BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037795
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P11046|LAMB1_DROME Laminin subunit beta-1 OS=Drosophila melanogaster GN=LanB1 PE=1 SV=4
Length = 1788
Score = 33.9 bits (76), Expect = 0.89, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 70 NLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKT 129
NL D + L G+ + + +V+Q SK + + E LNL H ++
Sbjct: 1281 NLDDIYNSLSLSGVELESLQNHSRLVQQLSKELKENGIQLQESNIEGALNLTRHAYER-- 1338
Query: 130 VHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189
+S + ++K++ +L + C +E S +KI E D + K++E+ +A+L
Sbjct: 1339 ----VSNLSTLKDEANELASN-TDRNCKRVENLS--NKIQAEADDLANNNKLIEDYRAEL 1391
Query: 190 TS 191
TS
Sbjct: 1392 TS 1393
>sp|P15924|DESP_HUMAN Desmoplakin OS=Homo sapiens GN=DSP PE=1 SV=3
Length = 2871
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 62/115 (53%), Gaps = 16/115 (13%)
Query: 92 ANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQL 151
A ++E S+LQ+S+ + LE G ++ E ++++++ E+ Q+Q
Sbjct: 1747 ATILELRSQLQISNNRT-----------LELQGL----INDLQRERENLRQEIEKFQKQA 1791
Query: 152 LEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDV 206
LE I E ++ +++ E + ++ +IK+LE+ KA+L + E E+ +KS ++
Sbjct: 1792 LEASNRIQESKNQCTQVVQERESLLVKIKVLEQDKARL-QRLEDELNRAKSTLEA 1845
>sp|Q54CU7|TPC2L_DICDI Trafficking protein particle complex subunit 2-like protein
OS=Dictyostelium discoideum GN=trappc2l PE=3 SV=1
Length = 140
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%)
Query: 31 SNESTPEENWSLPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLT 90
S+ T E L ++ H S+ + G +K+P + LL ++D + G +T +
Sbjct: 23 SSSITDENKLKLHYIVHCSLDIIEDKPGSNKKLPSDMYLGLLYPTEDYKVYGYLTNTKIK 82
Query: 91 FANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGF 125
F VV TS ++ SD F + +N S+ F
Sbjct: 83 FIIVVLDTSDIKDSDLKLFFKRLQTLFINTTSNPF 117
>sp|Q61789|LAMA3_MOUSE Laminin subunit alpha-3 OS=Mus musculus GN=Lama3 PE=1 SV=3
Length = 3333
Score = 31.6 bits (70), Expect = 4.6, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 117 LLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVV 176
L+ + G V T L +++ ++ + + L+ QLL + S+ + EL H+
Sbjct: 1842 LVKSKLQGLSVST--GALEQIRHMETQAKDLRNQLLGFRSATSSHGSKMDDLEKELSHLN 1899
Query: 177 KEIKMLEES------KAKLTSKNESEIAASKSKVDVGNENI-QNAQLDFESVA 222
+E + L+E KA+ N + S ++D+ +NI QN + + +A
Sbjct: 1900 REFETLQEKAQVNSRKAQTLYNNIDQTIQSAKELDMKIKNIVQNVHILLKQMA 1952
>sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanogaster GN=LanA PE=1 SV=2
Length = 3712
Score = 31.2 bits (69), Expect = 5.4, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 120 LESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQ-SKITVELDHVVKE 178
L+ + D+ SE++S + + + Q L I E++S ITV D VK
Sbjct: 2167 LDPNSVDLSPSKKANSELESDAKSYAKQVNQTLANAFDIRERSSTTLGNITVAYDEAVKS 2226
Query: 179 IKMLEESKAKLTSKNESEIAASKSKVDVGNENIQN 213
+E+ A + + +++ AA+ +K+D E Q+
Sbjct: 2227 ADQAKEAIASVEALSKNLEAAASTKIDAALEQAQH 2261
>sp|E9Q557|DESP_MOUSE Desmoplakin OS=Mus musculus GN=Dsp PE=3 SV=1
Length = 2883
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 61/115 (53%), Gaps = 16/115 (13%)
Query: 92 ANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQL 151
+ + E S+LQ+S+ + LE G ++ E ++++++ E+ Q+Q
Sbjct: 1759 STISELRSQLQISNNRT-----------LELQGL----INDLQRERENLRQEIEKFQKQA 1803
Query: 152 LEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDV 206
LE I E S+ +++ E + ++ +IK+LE+ KA+L + E E+ +K+ ++
Sbjct: 1804 LEASNRIQESKSQCTQVVQERESLLVKIKVLEQDKARL-QRLEDELNRAKATLEA 1857
>sp|O54874|MRCKA_RAT Serine/threonine-protein kinase MRCK alpha OS=Rattus norvegicus
GN=Cdc42bpa PE=1 SV=1
Length = 1732
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 136 EMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNE 194
E++S+KE+ E+L++Q+ E H+ +Q E + + ELD ++IK E+ L + E
Sbjct: 488 EIKSLKEEIEKLRKQVAEVN-HLEQQLEEANSVRRELDDAFRQIKAFEKQIKTLQQERE 545
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,587,083
Number of Sequences: 539616
Number of extensions: 2914150
Number of successful extensions: 11775
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 238
Number of HSP's that attempted gapping in prelim test: 11445
Number of HSP's gapped (non-prelim): 588
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)