CHHHcCcCcCCCEEECCCC-cCCccCH-HHHh--------CCCCCCEEEeeCCc
Confidence 5 4454 6556888999999999994 5655542 1222 23899999998753
No 86
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.22 E-value=5.1e-12 Score=118.98 Aligned_cols=38 Identities=21% Similarity=0.099 Sum_probs=24.1
Q ss_pred cCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794 151 FFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC 189 (293)
Q Consensus 151 ~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c 189 (293)
.+++|++|++++|. +.+......+..+++|++|++.+|
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 35777888887777 443222334556777777777765
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.21 E-value=1.8e-10 Score=99.06 Aligned_cols=172 Identities=12% Similarity=0.187 Sum_probs=119.2
Q ss_pred cccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794 35 AFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI 114 (293)
Q Consensus 35 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 114 (293)
.+++|+.|+++++. +..++. ...+++|+.|++++| .++.++. +..+++|+.|.++++ .+
T Consensus 44 ~l~~L~~L~l~~~~-i~~~~~---~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n---------------~l 102 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSVQG---IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN---------------KV 102 (291)
T ss_dssp HHHTCCEEECTTSC-CCCCTT---GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS---------------CC
T ss_pred hcCcccEEEccCCC-cccChh---HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC---------------cC
Confidence 47788888888763 444432 457889999999886 4565554 778899999998876 11
Q ss_pred hhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccc
Q 037794 115 QKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEE 194 (293)
Q Consensus 115 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~ 194 (293)
..+ +.+..+++|+.|+++++. ++.++ . +..+++|++|++++|.. ..+ ..+..+++|+.|++++| .++.
T Consensus 103 ~~~-~~l~~l~~L~~L~L~~n~-i~~~~--~---l~~l~~L~~L~l~~n~l-~~~---~~l~~l~~L~~L~L~~N-~l~~ 170 (291)
T 1h6t_A 103 KDL-SSLKDLKKLKSLSLEHNG-ISDIN--G---LVHLPQLESLYLGNNKI-TDI---TVLSRLTKLDTLSLEDN-QISD 170 (291)
T ss_dssp CCG-GGGTTCTTCCEEECTTSC-CCCCG--G---GGGCTTCCEEECCSSCC-CCC---GGGGGCTTCSEEECCSS-CCCC
T ss_pred CCC-hhhccCCCCCEEECCCCc-CCCCh--h---hcCCCCCCEEEccCCcC-Ccc---hhhccCCCCCEEEccCC-cccc
Confidence 111 235678899999998864 44432 1 45678899999988853 332 34778899999999985 4555
Q ss_pred cccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCcccc
Q 037794 195 VLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 195 i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
++. +. .+++|++|++.++ .++++ ..+..+++|+.|++++++ +...
T Consensus 171 ~~~---l~--------~l~~L~~L~L~~N-~i~~l----~~l~~l~~L~~L~l~~n~-i~~~ 215 (291)
T 1h6t_A 171 IVP---LA--------GLTKLQNLYLSKN-HISDL----RALAGLKNLDVLELFSQE-CLNK 215 (291)
T ss_dssp CGG---GT--------TCTTCCEEECCSS-CCCBC----GGGTTCTTCSEEEEEEEE-EECC
T ss_pred chh---hc--------CCCccCEEECCCC-cCCCC----hhhccCCCCCEEECcCCc-ccCC
Confidence 432 11 2489999999886 67665 357788999999998873 4433
No 88
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.18 E-value=6.7e-12 Score=118.18 Aligned_cols=92 Identities=12% Similarity=0.103 Sum_probs=47.4
Q ss_pred CCCccEEEeccCCC-CCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceec
Q 037794 152 FNNLFKLVVDDCAN-MSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFC 230 (293)
Q Consensus 152 l~~L~~L~i~~c~~-l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~ 230 (293)
+++|++|++++|.. +.+..+..+...+++|++|++.+|. +++..- .... ..+++|++|++++|+ ++...
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-~~~~-------~~~~~L~~L~l~~n~-l~~~~ 504 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL-MEFS-------RGCPNLQKLEMRGCC-FSERA 504 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH-HHHH-------TCCTTCCEEEEESCC-CBHHH
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH-HHHH-------hcCcccCeeeccCCC-CcHHH
Confidence 46666666655542 2222223333446666666666543 222100 0000 123788888888876 54311
Q ss_pred cCCCccccCCCcceEeeecCCCccc
Q 037794 231 NFTGNIIEMPMLWSLTIENCPDMET 255 (293)
Q Consensus 231 ~~~~~~~~l~~L~~L~i~~C~~L~~ 255 (293)
. +.....+++|++|++++|+ ++.
T Consensus 505 ~-~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 505 I-AAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp H-HHHHHHCSSCCEEEEESCB-CCT
T ss_pred H-HHHHHhcCccCeeECcCCc-CCH
Confidence 0 1223467888888888885 544
No 89
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.18 E-value=6.2e-12 Score=118.40 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=23.2
Q ss_pred CcccEEecCCCCCCceeccCCCcc-ccCCCcceEeeecCCC
Q 037794 213 PRLFILRLIDLPKLKRFCNFTGNI-IEMPMLWSLTIENCPD 252 (293)
Q Consensus 213 ~~L~~L~l~~~~~l~~~~~~~~~~-~~l~~L~~L~i~~C~~ 252 (293)
++|++|++.+|. +++... ..+ ..+++|++|++++|+-
T Consensus 456 ~~L~~L~L~~~~-i~~~~~--~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 456 KKMEMLSVAFAG-DSDLGM--HHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp TTCCEEEEESCC-SSHHHH--HHHHHHCTTCCEEEEESCSC
T ss_pred hhccEeeccCCC-CcHHHH--HHHHhcCCCcCEEECcCCCC
Confidence 667777776654 332111 122 4588999999999863
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.18 E-value=1.6e-10 Score=108.39 Aligned_cols=196 Identities=16% Similarity=0.171 Sum_probs=138.9
Q ss_pred CcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccC
Q 037794 6 SLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVS 85 (293)
Q Consensus 6 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~ 85 (293)
+|++|+++++ .++.+|... +++|+.|+++++. +..++ . .+++|+.|+++++ .++.+|. +..
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l----------~~~L~~L~Ls~N~-l~~ip-~----~l~~L~~L~Ls~N-~l~~ip~-l~~ 120 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL----------PPQITVLEITQNA-LISLP-E----LPASLEYLDACDN-RLSTLPE-LPA 120 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC----------CTTCSEEECCSSC-CSCCC-C----CCTTCCEEECCSS-CCSCCCC-CCT
T ss_pred CccEEEeCCC-CCCccCHhH----------cCCCCEEECcCCC-Ccccc-c----ccCCCCEEEccCC-CCCCcch-hhc
Confidence 7889999987 566666532 5789999998874 55666 3 5789999999986 5777876 433
Q ss_pred CCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCC
Q 037794 86 TPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCAN 165 (293)
Q Consensus 86 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~ 165 (293)
+|+.|+++++ .+..++. .+++|+.|+++++. ++.++ . .+++|++|++++|.
T Consensus 121 --~L~~L~Ls~N---------------~l~~lp~---~l~~L~~L~Ls~N~-l~~lp------~-~l~~L~~L~Ls~N~- 171 (571)
T 3cvr_A 121 --SLKHLDVDNN---------------QLTMLPE---LPALLEYINADNNQ-LTMLP------E-LPTSLEVLSVRNNQ- 171 (571)
T ss_dssp --TCCEEECCSS---------------CCSCCCC---CCTTCCEEECCSSC-CSCCC------C-CCTTCCEEECCSSC-
T ss_pred --CCCEEECCCC---------------cCCCCCC---cCccccEEeCCCCc-cCcCC------C-cCCCcCEEECCCCC-
Confidence 8999999875 1222333 57899999999854 55443 2 45899999999986
Q ss_pred CCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceE
Q 037794 166 MSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSL 245 (293)
Q Consensus 166 l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L 245 (293)
+.. +|. +. ++|+.|++.++ .++.++. +.. . -....+.|+.|++.++ .++.++ ..+..+++|+.|
T Consensus 172 L~~-lp~--l~--~~L~~L~Ls~N-~L~~lp~---~~~--~-L~~~~~~L~~L~Ls~N-~l~~lp---~~l~~l~~L~~L 235 (571)
T 3cvr_A 172 LTF-LPE--LP--ESLEALDVSTN-LLESLPA---VPV--R-NHHSEETEIFFRCREN-RITHIP---ENILSLDPTCTI 235 (571)
T ss_dssp CSC-CCC--CC--TTCCEEECCSS-CCSSCCC---CC-----------CCEEEECCSS-CCCCCC---GGGGGSCTTEEE
T ss_pred CCC-cch--hh--CCCCEEECcCC-CCCchhh---HHH--h-hhcccccceEEecCCC-cceecC---HHHhcCCCCCEE
Confidence 444 365 43 89999999994 6666653 110 0 0001134499999985 677765 567779999999
Q ss_pred eeecCCCccccccccchhhcc
Q 037794 246 TIENCPDMETFISNSVLHVTT 266 (293)
Q Consensus 246 ~i~~C~~L~~l~p~~l~~l~~ 266 (293)
+++++ +++...|..++.+..
T Consensus 236 ~L~~N-~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 236 ILEDN-PLSSRIRESLSQQTA 255 (571)
T ss_dssp ECCSS-SCCHHHHHHHHHHHH
T ss_pred EeeCC-cCCCcCHHHHHHhhc
Confidence 99998 476655888888765
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.15 E-value=2.1e-11 Score=114.82 Aligned_cols=91 Identities=16% Similarity=0.049 Sum_probs=44.6
Q ss_pred CCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCC---------
Q 037794 152 FNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLID--------- 222 (293)
Q Consensus 152 l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~--------- 222 (293)
+++|++|++++|. +.+......+.++++|++|++.++..-..+. .... .+++|++|++.+
T Consensus 292 ~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~---~~~~-------~~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 292 AAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLE---VLAQ-------YCKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp GGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHH---HHHH-------HCTTCCEEEEECCCCSSTTSS
T ss_pred cCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHH---HHHH-------hCCCCCEEEeecCcccccccc
Confidence 4556666666555 3221122234556666666665321111110 0000 237788888875
Q ss_pred -CCCCceeccCCCccccCCCcceEeeecCCCccc
Q 037794 223 -LPKLKRFCNFTGNIIEMPMLWSLTIENCPDMET 255 (293)
Q Consensus 223 -~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~ 255 (293)
|..++.... ......+++|++|++ +|.+++.
T Consensus 361 ~~~~~~~~~~-~~l~~~~~~L~~L~l-~~~~l~~ 392 (592)
T 3ogk_B 361 EEGLVSQRGL-IALAQGCQELEYMAV-YVSDITN 392 (592)
T ss_dssp TTCCCCHHHH-HHHHHHCTTCSEEEE-EESCCCH
T ss_pred ccCccCHHHH-HHHHhhCccCeEEEe-ecCCccH
Confidence 666654211 011345788888888 4556654
No 92
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.14 E-value=6.8e-10 Score=104.86 Aligned_cols=195 Identities=13% Similarity=0.117 Sum_probs=94.4
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCc-------
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGN------- 108 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~------- 108 (293)
+++|+.+++++...............+.+|+.+++..+. ...++.....+++|+.+.+..+...........
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccchhhhhccccccccccccccccccc
Confidence 566666666554321111111112345666666666543 333444455667777777665421111100000
Q ss_pred --c--chhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeE
Q 037794 109 --K--LNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWL 184 (293)
Q Consensus 109 --~--~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L 184 (293)
. .+............+++|+.|+++++.....+.... +..+++|++|++++|. +..+ +...+.++++|++|
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~---~~~l~~L~~L~Ls~N~-L~~l-~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQ-LEQL-SPTAFNSLSSLQVL 523 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEE
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchh---hhhccccCEEECCCCc-cCCc-ChHHHcCCCCCCEE
Confidence 0 000000111223445666677766654333332222 4456677777777664 4443 33346667777777
Q ss_pred EecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccC-CCcceEeeec
Q 037794 185 EVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEM-PMLWSLTIEN 249 (293)
Q Consensus 185 ~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l-~~L~~L~i~~ 249 (293)
+++++ +++.++. ..+. .+++|++|++++. .++.+.. ..+..+ ++|+.|++++
T Consensus 524 ~Ls~N-~l~~l~~-~~~~--------~l~~L~~L~Ls~N-~l~~~~~--~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 524 NMSHN-NFFSLDT-FPYK--------CLNSLQVLDYSLN-HIMTSKK--QELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp ECTTS-CCCBCCC-GGGT--------TCTTCCEEECTTS-CCCBCCS--SCTTCCCTTCCEEECTT
T ss_pred ECCCC-cCCCCCh-hHHh--------CCCCCCEEECCCC-cCCCCCH--HHHHhhhCcCCEEEeeC
Confidence 77763 4544431 1111 1267777777763 4555433 445555 4677777765
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.13 E-value=2.7e-10 Score=98.04 Aligned_cols=166 Identities=19% Similarity=0.241 Sum_probs=120.8
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCc
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGI 83 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~ 83 (293)
+++|++|++++| .++.++. ...+++|+.|+++++. +..++. ...+++|+.|+++++ .++.+|. +
T Consensus 45 l~~L~~L~l~~~-~i~~~~~---------~~~l~~L~~L~L~~n~-l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~-l 108 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSVQG---------IQYLPNVTKLFLNGNK-LTDIKP---LANLKNLGWLFLDEN-KVKDLSS-L 108 (291)
T ss_dssp HHTCCEEECTTS-CCCCCTT---------GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCCGGG-G
T ss_pred cCcccEEEccCC-CcccChh---------HhcCCCCCEEEccCCc-cCCCcc---cccCCCCCEEECCCC-cCCCChh-h
Confidence 567899999987 5565542 2238999999999874 444443 458999999999987 4666644 7
Q ss_pred cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccC
Q 037794 84 VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDC 163 (293)
Q Consensus 84 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c 163 (293)
..+++|+.|+++++ .+..+ ..+..+++|+.|+++++. ++.+. . +..+++|++|++++|
T Consensus 109 ~~l~~L~~L~L~~n---------------~i~~~-~~l~~l~~L~~L~l~~n~-l~~~~--~---l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 109 KDLKKLKSLSLEHN---------------GISDI-NGLVHLPQLESLYLGNNK-ITDIT--V---LSRLTKLDTLSLEDN 166 (291)
T ss_dssp TTCTTCCEEECTTS---------------CCCCC-GGGGGCTTCCEEECCSSC-CCCCG--G---GGGCTTCSEEECCSS
T ss_pred ccCCCCCEEECCCC---------------cCCCC-hhhcCCCCCCEEEccCCc-CCcch--h---hccCCCCCEEEccCC
Confidence 88999999999987 11111 234678999999999864 55442 1 557899999999988
Q ss_pred CCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCC
Q 037794 164 ANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDL 223 (293)
Q Consensus 164 ~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 223 (293)
. +.++ +. +..+++|+.|+++++ .++.++. +. .+++|+.|++.++
T Consensus 167 ~-l~~~-~~--l~~l~~L~~L~L~~N-~i~~l~~---l~--------~l~~L~~L~l~~n 210 (291)
T 1h6t_A 167 Q-ISDI-VP--LAGLTKLQNLYLSKN-HISDLRA---LA--------GLKNLDVLELFSQ 210 (291)
T ss_dssp C-CCCC-GG--GTTCTTCCEEECCSS-CCCBCGG---GT--------TCTTCSEEEEEEE
T ss_pred c-cccc-hh--hcCCCccCEEECCCC-cCCCChh---hc--------cCCCCCEEECcCC
Confidence 5 4443 33 788999999999995 5666532 21 2489999999875
No 94
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.12 E-value=5.5e-10 Score=105.54 Aligned_cols=159 Identities=15% Similarity=0.153 Sum_probs=99.8
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ 115 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~ 115 (293)
+++|+.+++..+...... .......+++++.++++.+..-...+.....+++|+.|.++++ ....
T Consensus 419 l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N--------------~~~~ 483 (635)
T 4g8a_A 419 LEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN--------------SFQE 483 (635)
T ss_dssp CTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC--------------EEGG
T ss_pred cccccchhhhhccccccc-cccccccccccccccccccccccccccccccchhhhhhhhhhc--------------cccc
Confidence 445555555443322211 1112335566666666665333333444556677777777765 1111
Q ss_pred h-hhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccc
Q 037794 116 K-RYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEE 194 (293)
Q Consensus 116 ~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~ 194 (293)
. .+..+..+++|+.|+++++ .++.+.... +..+++|++|+++++. +..+ +...+.++++|+.|++++ +.++.
T Consensus 484 ~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~---f~~l~~L~~L~Ls~N~-l~~l-~~~~~~~l~~L~~L~Ls~-N~l~~ 556 (635)
T 4g8a_A 484 NFLPDIFTELRNLTFLDLSQC-QLEQLSPTA---FNSLSSLQVLNMSHNN-FFSL-DTFPYKCLNSLQVLDYSL-NHIMT 556 (635)
T ss_dssp GEECSCCTTCTTCCEEECTTS-CCCEECTTT---TTTCTTCCEEECTTSC-CCBC-CCGGGTTCTTCCEEECTT-SCCCB
T ss_pred ccCchhhhhccccCEEECCCC-ccCCcChHH---HcCCCCCCEEECCCCc-CCCC-ChhHHhCCCCCCEEECCC-CcCCC
Confidence 1 2234567899999999996 477776555 6688999999999885 5554 555688999999999999 55655
Q ss_pred cccccccccccccCCCCCCcccEEecCCCC
Q 037794 195 VLHLEELNADKEHIGPLFPRLFILRLIDLP 224 (293)
Q Consensus 195 i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 224 (293)
++. +.+.. .+++|++|++.+.+
T Consensus 557 ~~~-~~l~~-------l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 557 SKK-QELQH-------FPSSLAFLNLTQND 578 (635)
T ss_dssp CCS-SCTTC-------CCTTCCEEECTTCC
T ss_pred CCH-HHHHh-------hhCcCCEEEeeCCC
Confidence 542 22222 33689999998643
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.12 E-value=1.1e-10 Score=101.14 Aligned_cols=197 Identities=13% Similarity=0.077 Sum_probs=118.6
Q ss_pred cCCCcceEeEcCCCCccccccCc--cCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCc
Q 037794 61 EFPSLERVFVTRCPNMKTFSQGI--VSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRL 138 (293)
Q Consensus 61 ~~~~L~~L~i~~c~~l~~lp~~~--~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l 138 (293)
.+++|++|++++|.-....|..+ ..+++|+.|+++++.-. +. . ..... .....+++|++|+++++. +
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~------~~-~-~~~~~--~~~~~~~~L~~L~Ls~n~-l 157 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA------TG-R-SWLAE--LQQWLKPGLKVLSIAQAH-S 157 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS------ST-T-SSHHH--HHTTBCSCCCEEEEECCS-S
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccccc------ch-h-hhhHH--HHhhhccCCCEEEeeCCC-c
Confidence 45779999999886555566655 77899999999876110 00 0 00000 122468899999998865 4
Q ss_pred eEeccCCCCCcccCCCccEEEeccCCCCCc--cCChhHHhccCCCCeEEecCcccccccccc-cccccccccCCCCCCcc
Q 037794 139 KEIWHGQALPVSFFNNLFKLVVDDCANMSS--AIPANLLRCLSNLRWLEVRNCDSLEEVLHL-EELNADKEHIGPLFPRL 215 (293)
Q Consensus 139 ~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~--~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~-~~~~~~~~~~~~~f~~L 215 (293)
..++... +..+++|++|+++++..... +.+...+..+++|++|++++| .++.++.. ..... .+++|
T Consensus 158 ~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~-------~l~~L 226 (310)
T 4glp_A 158 PAFSCEQ---VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAA-------AGVQP 226 (310)
T ss_dssp CCCCTTS---CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHH-------HTCCC
T ss_pred chhhHHH---hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHh-------cCCCC
Confidence 5444333 55788999999998875432 111122357889999999985 45444321 00000 23889
Q ss_pred cEEecCCCCCCceeccCCCccccC---CCcceEeeecCCCccccccc----cchhhccCCCCCccccccccccccc
Q 037794 216 FILRLIDLPKLKRFCNFTGNIIEM---PMLWSLTIENCPDMETFISN----SVLHVTTDNKEPQKLTSEENFLLAH 284 (293)
Q Consensus 216 ~~L~l~~~~~l~~~~~~~~~~~~l---~~L~~L~i~~C~~L~~l~p~----~l~~l~~~~~~~~~l~~~~~~~~~~ 284 (293)
++|+++++ .++.+. |..+..+ ++|++|++++| +++.+ |. .++.+....+....+.....+|.+.
T Consensus 227 ~~L~Ls~N-~l~~~~--p~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~ 297 (310)
T 4glp_A 227 HSLDLSHN-SLRATV--NPSAPRCMWSSALNSLNLSFA-GLEQV-PKGLPAKLRVLDLSSNRLNRAPQPDELPEVD 297 (310)
T ss_dssp SSEECTTS-CCCCCC--CSCCSSCCCCTTCCCEECCSS-CCCSC-CSCCCSCCSCEECCSCCCCSCCCTTSCCCCS
T ss_pred CEEECCCC-CCCccc--hhhHHhccCcCcCCEEECCCC-CCCch-hhhhcCCCCEEECCCCcCCCCchhhhCCCcc
Confidence 99999885 455541 1333444 79999999987 68887 54 4555555444444433334444433
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.12 E-value=3.6e-10 Score=106.88 Aligned_cols=166 Identities=13% Similarity=0.210 Sum_probs=82.7
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ 115 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~ 115 (293)
+++|+.|.+.++. +..++. ...+++|+.|++++| .+..++. +..+++|+.|.+++| . +.
T Consensus 42 L~~L~~L~l~~n~-i~~l~~---l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~--------------l~ 100 (605)
T 1m9s_A 42 LNSIDQIIANNSD-IKSVQG---IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-K--------------IK 100 (605)
T ss_dssp HTTCCCCBCTTCC-CCCCTT---GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-C--------------CC
T ss_pred CCCCCEEECcCCC-CCCChH---HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-C--------------CC
Confidence 5556666665543 233321 335666666666654 3443433 455666666666654 0 01
Q ss_pred hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccc
Q 037794 116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEV 195 (293)
Q Consensus 116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i 195 (293)
.+ +.+..+++|+.|+++++. +..++ ++..+++|+.|++++|.. ..+ ..+..+++|+.|++++| .+..+
T Consensus 101 ~l-~~l~~l~~L~~L~Ls~N~-l~~l~-----~l~~l~~L~~L~Ls~N~l-~~l---~~l~~l~~L~~L~Ls~N-~l~~~ 168 (605)
T 1m9s_A 101 DL-SSLKDLKKLKSLSLEHNG-ISDIN-----GLVHLPQLESLYLGNNKI-TDI---TVLSRLTKLDTLSLEDN-QISDI 168 (605)
T ss_dssp CC-TTSTTCTTCCEEECTTSC-CCCCG-----GGGGCTTCSEEECCSSCC-CCC---GGGGSCTTCSEEECCSS-CCCCC
T ss_pred CC-hhhccCCCCCEEEecCCC-CCCCc-----cccCCCccCEEECCCCcc-CCc---hhhcccCCCCEEECcCC-cCCCc
Confidence 11 123455666666666543 33221 133456666666666542 221 23555666666666663 23333
Q ss_pred ccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecC
Q 037794 196 LHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC 250 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C 250 (293)
+. +. .+++|+.|+++++ .++.+ ..+..+++|+.|++++|
T Consensus 169 ~~---l~--------~l~~L~~L~Ls~N-~i~~l----~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 169 VP---LA--------GLTKLQNLYLSKN-HISDL----RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp GG---GT--------TCTTCCEEECCSS-CCCBC----GGGTTCTTCSEEECCSE
T ss_pred hh---hc--------cCCCCCEEECcCC-CCCCC----hHHccCCCCCEEEccCC
Confidence 21 11 2266666666664 44443 24555666666666655
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.11 E-value=2.6e-11 Score=108.43 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=53.1
Q ss_pred CCCCcceEeccccccceEeccccccccccccccccccceeeccccc--cccc-cccc-----cccccCCCcceEeEcCCC
Q 037794 3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLP--RLTS-FCLE-----NYTLEFPSLERVFVTRCP 74 (293)
Q Consensus 3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~-~~~~-----~~~~~~~~L~~L~i~~c~ 74 (293)
.+++|++|++++| .+........ +.....+++|++|+++++. .+.. ++.. .....+++|++|+++++.
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l---~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWL---SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHH---HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred cCCCccEEECCCC-CCCHHHHHHH---HHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 3578889999887 3332211100 0112237888888888762 2221 1111 112467888888888864
Q ss_pred Ccc----ccccCccCCCCeeEEEeccc
Q 037794 75 NMK----TFSQGIVSTPKLHEVQVSKK 97 (293)
Q Consensus 75 ~l~----~lp~~~~~~~~L~~L~l~~c 97 (293)
--. .+|..+..+++|+.|++++|
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence 322 25556677888888888877
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.08 E-value=5.6e-10 Score=105.52 Aligned_cols=168 Identities=19% Similarity=0.224 Sum_probs=121.1
Q ss_pred CCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC
Q 037794 3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG 82 (293)
Q Consensus 3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~ 82 (293)
.+++|++|++++| .+..++. +..+++|+.|+++++. +..++. ...+++|+.|++++| .+..+| .
T Consensus 41 ~L~~L~~L~l~~n-~i~~l~~---------l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~-~ 104 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSVQG---------IQYLPNVTKLFLNGNK-LTDIKP---LTNLKNLGWLFLDEN-KIKDLS-S 104 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCCTT---------GGGCTTCCEEECTTSC-CCCCGG---GGGCTTCCEEECCSS-CCCCCT-T
T ss_pred cCCCCCEEECcCC-CCCCChH---------HccCCCCCEEEeeCCC-CCCChh---hccCCCCCEEECcCC-CCCCCh-h
Confidence 3678889999887 4555542 2238999999999874 444443 458999999999997 566664 6
Q ss_pred ccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEecc
Q 037794 83 IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDD 162 (293)
Q Consensus 83 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~ 162 (293)
+..+++|+.|++++|. +..+ +.+..+++|+.|+++++. +..+. . +..+++|+.|++++
T Consensus 105 l~~l~~L~~L~Ls~N~---------------l~~l-~~l~~l~~L~~L~Ls~N~-l~~l~--~---l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNG---------------ISDI-NGLVHLPQLESLYLGNNK-ITDIT--V---LSRLTKLDTLSLED 162 (605)
T ss_dssp STTCTTCCEEECTTSC---------------CCCC-GGGGGCTTCSEEECCSSC-CCCCG--G---GGSCTTCSEEECCS
T ss_pred hccCCCCCEEEecCCC---------------CCCC-ccccCCCccCEEECCCCc-cCCch--h---hcccCCCCEEECcC
Confidence 7889999999999871 1111 235678999999999864 55442 1 55789999999998
Q ss_pred CCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCC
Q 037794 163 CANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLP 224 (293)
Q Consensus 163 c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 224 (293)
|.. ..+ +. +..+++|+.|++++| .+..++. +. .+++|+.|++.+++
T Consensus 163 N~l-~~~-~~--l~~l~~L~~L~Ls~N-~i~~l~~---l~--------~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 163 NQI-SDI-VP--LAGLTKLQNLYLSKN-HISDLRA---LA--------GLKNLDVLELFSQE 208 (605)
T ss_dssp SCC-CCC-GG--GTTCTTCCEEECCSS-CCCBCGG---GT--------TCTTCSEEECCSEE
T ss_pred CcC-CCc-hh--hccCCCCCEEECcCC-CCCCChH---Hc--------cCCCCCEEEccCCc
Confidence 864 443 32 778999999999995 4555532 21 24899999998863
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.07 E-value=2.1e-11 Score=109.06 Aligned_cols=226 Identities=15% Similarity=0.142 Sum_probs=110.5
Q ss_pred CCCCCcceEecccc--ccce-Eeccccccccccccccccccceeecccccccc----ccccccccccCCCcceEeEcCCC
Q 037794 2 GIPNSLVNLNVSYC--EKIE-EIIGHVGEEAKENRIAFNELKFLELDDLPRLT----SFCLENYTLEFPSLERVFVTRCP 74 (293)
Q Consensus 2 g~l~~L~~L~l~~c--~~l~-~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~~~~~~~~~~~~~L~~L~i~~c~ 74 (293)
..+++|++|++++| ..+. .+|.... ........+++|++|+++++..-. .++. ....+++|++|++++|.
T Consensus 57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~-~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~--~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 57 ASKKDLEIAEFSDIFTGRVKDEIPEALR-LLLQALLKCPKLHTVRLSDNAFGPTAQEPLID--FLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTCTTCCEEECCSCCTTSCGGGSHHHHH-HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH--HHHHCTTCCEEECCSSC
T ss_pred HhCCCccEEeCcccccCccccchhHHHH-HHHHHHhhCCcccEEECCCCcCCHHHHHHHHH--HHHhCCCCCEEECcCCC
Confidence 35677777777766 2221 1111110 000111236777777777654221 0111 13466777777777764
Q ss_pred Ccc----ccccCccCC---------CCeeEEEeccccccccccccCccch-hhhhhhhhhhccCCCccEEEecCCCCceE
Q 037794 75 NMK----TFSQGIVST---------PKLHEVQVSKKEEDELHHWEGNKLN-STIQKRYEEMIGFRDIERLQLSHFPRLKE 140 (293)
Q Consensus 75 ~l~----~lp~~~~~~---------~~L~~L~l~~c~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 140 (293)
--. .++..+..+ ++|+.|.+++|. +. .....+...+..+++|+.|+++++. ++.
T Consensus 134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-----------l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~ 201 (386)
T 2ca6_A 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-----------LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRP 201 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-----------CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCH
T ss_pred CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-----------CCcHHHHHHHHHHHhCCCcCEEECcCCC-CCH
Confidence 311 122222333 677777777650 00 1122233445566777777777753 331
Q ss_pred eccCCC--CCcccCCCccEEEeccCCCC----CccCChhHHhccCCCCeEEecCcccccccccc---cccccccccCCCC
Q 037794 141 IWHGQA--LPVSFFNNLFKLVVDDCANM----SSAIPANLLRCLSNLRWLEVRNCDSLEEVLHL---EELNADKEHIGPL 211 (293)
Q Consensus 141 ~~~~~~--~~~~~l~~L~~L~i~~c~~l----~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~---~~~~~~~~~~~~~ 211 (293)
...... -.+..+++|++|++++|..- .. ++. .+..+++|++|++.+|. ++..... ..+.. ..
T Consensus 202 ~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~-l~~-~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~------~~ 272 (386)
T 2ca6_A 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA-LAI-ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSK------LE 272 (386)
T ss_dssp HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH-HHH-HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHT------CS
T ss_pred hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHH-HHH-HHccCCCcCEEECCCCC-CchhhHHHHHHHHhh------cc
Confidence 110000 01345677777777777532 22 132 35667777777777754 3332100 11000 01
Q ss_pred CCcccEEecCCCCCCce-----eccCCCcc-ccCCCcceEeeecCCCcccc
Q 037794 212 FPRLFILRLIDLPKLKR-----FCNFTGNI-IEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 212 f~~L~~L~l~~~~~l~~-----~~~~~~~~-~~l~~L~~L~i~~C~~L~~l 256 (293)
+++|++|++.++ .++. ++ ..+ .++++|++|++++| +++..
T Consensus 273 ~~~L~~L~L~~n-~i~~~g~~~l~---~~l~~~l~~L~~L~l~~N-~l~~~ 318 (386)
T 2ca6_A 273 NIGLQTLRLQYN-EIELDAVRTLK---TVIDEKMPDLLFLELNGN-RFSEE 318 (386)
T ss_dssp SCCCCEEECCSS-CCBHHHHHHHH---HHHHHHCTTCCEEECTTS-BSCTT
T ss_pred CCCeEEEECcCC-cCCHHHHHHHH---HHHHhcCCCceEEEccCC-cCCcc
Confidence 377777777775 3443 33 233 45677777777776 35443
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.06 E-value=8.2e-10 Score=89.98 Aligned_cols=168 Identities=16% Similarity=0.151 Sum_probs=96.1
Q ss_pred CCCcceEeEcCCCCcccccc-CccCCCCeeEEEeccccccccccccCccchhhhhhhhh-hhccCCCccEEEecCCCCce
Q 037794 62 FPSLERVFVTRCPNMKTFSQ-GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYE-EMIGFRDIERLQLSHFPRLK 139 (293)
Q Consensus 62 ~~~L~~L~i~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~ 139 (293)
.++|++|+++++ .++.++. .+..+++|+.|+++++ .+..++. .+..+++|++|+++++. ++
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n---------------~l~~~~~~~~~~l~~L~~L~Ls~n~-l~ 89 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN---------------KLQSLPNGVFNKLTSLTYLNLSTNQ-LQ 89 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS---------------CCCCCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC---------------ccCccChhhcCCCCCcCEEECCCCc-CC
Confidence 345666666664 3444433 2345666666666654 1111111 12456667777776643 44
Q ss_pred EeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEe
Q 037794 140 EIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILR 219 (293)
Q Consensus 140 ~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~ 219 (293)
.++... +..+++|++|+++++. +..+ +...+..+++|++|++.++ .++.++. ..+. .+++|++|+
T Consensus 90 ~~~~~~---~~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~--------~l~~L~~L~ 154 (208)
T 2o6s_A 90 SLPNGV---FDKLTQLKELALNTNQ-LQSL-PDGVFDKLTQLKDLRLYQN-QLKSVPD-GVFD--------RLTSLQYIW 154 (208)
T ss_dssp CCCTTT---TTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSS-CCSCCCT-TTTT--------TCTTCCEEE
T ss_pred ccCHhH---hcCccCCCEEEcCCCc-Cccc-CHhHhccCCcCCEEECCCC-ccceeCH-HHhc--------cCCCccEEE
Confidence 443222 4466788888887775 3333 5555677888888888874 4555432 1111 237888888
Q ss_pred cCCCCCCceeccCCCccccCCCcceEeeecCCCccccccccchhhccCCCCCc
Q 037794 220 LIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVTTDNKEPQ 272 (293)
Q Consensus 220 l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~~~~~~~~ 272 (293)
+.+.+ + ...+++|+.|+++.+ +++..+|.+++.+..+...|.
T Consensus 155 l~~N~-~---------~~~~~~l~~L~~~~n-~~~g~ip~~~~~l~~~~~~C~ 196 (208)
T 2o6s_A 155 LHDNP-W---------DCTCPGIRYLSEWIN-KHSGVVRNSAGSVAPDSAKCS 196 (208)
T ss_dssp CCSCC-B---------CCCTTTTHHHHHHHH-HCTTTBBCTTSSBCTTCSBBT
T ss_pred ecCCC-e---------ecCCCCHHHHHHHHH-hCCceeeccCccccCCccccc
Confidence 87752 1 123467888888776 455434888888777555543
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.01 E-value=1e-09 Score=92.94 Aligned_cols=165 Identities=18% Similarity=0.272 Sum_probs=96.3
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ 115 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~ 115 (293)
+.+++.+.+.+. .+++++. ...+++|+.|++++| .++.+| .+..+++|+.|+++++ .+.
T Consensus 18 l~~l~~l~l~~~-~i~~~~~---~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N---------------~i~ 76 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLVS---QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN---------------QIS 76 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEEC---HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS---------------CCC
T ss_pred HHHHHHHHhcCC-Ccccccc---hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC---------------ccC
Confidence 445555555543 2333331 336677777777775 455555 5566777777777765 111
Q ss_pred hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccc
Q 037794 116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEV 195 (293)
Q Consensus 116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i 195 (293)
.+.. +..+++|+.|+++++. ++.++. ... ++|++|++++|. +..+ + .+..+++|+.|+++++ .++.+
T Consensus 77 ~~~~-l~~l~~L~~L~L~~N~-l~~l~~-----~~~-~~L~~L~L~~N~-l~~~-~--~l~~l~~L~~L~Ls~N-~i~~~ 143 (263)
T 1xeu_A 77 DLSP-LKDLTKLEELSVNRNR-LKNLNG-----IPS-ACLSRLFLDNNE-LRDT-D--SLIHLKNLEILSIRNN-KLKSI 143 (263)
T ss_dssp CCGG-GTTCSSCCEEECCSSC-CSCCTT-----CCC-SSCCEEECCSSC-CSBS-G--GGTTCTTCCEEECTTS-CCCBC
T ss_pred CChh-hccCCCCCEEECCCCc-cCCcCc-----ccc-CcccEEEccCCc-cCCC-h--hhcCcccccEEECCCC-cCCCC
Confidence 2222 4567777777777743 444331 112 677788887774 3332 2 2666777888887773 45544
Q ss_pred ccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecC
Q 037794 196 LHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC 250 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C 250 (293)
+. +. .+++|++|+++++ .++.+ ..+..+++|+.|+++++
T Consensus 144 ~~---l~--------~l~~L~~L~L~~N-~i~~~----~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 144 VM---LG--------FLSKLEVLDLHGN-EITNT----GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp GG---GG--------GCTTCCEEECTTS-CCCBC----TTSTTCCCCCEEEEEEE
T ss_pred hH---Hc--------cCCCCCEEECCCC-cCcch----HHhccCCCCCEEeCCCC
Confidence 31 11 2377778877774 45554 35566777777777775
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.01 E-value=2.6e-09 Score=88.49 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=54.3
Q ss_pred cCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccc
Q 037794 123 GFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELN 202 (293)
Q Consensus 123 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 202 (293)
.+++|+.|+++++. +..++... +..+++|++|+++++. +..+ +...+..+++|+.|++.+ ..++.++ .++.
T Consensus 62 ~l~~L~~L~L~~N~-l~~i~~~~---~~~l~~L~~L~Ls~N~-l~~l-~~~~~~~l~~L~~L~Ls~-N~l~~lp--~~~~ 132 (229)
T 3e6j_A 62 SLINLKELYLGSNQ-LGALPVGV---FDSLTQLTVLDLGTNQ-LTVL-PSAVFDRLVHLKELFMCC-NKLTELP--RGIE 132 (229)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCS-SCCCSCC--TTGG
T ss_pred CccCCcEEECCCCC-CCCcChhh---cccCCCcCEEECCCCc-CCcc-ChhHhCcchhhCeEeccC-CcccccC--cccc
Confidence 34455555554432 33333222 3345666666666553 3332 444455566666666666 3344443 1111
Q ss_pred cccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecC
Q 037794 203 ADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC 250 (293)
Q Consensus 203 ~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C 250 (293)
.+++|++|++++. .++.++. ..+..+++|+.|++++.
T Consensus 133 --------~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 133 --------RLTHLTHLALDQN-QLKSIPH--GAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp --------GCTTCSEEECCSS-CCCCCCT--TTTTTCTTCCEEECTTS
T ss_pred --------cCCCCCEEECCCC-cCCccCH--HHHhCCCCCCEEEeeCC
Confidence 1266666666663 4555433 34555666666666654
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.98 E-value=5.3e-09 Score=86.11 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=16.0
Q ss_pred CCcceEeEcCCCCcccccc-CccCCCCeeEEEecc
Q 037794 63 PSLERVFVTRCPNMKTFSQ-GIVSTPKLHEVQVSK 96 (293)
Q Consensus 63 ~~L~~L~i~~c~~l~~lp~-~~~~~~~L~~L~l~~ 96 (293)
++|+.|+++++ .++.++. .+..+++|+.|++++
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~ 65 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSN 65 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCS
T ss_pred cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCC
Confidence 45555655553 3443332 334455555555554
No 104
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=1.9e-08 Score=87.87 Aligned_cols=56 Identities=5% Similarity=0.026 Sum_probs=32.1
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cCccCCCCeeEEEec
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QGIVSTPKLHEVQVS 95 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~~~~~~~L~~L~l~ 95 (293)
+++|+.+.+.+ .++.++.. +..++++|+.+.+.+. .+..++ ..+..+.++..+...
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~-aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDA-AFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLG 156 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTT-TTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTT
T ss_pred cCCCcEEECCc--cccchhHH-HhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCc
Confidence 67777777766 45555433 2446788888888764 333333 333455666666543
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.96 E-value=3e-09 Score=83.57 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=65.7
Q ss_pred cccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCce
Q 037794 149 VSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKR 228 (293)
Q Consensus 149 ~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~ 228 (293)
+..+++|++|++++|..... +|. .+..+++|+.|++.++ .++.++....+. .+++|++|++.++ .++.
T Consensus 67 ~~~l~~L~~L~Ls~N~l~~~-~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~--------~l~~L~~L~l~~N-~l~~ 134 (168)
T 2ell_A 67 LPKLPKLKKLELSENRIFGG-LDM-LAEKLPNLTHLNLSGN-KLKDISTLEPLK--------KLECLKSLDLFNC-EVTN 134 (168)
T ss_dssp CCCCSSCCEEEEESCCCCSC-CCH-HHHHCTTCCEEECBSS-SCCSSGGGGGGS--------SCSCCCEEECCSS-GGGT
T ss_pred hccCCCCCEEECcCCcCchH-HHH-HHhhCCCCCEEeccCC-ccCcchhHHHHh--------cCCCCCEEEeeCC-cCcc
Confidence 44568888889888865443 243 4666899999999985 565554222222 2388999999886 4554
Q ss_pred eccCC-CccccCCCcceEeeecCCCccccccccc
Q 037794 229 FCNFT-GNIIEMPMLWSLTIENCPDMETFISNSV 261 (293)
Q Consensus 229 ~~~~~-~~~~~l~~L~~L~i~~C~~L~~l~p~~l 261 (293)
++... ..+..+++|++|++++| .++.+ |...
T Consensus 135 ~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~ 166 (168)
T 2ell_A 135 LNDYRESVFKLLPQLTYLDGYDR-EDQEA-PDSD 166 (168)
T ss_dssp STTHHHHHHTTCSSCCEETTEET-TSCBC-CSSS
T ss_pred hHHHHHHHHHhCccCcEecCCCC-Chhhc-cccc
Confidence 43100 14677899999999998 56677 6543
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.96 E-value=5.8e-09 Score=85.90 Aligned_cols=129 Identities=11% Similarity=0.157 Sum_probs=64.8
Q ss_pred cccceeeccccccccccccccccccCCCcceEeEcCCCCcccccc-CccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794 37 NELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQ-GIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ 115 (293)
Q Consensus 37 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~ 115 (293)
+.+++|+++++. +..+........+++|+.|+++++ .++.++. .+..+++|+.|+++++ .+.
T Consensus 32 ~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N---------------~l~ 94 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN---------------RLE 94 (220)
T ss_dssp TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS---------------CCC
T ss_pred CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC---------------ccC
Confidence 345666666643 344433222346667777777664 3444433 4556666666666654 111
Q ss_pred hhh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecC
Q 037794 116 KRY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRN 188 (293)
Q Consensus 116 ~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~ 188 (293)
.+. ..+..+++|++|+++++. +..+.... +..+++|++|+++++.. +.+ +...+..+++|+.|++.+
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~L~~N~l-~~~-~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSNR-ITCVGNDS---FIGLSSVRLLSLYDNQI-TTV-APGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTSC-CCCBCTTS---STTCTTCSEEECTTSCC-CCB-CTTTTTTCTTCCEEECCS
T ss_pred ccCHhHhcCCcCCCEEECCCCc-CCeECHhH---cCCCccCCEEECCCCcC-CEE-CHHHhcCCCCCCEEEecC
Confidence 111 123455666666666532 44333222 33456666666665532 222 223355566666666665
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.94 E-value=1.2e-08 Score=84.01 Aligned_cols=110 Identities=13% Similarity=0.212 Sum_probs=67.7
Q ss_pred ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccccc
Q 037794 122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEEL 201 (293)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 201 (293)
..+++|+.|+++++ .++.+..+. +..+++|++|+++++.. ..+ +...+.++++|++|++.+ ..++.+.. ..+
T Consensus 54 ~~l~~L~~L~L~~N-~i~~i~~~~---~~~l~~L~~L~Ls~N~l-~~~-~~~~~~~l~~L~~L~Ls~-N~l~~~~~-~~~ 125 (220)
T 2v70_A 54 KKLPQLRKINFSNN-KITDIEEGA---FEGASGVNEILLTSNRL-ENV-QHKMFKGLESLKTLMLRS-NRITCVGN-DSF 125 (220)
T ss_dssp GGCTTCCEEECCSS-CCCEECTTT---TTTCTTCCEEECCSSCC-CCC-CGGGGTTCSSCCEEECTT-SCCCCBCT-TSS
T ss_pred ccCCCCCEEECCCC-cCCEECHHH---hCCCCCCCEEECCCCcc-Ccc-CHhHhcCCcCCCEEECCC-CcCCeECH-hHc
Confidence 45566666666663 355555433 45667788888877654 332 555577778888888877 34544421 111
Q ss_pred ccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecC
Q 037794 202 NADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC 250 (293)
Q Consensus 202 ~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C 250 (293)
. .+++|++|++.+. .++.+.. ..+..+++|++|+++++
T Consensus 126 ~--------~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 126 I--------GLSSVRLLSLYDN-QITTVAP--GAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp T--------TCTTCSEEECTTS-CCCCBCT--TTTTTCTTCCEEECCSC
T ss_pred C--------CCccCCEEECCCC-cCCEECH--HHhcCCCCCCEEEecCc
Confidence 1 1377888888773 5666533 55667778888887765
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.94 E-value=3.5e-09 Score=86.21 Aligned_cols=131 Identities=16% Similarity=0.252 Sum_probs=93.2
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccC-ccCCCCeeEEEeccccccccccccCccchhhh
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG-IVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI 114 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 114 (293)
.++|++|+++++. +..++.. ....+++|++|+++++ .++.+|.. +..+++|+.|+++++ .+
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n---------------~l 88 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSLPNG-VFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN---------------QL 88 (208)
T ss_dssp CTTCSEEECCSSC-CCCCCTT-TTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS---------------CC
T ss_pred CCCCcEEEcCCCc-cCcCChh-hhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC---------------cC
Confidence 5689999998873 4445432 2347899999999986 56666544 477899999999876 11
Q ss_pred hhhhh-hhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcc
Q 037794 115 QKRYE-EMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCD 190 (293)
Q Consensus 115 ~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~ 190 (293)
..++. .+..+++|+.|+++++ .++.++... +..+++|++|+++++. +..+ +...+..+++|+.|++.+++
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~l~~N~-l~~~-~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTN-QLQSLPDGV---FDKLTQLKDLRLYQNQ-LKSV-PDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSSC-CSCC-CTTTTTTCTTCCEEECCSCC
T ss_pred CccCHhHhcCccCCCEEEcCCC-cCcccCHhH---hccCCcCCEEECCCCc-ccee-CHHHhccCCCccEEEecCCC
Confidence 12222 2367889999999885 466554333 4577999999999885 4443 65667889999999999864
No 109
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.92 E-value=1e-09 Score=100.08 Aligned_cols=233 Identities=15% Similarity=0.114 Sum_probs=105.4
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCC----CcceEeEcCCCCcc--
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFP----SLERVFVTRCPNMK-- 77 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~----~L~~L~i~~c~~l~-- 77 (293)
+++|++|++++|. +....... .+.....+++|++|+++++. +.+.........++ +|++|++++|. ++
T Consensus 27 ~~~L~~L~L~~~~-l~~~~~~~---l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~ 100 (461)
T 1z7x_W 27 LQQCQVVRLDDCG-LTEARCKD---ISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGA 100 (461)
T ss_dssp HTTCSEEEEESSC-CCHHHHHH---HHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGG
T ss_pred cCCccEEEccCCC-CCHHHHHH---HHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHH
Confidence 4567777777663 32111000 00112235777777777653 22211111112233 67888887774 33
Q ss_pred ---ccccCccCCCCeeEEEecccccccc------------------ccccCccch-hhhhhhhhhhccCCCccEEEecCC
Q 037794 78 ---TFSQGIVSTPKLHEVQVSKKEEDEL------------------HHWEGNKLN-STIQKRYEEMIGFRDIERLQLSHF 135 (293)
Q Consensus 78 ---~lp~~~~~~~~L~~L~l~~c~~~~~------------------~~~~~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~ 135 (293)
.++..+..+++|+.|+++++.-... ..+.+..+. .....+...+..+++|++|+++++
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 3455666777788887776621000 000000000 011123333445567777777664
Q ss_pred CCceEeccCCCCC---cccCCCccEEEeccCCCCCccC--ChhHHhccCCCCeEEecCcccccccccccccccccccCCC
Q 037794 136 PRLKEIWHGQALP---VSFFNNLFKLVVDDCANMSSAI--PANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGP 210 (293)
Q Consensus 136 ~~l~~~~~~~~~~---~~~l~~L~~L~i~~c~~l~~~~--p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~ 210 (293)
. +....... +. ....++|++|++++|..-...+ ....+..+++|++|++.+| .+..... ..+.. . ...
T Consensus 181 ~-i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~-~~l~~--~-~~~ 253 (461)
T 1z7x_W 181 D-INEAGVRV-LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGM-AELCP--G-LLH 253 (461)
T ss_dssp B-CHHHHHHH-HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHH-HHHHH--H-HTS
T ss_pred C-cchHHHHH-HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHH-HHHHH--H-Hhc
Confidence 4 33221111 00 0123577778877775332100 0223556778888888775 3333210 00000 0 000
Q ss_pred CCCcccEEecCCCCCCceecc--CCCccccCCCcceEeeecC
Q 037794 211 LFPRLFILRLIDLPKLKRFCN--FTGNIIEMPMLWSLTIENC 250 (293)
Q Consensus 211 ~f~~L~~L~l~~~~~l~~~~~--~~~~~~~l~~L~~L~i~~C 250 (293)
.+++|++|++.+| .++.... .+..+..+++|++|+++++
T Consensus 254 ~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 254 PSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp TTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred CCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 1266777777765 4443100 0023344566666666655
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.91 E-value=1.3e-09 Score=85.72 Aligned_cols=136 Identities=18% Similarity=0.181 Sum_probs=90.9
Q ss_pred ccccceeeccccccc-cccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794 36 FNELKFLELDDLPRL-TSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI 114 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 114 (293)
.++|+.|+++++..- ..++.. ...+++|+.|++++|. ++.+ ..+..+++|+.|+++++ ...
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~--~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N--------------~l~ 84 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL--TAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSEN--------------RIF 84 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC--CGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESC--------------CCC
T ss_pred cccCCEEECCCCCCChhhHHHH--HHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCC--------------cCc
Confidence 567888888877522 144432 4577888888888874 6655 56677888888888876 111
Q ss_pred hhhhhhhccCCCccEEEecCCCCceEecc-CCCCCcccCCCccEEEeccCCCCCccCCh---hHHhccCCCCeEEecCcc
Q 037794 115 QKRYEEMIGFRDIERLQLSHFPRLKEIWH-GQALPVSFFNNLFKLVVDDCANMSSAIPA---NLLRCLSNLRWLEVRNCD 190 (293)
Q Consensus 115 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~i~~c~~l~~~~p~---~~~~~l~~L~~L~i~~c~ 190 (293)
..++.....+++|+.|+++++. ++.++. .. +..+++|++|+++++... .. +. ..+..+++|+.|++.+|.
T Consensus 85 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~---l~~l~~L~~L~l~~N~l~-~~-~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 85 GGLDMLAEKLPNLTHLNLSGNK-LKDISTLEP---LKKLECLKSLDLFNCEVT-NL-NDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp SCCCHHHHHCTTCCEEECBSSS-CCSSGGGGG---GSSCSCCCEEECCSSGGG-TS-TTHHHHHHTTCSSCCEETTEETT
T ss_pred hHHHHHHhhCCCCCEEeccCCc-cCcchhHHH---HhcCCCCCEEEeeCCcCc-ch-HHHHHHHHHhCccCcEecCCCCC
Confidence 1123333458889999998863 555432 22 457789999999988644 32 44 468889999999999864
Q ss_pred cccccc
Q 037794 191 SLEEVL 196 (293)
Q Consensus 191 ~l~~i~ 196 (293)
+..++
T Consensus 159 -~~~~~ 163 (168)
T 2ell_A 159 -DQEAP 163 (168)
T ss_dssp -SCBCC
T ss_pred -hhhcc
Confidence 44444
No 111
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.90 E-value=1.4e-10 Score=105.70 Aligned_cols=235 Identities=15% Similarity=0.095 Sum_probs=115.1
Q ss_pred CCCcceEeccccccceEeccccccccccccccccccceeecccccccccccccccc----ccCCCcceEeEcCCCCccc-
Q 037794 4 PNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYT----LEFPSLERVFVTRCPNMKT- 78 (293)
Q Consensus 4 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~~~~~L~~L~i~~c~~l~~- 78 (293)
.++|++|++++| .++....... ......+++|++|+++++. +......... ...++|++|++++|. ++.
T Consensus 141 ~~~L~~L~L~~n-~l~~~~~~~l---~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~ 214 (461)
T 1z7x_W 141 QCRLEKLQLEYC-SLSAASCEPL---ASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSD 214 (461)
T ss_dssp TCCCCEEECTTS-CCBGGGHHHH---HHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTT
T ss_pred CCcceEEECCCC-CCCHHHHHHH---HHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHH
Confidence 457889999887 3332111000 0012225777777777764 2222111100 124567777776663 332
Q ss_pred ----cccCccCCCCeeEEEecccccccc------------------ccccCccch-hhhhhhhhhhccCCCccEEEecCC
Q 037794 79 ----FSQGIVSTPKLHEVQVSKKEEDEL------------------HHWEGNKLN-STIQKRYEEMIGFRDIERLQLSHF 135 (293)
Q Consensus 79 ----lp~~~~~~~~L~~L~l~~c~~~~~------------------~~~~~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~ 135 (293)
++..+..+++|+.|++++|.-... ..+.+..+. .....++..+..+++|+.|+++++
T Consensus 215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 344445566666666665510000 000000000 111123444455677777777765
Q ss_pred CCceEeccCCCCC---cccCCCccEEEeccCCCCCccC--ChhHHhccCCCCeEEecCcccccccccccccccccccCCC
Q 037794 136 PRLKEIWHGQALP---VSFFNNLFKLVVDDCANMSSAI--PANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGP 210 (293)
Q Consensus 136 ~~l~~~~~~~~~~---~~~l~~L~~L~i~~c~~l~~~~--p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~ 210 (293)
. ++...... +. ....++|++|++++|....... ....+..+++|++|+++++ .+.+... ..+.. ... .
T Consensus 295 ~-i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~-~~l~~--~l~-~ 367 (461)
T 1z7x_W 295 E-LGDEGARL-LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGV-RELCQ--GLG-Q 367 (461)
T ss_dssp C-CHHHHHHH-HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHH-HHHHH--HHT-S
T ss_pred C-CchHHHHH-HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccH-HHHHH--HHc-C
Confidence 3 33221111 00 1122578888888776333210 1123556788888888875 3443211 10000 000 0
Q ss_pred CCCcccEEecCCCCCCc-----eeccCCCccccCCCcceEeeecCCCcccc
Q 037794 211 LFPRLFILRLIDLPKLK-----RFCNFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 211 ~f~~L~~L~l~~~~~l~-----~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
..++|++|++.+| .++ .++ ..+..+++|++|++++| +++..
T Consensus 368 ~~~~L~~L~L~~n-~i~~~~~~~l~---~~l~~~~~L~~L~l~~N-~i~~~ 413 (461)
T 1z7x_W 368 PGSVLRVLWLADC-DVSDSSCSSLA---ATLLANHSLRELDLSNN-CLGDA 413 (461)
T ss_dssp TTCCCCEEECTTS-CCCHHHHHHHH---HHHHHCCCCCEEECCSS-SCCHH
T ss_pred CCCceEEEECCCC-CCChhhHHHHH---HHHHhCCCccEEECCCC-CCCHH
Confidence 1368899999887 455 232 45567888999999887 46543
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.90 E-value=6.5e-09 Score=87.99 Aligned_cols=143 Identities=17% Similarity=0.248 Sum_probs=81.4
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ 115 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~ 115 (293)
+++|++|+++++ .+..++ ....+++|+.|+++++ .++.++. +..+++|+.|+++++ .+.
T Consensus 40 l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N---------------~l~ 98 (263)
T 1xeu_A 40 LSGVQNFNGDNS-NIQSLA---GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN---------------RLK 98 (263)
T ss_dssp HTTCSEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS---------------CCS
T ss_pred cCcCcEEECcCC-Ccccch---HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC---------------ccC
Confidence 677777777766 344444 1446777777777765 4555544 666777777777765 111
Q ss_pred hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccc
Q 037794 116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEV 195 (293)
Q Consensus 116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i 195 (293)
.++. ... ++|+.|+++++. ++.++ . +..+++|++|+++++. ++++ + .+..+++|+.|+++++ .++.+
T Consensus 99 ~l~~-~~~-~~L~~L~L~~N~-l~~~~--~---l~~l~~L~~L~Ls~N~-i~~~-~--~l~~l~~L~~L~L~~N-~i~~~ 165 (263)
T 1xeu_A 99 NLNG-IPS-ACLSRLFLDNNE-LRDTD--S---LIHLKNLEILSIRNNK-LKSI-V--MLGFLSKLEVLDLHGN-EITNT 165 (263)
T ss_dssp CCTT-CCC-SSCCEEECCSSC-CSBSG--G---GTTCTTCCEEECTTSC-CCBC-G--GGGGCTTCCEEECTTS-CCCBC
T ss_pred CcCc-ccc-CcccEEEccCCc-cCCCh--h---hcCcccccEEECCCCc-CCCC-h--HHccCCCCCEEECCCC-cCcch
Confidence 1111 112 677777777653 44332 1 4456777777777665 3332 3 3566777777777773 34433
Q ss_pred ccccccccccccCCCCCCcccEEecCCC
Q 037794 196 LHLEELNADKEHIGPLFPRLFILRLIDL 223 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 223 (293)
..+. .+++|+.|++.+.
T Consensus 166 ---~~l~--------~l~~L~~L~l~~N 182 (263)
T 1xeu_A 166 ---GGLT--------RLKKVNWIDLTGQ 182 (263)
T ss_dssp ---TTST--------TCCCCCEEEEEEE
T ss_pred ---HHhc--------cCCCCCEEeCCCC
Confidence 1111 2367777777664
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.88 E-value=1.2e-08 Score=90.34 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=72.1
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI 114 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 114 (293)
.+.++.|+++++ .+..++.......+++|+.|+++++ .++.++ ..+..+++|+.|+++++ .+
T Consensus 38 ~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N---------------~l 100 (361)
T 2xot_A 38 PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN---------------HL 100 (361)
T ss_dssp CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS---------------CC
T ss_pred CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC---------------cC
Confidence 344666777665 3444443321115667777777664 455444 33566677777777654 11
Q ss_pred hhhhh-hhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHH---hccCCCCeEEecCcc
Q 037794 115 QKRYE-EMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLL---RCLSNLRWLEVRNCD 190 (293)
Q Consensus 115 ~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~---~~l~~L~~L~i~~c~ 190 (293)
..+.. .+..+++|+.|+++++. +..+..+. +..+++|++|+++++.. .. +|...+ ..+++|+.|++++ +
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~---~~~l~~L~~L~L~~N~l-~~-l~~~~~~~~~~l~~L~~L~L~~-N 173 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNH-IVVVDRNA---FEDMAQLQKLYLSQNQI-SR-FPVELIKDGNKLPKLMLLDLSS-N 173 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSSCC-CS-CCGGGTC----CTTCCEEECCS-S
T ss_pred CcCCHHHhCCCcCCCEEECCCCc-ccEECHHH---hCCcccCCEEECCCCcC-Ce-eCHHHhcCcccCCcCCEEECCC-C
Confidence 11111 23456677777776643 45444333 44566777777766643 33 254434 4466777777766 3
Q ss_pred cccccc
Q 037794 191 SLEEVL 196 (293)
Q Consensus 191 ~l~~i~ 196 (293)
.++.++
T Consensus 174 ~l~~l~ 179 (361)
T 2xot_A 174 KLKKLP 179 (361)
T ss_dssp CCCCCC
T ss_pred CCCccC
Confidence 444443
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.88 E-value=8.7e-10 Score=97.72 Aligned_cols=221 Identities=12% Similarity=-0.009 Sum_probs=123.4
Q ss_pred CCCCcceEeccccccceEecccccccccccccccc-ccceeecccccccccccccc---cccc-CCCcceEeEcCCCCcc
Q 037794 3 IPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFN-ELKFLELDDLPRLTSFCLEN---YTLE-FPSLERVFVTRCPNMK 77 (293)
Q Consensus 3 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~---~~~~-~~~L~~L~i~~c~~l~ 77 (293)
..++|++|++++|. ++..+..... .....++ +|++|+++++. +....... .... +++|++|++++|. ++
T Consensus 20 ~~~~L~~L~Ls~n~-l~~~~~~~l~---~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~ 93 (362)
T 3goz_A 20 IPHGVTSLDLSLNN-LYSISTVELI---QAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LS 93 (362)
T ss_dssp SCTTCCEEECTTSC-GGGSCHHHHH---HHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GG
T ss_pred CCCCceEEEccCCC-CChHHHHHHH---HHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CC
Confidence 35669999999984 5554431100 0122366 89999999874 34332211 1112 3899999999985 44
Q ss_pred ccc-c----CccCC-CCeeEEEeccccccccccccCccchhhhhhhhhhhcc-CCCccEEEecCCCCceEeccCCCCC--
Q 037794 78 TFS-Q----GIVST-PKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIG-FRDIERLQLSHFPRLKEIWHGQALP-- 148 (293)
Q Consensus 78 ~lp-~----~~~~~-~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~-- 148 (293)
..+ . .+..+ ++|+.|++++|. . .+. ....+...+.. .++|++|+++++. ++...... ++
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l-----~~~----~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~-l~~~ 161 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWND-F-----SSK----SSSEFKQAFSNLPASITSLNLRGND-LGIKSSDE-LIQI 161 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSC-G-----GGS----CHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHH-HHHH
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCc-C-----CcH----HHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHH-HHHH
Confidence 221 2 23344 799999999871 0 000 01122222344 3689999999864 44222111 10
Q ss_pred cccC-CCccEEEeccCCCCCccCChh---HHhcc-CCCCeEEecCccccccccc--c-cccccccccCCCCCCcccEEec
Q 037794 149 VSFF-NNLFKLVVDDCANMSSAIPAN---LLRCL-SNLRWLEVRNCDSLEEVLH--L-EELNADKEHIGPLFPRLFILRL 220 (293)
Q Consensus 149 ~~~l-~~L~~L~i~~c~~l~~~~p~~---~~~~l-~~L~~L~i~~c~~l~~i~~--~-~~~~~~~~~~~~~f~~L~~L~l 220 (293)
+..+ ++|++|++++|.. .+..+.. .+..+ ++|++|++++|. +..... . ..... ..++|++|++
T Consensus 162 l~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~-------~~~~L~~L~L 232 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSS-------IPNHVVSLNL 232 (362)
T ss_dssp HHTSCTTCCEEECTTSCG-GGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHH-------SCTTCCEEEC
T ss_pred HhcCCccccEeeecCCCC-chhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhc-------CCCCceEEEC
Confidence 1223 4899999998853 3322322 33445 599999999854 444110 0 11111 2258999999
Q ss_pred CCCCCCceeccC--CCccccCCCcceEeeecCC
Q 037794 221 IDLPKLKRFCNF--TGNIIEMPMLWSLTIENCP 251 (293)
Q Consensus 221 ~~~~~l~~~~~~--~~~~~~l~~L~~L~i~~C~ 251 (293)
+++ .+++.... ...+..+++|++|++++|.
T Consensus 233 s~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 233 CLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred cCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 885 45543210 0123567889999999884
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.87 E-value=1.4e-08 Score=83.60 Aligned_cols=129 Identities=10% Similarity=0.111 Sum_probs=79.7
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-ccCccCCCCeeEEEeccccccccccccCccchhhh
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTI 114 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 114 (293)
.++|+.|+++++. +..++.. ....+++|+.|+++++ .+..+ |..+..+++|+.|+++++ .+
T Consensus 31 ~~~l~~L~l~~n~-i~~i~~~-~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N---------------~l 92 (220)
T 2v9t_B 31 PETITEIRLEQNT-IKVIPPG-AFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN---------------KI 92 (220)
T ss_dssp CTTCCEEECCSSC-CCEECTT-SSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS---------------CC
T ss_pred CcCCCEEECCCCc-CCCcCHh-HhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC---------------cC
Confidence 4689999998863 4555542 2457899999999986 45544 667788888999988865 11
Q ss_pred hhhhhh-hccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecC
Q 037794 115 QKRYEE-MIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRN 188 (293)
Q Consensus 115 ~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~ 188 (293)
..++.. +..+++|+.|+++++ .++.+.... +..+++|++|+++++... .+ +...+..+++|++|++.+
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N~l~-~~-~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNAN-KINCLRVDA---FQDLHNLNLLSLYDNKLQ-TI-AKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSSCCS-CC-CTTTTTTCTTCCEEECCS
T ss_pred CccCHhHccCCCCCCEEECCCC-CCCEeCHHH---cCCCCCCCEEECCCCcCC-EE-CHHHHhCCCCCCEEEeCC
Confidence 122222 245667777777664 344443332 445566777777666433 22 434455566666666665
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.81 E-value=9.1e-09 Score=79.09 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=31.3
Q ss_pred ccccceeeccccccc-cccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccc
Q 037794 36 FNELKFLELDDLPRL-TSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKK 97 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c 97 (293)
.++|+.|+++++..- ..++.. ...+++|+.|++++| .++.+ ..+..+++|+.|+++++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGL--TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDN 74 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSC--CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSS
T ss_pred CccCeEEEccCCcCChhHHHHH--HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCC
Confidence 456666666665322 133321 345666666666665 34444 44455666666666654
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.81 E-value=1.7e-08 Score=89.38 Aligned_cols=174 Identities=17% Similarity=0.178 Sum_probs=115.8
Q ss_pred ceeeccccccccccccccccccCCCcceEeEcCCCCccccccC-cc-CCCCeeEEEeccccccccccccCccchhhhhhh
Q 037794 40 KFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQG-IV-STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKR 117 (293)
Q Consensus 40 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~-~~-~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l 117 (293)
+.+++.+. .++.+|.. -.++++.|+++++ .++.++.. +. .+++|+.|.++++ .+..+
T Consensus 21 ~~l~c~~~-~l~~iP~~----~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N---------------~i~~i 79 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQS----LPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN---------------HLNFI 79 (361)
T ss_dssp TEEECCSS-CCSSCCSS----CCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS---------------CCCEE
T ss_pred CEEEeCCC-CcCccCcc----CCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC---------------cCCcc
Confidence 44555443 45566653 2456899999986 57766544 34 7899999999875 12222
Q ss_pred h-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccc
Q 037794 118 Y-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVL 196 (293)
Q Consensus 118 ~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~ 196 (293)
. ..+..+++|+.|+++++ .++.++... +..+++|++|+++++... .+ +...+.++++|+.|++.+ +.++.++
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~L~~N~i~-~~-~~~~~~~l~~L~~L~L~~-N~l~~l~ 152 (361)
T 2xot_A 80 SSEAFVPVPNLRYLDLSSN-HLHTLDEFL---FSDLQALEVLLLYNNHIV-VV-DRNAFEDMAQLQKLYLSQ-NQISRFP 152 (361)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCEECTTT---TTTCTTCCEEECCSSCCC-EE-CTTTTTTCTTCCEEECCS-SCCCSCC
T ss_pred ChhhccCCCCCCEEECCCC-cCCcCCHHH---hCCCcCCCEEECCCCccc-EE-CHHHhCCcccCCEEECCC-CcCCeeC
Confidence 2 23467889999999985 477776544 567899999999988643 33 444588899999999998 4566665
Q ss_pred cccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCC--cceEeeecC
Q 037794 197 HLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPM--LWSLTIENC 250 (293)
Q Consensus 197 ~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~--L~~L~i~~C 250 (293)
. ..+.. ...+++|+.|++++. .++.++. ..+..++. ++.|++.++
T Consensus 153 ~-~~~~~-----~~~l~~L~~L~L~~N-~l~~l~~--~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 153 V-ELIKD-----GNKLPKLMLLDLSSN-KLKKLPL--TDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp G-GGTC---------CTTCCEEECCSS-CCCCCCH--HHHHHSCHHHHTTEECCSS
T ss_pred H-HHhcC-----cccCCcCCEEECCCC-CCCccCH--HHhhhccHhhcceEEecCC
Confidence 2 11100 012489999999884 6776643 45566676 478888774
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.80 E-value=2.6e-09 Score=82.23 Aligned_cols=82 Identities=18% Similarity=0.256 Sum_probs=58.9
Q ss_pred CCCCcceEeccccccce--EeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccc
Q 037794 3 IPNSLVNLNVSYCEKIE--EIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS 80 (293)
Q Consensus 3 ~l~~L~~L~l~~c~~l~--~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp 80 (293)
.+++|++|++++|. +. .++.... .+++|+.|+++++ .+..+ .....+++|+.|+++++.--..+|
T Consensus 15 ~~~~l~~L~l~~n~-l~~~~~~~~~~--------~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 15 TPSDVKELVLDNSR-SNEGKLEGLTD--------EFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp CGGGCSEEECTTCB-CBTTBCCSCCT--------TCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSCTH
T ss_pred CCccCeEEEccCCc-CChhHHHHHHh--------hcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccchHH
Confidence 45789999999984 44 5665333 3899999999987 45555 235689999999999975333366
Q ss_pred cCccCCCCeeEEEeccc
Q 037794 81 QGIVSTPKLHEVQVSKK 97 (293)
Q Consensus 81 ~~~~~~~~L~~L~l~~c 97 (293)
.....+++|+.|+++++
T Consensus 82 ~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp HHHHHCTTCCEEECTTS
T ss_pred HHhhhCCCCCEEECCCC
Confidence 55556777777777765
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.79 E-value=3.5e-08 Score=81.65 Aligned_cols=129 Identities=12% Similarity=0.128 Sum_probs=75.8
Q ss_pred CCCcceEeEcCCCCcccc-ccCccCCCCeeEEEeccccccccccccCccchhhhhhhhh-hhccCCCccEEEecCCCCce
Q 037794 62 FPSLERVFVTRCPNMKTF-SQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYE-EMIGFRDIERLQLSHFPRLK 139 (293)
Q Consensus 62 ~~~L~~L~i~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~ 139 (293)
.++|+.|+++++. +..+ |..+..+++|+.|+++++ .+..++. .+..+++|+.|+++++ .++
T Consensus 39 ~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N---------------~l~~i~~~~~~~l~~L~~L~Ls~N-~l~ 101 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSN---------------QLGALPVGVFDSLTQLTVLDLGTN-QLT 101 (229)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS---------------CCCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCC---------------CCCCcChhhcccCCCcCEEECCCC-cCC
Confidence 3677777777753 3333 455566777777777754 1122221 1255677777777774 455
Q ss_pred EeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEe
Q 037794 140 EIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILR 219 (293)
Q Consensus 140 ~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~ 219 (293)
.++... +..+++|++|+++++... . +|.. +..+++|+.|++.+ +.++.++. ..+. .+++|++|+
T Consensus 102 ~l~~~~---~~~l~~L~~L~Ls~N~l~-~-lp~~-~~~l~~L~~L~L~~-N~l~~~~~-~~~~--------~l~~L~~L~ 165 (229)
T 3e6j_A 102 VLPSAV---FDRLVHLKELFMCCNKLT-E-LPRG-IERLTHLTHLALDQ-NQLKSIPH-GAFD--------RLSSLTHAY 165 (229)
T ss_dssp CCCTTT---TTTCTTCCEEECCSSCCC-S-CCTT-GGGCTTCSEEECCS-SCCCCCCT-TTTT--------TCTTCCEEE
T ss_pred ccChhH---hCcchhhCeEeccCCccc-c-cCcc-cccCCCCCEEECCC-CcCCccCH-HHHh--------CCCCCCEEE
Confidence 544332 446677888888776533 3 3554 56678888888877 45555542 1111 237777887
Q ss_pred cCCC
Q 037794 220 LIDL 223 (293)
Q Consensus 220 l~~~ 223 (293)
+.+.
T Consensus 166 l~~N 169 (229)
T 3e6j_A 166 LFGN 169 (229)
T ss_dssp CTTS
T ss_pred eeCC
Confidence 7764
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.78 E-value=1.2e-09 Score=96.75 Aligned_cols=223 Identities=9% Similarity=-0.007 Sum_probs=128.5
Q ss_pred CCC-CcceEeccccccceEeccc-ccccccccccc-ccccceeeccccccccccccc---cccccC-CCcceEeEcCCCC
Q 037794 3 IPN-SLVNLNVSYCEKIEEIIGH-VGEEAKENRIA-FNELKFLELDDLPRLTSFCLE---NYTLEF-PSLERVFVTRCPN 75 (293)
Q Consensus 3 ~l~-~L~~L~l~~c~~l~~i~~~-~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~---~~~~~~-~~L~~L~i~~c~~ 75 (293)
.++ +|++|++++| .+...... ... .... +++|++|+++++. +...... .....+ ++|++|++++|.
T Consensus 48 ~~~~~L~~L~Ls~N-~l~~~~~~~l~~----~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~- 120 (362)
T 3goz_A 48 NTPASVTSLNLSGN-SLGFKNSDELVQ----ILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND- 120 (362)
T ss_dssp TCCTTCCEEECCSS-CGGGSCHHHHHH----HHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-
T ss_pred hCCCceeEEECcCC-CCCHHHHHHHHH----HHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-
Confidence 456 8999999998 44443321 111 0011 3899999999986 3333221 112244 799999999985
Q ss_pred cccccc-----CccC-CCCeeEEEeccccccccccccCccchhhhhhhhhhhccCC-CccEEEecCCCCceEeccCCCCC
Q 037794 76 MKTFSQ-----GIVS-TPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFR-DIERLQLSHFPRLKEIWHGQALP 148 (293)
Q Consensus 76 l~~lp~-----~~~~-~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~ 148 (293)
++..+. .+.. .++|+.|++++|. . .+ .....+...+..++ +|++|+++++. ++...... +.
T Consensus 121 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l-----~~----~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~-l~ 188 (362)
T 3goz_A 121 FSSKSSSEFKQAFSNLPASITSLNLRGND-L-----GI----KSSDELIQILAAIPANVNSLNLRGNN-LASKNCAE-LA 188 (362)
T ss_dssp GGGSCHHHHHHHHTTSCTTCCEEECTTSC-G-----GG----SCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHH-HH
T ss_pred CCcHHHHHHHHHHHhCCCceeEEEccCCc-C-----CH----HHHHHHHHHHhcCCccccEeeecCCC-CchhhHHH-HH
Confidence 553321 2233 4699999999871 0 00 01123444445555 99999999964 44332111 00
Q ss_pred --cccC-CCccEEEeccCCCCCcc---CChhHHhc-cCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecC
Q 037794 149 --VSFF-NNLFKLVVDDCANMSSA---IPANLLRC-LSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLI 221 (293)
Q Consensus 149 --~~~l-~~L~~L~i~~c~~l~~~---~p~~~~~~-l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~ 221 (293)
+..+ ++|++|++++|..-... ++.. +.. .++|++|+++++ .++.... +.+.. . ...+++|++|++.
T Consensus 189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~-l~~~~~~L~~L~Ls~N-~l~~~~~-~~l~~---~-~~~l~~L~~L~L~ 261 (362)
T 3goz_A 189 KFLASIPASVTSLDLSANLLGLKSYAELAYI-FSSIPNHVVSLNLCLN-CLHGPSL-ENLKL---L-KDSLKHLQTVYLD 261 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHH-HHHSCTTCCEEECCSS-CCCCCCH-HHHHH---T-TTTTTTCSEEEEE
T ss_pred HHHHhCCCCCCEEECCCCCCChhHHHHHHHH-HhcCCCCceEEECcCC-CCCcHHH-HHHHH---H-HhcCCCccEEEec
Confidence 1233 59999999988633211 1222 333 469999999995 4544321 00000 0 0123889999998
Q ss_pred CCC--C-----CceeccCCCccccCCCcceEeeecCCCccc
Q 037794 222 DLP--K-----LKRFCNFTGNIIEMPMLWSLTIENCPDMET 255 (293)
Q Consensus 222 ~~~--~-----l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~ 255 (293)
++. . +..+. ..+..+++|+.|+++++ ++..
T Consensus 262 ~n~l~~i~~~~~~~l~---~~~~~l~~L~~LdL~~N-~l~~ 298 (362)
T 3goz_A 262 YDIVKNMSKEQCKALG---AAFPNIQKIILVDKNGK-EIHP 298 (362)
T ss_dssp HHHHTTCCHHHHHHHH---TTSTTCCEEEEECTTSC-BCCG
T ss_pred cCCccccCHHHHHHHH---HHhccCCceEEEecCCC-cCCC
Confidence 874 1 22222 34557788999999887 3544
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.75 E-value=9.4e-08 Score=89.57 Aligned_cols=165 Identities=15% Similarity=0.126 Sum_probs=116.9
Q ss_pred ccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhh
Q 037794 38 ELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKR 117 (293)
Q Consensus 38 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l 117 (293)
+|+.|+++++. +..++.. -+++|+.|+++++ .++.+| ..+++|+.|+++++ .+..+
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~----l~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N---------------~l~~i 115 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDN----LPPQITVLEITQN-ALISLP---ELPASLEYLDACDN---------------RLSTL 115 (571)
T ss_dssp TCSEEECCSSC-CSCCCSC----CCTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS---------------CCSCC
T ss_pred CccEEEeCCCC-CCccCHh----HcCCCCEEECcCC-CCcccc---cccCCCCEEEccCC---------------CCCCc
Confidence 88999998874 5666654 2588999999986 577787 45799999999876 11223
Q ss_pred hhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccc
Q 037794 118 YEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLH 197 (293)
Q Consensus 118 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~ 197 (293)
+. +.. +|+.|+++++. ++.++ . .+++|+.|+++++.. +. +|. .+++|+.|++.++ .++.++.
T Consensus 116 p~-l~~--~L~~L~Ls~N~-l~~lp------~-~l~~L~~L~Ls~N~l-~~-lp~----~l~~L~~L~Ls~N-~L~~lp~ 177 (571)
T 3cvr_A 116 PE-LPA--SLKHLDVDNNQ-LTMLP------E-LPALLEYINADNNQL-TM-LPE----LPTSLEVLSVRNN-QLTFLPE 177 (571)
T ss_dssp CC-CCT--TCCEEECCSSC-CSCCC------C-CCTTCCEEECCSSCC-SC-CCC----CCTTCCEEECCSS-CCSCCCC
T ss_pred ch-hhc--CCCEEECCCCc-CCCCC------C-cCccccEEeCCCCcc-Cc-CCC----cCCCcCEEECCCC-CCCCcch
Confidence 22 222 89999999854 55443 3 568999999998864 43 354 5789999999995 4555542
Q ss_pred ccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCc-------ceEeeecCCCccccccccchhhcc
Q 037794 198 LEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPML-------WSLTIENCPDMETFISNSVLHVTT 266 (293)
Q Consensus 198 ~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L-------~~L~i~~C~~L~~l~p~~l~~l~~ 266 (293)
. . ++|+.|+++++ .++.++. +. .+| +.|++++| +++.+ |.++..+..
T Consensus 178 -----l-------~-~~L~~L~Ls~N-~L~~lp~----~~--~~L~~~~~~L~~L~Ls~N-~l~~l-p~~l~~l~~ 231 (571)
T 3cvr_A 178 -----L-------P-ESLEALDVSTN-LLESLPA----VP--VRNHHSEETEIFFRCREN-RITHI-PENILSLDP 231 (571)
T ss_dssp -----C-------C-TTCCEEECCSS-CCSSCCC----CC----------CCEEEECCSS-CCCCC-CGGGGGSCT
T ss_pred -----h-------h-CCCCEEECcCC-CCCchhh----HH--HhhhcccccceEEecCCC-cceec-CHHHhcCCC
Confidence 1 2 78999999985 6776653 22 266 99999998 79998 987766443
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.73 E-value=2.2e-09 Score=100.78 Aligned_cols=201 Identities=18% Similarity=0.177 Sum_probs=110.7
Q ss_pred CCCCCcceEeccccccceEeccccccccccccccccccceeeccccccccccc-----------cccccccCCCcceEeE
Q 037794 2 GIPNSLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFC-----------LENYTLEFPSLERVFV 70 (293)
Q Consensus 2 g~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-----------~~~~~~~~~~L~~L~i 70 (293)
...++|+.|+++++ .++.+|...+. +++|+.|+++++-.+...+ .......+++|+.|+.
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~--------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSELES--------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred ccCccceeccCChh-hHHhhHHHHHH--------HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcc
Confidence 34677888888875 66777765544 8888888875542111100 0011234555665552
Q ss_pred cCCCCcccccc------Ccc--CCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEec
Q 037794 71 TRCPNMKTFSQ------GIV--STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIW 142 (293)
Q Consensus 71 ~~c~~l~~lp~------~~~--~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 142 (293)
..+..+..++. .+. ....|+.|.++++ .+..++. +..+++|+.|+++++. ++.+|
T Consensus 417 l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n---------------~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp 479 (567)
T 1dce_A 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK---------------DLTVLCH-LEQLLLVTHLDLSHNR-LRALP 479 (567)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS---------------CCSSCCC-GGGGTTCCEEECCSSC-CCCCC
T ss_pred hhhcccchhhhhhhhcccccccCccCceEEEecCC---------------CCCCCcC-ccccccCcEeecCccc-ccccc
Confidence 11111111110 000 0134777877765 1222332 5667788888888753 55554
Q ss_pred cCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCC
Q 037794 143 HGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLID 222 (293)
Q Consensus 143 ~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~ 222 (293)
. . +..+++|+.|+++++... . +| .+.++++|+.|++++ +.++.+.....+.. +++|+.|++.+
T Consensus 480 ~-~---~~~l~~L~~L~Ls~N~l~-~-lp--~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~~--------l~~L~~L~L~~ 542 (567)
T 1dce_A 480 P-A---LAALRCLEVLQASDNALE-N-VD--GVANLPRLQELLLCN-NRLQQSAAIQPLVS--------CPRLVLLNLQG 542 (567)
T ss_dssp G-G---GGGCTTCCEEECCSSCCC-C-CG--GGTTCSSCCEEECCS-SCCCSSSTTGGGGG--------CTTCCEEECTT
T ss_pred h-h---hhcCCCCCEEECCCCCCC-C-Cc--ccCCCCCCcEEECCC-CCCCCCCCcHHHhc--------CCCCCEEEecC
Confidence 2 2 557788888888877533 3 35 377788888888887 44555420122222 37888888887
Q ss_pred CCCCceeccCCCc-cccCCCcceEe
Q 037794 223 LPKLKRFCNFTGN-IIEMPMLWSLT 246 (293)
Q Consensus 223 ~~~l~~~~~~~~~-~~~l~~L~~L~ 246 (293)
. .++.++..... ...+|+|+.|+
T Consensus 543 N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 543 N-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp S-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred C-cCCCCccHHHHHHHHCcccCccC
Confidence 4 45554321112 23478888775
No 123
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.71 E-value=3.7e-09 Score=83.46 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=61.0
Q ss_pred CCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794 153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF 232 (293)
Q Consensus 153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~ 232 (293)
.+|++|++++|. +++.... .+.++++|++|++++|..+++-.- ..+.. .. ...++|++|++++|.++++-..
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~---~~-~~~~~L~~L~Ls~C~~ITD~Gl- 132 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCL-ERLSQ---LE-NLQKSMLEMEIISCGNVTDKGI- 132 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGG-GGTTCSCCCEEEEESCTTCCHHHH-HHHHT---CH-HHHHHCCEEEEESCTTCCHHHH-
T ss_pred ceEeEEeCcCCC-ccHHHHH-HhcCCCCCCEEEeCCCCccCHHHH-HHHHh---cc-cccCCCCEEEcCCCCcCCHHHH-
Confidence 467888888886 5543222 256788888888888887766321 11111 00 0014688888888888877443
Q ss_pred CCccccCCCcceEeeecCCCcccc
Q 037794 233 TGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 233 ~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
..+..+++|++|+|++|++++..
T Consensus 133 -~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 -IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp -HHGGGCTTCCEEEEESCTTCCCH
T ss_pred -HHHhcCCCCCEEECCCCCCCCch
Confidence 45667888888888888888764
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.67 E-value=1.1e-09 Score=102.93 Aligned_cols=116 Identities=21% Similarity=0.252 Sum_probs=86.8
Q ss_pred CCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccc
Q 037794 125 RDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNAD 204 (293)
Q Consensus 125 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 204 (293)
..|+.|+++++ .++.++. +..+++|+.|+++++... . +|.. +.++++|+.|++.+ +.++.++. +.
T Consensus 441 ~~L~~L~Ls~n-~l~~lp~-----~~~l~~L~~L~Ls~N~l~-~-lp~~-~~~l~~L~~L~Ls~-N~l~~lp~---l~-- 505 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVLCH-----LEQLLLVTHLDLSHNRLR-A-LPPA-LAALRCLEVLQASD-NALENVDG---VA-- 505 (567)
T ss_dssp TTCSEEECTTS-CCSSCCC-----GGGGTTCCEEECCSSCCC-C-CCGG-GGGCTTCCEEECCS-SCCCCCGG---GT--
T ss_pred cCceEEEecCC-CCCCCcC-----ccccccCcEeecCccccc-c-cchh-hhcCCCCCEEECCC-CCCCCCcc---cC--
Confidence 46899999985 4655441 567899999999988644 4 4764 88899999999999 45666642 22
Q ss_pred cccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCccccccccchhhc
Q 037794 205 KEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVLHVT 265 (293)
Q Consensus 205 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~ 265 (293)
.+++|++|+++++ .++.+. .|..+..+++|+.|+++++ +++.+ |+....+.
T Consensus 506 ------~l~~L~~L~Ls~N-~l~~~~-~p~~l~~l~~L~~L~L~~N-~l~~~-~~~~~~l~ 556 (567)
T 1dce_A 506 ------NLPRLQELLLCNN-RLQQSA-AIQPLVSCPRLVLLNLQGN-SLCQE-EGIQERLA 556 (567)
T ss_dssp ------TCSSCCEEECCSS-CCCSSS-TTGGGGGCTTCCEEECTTS-GGGGS-SSCTTHHH
T ss_pred ------CCCCCcEEECCCC-CCCCCC-CcHHHhcCCCCCEEEecCC-cCCCC-ccHHHHHH
Confidence 2499999999985 676652 1367889999999999998 58888 76555443
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.66 E-value=9.3e-08 Score=75.61 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=63.6
Q ss_pred CccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccccccccc
Q 037794 126 DIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADK 205 (293)
Q Consensus 126 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~ 205 (293)
+|+.|+++++. ++.+ .. +..+++|++|+++++. +..+ |...+..+++|+.|+++++ .+..++....+..
T Consensus 43 ~L~~L~Ls~N~-l~~~--~~---l~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~-- 111 (176)
T 1a9n_A 43 QFDAIDFSDNE-IRKL--DG---FPLLRRLKTLLVNNNR-ICRI-GEGLDQALPDLTELILTNN-SLVELGDLDPLAS-- 111 (176)
T ss_dssp CCSEEECCSSC-CCEE--CC---CCCCSSCCEEECCSSC-CCEE-CSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGG--
T ss_pred CCCEEECCCCC-CCcc--cc---cccCCCCCEEECCCCc-cccc-CcchhhcCCCCCEEECCCC-cCCcchhhHhhhc--
Confidence 55555555532 4433 12 4456778888887775 3343 5555577888888888874 4555543222222
Q ss_pred ccCCCCCCcccEEecCCCCCCceeccCC-CccccCCCcceEeeecCC
Q 037794 206 EHIGPLFPRLFILRLIDLPKLKRFCNFT-GNIIEMPMLWSLTIENCP 251 (293)
Q Consensus 206 ~~~~~~f~~L~~L~l~~~~~l~~~~~~~-~~~~~l~~L~~L~i~~C~ 251 (293)
+++|++|++.+++ +..++... ..+..+++|+.|++++++
T Consensus 112 ------l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 112 ------LKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ------CTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ------CCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 3788888888753 44443100 026678888888888763
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.59 E-value=2.4e-07 Score=74.35 Aligned_cols=62 Identities=24% Similarity=0.251 Sum_probs=31.5
Q ss_pred ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794 122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC 189 (293)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c 189 (293)
..+++|+.|+++++ .++.++... +..+++|++|+++++... .+.| ..+..+++|++|++.++
T Consensus 75 ~~l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~L~~N~l~-~~~~-~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 75 EGASHIQELQLGEN-KIKEISNKM---FLGLHQLKTLNLYDNQIS-CVMP-GSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TTCTTCCEEECCSC-CCCEECSSS---STTCTTCCEEECCSSCCC-EECT-TSSTTCTTCCEEECTTC
T ss_pred CCcccCCEEECCCC-cCCccCHHH---hcCCCCCCEEECCCCcCC-eeCH-HHhhcCCCCCEEEeCCC
Confidence 34455555555552 244444322 344566666666665432 2222 23555666666666653
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.59 E-value=8.5e-08 Score=75.84 Aligned_cols=129 Identities=13% Similarity=0.172 Sum_probs=64.2
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ 115 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~ 115 (293)
+++|+.|+++++ .+..++. .....++|+.|+++++ .++.+ ..+..+++|+.|+++++ .+.
T Consensus 18 ~~~L~~L~l~~n-~l~~i~~--~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N---------------~l~ 77 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPVIEN--LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN---------------RIC 77 (176)
T ss_dssp TTSCEEEECTTS-CCCSCCC--GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS---------------CCC
T ss_pred cCCceEEEeeCC-CCchhHH--hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC---------------ccc
Confidence 556667776665 2333321 1122336777777665 34444 44555666666666654 111
Q ss_pred hhhhhh-ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChh---HHhccCCCCeEEecCc
Q 037794 116 KRYEEM-IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPAN---LLRCLSNLRWLEVRNC 189 (293)
Q Consensus 116 ~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~---~~~~l~~L~~L~i~~c 189 (293)
.+++.. ..+++|+.|+++++. ++.++.-. .+..+++|+.|+++++... . +|.. .+..+++|+.|++.++
T Consensus 78 ~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~--~l~~l~~L~~L~l~~N~i~-~-~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 78 RIGEGLDQALPDLTELILTNNS-LVELGDLD--PLASLKSLTYLCILRNPVT-N-KKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EECSCHHHHCTTCCEEECCSCC-CCCGGGGG--GGGGCTTCCEEECCSSGGG-G-STTHHHHHHHHCTTCSEETTEEC
T ss_pred ccCcchhhcCCCCCEEECCCCc-CCcchhhH--hhhcCCCCCEEEecCCCCC-C-cHhHHHHHHHHCCccceeCCCcC
Confidence 122111 445566666666532 33333100 1334566666666665432 2 1332 3555666666666654
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.49 E-value=8.1e-07 Score=71.38 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=27.6
Q ss_pred ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecC
Q 037794 122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRN 188 (293)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~ 188 (293)
..+++|+.|+++++ .++.+..+. +..+++|++|+++++. +..+ +...+.++++|+.|++.+
T Consensus 51 ~~l~~L~~L~Ls~N-~i~~i~~~~---f~~l~~L~~L~Ls~N~-l~~i-~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 51 SNYKHLTLIDLSNN-RISTLSNQS---FSNMTQLLTLILSYNR-LRCI-PPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp GGCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSSC-CCBC-CTTTTTTCTTCCEEECCS
T ss_pred hcccCCCEEECCCC-cCCEeCHhH---ccCCCCCCEEECCCCc-cCEe-CHHHhCCCCCCCEEECCC
Confidence 34444445544442 233333222 3344555555555543 2222 333355555555555555
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.48 E-value=6e-07 Score=72.16 Aligned_cols=106 Identities=16% Similarity=0.163 Sum_probs=69.1
Q ss_pred CCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhh-hhhccCCCccEEEecCCCCceE
Q 037794 62 FPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRY-EEMIGFRDIERLQLSHFPRLKE 140 (293)
Q Consensus 62 ~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~ 140 (293)
.++|++|+++++ .++.+|..+..+++|+.|+++++ .+..+. ..+..+++|+.|+++++ .++.
T Consensus 30 ~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N---------------~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~ 92 (193)
T 2wfh_A 30 PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN---------------RISTLSNQSFSNMTQLLTLILSYN-RLRC 92 (193)
T ss_dssp CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS---------------CCCCCCTTTTTTCTTCCEEECCSS-CCCB
T ss_pred CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC---------------cCCEeCHhHccCCCCCCEEECCCC-ccCE
Confidence 356777777764 45666666677777777777754 111111 22356777888888774 3665
Q ss_pred eccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794 141 IWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC 189 (293)
Q Consensus 141 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c 189 (293)
++... +..+++|++|+++++.. .. ++...+..+++|+.|++.+.
T Consensus 93 i~~~~---f~~l~~L~~L~L~~N~l-~~-~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 93 IPPRT---FDGLKSLRLLSLHGNDI-SV-VPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCTTT---TTTCTTCCEEECCSSCC-CB-CCTTTTTTCTTCCEEECCSS
T ss_pred eCHHH---hCCCCCCCEEECCCCCC-Ce-eChhhhhcCccccEEEeCCC
Confidence 55443 55678888888887753 33 36656777888888888874
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.48 E-value=4.6e-06 Score=74.80 Aligned_cols=76 Identities=7% Similarity=0.057 Sum_probs=40.1
Q ss_pred CcceEeccccccceEeccccccccccccccccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccC
Q 037794 6 SLVNLNVSYCEKIEEIIGHVGEEAKENRIAFNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVS 85 (293)
Q Consensus 6 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~ 85 (293)
+|+.+.+.. .++.++...-. -.+|+.+.+.+ +++.+... ...+|++|+.+.+.+ .+++.++.....
T Consensus 136 ~L~~i~l~~--~i~~I~~~aF~--------~~~L~~i~lp~--~l~~I~~~-aF~~c~~L~~l~l~~-n~l~~I~~~aF~ 201 (401)
T 4fdw_A 136 QIAKVVLNE--GLKSIGDMAFF--------NSTVQEIVFPS--TLEQLKED-IFYYCYNLKKADLSK-TKITKLPASTFV 201 (401)
T ss_dssp CCSEEECCT--TCCEECTTTTT--------TCCCCEEECCT--TCCEECSS-TTTTCTTCCEEECTT-SCCSEECTTTTT
T ss_pred CccEEEeCC--CccEECHHhcC--------CCCceEEEeCC--CccEehHH-HhhCcccCCeeecCC-CcceEechhhEe
Confidence 456666543 35555543211 12466666654 34444332 234667777777764 245555555444
Q ss_pred CCCeeEEEec
Q 037794 86 TPKLHEVQVS 95 (293)
Q Consensus 86 ~~~L~~L~l~ 95 (293)
+++|+.+.+.
T Consensus 202 ~~~L~~l~lp 211 (401)
T 4fdw_A 202 YAGIEEVLLP 211 (401)
T ss_dssp TCCCSEEECC
T ss_pred ecccCEEEeC
Confidence 5666666664
No 131
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=1.1e-07 Score=74.94 Aligned_cols=39 Identities=15% Similarity=0.346 Sum_probs=15.2
Q ss_pred CccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccc
Q 037794 154 NLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLE 193 (293)
Q Consensus 154 ~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~ 193 (293)
+|++|++++|..+++... ..+..+++|++|++++|+.++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCCCCC
Confidence 344444444444433211 112334444444444444443
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.46 E-value=5.1e-07 Score=78.67 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=53.5
Q ss_pred CCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCccc-EEecCCCCCCceec
Q 037794 152 FNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLF-ILRLIDLPKLKRFC 230 (293)
Q Consensus 152 l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~-~L~l~~~~~l~~~~ 230 (293)
+++|+++++.++. ++.+ +..++.++++|+++++.+. ++.|.. ..+.. + ++|+ ++.+.+ +++.+.
T Consensus 225 ~~~L~~l~L~~n~-i~~I-~~~aF~~~~~L~~l~l~~n--i~~I~~-~aF~~-------~-~~L~~~l~l~~--~l~~I~ 289 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTI-PDFTFAQKKYLLKIKLPHN--LKTIGQ-RVFSN-------C-GRLAGTLELPA--SVTAIE 289 (329)
T ss_dssp CTTCCEEECTTBC-CCEE-CTTTTTTCTTCCEEECCTT--CCEECT-TTTTT-------C-TTCCEEEEECT--TCCEEC
T ss_pred cCCCeEEECCCCC-ccee-cHhhhhCCCCCCEEECCcc--cceehH-HHhhC-------C-hhccEEEEEcc--cceEEc
Confidence 4677777777654 4443 6666777777777777652 555542 11112 2 6677 777766 666765
Q ss_pred cCCCccccCCCcceEeeecCCCcccc
Q 037794 231 NFTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 231 ~~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
. ..+..+++|+++++.+. +++.+
T Consensus 290 ~--~aF~~c~~L~~l~l~~n-~i~~I 312 (329)
T 3sb4_A 290 F--GAFMGCDNLRYVLATGD-KITTL 312 (329)
T ss_dssp T--TTTTTCTTEEEEEECSS-CCCEE
T ss_pred h--hhhhCCccCCEEEeCCC-ccCcc
Confidence 5 56667777777776543 45555
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.41 E-value=1.5e-06 Score=68.52 Aligned_cols=108 Identities=21% Similarity=0.282 Sum_probs=59.4
Q ss_pred CCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccc
Q 037794 125 RDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNAD 204 (293)
Q Consensus 125 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 204 (293)
++|+.|+++++. ++.++... +..+++|++|+++++. +..+ +...+.++++|+.|++.+ ..++.++. ..+.
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~-N~l~~~~~-~~~~-- 97 (177)
T 2o6r_A 28 SSATRLELESNK-LQSLPHGV---FDKLTQLTKLSLSQNQ-IQSL-PDGVFDKLTKLTILYLHE-NKLQSLPN-GVFD-- 97 (177)
T ss_dssp TTCSEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCS-SCCCCCCT-TTTT--
T ss_pred CCCcEEEeCCCc-ccEeCHHH---hcCcccccEEECCCCc-ceEe-ChhHccCCCccCEEECCC-CCccccCH-HHhh--
Confidence 344555554422 33333222 3455677777777664 3332 444456677777777777 34444432 1111
Q ss_pred cccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCC
Q 037794 205 KEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP 251 (293)
Q Consensus 205 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~ 251 (293)
.+++|++|++.+. .++.++. ..+..+++|++|++++++
T Consensus 98 ------~l~~L~~L~l~~N-~l~~~~~--~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 98 ------KLTQLKELALDTN-QLKSVPD--GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ------TCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred ------CCcccCEEECcCC-cceEeCH--HHhcCCcccCEEEecCCC
Confidence 2367777777764 5655543 334567778888877763
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.40 E-value=1.2e-05 Score=72.07 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=30.8
Q ss_pred ccceeeccccccccccccccccccCCCcceEeEcCCCCccccc-cCccCCCCeeEEEecc
Q 037794 38 ELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFS-QGIVSTPKLHEVQVSK 96 (293)
Q Consensus 38 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~~~~~~~L~~L~l~~ 96 (293)
+|+.+.+.+ +++.+.... ..+ .+|+.+.+.+ .++.++ ..+..|++|+.+.+..
T Consensus 136 ~L~~i~l~~--~i~~I~~~a-F~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 136 QIAKVVLNE--GLKSIGDMA-FFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp CCSEEECCT--TCCEECTTT-TTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTT
T ss_pred CccEEEeCC--CccEECHHh-cCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCC
Confidence 577777653 244444331 112 3677777764 566554 3446678888887764
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.39 E-value=1.6e-06 Score=69.58 Aligned_cols=106 Identities=16% Similarity=0.276 Sum_probs=48.9
Q ss_pred ccceeeccccccccccccccccccCCCcceEeEcCCCCcccc-ccCccCCCCeeEEEeccccccccccccCccchhhhhh
Q 037794 38 ELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTF-SQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQK 116 (293)
Q Consensus 38 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~ 116 (293)
+|++|+++++ .+..++.......+++|+.|+++++ .++.+ |..+..+++|+.|+++++ .+..
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N---------------~l~~ 92 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN---------------KIKE 92 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC---------------CCCE
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC---------------cCCc
Confidence 5555555554 2333333222345556666666554 23322 444555556666665543 1111
Q ss_pred hh-hhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCC
Q 037794 117 RY-EEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCA 164 (293)
Q Consensus 117 l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~ 164 (293)
+. ..+..+++|+.|+++++ .+..+.... +..+++|++|+++++.
T Consensus 93 ~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 93 ISNKMFLGLHQLKTLNLYDN-QISCVMPGS---FEHLNSLTSLNLASNP 137 (192)
T ss_dssp ECSSSSTTCTTCCEEECCSS-CCCEECTTS---STTCTTCCEEECTTCC
T ss_pred cCHHHhcCCCCCCEEECCCC-cCCeeCHHH---hhcCCCCCEEEeCCCC
Confidence 11 11234555666666553 244333222 3345556666665554
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.37 E-value=2.2e-06 Score=67.55 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=29.1
Q ss_pred cCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794 123 GFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC 189 (293)
Q Consensus 123 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c 189 (293)
.+++|+.|+++++ .++.++... +..+++|++|+++++. +..+ +...+..+++|++|++.++
T Consensus 74 ~l~~L~~L~l~~N-~l~~~~~~~---~~~l~~L~~L~l~~N~-l~~~-~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 74 KLTKLTILYLHEN-KLQSLPNGV---FDKLTQLKELALDTNQ-LKSV-PDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSSC-CSCC-CTTTTTTCTTCCEEECCSS
T ss_pred CCCccCEEECCCC-CccccCHHH---hhCCcccCEEECcCCc-ceEe-CHHHhcCCcccCEEEecCC
Confidence 4455555555543 233332221 2344566666665553 2332 4444455566666666553
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.36 E-value=4.6e-07 Score=87.48 Aligned_cols=110 Identities=21% Similarity=0.220 Sum_probs=55.8
Q ss_pred ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccccccccccc
Q 037794 122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEEL 201 (293)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 201 (293)
..++.|+.|+++++. +..++.+ +..+++|++|+++++..- . +|.. +..+++|+.|+++++ .++.++ ..+
T Consensus 221 ~~l~~L~~L~Ls~n~-l~~l~~~----~~~l~~L~~L~Ls~N~l~-~-lp~~-~~~l~~L~~L~Ls~N-~l~~lp--~~~ 289 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ-IFNISAN----IFKYDFLTRLYLNGNSLT-E-LPAE-IKNLSNLRVLDLSHN-RLTSLP--AEL 289 (727)
T ss_dssp -CCCCCCEEECTTSC-CSCCCGG----GGGCCSCSCCBCTTSCCS-C-CCGG-GGGGTTCCEEECTTS-CCSSCC--SSG
T ss_pred ccCCCCcEEECCCCC-CCCCChh----hcCCCCCCEEEeeCCcCc-c-cChh-hhCCCCCCEEeCcCC-cCCccC--hhh
Confidence 445566666666543 3333321 224566666666655433 2 2543 455666666666663 344443 112
Q ss_pred ccccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecCCCccc
Q 037794 202 NADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMET 255 (293)
Q Consensus 202 ~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C~~L~~ 255 (293)
.. + ++|++|++.++ .++.++ ..+..+++|+.|+++++ +|+.
T Consensus 290 ~~-------l-~~L~~L~L~~N-~l~~lp---~~~~~l~~L~~L~L~~N-~l~~ 330 (727)
T 4b8c_D 290 GS-------C-FQLKYFYFFDN-MVTTLP---WEFGNLCNLQFLGVEGN-PLEK 330 (727)
T ss_dssp GG-------G-TTCSEEECCSS-CCCCCC---SSTTSCTTCCCEECTTS-CCCS
T ss_pred cC-------C-CCCCEEECCCC-CCCccC---hhhhcCCCccEEeCCCC-ccCC
Confidence 11 2 56666666654 444443 34556666666666665 3443
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.23 E-value=1.1e-08 Score=82.73 Aligned_cols=107 Identities=14% Similarity=0.104 Sum_probs=57.5
Q ss_pred cccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCc
Q 037794 59 TLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRL 138 (293)
Q Consensus 59 ~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l 138 (293)
...+++|+.|+++++ .++.+| .+..+++|+.|+++++ .+..++.....+++|+.|+++++ .+
T Consensus 44 ~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n---------------~l~~l~~~~~~~~~L~~L~L~~N-~l 105 (198)
T 1ds9_A 44 LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN---------------LIKKIENLDAVADTLEELWISYN-QI 105 (198)
T ss_dssp HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE---------------EECSCSSHHHHHHHCSEEEEEEE-EC
T ss_pred HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC---------------CcccccchhhcCCcCCEEECcCC-cC
Confidence 345666666666654 344454 4555666666666654 11122222233456666666664 23
Q ss_pred eEeccCCCCCcccCCCccEEEeccCCCCCccCCh-hHHhccCCCCeEEecCcc
Q 037794 139 KEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPA-NLLRCLSNLRWLEVRNCD 190 (293)
Q Consensus 139 ~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~-~~~~~l~~L~~L~i~~c~ 190 (293)
+.++ . +..+++|++|+++++... ++ +. ..+..+++|++|++.+++
T Consensus 106 ~~l~--~---~~~l~~L~~L~l~~N~i~-~~-~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 106 ASLS--G---IEKLVNLRVLYMSNNKIT-NW-GEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp CCHH--H---HHHHHHSSEEEESEEECC-CH-HHHHHHTTTTTCSEEEECSCH
T ss_pred CcCC--c---cccCCCCCEEECCCCcCC-ch-hHHHHHhcCCCCCEEEecCCc
Confidence 3332 1 335567777777766432 21 22 346667777777777753
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.21 E-value=1.4e-06 Score=84.03 Aligned_cols=107 Identities=12% Similarity=0.128 Sum_probs=59.5
Q ss_pred ccccceeeccccccccccccccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccccccccccccCccchhhhh
Q 037794 36 FNELKFLELDDLPRLTSFCLENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQ 115 (293)
Q Consensus 36 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~ 115 (293)
+++|+.|+++++. +..++.. .+.+++|+.|+++++ .++.+|..+..+++|+.|+++++ .+.
T Consensus 223 l~~L~~L~Ls~n~-l~~l~~~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N---------------~l~ 283 (727)
T 4b8c_D 223 DQLWHALDLSNLQ-IFNISAN--IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN---------------RLT 283 (727)
T ss_dssp CCCCCEEECTTSC-CSCCCGG--GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS---------------CCS
T ss_pred CCCCcEEECCCCC-CCCCChh--hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC---------------cCC
Confidence 5666666666654 2344433 345666666666664 44466665666666666666654 122
Q ss_pred hhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCC
Q 037794 116 KRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANM 166 (293)
Q Consensus 116 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l 166 (293)
.++..+..+++|+.|+++++ .++.++.+ +..+++|+.|+++++...
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N-~l~~lp~~----~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDN-MVTTLPWE----FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSS-CCCCCCSS----TTSCTTCCCEECTTSCCC
T ss_pred ccChhhcCCCCCCEEECCCC-CCCccChh----hhcCCCccEEeCCCCccC
Confidence 33444455666666666664 34444321 445566666666666533
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.20 E-value=5.3e-05 Score=67.51 Aligned_cols=30 Identities=10% Similarity=0.258 Sum_probs=15.8
Q ss_pred ecCCCcccc-ccccchhhccCCCCCcccccc
Q 037794 248 ENCPDMETF-ISNSVLHVTTDNKEPQKLTSE 277 (293)
Q Consensus 248 ~~C~~L~~l-~p~~l~~l~~~~~~~~~l~~~ 277 (293)
.+|++|+.+ +|.++......-.+|.+|+.+
T Consensus 363 ~~C~~L~~i~lp~~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 363 QGCINLKKVELPKRLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCTTCCEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred hCCCCCCEEEECCCCEEhhheecCCCCCcEE
Confidence 346666665 566555554444445555443
No 141
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.19 E-value=2.7e-06 Score=75.25 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=32.2
Q ss_pred cccccceeecccccc--cc-ccc----cccccccCCCcceEeEcCCCCccccccCccCCCCeeEEEeccc
Q 037794 35 AFNELKFLELDDLPR--LT-SFC----LENYTLEFPSLERVFVTRCPNMKTFSQGIVSTPKLHEVQVSKK 97 (293)
Q Consensus 35 ~~~~L~~L~l~~~~~--l~-~~~----~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~L~~L~l~~c 97 (293)
.|++|+.|.+.+... .. .|. .......+|+|++|.+.++..+ .++. + ..++|+.|.+..|
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISG 203 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECS
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecC
Confidence 477888887755311 00 000 1111235678888888776333 2332 2 3677788877655
No 142
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.13 E-value=7.2e-07 Score=78.91 Aligned_cols=168 Identities=15% Similarity=0.150 Sum_probs=87.6
Q ss_pred cccCCCcceEeEcCCCC----c-----cccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccE
Q 037794 59 TLEFPSLERVFVTRCPN----M-----KTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIER 129 (293)
Q Consensus 59 ~~~~~~L~~L~i~~c~~----l-----~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~ 129 (293)
...+++|+.|.|.+... + ..+...+..+|+|+.|.+.++.. . .+.. ..+++|+.
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~--------l-------~l~~--~~~~~L~~ 197 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN--------L-------SIGK--KPRPNLKS 197 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT--------C-------BCCS--CBCTTCSE
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC--------c-------eecc--ccCCCCcE
Confidence 34678899988865311 1 11323345678888888876510 0 1111 13678888
Q ss_pred EEecCCCCceEeccCCCCCcccCCCccEEEeccCCC-------CCccCChhHHhccCCCCeEEecCcccccccccccccc
Q 037794 130 LQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCAN-------MSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELN 202 (293)
Q Consensus 130 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~-------l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 202 (293)
|.+..+. +....... +....+++|++|+++.+.. ..++-+.-....+|+|+.|++.+|.--..... .+.
T Consensus 198 L~L~~~~-l~~~~l~~-l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~--~la 273 (362)
T 2ra8_A 198 LEIISGG-LPDSVVED-ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE--MFL 273 (362)
T ss_dssp EEEECSB-CCHHHHHH-HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH--HHH
T ss_pred EEEecCC-CChHHHHH-HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH--HHH
Confidence 8887643 32211111 1122568888888863211 11110110013478888888887653221110 000
Q ss_pred cccccCCCCCCcccEEecCCCCCCceecc--CCCccccCCCcceEeeecCCCcc
Q 037794 203 ADKEHIGPLFPRLFILRLIDLPKLKRFCN--FTGNIIEMPMLWSLTIENCPDME 254 (293)
Q Consensus 203 ~~~~~~~~~f~~L~~L~l~~~~~l~~~~~--~~~~~~~l~~L~~L~i~~C~~L~ 254 (293)
. ...+|+|++|+++. ..+.+... ....+..+++|+.|++++| .+.
T Consensus 274 ~-----a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~ 320 (362)
T 2ra8_A 274 E-----SDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLS 320 (362)
T ss_dssp H-----CSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCC
T ss_pred h-----CccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCC
Confidence 0 01348888888865 45655210 0133456788888888887 354
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.05 E-value=3.2e-05 Score=60.83 Aligned_cols=96 Identities=17% Similarity=0.236 Sum_probs=64.2
Q ss_pred CCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccC
Q 037794 153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNF 232 (293)
Q Consensus 153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~ 232 (293)
++|++|+++++. +..+ +...+.++++|+.|++.+ +.++.++. ..+. .+++|++|++.+ ..++.++.
T Consensus 33 ~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~-N~l~~i~~-~~~~--------~l~~L~~L~L~~-N~l~~l~~- 98 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKL-EPGVFDHLVNLQQLYFNS-NKLTAIPT-GVFD--------KLTQLTQLDLND-NHLKSIPR- 98 (174)
T ss_dssp TTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCS-SCCCCCCT-TTTT--------TCTTCCEEECCS-SCCCCCCT-
T ss_pred CCCcEEEeCCCC-cccc-CHHHhcCCcCCCEEECCC-CCCCccCh-hHhC--------CcchhhEEECCC-CccceeCH-
Confidence 788888888776 4443 444577888899999888 46666652 1111 238888999887 46776653
Q ss_pred CCccccCCCcceEeeecCCCccccccccchhhc
Q 037794 233 TGNIIEMPMLWSLTIENCPDMETFISNSVLHVT 265 (293)
Q Consensus 233 ~~~~~~l~~L~~L~i~~C~~L~~l~p~~l~~l~ 265 (293)
..+..+++|++|++++++ +... |..+..+.
T Consensus 99 -~~~~~l~~L~~L~L~~N~-~~c~-~~~~~~l~ 128 (174)
T 2r9u_A 99 -GAFDNLKSLTHIYLYNNP-WDCE-CRDIMYLR 128 (174)
T ss_dssp -TTTTTCTTCSEEECCSSC-BCTT-BGGGHHHH
T ss_pred -HHhccccCCCEEEeCCCC-cccc-cccHHHHH
Confidence 447778899999998863 5555 54444433
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.01 E-value=3.4e-05 Score=60.43 Aligned_cols=102 Identities=18% Similarity=0.154 Sum_probs=66.4
Q ss_pred ccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccc
Q 037794 127 IERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKE 206 (293)
Q Consensus 127 L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~ 206 (293)
.+.+++++ ..++.++. .-+++|++|+++++. +..+ +...+.++++|++|++.+ +.++.++. ..+.
T Consensus 11 ~~~l~~s~-n~l~~ip~------~~~~~l~~L~L~~N~-i~~~-~~~~~~~l~~L~~L~Ls~-N~l~~l~~-~~f~---- 75 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPT------GIPTTTQVLYLYDNQ-ITKL-EPGVFDRLTQLTRLDLDN-NQLTVLPA-GVFD---- 75 (170)
T ss_dssp TTEEECTT-SCCSSCCS------CCCTTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCS-SCCCCCCT-TTTT----
T ss_pred CCEEEeCC-CCcCccCc------cCCCCCcEEEcCCCc-CCcc-ChhhhcCcccCCEEECCC-CCcCccCh-hhcc----
Confidence 34566665 33444442 223788888888775 3333 444577788899999888 45666652 1111
Q ss_pred cCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeecC
Q 037794 207 HIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC 250 (293)
Q Consensus 207 ~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~C 250 (293)
.+++|++|++.+. .++.++. ..+..+++|++|++++.
T Consensus 76 ----~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 76 ----KLTQLTQLSLNDN-QLKSIPR--GAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp ----TCTTCCEEECCSS-CCCCCCT--TTTTTCTTCCEEECCSS
T ss_pred ----CCCCCCEEECCCC-ccCEeCH--HHhcCCCCCCEEEeCCC
Confidence 2388889998884 6777654 45778889999998875
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.99 E-value=1.7e-07 Score=75.63 Aligned_cols=127 Identities=20% Similarity=0.227 Sum_probs=72.2
Q ss_pred CcceEeEcCC-CCccccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCCCCceEec
Q 037794 64 SLERVFVTRC-PNMKTFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHFPRLKEIW 142 (293)
Q Consensus 64 ~L~~L~i~~c-~~l~~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 142 (293)
.|+...+.+. +.++.+|..+..+++|+.|+++++ .+..++ .+..+++|+.|+++++. ++.++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n---------------~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~ 86 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN---------------NIEKIS-SLSGMENLRILSLGRNL-IKKIE 86 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE---------------EESCCC-CHHHHTTCCEEEEEEEE-ECSCS
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC---------------CCcccc-ccccCCCCCEEECCCCC-ccccc
Confidence 3444444432 345555556667788888888765 111222 34566788888887753 33332
Q ss_pred cCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCC
Q 037794 143 HGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLID 222 (293)
Q Consensus 143 ~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~ 222 (293)
. . ...+++|++|++++|. +..+ + .+..+++|+.|++.++ .++.++....+. .+++|++|++.+
T Consensus 87 ~-~---~~~~~~L~~L~L~~N~-l~~l-~--~~~~l~~L~~L~l~~N-~i~~~~~~~~l~--------~l~~L~~L~l~~ 149 (198)
T 1ds9_A 87 N-L---DAVADTLEELWISYNQ-IASL-S--GIEKLVNLRVLYMSNN-KITNWGEIDKLA--------ALDKLEDLLLAG 149 (198)
T ss_dssp S-H---HHHHHHCSEEEEEEEE-CCCH-H--HHHHHHHSSEEEESEE-ECCCHHHHHHHT--------TTTTCSEEEECS
T ss_pred c-h---hhcCCcCCEEECcCCc-CCcC-C--ccccCCCCCEEECCCC-cCCchhHHHHHh--------cCCCCCEEEecC
Confidence 1 1 2345778888887774 3332 3 3666788888888873 344433211111 237788888877
Q ss_pred CC
Q 037794 223 LP 224 (293)
Q Consensus 223 ~~ 224 (293)
++
T Consensus 150 N~ 151 (198)
T 1ds9_A 150 NP 151 (198)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.98 E-value=1.8e-05 Score=62.25 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=29.4
Q ss_pred ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecC
Q 037794 122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRN 188 (293)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~ 188 (293)
..+++|+.|+++++ .++.++.+. +..+++|++|+++++. ++.+ +...+..+++|+.|++.+
T Consensus 54 ~~l~~L~~L~Ls~N-~l~~i~~~~---~~~l~~L~~L~L~~N~-l~~l-~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 54 DHLVNLQQLYFNSN-KLTAIPTGV---FDKLTQLTQLDLNDNH-LKSI-PRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCSEEECCS
T ss_pred cCCcCCCEEECCCC-CCCccChhH---hCCcchhhEEECCCCc-ccee-CHHHhccccCCCEEEeCC
Confidence 34445555555542 344333222 2345566666665543 2232 444455566666666655
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.97 E-value=1.7e-05 Score=62.11 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=30.2
Q ss_pred ccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecC
Q 037794 122 IGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRN 188 (293)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~ 188 (293)
..+++|+.|+++++ .++.++.+. +..+++|++|+++++. ++.+ +...+..+++|+.|++.+
T Consensus 51 ~~l~~L~~L~Ls~N-~l~~l~~~~---f~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 51 DRLTQLTRLDLDNN-QLTVLPAGV---FDKLTQLTQLSLNDNQ-LKSI-PRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp TTCTTCSEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCS
T ss_pred cCcccCCEEECCCC-CcCccChhh---ccCCCCCCEEECCCCc-cCEe-CHHHhcCCCCCCEEEeCC
Confidence 34445555555542 244333222 3345666666665553 3332 444455566666666665
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.70 E-value=9.2e-05 Score=64.60 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=67.0
Q ss_pred hhhhhhhhccCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCccccc
Q 037794 114 IQKRYEEMIGFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLE 193 (293)
Q Consensus 114 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~ 193 (293)
+..++. +..+++|+.|++++.+.+..++.+. +..+++|++|+++++. +..+ +...+.++++|+.|++.+ +.++
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~---~~~l~~L~~L~l~~N~-l~~~-~~~~~~~l~~L~~L~l~~-N~l~ 93 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRD---LRGLGELRNLTIVKSG-LRFV-APDAFHFTPRLSRLNLSF-NALE 93 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGG---SCSCCCCSEEECCSSC-CCEE-CTTGGGSCSCCCEEECCS-SCCS
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhH---hccccCCCEEECCCCc-ccee-CHHHhcCCcCCCEEeCCC-Cccc
Confidence 455666 7788899999998766788777655 5678899999998885 5554 555588899999999998 5666
Q ss_pred ccccccccccccccCCCCCCcccEEecCCC
Q 037794 194 EVLHLEELNADKEHIGPLFPRLFILRLIDL 223 (293)
Q Consensus 194 ~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 223 (293)
.++. +... . .+|+.|.+.+.
T Consensus 94 ~~~~--~~~~-------~-~~L~~l~l~~N 113 (347)
T 2ifg_A 94 SLSW--KTVQ-------G-LSLQELVLSGN 113 (347)
T ss_dssp CCCS--TTTC-------S-CCCCEEECCSS
T ss_pred eeCH--HHcc-------c-CCceEEEeeCC
Confidence 6652 1111 2 23888888773
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.69 E-value=8.5e-06 Score=72.30 Aligned_cols=37 Identities=16% Similarity=0.019 Sum_probs=17.1
Q ss_pred CCCccEEEeccCCCCCccC---ChhHHhccCCCCeEEecCc
Q 037794 152 FNNLFKLVVDDCANMSSAI---PANLLRCLSNLRWLEVRNC 189 (293)
Q Consensus 152 l~~L~~L~i~~c~~l~~~~---p~~~~~~l~~L~~L~i~~c 189 (293)
.++|++|++++|. +.+.. ....+...++|++|++++|
T Consensus 182 ~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 182 NTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp CSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred CCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 3556666665554 22110 0112344455666666653
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.68 E-value=0.0024 Score=56.71 Aligned_cols=31 Identities=10% Similarity=0.112 Sum_probs=16.0
Q ss_pred CcccEEecCCCCCCceeccCCCccccCCCcceEee
Q 037794 213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTI 247 (293)
Q Consensus 213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i 247 (293)
.+|+++.+-+ +++.+.. ..+..+.+|+++.|
T Consensus 311 ~~L~~i~lp~--~v~~I~~--~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 311 ISLKSIDIPE--GITQILD--DAFAGCEQLERIAI 341 (394)
T ss_dssp TTCCEEECCT--TCCEECT--TTTTTCTTCCEEEE
T ss_pred CCcCEEEeCC--cccEehH--hHhhCCCCCCEEEE
Confidence 4556665542 4555543 44445555555554
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.67 E-value=0.0001 Score=64.36 Aligned_cols=37 Identities=8% Similarity=0.254 Sum_probs=20.9
Q ss_pred ccCCCcceEeEcCCCCccccc-cCccCCCCeeEEEecc
Q 037794 60 LEFPSLERVFVTRCPNMKTFS-QGIVSTPKLHEVQVSK 96 (293)
Q Consensus 60 ~~~~~L~~L~i~~c~~l~~lp-~~~~~~~~L~~L~l~~ 96 (293)
..+++|+.|+++++..++.+| ..+..+++|+.|++++
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~ 65 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC
Confidence 345566666666544555554 2345566666666654
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.45 E-value=0.0053 Score=54.43 Aligned_cols=104 Identities=8% Similarity=0.181 Sum_probs=62.0
Q ss_pred cCCCccEEEecCCCCceEeccCCCCCcccCCCccEEEeccCCCCCccCChhHHhccCCCCeEEecCcccccccccccccc
Q 037794 123 GFRDIERLQLSHFPRLKEIWHGQALPVSFFNNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNCDSLEEVLHLEELN 202 (293)
Q Consensus 123 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 202 (293)
.+..|+.+.+.+ .+..+..++ +....+|+.+.+. ..++.+ +..++.++.+|+.+.+.. .++.|.. ....
T Consensus 263 ~c~~L~~i~lp~--~~~~I~~~a---F~~c~~L~~i~l~--~~i~~I-~~~aF~~c~~L~~i~lp~--~v~~I~~-~aF~ 331 (394)
T 4gt6_A 263 SCAYLASVKMPD--SVVSIGTGA---FMNCPALQDIEFS--SRITEL-PESVFAGCISLKSIDIPE--GITQILD-DAFA 331 (394)
T ss_dssp TCSSCCEEECCT--TCCEECTTT---TTTCTTCCEEECC--TTCCEE-CTTTTTTCTTCCEEECCT--TCCEECT-TTTT
T ss_pred ecccccEEeccc--ccceecCcc---cccccccccccCC--Cccccc-CceeecCCCCcCEEEeCC--cccEehH-hHhh
Confidence 345555555543 133344333 4455677777774 234443 666788888888888863 3555542 2222
Q ss_pred cccccCCCCCCcccEEecCCCCCCceeccCCCccccCCCcceEeeec
Q 037794 203 ADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIEN 249 (293)
Q Consensus 203 ~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~ 249 (293)
. + .+|+++.+-+ +++.+.. ..+..+++|+.+++.+
T Consensus 332 ~-------C-~~L~~i~ip~--sv~~I~~--~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 332 G-------C-EQLERIAIPS--SVTKIPE--SAFSNCTALNNIEYSG 366 (394)
T ss_dssp T-------C-TTCCEEEECT--TCCBCCG--GGGTTCTTCCEEEESS
T ss_pred C-------C-CCCCEEEECc--ccCEEhH--hHhhCCCCCCEEEECC
Confidence 2 3 7888888853 5667655 5666777788777654
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.35 E-value=1.6e-05 Score=70.50 Aligned_cols=168 Identities=14% Similarity=0.052 Sum_probs=100.2
Q ss_pred cCCCcceEeEcCCCCccc-----cccCcc-CCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecC
Q 037794 61 EFPSLERVFVTRCPNMKT-----FSQGIV-STPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSH 134 (293)
Q Consensus 61 ~~~~L~~L~i~~c~~l~~-----lp~~~~-~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 134 (293)
-.++|+.|++++|. ++. +...+. ..++|+.|++++|. .. . .....+. ..+++|+.|++++
T Consensus 70 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~-----~----~~~~~l~---~~L~~L~~L~Ls~ 135 (372)
T 3un9_A 70 VLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LD-----P----AGLRTLL---PVFLRARKLGLQL 135 (372)
T ss_dssp HHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CC-----H----HHHHHTH---HHHHTEEEEECCS
T ss_pred HHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CC-----H----HHHHHHH---HHHHhccHhhcCC
Confidence 45789999999985 442 222222 34789999999871 00 0 1111222 2345899999999
Q ss_pred CCCceEeccCCCCC--c-ccCCCccEEEeccCCCCCccC---ChhHHhccCCCCeEEecCccccccccc---cccccccc
Q 037794 135 FPRLKEIWHGQALP--V-SFFNNLFKLVVDDCANMSSAI---PANLLRCLSNLRWLEVRNCDSLEEVLH---LEELNADK 205 (293)
Q Consensus 135 ~~~l~~~~~~~~~~--~-~~l~~L~~L~i~~c~~l~~~~---p~~~~~~l~~L~~L~i~~c~~l~~i~~---~~~~~~~~ 205 (293)
+. ++...... +. + ...++|++|++++|. +.+.. ....+...++|++|++++|. +.+... .+.+..
T Consensus 136 n~-l~~~~~~~-L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~-- 209 (372)
T 3un9_A 136 NS-LGPEACKD-LRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDR-- 209 (372)
T ss_dssp SC-CCHHHHHH-HHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGG--
T ss_pred CC-CCHHHHHH-HHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhc--
Confidence 74 54332211 10 1 234789999999996 33210 11234678999999999964 544211 011111
Q ss_pred ccCCCCCCcccEEecCCCCCCceecc--CCCccccCCCcceEeeecCCCcccc
Q 037794 206 EHIGPLFPRLFILRLIDLPKLKRFCN--FTGNIIEMPMLWSLTIENCPDMETF 256 (293)
Q Consensus 206 ~~~~~~f~~L~~L~l~~~~~l~~~~~--~~~~~~~l~~L~~L~i~~C~~L~~l 256 (293)
. ++|++|+++++ .+++... ....+...++|++|++++| .++..
T Consensus 210 -----~-~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~ 254 (372)
T 3un9_A 210 -----N-RQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELSSE 254 (372)
T ss_dssp -----C-SCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHH
T ss_pred -----C-CCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHH
Confidence 3 78999999997 4654321 0023446789999999998 46544
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.35 E-value=0.013 Score=51.53 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=28.5
Q ss_pred CcccEEecCCCCCCceeccCCCccccCCCcceEee------------ecCCCcccc-ccccchhhcc
Q 037794 213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTI------------ENCPDMETF-ISNSVLHVTT 266 (293)
Q Consensus 213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i------------~~C~~L~~l-~p~~l~~l~~ 266 (293)
++|+++.+.+ ..++.+.. ..+..+.+|+.+.+ .+|.+|+.+ +|.++..+..
T Consensus 286 ~~L~~i~l~~-~~i~~I~~--~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~~v~~I~~ 349 (379)
T 4h09_A 286 SNLTKVVMDN-SAIETLEP--RVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPKSITLIES 349 (379)
T ss_dssp TTCCEEEECC-TTCCEECT--TTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCCTTCCEECT
T ss_pred cccccccccc-cccceehh--hhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEECCccCEEch
Confidence 5566666543 23445543 44455555555554 357777776 6776665544
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.34 E-value=0.0052 Score=54.45 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=17.6
Q ss_pred ecCCCcccc-ccccchhhcc-CCCCCcccccc
Q 037794 248 ENCPDMETF-ISNSVLHVTT-DNKEPQKLTSE 277 (293)
Q Consensus 248 ~~C~~L~~l-~p~~l~~l~~-~~~~~~~l~~~ 277 (293)
++|.+|+.+ +|.++..+.. --.+|.+|+.+
T Consensus 340 ~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 340 RGCTSLSNINFPLSLRKIGANAFQGCINLKKV 371 (394)
T ss_dssp TTCTTCCEECCCTTCCEECTTTBTTCTTCCEE
T ss_pred cCCCCCCEEEECccccEehHHHhhCCCCCCEE
Confidence 356666665 5666665554 24456666655
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.16 E-value=0.042 Score=48.11 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=38.9
Q ss_pred CcccEEecCCCCCCceeccCCCccccCCCcceEee-------------ecCCCcccc-ccccchhhcc-CCCCCcccccc
Q 037794 213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTI-------------ENCPDMETF-ISNSVLHVTT-DNKEPQKLTSE 277 (293)
Q Consensus 213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i-------------~~C~~L~~l-~p~~l~~l~~-~~~~~~~l~~~ 277 (293)
.+|+.+.+.. +++.+.. ..+..+++|+++.+ .+|.+|+++ +|.+++.+.. --.+|.+|+++
T Consensus 263 ~~l~~i~l~~--~i~~i~~--~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 263 TALKTLNFYA--KVKTVPY--LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TTCCEEEECC--CCSEECT--TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCC
T ss_pred ehhccccccc--cceeccc--cccccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEE
Confidence 5677776643 4555544 44556677776655 358888887 7888777765 24456666655
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.09 E-value=0.0047 Score=48.75 Aligned_cols=117 Identities=11% Similarity=0.080 Sum_probs=59.6
Q ss_pred cCCCcceEeEcCCCCcc-----ccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCC
Q 037794 61 EFPSLERVFVTRCPNMK-----TFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHF 135 (293)
Q Consensus 61 ~~~~L~~L~i~~c~~l~-----~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 135 (293)
..++|++|++++|..+. .+...+...++|+.|++++|.-.. .....+...+...++|++|+++++
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~----------~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND----------PVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH----------HHHHHHHHHHHHCSSCCEEECCSS
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh----------HHHHHHHHHHHhCCCcCEEECcCC
Confidence 56777788887764444 233344556778888777661000 112233344455677777777775
Q ss_pred CCceEeccCCC-CCcccCCCccEEEe--ccCCCCCccC---ChhHHhccCCCCeEEecCc
Q 037794 136 PRLKEIWHGQA-LPVSFFNNLFKLVV--DDCANMSSAI---PANLLRCLSNLRWLEVRNC 189 (293)
Q Consensus 136 ~~l~~~~~~~~-~~~~~l~~L~~L~i--~~c~~l~~~~---p~~~~~~l~~L~~L~i~~c 189 (293)
. +++...... -.....++|++|++ +++. +.+-. ....+...++|++|++.++
T Consensus 104 ~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 104 F-ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp C-CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred c-CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3 333211100 01223356777777 4443 22210 1123444567777777664
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.60 E-value=0.019 Score=45.19 Aligned_cols=118 Identities=10% Similarity=0.036 Sum_probs=73.0
Q ss_pred cccccceeecccccccccccc---ccccccCCCcceEeEcCCCCcc-----ccccCccCCCCeeEEEecccccccccccc
Q 037794 35 AFNELKFLELDDLPRLTSFCL---ENYTLEFPSLERVFVTRCPNMK-----TFSQGIVSTPKLHEVQVSKKEEDELHHWE 106 (293)
Q Consensus 35 ~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~i~~c~~l~-----~lp~~~~~~~~L~~L~l~~c~~~~~~~~~ 106 (293)
..+.|++|+++++..+..... .......++|++|++++|. +. .+...+...++|+.|++++|.-.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~------ 106 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFIS------ 106 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCC------
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCC------
Confidence 478899999988744443221 1123356889999999874 43 23344456688999999876100
Q ss_pred CccchhhhhhhhhhhccCCCccEEEe--cCCCCceEeccCCC-CCcccCCCccEEEeccCC
Q 037794 107 GNKLNSTIQKRYEEMIGFRDIERLQL--SHFPRLKEIWHGQA-LPVSFFNNLFKLVVDDCA 164 (293)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~L~~L~l--~~~~~l~~~~~~~~-~~~~~l~~L~~L~i~~c~ 164 (293)
......+...+...++|++|++ ++ ..++....... ..+...++|++|++++|.
T Consensus 107 ----~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 107 ----GSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp ----HHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred ----HHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 0123345566677889999999 54 44665432110 002234789999998875
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.59 E-value=0.039 Score=46.21 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=20.4
Q ss_pred CCCccEEEeccCCCCC--ccCChhHHhccCCCCeEEecCccccccc
Q 037794 152 FNNLFKLVVDDCANMS--SAIPANLLRCLSNLRWLEVRNCDSLEEV 195 (293)
Q Consensus 152 l~~L~~L~i~~c~~l~--~~~p~~~~~~l~~L~~L~i~~c~~l~~i 195 (293)
+++|+.|+++++.... . ++ ..+..+++|+.|++++ +.+..+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~-l~-~~~~~l~~L~~L~Ls~-N~i~~~ 211 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDD-MS-SIVQKAPNLKILNLSG-NELKSE 211 (267)
T ss_dssp CTTCCEEECTTSCCCCCGG-GT-THHHHSTTCCEEECTT-SCCCSG
T ss_pred CCCCCEEECCCCCCCCCcc-ch-hHHhhCCCCCEEECCC-CccCCc
Confidence 4566666665554222 1 11 2244566666666665 444443
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.66 E-value=0.054 Score=45.35 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=44.9
Q ss_pred hccCCCCeEEecCcccccccccccccccccccCCCCCCcccEEecCCCCCCceeccCCCccccCC--CcceEeeecCCCc
Q 037794 176 RCLSNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPRLFILRLIDLPKLKRFCNFTGNIIEMP--MLWSLTIENCPDM 253 (293)
Q Consensus 176 ~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~l~--~L~~L~i~~C~~L 253 (293)
..+++|+.|++++ +.++.+........ .+++|+.|+|++ ..++++ ..+..+. +|++|.++++| +
T Consensus 167 ~~l~~L~~L~Ls~-N~l~~l~~l~~~~~-------~l~~L~~L~Ls~-N~i~~~----~~l~~l~~l~L~~L~L~~Np-l 232 (267)
T 3rw6_A 167 ENIPELLSLNLSN-NRLYRLDDMSSIVQ-------KAPNLKILNLSG-NELKSE----RELDKIKGLKLEELWLDGNS-L 232 (267)
T ss_dssp HHCTTCCEEECTT-SCCCCCGGGTTHHH-------HSTTCCEEECTT-SCCCSG----GGGGGGTTSCCSEEECTTST-T
T ss_pred hhCCCCCEEECCC-CCCCCCccchhHHh-------hCCCCCEEECCC-CccCCc----hhhhhcccCCcceEEccCCc-C
Confidence 5689999999999 56666543221111 249999999988 467665 2333334 89999999986 5
Q ss_pred c
Q 037794 254 E 254 (293)
Q Consensus 254 ~ 254 (293)
.
T Consensus 233 ~ 233 (267)
T 3rw6_A 233 C 233 (267)
T ss_dssp G
T ss_pred c
Confidence 4
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=84.28 E-value=1.3 Score=32.30 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=17.5
Q ss_pred CcccEEecCCCCCCceeccCCCccccCCCcceEeeec
Q 037794 213 PRLFILRLIDLPKLKRFCNFTGNIIEMPMLWSLTIEN 249 (293)
Q Consensus 213 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~i~~ 249 (293)
++|++|+|++ +.|+.++. ..+..+++|+.|++.+
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~--~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPP--GLLDALPALRTAHLGA 64 (130)
T ss_dssp TTCSEEECTT-SCCSSCCT--TTGGGCTTCCEEECCS
T ss_pred cCCCEEECCC-CcCCccCh--hhhhhccccCEEEecC
Confidence 3555555555 34555443 3444555555555554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=75.52 E-value=3.5 Score=29.93 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=25.0
Q ss_pred CCccEEEeccCCCCCccCChhHHhccCCCCeEEecCc
Q 037794 153 NNLFKLVVDDCANMSSAIPANLLRCLSNLRWLEVRNC 189 (293)
Q Consensus 153 ~~L~~L~i~~c~~l~~~~p~~~~~~l~~L~~L~i~~c 189 (293)
.+|++|+++++. ++. ++...+..+++|+.|++.+.
T Consensus 31 ~~l~~L~Ls~N~-l~~-l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTGNN-LTA-LPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTTSC-CSS-CCTTTGGGCTTCCEEECCSS
T ss_pred cCCCEEECCCCc-CCc-cChhhhhhccccCEEEecCC
Confidence 678888887665 444 36666777888888888764
No 163
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.19 E-value=19 Score=24.67 Aligned_cols=10 Identities=20% Similarity=0.713 Sum_probs=7.1
Q ss_pred eecCCCcccc
Q 037794 247 IENCPDMETF 256 (293)
Q Consensus 247 i~~C~~L~~l 256 (293)
..+|.+|+.+
T Consensus 39 F~~C~~L~~i 48 (100)
T 2lz0_A 39 FSGCTALEKL 48 (100)
T ss_dssp STTCTTCCCE
T ss_pred HhccCCccEE
Confidence 4677777777
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=27.45 E-value=59 Score=25.34 Aligned_cols=65 Identities=8% Similarity=0.122 Sum_probs=32.8
Q ss_pred cCCCcceEeEcCCCCcc-----ccccCccCCCCeeEEEeccccccccccccCccchhhhhhhhhhhccCCCccEEEecCC
Q 037794 61 EFPSLERVFVTRCPNMK-----TFSQGIVSTPKLHEVQVSKKEEDELHHWEGNKLNSTIQKRYEEMIGFRDIERLQLSHF 135 (293)
Q Consensus 61 ~~~~L~~L~i~~c~~l~-----~lp~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 135 (293)
.-+.|++|+++++..+. .+-..+..-+.|+.|++.+|.-.. ..-..+...+..-+.|+.|+++++
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd----------~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD----------SEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH----------HHHTTHHHHHHHCSSCCEEECCSS
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh----------HHHHHHHHHHhcCCccCeEecCCC
Confidence 34567777776543443 122333455667777776651000 111233344455566777777663
Done!