BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037795
         (227 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4IM7|A Chain A, Crystal Structure Of Fructuronate Reductase (ydfi) From E.
           Coli Cft073 (efi Target Efi-506389) Complexed With Nadh
           And D-mannonate
          Length = 506

 Score = 29.3 bits (64), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 38  ENWSLPFVKHSSILRAIEPMGVFQKMPQK----PHFNLLDGSKDMYLEGLVTGYMLTFAN 93
           E +S P ++H +   A++     QK+PQ+      ++L   SK   L   V G+M     
Sbjct: 372 ERYSNPALRHRTWQIAMDGS---QKLPQRMLDSVRWHLAHDSKFDLLALGVAGWMRYVGG 428

Query: 94  VVEQTSKLQVSDP 106
           V EQ + +++SDP
Sbjct: 429 VDEQGNPIEISDP 441


>pdb|3FRR|A Chain A, Structure Of Human Ist1(Ntd) - (Residues 1-189)(P21)
          Length = 191

 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 157 HILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIA 198
           H+L    +  ++ V L  V+  +K+LE+ K +L  K   EIA
Sbjct: 2   HMLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIA 43


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.127    0.354 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,940,917
Number of Sequences: 62578
Number of extensions: 206562
Number of successful extensions: 341
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 5
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)