Query 037795
Match_columns 227
No_of_seqs 49 out of 51
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:28:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05266 DUF724: Protein of un 100.0 9.9E-69 2.1E-73 460.0 20.0 185 40-224 1-188 (190)
2 PF05278 PEARLI-4: Arabidopsis 97.6 0.0034 7.3E-08 57.6 15.8 123 87-213 127-253 (269)
3 PF08581 Tup_N: Tup N-terminal 95.2 0.26 5.7E-06 37.6 9.3 67 133-206 1-75 (79)
4 PRK11637 AmiB activator; Provi 95.0 0.29 6.2E-06 46.5 11.0 28 194-221 102-129 (428)
5 PF11559 ADIP: Afadin- and alp 93.1 2.8 6.1E-05 34.2 11.9 69 121-189 27-99 (151)
6 PF04111 APG6: Autophagy prote 92.8 1.2 2.6E-05 41.3 10.5 108 100-221 15-125 (314)
7 COG1579 Zn-ribbon protein, pos 92.1 2.6 5.7E-05 38.3 11.4 50 137-186 33-82 (239)
8 PF13851 GAS: Growth-arrest sp 91.9 4.6 0.0001 35.2 12.4 101 126-226 70-174 (201)
9 PF15294 Leu_zip: Leucine zipp 91.5 9.1 0.0002 35.6 14.4 128 93-220 70-233 (278)
10 TIGR03185 DNA_S_dndD DNA sulfu 91.4 5.1 0.00011 40.3 13.7 126 95-224 155-291 (650)
11 PHA02562 46 endonuclease subun 91.4 3.5 7.6E-05 39.7 12.1 16 142-157 306-321 (562)
12 PRK11637 AmiB activator; Provi 91.3 7.8 0.00017 36.9 14.2 28 158-185 91-118 (428)
13 PF00038 Filament: Intermediat 90.7 7.2 0.00016 35.0 12.8 79 144-222 211-289 (312)
14 COG2433 Uncharacterized conser 89.8 7.6 0.00017 39.8 13.2 144 73-219 337-505 (652)
15 PF04912 Dynamitin: Dynamitin 89.5 4.8 0.0001 38.0 11.1 80 106-185 293-372 (388)
16 PF06810 Phage_GP20: Phage min 89.4 5.6 0.00012 33.5 10.3 87 120-214 8-94 (155)
17 PF08317 Spc7: Spc7 kinetochor 89.0 9.5 0.00021 35.3 12.5 18 140-157 182-199 (325)
18 PF10186 Atg14: UV radiation r 88.7 15 0.00033 32.1 13.0 64 125-188 34-102 (302)
19 PF12718 Tropomyosin_1: Tropom 87.8 7.6 0.00017 32.3 10.0 50 139-188 4-53 (143)
20 PF00038 Filament: Intermediat 87.5 16 0.00036 32.7 12.7 107 108-217 11-125 (312)
21 PF08317 Spc7: Spc7 kinetochor 87.2 15 0.00032 34.0 12.5 63 147-209 221-290 (325)
22 PF05529 Bap31: B-cell recepto 87.1 17 0.00038 30.8 13.1 122 82-209 53-189 (192)
23 PRK04778 septation ring format 86.0 30 0.00064 34.5 14.7 49 88-136 207-260 (569)
24 PF05667 DUF812: Protein of un 85.4 13 0.00028 37.8 11.9 90 135-224 328-423 (594)
25 PF09726 Macoilin: Transmembra 85.3 10 0.00022 39.3 11.3 80 140-219 458-576 (697)
26 PF13851 GAS: Growth-arrest sp 85.3 18 0.0004 31.5 11.5 107 112-220 6-125 (201)
27 TIGR00606 rad50 rad50. This fa 84.9 12 0.00026 40.8 12.1 32 152-183 884-915 (1311)
28 smart00787 Spc7 Spc7 kinetocho 84.8 8.3 0.00018 36.0 9.6 18 140-157 177-194 (312)
29 PF15619 Lebercilin: Ciliary p 84.6 24 0.00053 30.8 11.9 72 121-192 64-154 (194)
30 PHA02562 46 endonuclease subun 84.5 9.6 0.00021 36.7 10.2 14 67-80 139-152 (562)
31 COG1561 Uncharacterized stress 83.9 30 0.00064 32.5 12.7 19 197-215 272-290 (290)
32 smart00787 Spc7 Spc7 kinetocho 83.8 27 0.00058 32.7 12.5 53 158-210 227-286 (312)
33 TIGR00255 conserved hypothetic 83.8 24 0.00052 32.7 12.1 39 85-123 131-169 (291)
34 PF00769 ERM: Ezrin/radixin/mo 82.6 10 0.00023 34.0 9.0 58 163-224 75-132 (246)
35 PF10146 zf-C4H2: Zinc finger- 81.5 19 0.00042 32.4 10.3 65 146-210 36-103 (230)
36 PRK09039 hypothetical protein; 81.1 49 0.0011 31.1 14.5 20 94-113 39-58 (343)
37 PF05266 DUF724: Protein of un 80.9 25 0.00055 30.6 10.6 50 169-218 123-175 (190)
38 KOG0963 Transcription factor/C 80.9 33 0.00071 35.4 12.6 111 107-217 127-257 (629)
39 PRK10869 recombination and rep 80.2 47 0.001 33.2 13.4 67 120-186 288-357 (553)
40 PF10212 TTKRSYEDQ: Predicted 79.8 34 0.00073 34.6 12.2 73 149-221 441-513 (518)
41 PF08614 ATG16: Autophagy prot 79.7 5.6 0.00012 34.1 6.1 26 80-105 15-40 (194)
42 smart00338 BRLZ basic region l 79.0 19 0.00042 25.4 7.8 56 130-185 7-62 (65)
43 PRK10361 DNA recombination pro 78.7 73 0.0016 31.8 14.1 12 211-222 108-119 (475)
44 COG3750 Uncharacterized protei 78.6 6.5 0.00014 30.6 5.4 51 80-134 8-58 (85)
45 cd04776 HTH_GnyR Helix-Turn-He 78.3 16 0.00035 29.0 7.9 23 114-136 45-67 (118)
46 PF02403 Seryl_tRNA_N: Seryl-t 78.1 26 0.00056 26.9 8.8 33 194-226 73-105 (108)
47 PF05911 DUF869: Plant protein 77.8 21 0.00046 37.5 10.6 74 143-220 86-159 (769)
48 PRK11820 hypothetical protein; 76.4 62 0.0013 30.0 12.2 41 83-123 127-167 (288)
49 TIGR02680 conserved hypothetic 76.2 40 0.00087 37.3 12.6 42 106-147 218-259 (1353)
50 PF07798 DUF1640: Protein of u 75.8 48 0.001 28.0 14.3 14 116-129 7-20 (177)
51 TIGR02168 SMC_prok_B chromosom 75.7 68 0.0015 33.1 13.5 6 60-65 138-143 (1179)
52 COG3883 Uncharacterized protei 75.3 29 0.00063 32.2 9.7 38 147-184 64-101 (265)
53 KOG0837 Transcriptional activa 75.3 13 0.00028 34.6 7.3 60 128-187 206-265 (279)
54 KOG0971 Microtubule-associated 75.1 18 0.00039 39.1 9.2 101 86-188 301-442 (1243)
55 PF08614 ATG16: Autophagy prot 75.1 14 0.00029 31.7 7.1 22 196-217 152-173 (194)
56 PRK10884 SH3 domain-containing 74.9 35 0.00076 30.1 9.8 22 194-215 145-166 (206)
57 KOG3863 bZIP transcription fac 74.7 6.4 0.00014 40.2 5.7 97 84-192 452-554 (604)
58 PF00261 Tropomyosin: Tropomyo 74.6 60 0.0013 28.6 11.9 81 141-221 140-223 (237)
59 KOG0804 Cytoplasmic Zn-finger 74.1 51 0.0011 33.0 11.5 61 147-207 387-447 (493)
60 KOG4674 Uncharacterized conser 73.6 75 0.0016 36.7 13.9 77 116-192 1248-1343(1822)
61 TIGR00606 rad50 rad50. This fa 73.5 37 0.0008 37.2 11.4 47 143-189 882-928 (1311)
62 PRK01156 chromosome segregatio 73.5 60 0.0013 33.6 12.5 21 127-147 560-580 (895)
63 PF10174 Cast: RIM-binding pro 73.3 48 0.001 35.0 11.7 74 147-220 463-539 (775)
64 cd04779 HTH_MerR-like_sg4 Heli 73.0 20 0.00044 29.4 7.3 64 114-184 46-109 (134)
65 PF05701 WEMBL: Weak chloropla 72.8 44 0.00096 33.1 11.0 78 110-189 4-81 (522)
66 PF05816 TelA: Toxic anion res 72.8 82 0.0018 29.3 13.2 71 87-157 27-99 (333)
67 PF04156 IncA: IncA protein; 72.6 33 0.00072 28.6 8.8 34 137-170 83-116 (191)
68 PRK09039 hypothetical protein; 71.6 57 0.0012 30.7 11.0 25 194-218 171-199 (343)
69 KOG0250 DNA repair protein RAD 71.3 95 0.0021 34.1 13.5 25 194-218 364-388 (1074)
70 COG4942 Membrane-bound metallo 71.1 47 0.001 32.7 10.5 51 139-189 56-106 (420)
71 COG1196 Smc Chromosome segrega 71.0 1.2E+02 0.0025 33.0 14.4 25 194-218 890-914 (1163)
72 PF09738 DUF2051: Double stran 70.8 49 0.0011 31.0 10.2 74 141-214 83-159 (302)
73 PF14257 DUF4349: Domain of un 70.7 16 0.00034 32.4 6.7 83 100-187 97-193 (262)
74 KOG0977 Nuclear envelope prote 70.7 33 0.00071 34.8 9.5 76 140-215 111-189 (546)
75 PF10267 Tmemb_cc2: Predicted 70.0 70 0.0015 31.2 11.3 21 160-180 273-293 (395)
76 PF06160 EzrA: Septation ring 69.3 81 0.0018 31.5 12.0 71 150-220 109-179 (560)
77 PF13870 DUF4201: Domain of un 69.3 67 0.0014 26.9 10.8 64 124-187 73-136 (177)
78 TIGR01069 mutS2 MutS2 family p 69.2 1E+02 0.0022 32.4 13.0 15 115-129 484-498 (771)
79 PF10211 Ax_dynein_light: Axon 69.2 48 0.001 28.7 9.2 16 88-103 65-80 (189)
80 KOG1760 Molecular chaperone Pr 69.1 45 0.00097 28.0 8.5 85 131-216 19-116 (131)
81 TIGR02680 conserved hypothetic 69.0 1.5E+02 0.0032 33.1 14.8 66 124-189 258-323 (1353)
82 PF12128 DUF3584: Protein of u 68.4 73 0.0016 34.7 12.2 92 118-209 761-862 (1201)
83 KOG2346 Uncharacterized conser 67.9 7.8 0.00017 39.3 4.5 108 65-186 29-136 (636)
84 KOG1962 B-cell receptor-associ 67.8 56 0.0012 29.5 9.5 85 127-220 113-197 (216)
85 PRK01156 chromosome segregatio 67.5 1.6E+02 0.0034 30.7 14.0 18 121-138 597-614 (895)
86 PF05837 CENP-H: Centromere pr 67.4 59 0.0013 25.6 10.2 74 153-226 14-89 (106)
87 KOG0250 DNA repair protein RAD 67.0 72 0.0016 35.0 11.6 69 155-223 280-351 (1074)
88 KOG0996 Structural maintenance 66.7 43 0.00093 37.1 9.9 28 52-79 232-259 (1293)
89 PF05701 WEMBL: Weak chloropla 66.4 78 0.0017 31.4 11.2 85 134-218 136-234 (522)
90 TIGR00634 recN DNA repair prot 66.2 1.4E+02 0.0029 29.7 12.8 24 122-145 295-321 (563)
91 PF12325 TMF_TATA_bd: TATA ele 66.0 72 0.0016 26.0 10.9 75 135-209 30-110 (120)
92 PF09325 Vps5: Vps5 C terminal 65.8 63 0.0014 27.5 9.2 54 88-141 84-138 (236)
93 cd07663 BAR_SNX5 The Bin/Amphi 65.2 1.1E+02 0.0023 27.6 14.5 134 86-222 1-170 (218)
94 PF10498 IFT57: Intra-flagella 64.6 68 0.0015 30.7 10.0 72 139-217 277-350 (359)
95 COG1579 Zn-ribbon protein, pos 64.5 1.1E+02 0.0025 27.8 13.0 76 88-165 51-126 (239)
96 PRK02224 chromosome segregatio 64.3 1.4E+02 0.003 30.8 12.8 22 59-81 128-152 (880)
97 PF10046 BLOC1_2: Biogenesis o 64.2 66 0.0014 24.9 9.9 28 194-221 72-99 (99)
98 PF11932 DUF3450: Protein of u 64.1 90 0.002 27.6 10.1 50 140-189 47-96 (251)
99 PF09304 Cortex-I_coil: Cortex 63.9 79 0.0017 25.7 11.8 52 137-188 25-76 (107)
100 PRK10884 SH3 domain-containing 63.8 53 0.0011 29.0 8.5 44 143-186 119-162 (206)
101 PF06160 EzrA: Septation ring 63.5 1.3E+02 0.0029 30.1 12.2 49 88-136 203-256 (560)
102 KOG3564 GTPase-activating prot 63.3 83 0.0018 32.0 10.5 100 82-184 3-105 (604)
103 PF06785 UPF0242: Uncharacteri 63.2 1.1E+02 0.0024 29.8 10.9 115 94-213 73-219 (401)
104 PF13870 DUF4201: Domain of un 63.0 90 0.002 26.1 10.3 65 126-190 50-118 (177)
105 TIGR03185 DNA_S_dndD DNA sulfu 62.8 97 0.0021 31.3 11.2 9 68-76 146-154 (650)
106 PF07888 CALCOCO1: Calcium bin 62.7 1.9E+02 0.004 29.6 13.4 75 107-184 149-227 (546)
107 PF10473 CENP-F_leu_zip: Leuci 62.5 93 0.002 26.1 10.3 36 149-184 52-87 (140)
108 PF12718 Tropomyosin_1: Tropom 62.5 89 0.0019 25.9 11.1 9 177-185 80-88 (143)
109 PF00261 Tropomyosin: Tropomyo 62.4 1.1E+02 0.0024 26.9 12.8 32 157-188 121-152 (237)
110 PF04156 IncA: IncA protein; 61.9 94 0.002 25.9 14.5 15 197-211 167-181 (191)
111 PF10146 zf-C4H2: Zinc finger- 61.8 1.2E+02 0.0027 27.3 12.7 91 127-217 3-103 (230)
112 PF15619 Lebercilin: Ciliary p 61.7 1.1E+02 0.0024 26.7 10.7 73 137-209 70-153 (194)
113 PF07200 Mod_r: Modifier of ru 61.3 86 0.0019 25.3 11.6 26 194-219 95-120 (150)
114 PF07106 TBPIP: Tat binding pr 61.3 36 0.00078 28.3 6.7 29 139-167 76-104 (169)
115 PF10392 COG5: Golgi transport 61.1 86 0.0019 25.3 10.5 48 165-212 67-117 (132)
116 cd04769 HTH_MerR2 Helix-Turn-H 61.1 33 0.00072 26.9 6.2 24 113-136 45-68 (116)
117 PF13863 DUF4200: Domain of un 60.6 78 0.0017 24.6 10.8 27 193-219 79-105 (126)
118 KOG0995 Centromere-associated 60.6 1.1E+02 0.0025 31.3 11.1 48 140-187 271-318 (581)
119 KOG0976 Rho/Rac1-interacting s 60.3 1.6E+02 0.0034 32.1 12.3 78 110-187 346-441 (1265)
120 PF07106 TBPIP: Tat binding pr 60.1 1E+02 0.0022 25.6 10.4 55 137-191 81-137 (169)
121 COG4026 Uncharacterized protei 59.9 84 0.0018 29.1 9.2 53 139-191 132-184 (290)
122 PF14662 CCDC155: Coiled-coil 59.8 1.3E+02 0.0028 26.8 10.7 47 139-185 12-58 (193)
123 PF07888 CALCOCO1: Calcium bin 59.7 1.9E+02 0.0042 29.5 12.5 66 114-179 321-387 (546)
124 PF03962 Mnd1: Mnd1 family; I 59.4 1.2E+02 0.0026 26.3 11.0 93 125-217 59-164 (188)
125 PF00170 bZIP_1: bZIP transcri 59.4 60 0.0013 22.9 7.9 54 132-185 9-62 (64)
126 KOG0161 Myosin class II heavy 59.2 56 0.0012 37.9 9.5 62 153-214 1080-1144(1930)
127 cd01107 HTH_BmrR Helix-Turn-He 59.2 34 0.00074 26.5 5.9 24 113-136 47-70 (108)
128 PF07798 DUF1640: Protein of u 59.2 1.1E+02 0.0024 25.8 10.8 36 165-207 115-150 (177)
129 PF04201 TPD52: Tumour protein 59.1 32 0.00069 29.8 6.1 38 152-189 32-69 (162)
130 KOG4809 Rab6 GTPase-interactin 59.1 66 0.0014 33.1 9.1 64 157-220 332-405 (654)
131 PF15254 CCDC14: Coiled-coil d 59.0 1.1E+02 0.0023 32.8 10.8 52 158-216 464-515 (861)
132 PF08657 DASH_Spc34: DASH comp 58.4 67 0.0015 29.4 8.5 32 137-168 182-213 (259)
133 COG3883 Uncharacterized protei 58.3 67 0.0014 29.8 8.4 58 136-193 39-96 (265)
134 PF12777 MT: Microtubule-bindi 58.1 1.5E+02 0.0033 27.6 11.0 31 63-97 178-208 (344)
135 PF15290 Syntaphilin: Golgi-lo 57.9 1.4E+02 0.003 28.3 10.5 35 165-199 110-149 (305)
136 PF12325 TMF_TATA_bd: TATA ele 57.8 1E+02 0.0022 25.1 9.4 26 201-226 67-92 (120)
137 KOG0964 Structural maintenance 57.5 1.5E+02 0.0033 32.7 11.8 79 142-220 418-499 (1200)
138 PRK00409 recombination and DNA 57.4 88 0.0019 32.7 10.1 13 115-127 489-501 (782)
139 PRK13729 conjugal transfer pil 57.2 33 0.00071 34.3 6.6 33 152-184 79-111 (475)
140 COG4942 Membrane-bound metallo 56.8 1.1E+02 0.0024 30.3 10.0 45 140-184 173-217 (420)
141 PF07889 DUF1664: Protein of u 56.5 1E+02 0.0022 25.5 8.4 56 160-215 58-116 (126)
142 KOG0933 Structural maintenance 56.4 1.7E+02 0.0036 32.4 11.9 24 55-82 629-652 (1174)
143 KOG0964 Structural maintenance 56.3 90 0.002 34.3 10.0 78 137-214 420-500 (1200)
144 PF04012 PspA_IM30: PspA/IM30 56.2 77 0.0017 27.2 8.1 41 149-189 98-138 (221)
145 PF13805 Pil1: Eisosome compon 56.2 1.4E+02 0.0031 27.7 10.3 60 128-188 131-190 (271)
146 PF10805 DUF2730: Protein of u 56.2 80 0.0017 24.8 7.6 19 196-214 73-91 (106)
147 PF07352 Phage_Mu_Gam: Bacteri 56.1 37 0.0008 27.9 5.9 42 157-201 11-52 (149)
148 KOG0612 Rho-associated, coiled 55.7 2.3E+02 0.0049 31.9 12.9 39 147-185 492-530 (1317)
149 PF05010 TACC: Transforming ac 55.7 1.5E+02 0.0033 26.4 10.5 72 150-221 24-95 (207)
150 PF02403 Seryl_tRNA_N: Seryl-t 55.6 46 0.00099 25.5 6.0 13 135-147 29-41 (108)
151 PF12128 DUF3584: Protein of u 55.2 1.9E+02 0.0041 31.7 12.4 23 166-188 681-703 (1201)
152 PF03131 bZIP_Maf: bZIP Maf tr 54.9 3.6 7.8E-05 31.5 -0.3 59 127-185 29-87 (92)
153 PF15070 GOLGA2L5: Putative go 54.9 2.1E+02 0.0046 29.4 12.1 45 147-191 20-64 (617)
154 KOG0995 Centromere-associated 54.8 2.6E+02 0.0056 28.8 16.8 40 140-179 285-324 (581)
155 PF11559 ADIP: Afadin- and alp 54.8 1.2E+02 0.0025 24.7 14.1 49 140-188 71-119 (151)
156 PF11932 DUF3450: Protein of u 54.5 1.5E+02 0.0033 26.1 11.1 50 141-190 41-90 (251)
157 PF06008 Laminin_I: Laminin Do 54.2 1.6E+02 0.0034 26.2 10.6 93 123-219 7-104 (264)
158 PF10168 Nup88: Nuclear pore c 54.1 78 0.0017 33.0 9.0 23 130-152 563-585 (717)
159 cd07595 BAR_RhoGAP_Rich-like T 53.5 1.7E+02 0.0037 26.4 10.7 27 143-169 119-145 (244)
160 PF07851 TMPIT: TMPIT-like pro 53.2 1.6E+02 0.0035 28.2 10.3 79 137-215 6-88 (330)
161 KOG0933 Structural maintenance 53.1 3.6E+02 0.0078 30.0 14.0 31 98-128 728-758 (1174)
162 PF15066 CAGE1: Cancer-associa 53.1 2.6E+02 0.0057 28.4 12.5 51 86-136 335-390 (527)
163 KOG4403 Cell surface glycoprot 53.0 1.1E+02 0.0025 30.7 9.5 52 165-220 275-327 (575)
164 PF08946 Osmo_CC: Osmosensory 52.9 24 0.00052 24.7 3.5 26 165-190 14-39 (46)
165 KOG4673 Transcription factor T 52.8 1.9E+02 0.004 31.0 11.3 67 119-189 489-556 (961)
166 PRK05431 seryl-tRNA synthetase 52.7 1E+02 0.0022 29.8 9.2 28 198-225 76-103 (425)
167 PRK02119 hypothetical protein; 52.4 60 0.0013 24.2 6.0 21 194-214 36-56 (73)
168 KOG1962 B-cell receptor-associ 52.3 1.8E+02 0.0039 26.3 10.0 19 194-212 192-210 (216)
169 PF15397 DUF4618: Domain of un 52.2 1.3E+02 0.0028 27.9 9.2 69 147-215 65-140 (258)
170 PRK04863 mukB cell division pr 51.9 2.3E+02 0.0049 32.3 12.6 18 113-130 295-312 (1486)
171 PRK04406 hypothetical protein; 51.8 61 0.0013 24.3 5.9 18 195-212 39-56 (75)
172 PF08230 Cpl-7: Cpl-7 lysozyme 51.5 14 0.0003 25.4 2.2 22 118-139 21-42 (42)
173 PF09726 Macoilin: Transmembra 51.4 75 0.0016 33.1 8.4 12 93-104 422-433 (697)
174 PF09730 BicD: Microtubule-ass 51.0 1.7E+02 0.0037 30.8 10.9 53 140-192 67-119 (717)
175 TIGR00414 serS seryl-tRNA synt 51.0 1.1E+02 0.0023 29.6 8.9 37 118-157 16-52 (418)
176 cd01109 HTH_YyaN Helix-Turn-He 50.7 1.1E+02 0.0023 23.7 7.5 22 114-135 47-68 (113)
177 KOG4603 TBP-1 interacting prot 50.5 81 0.0018 28.0 7.3 25 153-177 90-114 (201)
178 cd07636 BAR_GRAF The Bin/Amphi 50.5 1.3E+02 0.0029 26.8 8.8 79 87-167 38-129 (207)
179 cd04770 HTH_HMRTR Helix-Turn-H 50.4 1.2E+02 0.0025 23.7 7.7 21 115-135 48-68 (123)
180 PF10779 XhlA: Haemolysin XhlA 50.4 70 0.0015 23.3 6.0 44 149-192 6-49 (71)
181 KOG4010 Coiled-coil protein TP 50.3 63 0.0014 28.9 6.6 32 162-193 57-88 (208)
182 PF00769 ERM: Ezrin/radixin/mo 50.2 1.9E+02 0.0042 26.0 10.2 53 137-189 14-66 (246)
183 PF08647 BRE1: BRE1 E3 ubiquit 50.0 1.2E+02 0.0025 23.4 10.6 20 206-225 73-92 (96)
184 PRK13729 conjugal transfer pil 49.1 77 0.0017 31.7 7.8 48 139-186 73-120 (475)
185 PF13334 DUF4094: Domain of un 48.9 22 0.00048 27.9 3.3 28 164-191 67-94 (95)
186 PF05278 PEARLI-4: Arabidopsis 48.8 2.3E+02 0.005 26.5 10.6 50 158-207 209-261 (269)
187 cd01282 HTH_MerR-like_sg3 Heli 48.8 82 0.0018 24.6 6.6 22 114-135 46-67 (112)
188 KOG0977 Nuclear envelope prote 48.5 2E+02 0.0044 29.4 10.7 56 137-192 122-177 (546)
189 cd07596 BAR_SNX The Bin/Amphip 48.2 1.5E+02 0.0033 24.3 12.8 41 88-128 66-106 (218)
190 KOG4643 Uncharacterized coiled 48.1 3.4E+02 0.0074 30.1 12.6 64 108-171 394-465 (1195)
191 PF14662 CCDC155: Coiled-coil 48.0 1.5E+02 0.0033 26.4 8.7 28 139-166 106-133 (193)
192 KOG4673 Transcription factor T 47.7 1.6E+02 0.0035 31.4 9.9 112 78-189 363-507 (961)
193 KOG2264 Exostosin EXT1L [Signa 47.6 1.1E+02 0.0024 32.0 8.7 42 169-214 106-147 (907)
194 TIGR01069 mutS2 MutS2 family p 46.7 2E+02 0.0042 30.3 10.6 14 175-188 541-554 (771)
195 PF13815 Dzip-like_N: Iguana/D 46.6 1.3E+02 0.0029 23.8 7.6 43 143-185 74-116 (118)
196 PLN02678 seryl-tRNA synthetase 46.3 2.3E+02 0.005 28.0 10.5 35 120-158 22-56 (448)
197 PLN02320 seryl-tRNA synthetase 46.0 2.8E+02 0.0061 27.9 11.2 36 117-157 80-115 (502)
198 PF07889 DUF1664: Protein of u 45.9 1.4E+02 0.0031 24.7 7.7 72 109-189 51-122 (126)
199 KOG0996 Structural maintenance 45.4 3.5E+02 0.0077 30.4 12.4 57 103-159 300-358 (1293)
200 PRK12704 phosphodiesterase; Pr 45.4 2.5E+02 0.0054 28.1 10.8 6 84-89 15-20 (520)
201 KOG0993 Rab5 GTPase effector R 45.4 1.9E+02 0.0041 29.1 9.6 36 180-215 147-182 (542)
202 KOG3850 Predicted membrane pro 45.4 3.2E+02 0.007 27.2 11.5 27 52-78 202-234 (455)
203 PF04102 SlyX: SlyX; InterPro 45.1 96 0.0021 22.6 6.0 35 152-186 7-41 (69)
204 cd07619 BAR_Rich2 The Bin/Amph 44.9 2.5E+02 0.0054 25.7 10.6 82 143-224 119-219 (248)
205 PF05791 Bacillus_HBL: Bacillu 44.7 1.7E+02 0.0037 25.0 8.4 19 194-212 162-180 (184)
206 PRK04778 septation ring format 44.7 3.4E+02 0.0073 27.2 14.1 29 91-119 239-267 (569)
207 cd07621 BAR_SNX5_6 The Bin/Amp 44.5 2.4E+02 0.0051 25.3 14.6 52 86-140 1-53 (219)
208 PF05615 THOC7: Tho complex su 44.3 1.7E+02 0.0036 23.6 12.3 15 109-123 17-31 (139)
209 TIGR03007 pepcterm_ChnLen poly 44.0 2.8E+02 0.0061 26.6 10.6 54 168-221 322-381 (498)
210 PF14988 DUF4515: Domain of un 43.8 2.3E+02 0.0049 25.0 11.6 85 134-218 17-112 (206)
211 PF10473 CENP-F_leu_zip: Leuci 43.7 2E+02 0.0043 24.2 10.8 65 153-217 42-116 (140)
212 KOG4005 Transcription factor X 43.4 2.6E+02 0.0057 26.1 9.7 48 124-171 65-112 (292)
213 PF00435 Spectrin: Spectrin re 43.3 1.1E+02 0.0025 21.3 8.0 53 108-161 15-67 (105)
214 COG1842 PspA Phage shock prote 43.2 2.3E+02 0.005 25.4 9.3 31 158-188 108-138 (225)
215 KOG0979 Structural maintenance 43.1 2.6E+02 0.0056 30.8 10.9 25 194-218 324-348 (1072)
216 PF06818 Fez1: Fez1; InterPro 43.0 1.9E+02 0.0041 25.9 8.6 32 158-189 75-106 (202)
217 PF15070 GOLGA2L5: Putative go 42.9 2.5E+02 0.0054 28.9 10.5 47 166-212 191-240 (617)
218 KOG0976 Rho/Rac1-interacting s 42.8 2.4E+02 0.0052 30.8 10.4 101 78-185 30-135 (1265)
219 PRK13694 hypothetical protein; 42.5 34 0.00073 26.7 3.3 50 81-134 7-56 (83)
220 PF05103 DivIVA: DivIVA protei 42.3 14 0.0003 28.9 1.2 59 123-184 16-74 (131)
221 PF04582 Reo_sigmaC: Reovirus 42.2 18 0.00039 34.5 2.1 23 195-217 126-148 (326)
222 KOG0243 Kinesin-like protein [ 42.2 5E+02 0.011 28.7 12.9 67 112-181 445-515 (1041)
223 COG1340 Uncharacterized archae 42.0 3.1E+02 0.0066 26.0 11.7 50 140-189 170-219 (294)
224 PF05600 DUF773: Protein of un 41.9 1.6E+02 0.0036 29.4 8.9 67 120-190 402-473 (507)
225 KOG4809 Rab6 GTPase-interactin 41.4 4.3E+02 0.0093 27.5 13.0 26 194-219 420-445 (654)
226 TIGR01843 type_I_hlyD type I s 41.4 2.6E+02 0.0055 25.6 9.5 19 197-215 248-266 (423)
227 PF05816 TelA: Toxic anion res 41.3 3E+02 0.0065 25.6 12.9 127 90-216 50-190 (333)
228 KOG4593 Mitotic checkpoint pro 41.2 2.4E+02 0.0053 29.7 10.1 58 131-188 100-162 (716)
229 PF07139 DUF1387: Protein of u 40.9 2E+02 0.0044 27.2 8.8 67 126-192 183-251 (302)
230 PRK00846 hypothetical protein; 40.8 1.5E+02 0.0033 22.6 6.6 19 196-214 42-60 (77)
231 COG4026 Uncharacterized protei 40.7 3.1E+02 0.0066 25.6 10.9 35 150-184 136-170 (290)
232 PF14712 Snapin_Pallidin: Snap 40.7 1.5E+02 0.0032 22.0 7.4 21 80-100 1-21 (92)
233 PRK00736 hypothetical protein; 40.6 1.2E+02 0.0025 22.3 5.9 18 195-212 33-50 (68)
234 PF06632 XRCC4: DNA double-str 40.5 3.4E+02 0.0073 26.0 10.4 28 165-192 182-209 (342)
235 PRK00295 hypothetical protein; 40.5 1.3E+02 0.0028 22.0 6.1 21 194-214 32-52 (68)
236 cd04775 HTH_Cfa-like Helix-Tur 40.5 1.2E+02 0.0026 23.3 6.2 21 114-134 47-67 (102)
237 PF10458 Val_tRNA-synt_C: Valy 40.2 89 0.0019 22.3 5.1 20 194-213 45-64 (66)
238 COG5185 HEC1 Protein involved 40.1 4.3E+02 0.0094 27.1 14.7 50 139-188 306-355 (622)
239 PF10224 DUF2205: Predicted co 40.0 1.2E+02 0.0026 23.3 6.0 44 172-215 18-64 (80)
240 PF03428 RP-C: Replication pro 39.9 62 0.0014 28.0 5.0 38 121-158 123-160 (177)
241 KOG0161 Myosin class II heavy 39.8 4.4E+02 0.0095 31.1 12.6 46 139-184 1052-1097(1930)
242 KOG1772 Vacuolar H+-ATPase V1 39.4 2.1E+02 0.0046 23.4 8.2 58 161-218 44-102 (108)
243 PF04859 DUF641: Plant protein 39.3 1.6E+02 0.0034 24.6 7.1 32 157-188 88-119 (131)
244 PF10805 DUF2730: Protein of u 39.2 1.8E+02 0.0039 22.9 7.1 21 167-187 76-96 (106)
245 PRK06342 transcription elongat 39.2 75 0.0016 27.0 5.3 51 139-189 31-83 (160)
246 PF10073 DUF2312: Uncharacteri 39.2 42 0.00092 25.6 3.4 25 110-134 24-48 (74)
247 PF04102 SlyX: SlyX; InterPro 39.1 1.1E+02 0.0023 22.3 5.4 21 194-214 31-51 (69)
248 KOG0709 CREB/ATF family transc 38.8 73 0.0016 31.9 5.8 62 127-188 250-311 (472)
249 PF08542 Rep_fac_C: Replicatio 38.5 1.5E+02 0.0033 21.4 7.9 63 109-171 19-85 (89)
250 PF13166 AAA_13: AAA domain 38.5 3.6E+02 0.0079 27.0 10.8 6 50-55 270-275 (712)
251 PF15272 BBP1_C: Spindle pole 38.5 2.4E+02 0.0053 25.1 8.5 65 157-221 83-151 (196)
252 COG5162 Transcription initiati 38.2 59 0.0013 28.7 4.5 59 62-142 60-118 (197)
253 PRK00736 hypothetical protein; 38.1 1.4E+02 0.0029 21.9 5.9 40 151-190 7-46 (68)
254 KOG1029 Endocytic adaptor prot 37.8 3.4E+02 0.0075 29.5 10.6 86 127-212 488-587 (1118)
255 cd07672 F-BAR_PSTPIP2 The F-BA 37.7 3E+02 0.0065 24.6 11.7 32 194-225 153-184 (240)
256 COG5185 HEC1 Protein involved 37.7 4.4E+02 0.0094 27.1 10.9 40 140-179 321-360 (622)
257 PF12329 TMF_DNA_bd: TATA elem 37.7 1.7E+02 0.0037 21.7 7.7 39 146-184 16-54 (74)
258 PF05852 DUF848: Gammaherpesvi 37.6 2.6E+02 0.0056 23.8 9.8 63 162-224 53-115 (146)
259 PF06785 UPF0242: Uncharacteri 37.6 4E+02 0.0088 26.1 10.6 26 195-220 141-166 (401)
260 PF05667 DUF812: Protein of un 37.5 3.1E+02 0.0067 28.1 10.2 29 160-188 451-479 (594)
261 cd01106 HTH_TipAL-Mta Helix-Tu 37.4 1.2E+02 0.0027 23.0 5.8 21 115-135 48-68 (103)
262 PF09177 Syntaxin-6_N: Syntaxi 37.3 1.8E+02 0.004 22.0 8.0 48 168-215 44-97 (97)
263 PF14193 DUF4315: Domain of un 37.1 72 0.0016 24.6 4.4 22 167-188 5-26 (83)
264 KOG0804 Cytoplasmic Zn-finger 37.1 2.1E+02 0.0046 28.8 8.6 36 60-95 288-326 (493)
265 TIGR03545 conserved hypothetic 37.0 2.5E+02 0.0054 28.5 9.3 28 174-201 241-268 (555)
266 TIGR02894 DNA_bind_RsfA transc 37.0 1.6E+02 0.0034 25.6 6.9 27 145-171 107-133 (161)
267 KOG0963 Transcription factor/C 36.9 5.1E+02 0.011 27.1 11.8 55 167-221 246-318 (629)
268 PF03961 DUF342: Protein of un 36.8 2.1E+02 0.0046 27.5 8.6 13 124-136 326-338 (451)
269 PF05483 SCP-1: Synaptonemal c 36.8 3.2E+02 0.0069 29.1 10.1 119 96-220 513-654 (786)
270 TIGR00293 prefoldin, archaeal 36.7 2E+02 0.0044 22.4 7.1 35 122-156 10-44 (126)
271 PRK00106 hypothetical protein; 36.7 4.1E+02 0.0089 27.0 10.8 8 85-92 13-20 (535)
272 TIGR02977 phageshock_pspA phag 36.7 2.5E+02 0.0055 24.4 8.4 35 158-192 101-135 (219)
273 PF15294 Leu_zip: Leucine zipp 36.6 3.5E+02 0.0076 25.3 9.6 53 137-189 148-209 (278)
274 PF07058 Myosin_HC-like: Myosi 36.6 2.1E+02 0.0045 27.6 8.2 68 140-207 12-92 (351)
275 PF10211 Ax_dynein_light: Axon 36.6 2.8E+02 0.0061 23.9 11.5 10 194-203 169-178 (189)
276 PF15030 DUF4527: Protein of u 36.5 2.8E+02 0.0061 25.9 8.8 22 122-143 13-35 (277)
277 cd07618 BAR_Rich1 The Bin/Amph 36.3 3.4E+02 0.0073 24.8 11.3 25 145-169 121-145 (246)
278 cd04766 HTH_HspR Helix-Turn-He 36.2 1.3E+02 0.0028 22.4 5.7 40 114-157 47-87 (91)
279 PTZ00464 SNF-7-like protein; P 36.1 2.7E+02 0.0059 24.7 8.5 10 149-158 25-34 (211)
280 PF04420 CHD5: CHD5-like prote 36.1 92 0.002 26.2 5.3 12 175-186 71-82 (161)
281 KOG4552 Vitamin-D-receptor int 36.0 3.5E+02 0.0076 24.9 9.2 39 137-175 62-100 (272)
282 PRK02793 phi X174 lysis protei 35.8 1.6E+02 0.0034 21.8 6.0 18 196-213 37-54 (72)
283 PF10498 IFT57: Intra-flagella 35.6 1.3E+02 0.0028 28.8 6.8 9 57-65 198-206 (359)
284 cd04781 HTH_MerR-like_sg6 Heli 35.4 1.4E+02 0.003 23.4 6.0 22 114-135 46-67 (120)
285 PF10174 Cast: RIM-binding pro 35.4 3.1E+02 0.0066 29.2 10.0 18 168-185 383-400 (775)
286 PF14073 Cep57_CLD: Centrosome 35.0 2.7E+02 0.0058 24.5 8.1 24 162-185 126-149 (178)
287 PF09731 Mitofilin: Mitochondr 35.0 4.6E+02 0.0099 25.9 13.8 37 85-121 226-264 (582)
288 KOG0978 E3 ubiquitin ligase in 34.9 4.6E+02 0.01 27.7 11.0 21 119-139 455-475 (698)
289 cd04789 HTH_Cfa Helix-Turn-Hel 34.6 1.7E+02 0.0036 22.5 6.2 17 116-132 49-65 (102)
290 TIGR01950 SoxR redox-sensitive 34.5 2.1E+02 0.0045 23.6 7.1 23 114-136 47-69 (142)
291 PRK09514 zntR zinc-responsive 34.5 2.1E+02 0.0045 23.3 7.1 21 114-134 48-68 (140)
292 cd04785 HTH_CadR-PbrR-like Hel 34.5 2.3E+02 0.005 22.4 7.2 21 114-134 47-67 (126)
293 PF05008 V-SNARE: Vesicle tran 34.5 1.7E+02 0.0038 20.9 7.1 55 162-219 24-78 (79)
294 PF02388 FemAB: FemAB family; 34.4 1.2E+02 0.0026 29.0 6.4 10 121-130 208-217 (406)
295 PF04012 PspA_IM30: PspA/IM30 34.4 3E+02 0.0064 23.6 12.3 10 104-113 22-31 (221)
296 PF07926 TPR_MLP1_2: TPR/MLP1/ 34.2 2.5E+02 0.0053 22.6 10.5 88 129-216 21-119 (132)
297 COG1842 PspA Phage shock prote 34.1 1.7E+02 0.0038 26.2 7.0 100 89-193 13-136 (225)
298 PF07587 PSD1: Protein of unkn 34.1 34 0.00074 30.8 2.6 43 93-136 34-78 (266)
299 cd07656 F-BAR_srGAP The F-BAR 34.0 3.5E+02 0.0075 24.3 12.9 15 88-102 69-83 (241)
300 PF12329 TMF_DNA_bd: TATA elem 34.0 2E+02 0.0042 21.4 6.8 35 150-184 34-68 (74)
301 PF07926 TPR_MLP1_2: TPR/MLP1/ 33.9 2.5E+02 0.0054 22.6 11.8 21 194-214 72-92 (132)
302 PF05911 DUF869: Plant protein 33.8 6.1E+02 0.013 27.0 14.1 47 143-189 597-643 (769)
303 cd07623 BAR_SNX1_2 The Bin/Amp 33.6 3.3E+02 0.0071 23.8 12.7 55 167-221 120-175 (224)
304 PF07352 Phage_Mu_Gam: Bacteri 33.6 2.5E+02 0.0055 23.0 7.5 45 176-220 9-53 (149)
305 PF10168 Nup88: Nuclear pore c 33.5 5.9E+02 0.013 26.7 13.4 23 194-216 638-660 (717)
306 PRK10227 DNA-binding transcrip 33.5 2.6E+02 0.0056 22.8 7.4 21 115-135 48-68 (135)
307 KOG0288 WD40 repeat protein Ti 33.4 1.3E+02 0.0027 30.1 6.4 21 194-214 54-74 (459)
308 PF04051 TRAPP: Transport prot 33.4 61 0.0013 26.6 3.8 56 88-155 3-62 (152)
309 cd04786 HTH_MerR-like_sg7 Heli 33.3 2.1E+02 0.0045 23.2 6.8 21 114-134 47-67 (131)
310 COG5293 Predicted ATPase [Gene 33.2 5.5E+02 0.012 26.3 10.9 174 53-226 243-444 (591)
311 KOG2391 Vacuolar sorting prote 33.1 4.2E+02 0.0091 25.8 9.7 45 140-184 237-281 (365)
312 PRK13979 DNA topoisomerase IV 33.1 4.8E+02 0.01 28.4 11.1 100 83-188 390-492 (957)
313 PRK04325 hypothetical protein; 33.0 1.8E+02 0.004 21.6 5.9 15 197-211 39-53 (74)
314 PF13747 DUF4164: Domain of un 32.8 2.3E+02 0.005 21.8 7.2 7 150-156 16-22 (89)
315 KOG4657 Uncharacterized conser 32.8 3.5E+02 0.0077 25.0 8.7 19 75-93 5-23 (246)
316 TIGR03752 conj_TIGR03752 integ 32.5 4.4E+02 0.0095 26.6 10.1 99 116-221 43-142 (472)
317 TIGR01000 bacteriocin_acc bact 32.5 4.6E+02 0.0099 25.2 11.6 24 194-217 290-313 (457)
318 PRK02793 phi X174 lysis protei 32.4 1.9E+02 0.0041 21.4 5.9 40 150-189 9-48 (72)
319 PF09738 DUF2051: Double stran 32.3 1.4E+02 0.0029 28.1 6.3 48 141-188 118-165 (302)
320 PHA03152 hypothetical protein; 32.1 61 0.0013 27.5 3.6 39 122-160 78-116 (138)
321 PRK06569 F0F1 ATP synthase sub 32.1 3.2E+02 0.007 23.3 9.8 7 87-93 16-22 (155)
322 PF06148 COG2: COG (conserved 31.8 75 0.0016 25.4 4.0 70 122-191 10-83 (133)
323 KOG0993 Rab5 GTPase effector R 31.7 5.6E+02 0.012 25.9 11.2 121 87-213 368-494 (542)
324 PF09403 FadA: Adhesion protei 31.7 2.9E+02 0.0064 22.8 7.5 27 128-154 55-81 (126)
325 PLN02678 seryl-tRNA synthetase 31.6 1.6E+02 0.0035 29.1 6.9 10 170-179 85-94 (448)
326 TIGR00414 serS seryl-tRNA synt 31.6 1.6E+02 0.0035 28.4 6.8 14 169-182 82-95 (418)
327 PF08461 HTH_12: Ribonuclease 31.6 55 0.0012 23.7 2.8 22 116-137 19-42 (66)
328 PF08580 KAR9: Yeast cortical 31.3 3.9E+02 0.0085 27.9 9.9 75 98-188 80-155 (683)
329 PRK11546 zraP zinc resistance 31.3 3.3E+02 0.0071 23.1 7.9 24 197-220 91-114 (143)
330 PRK00295 hypothetical protein; 31.2 2.1E+02 0.0045 21.0 5.9 37 152-188 8-44 (68)
331 cd04790 HTH_Cfa-like_unk Helix 31.1 1.9E+02 0.0041 24.4 6.5 21 115-135 49-69 (172)
332 KOG0946 ER-Golgi vesicle-tethe 31.1 3.1E+02 0.0066 29.8 9.0 31 158-188 652-682 (970)
333 cd04787 HTH_HMRTR_unk Helix-Tu 31.0 2.8E+02 0.006 22.2 7.6 21 115-135 48-68 (133)
334 KOG2264 Exostosin EXT1L [Signa 30.9 2.1E+02 0.0046 30.0 7.7 19 137-155 95-113 (907)
335 PF05010 TACC: Transforming ac 30.8 3.9E+02 0.0084 23.8 13.0 36 156-191 69-104 (207)
336 cd01110 HTH_SoxR Helix-Turn-He 30.8 2.6E+02 0.0056 22.8 7.0 23 113-135 46-68 (139)
337 PF13805 Pil1: Eisosome compon 30.6 4.5E+02 0.0098 24.5 11.2 45 124-168 95-143 (271)
338 PHA02557 22 prohead core prote 30.4 4.6E+02 0.01 24.6 10.4 22 108-129 115-137 (271)
339 PRK09343 prefoldin subunit bet 30.4 2.9E+02 0.0062 22.2 10.9 77 150-226 15-116 (121)
340 cd07647 F-BAR_PSTPIP The F-BAR 30.3 3.8E+02 0.0082 23.5 14.0 31 194-224 152-182 (239)
341 PF13838 Clathrin_H_link: Clat 30.2 20 0.00043 26.6 0.3 23 46-68 30-54 (66)
342 cd01111 HTH_MerD Helix-Turn-He 30.1 2.2E+02 0.0048 22.2 6.3 21 115-135 48-68 (107)
343 PRK04325 hypothetical protein; 29.9 2.3E+02 0.005 21.0 6.0 39 151-189 11-49 (74)
344 PHA02114 hypothetical protein 29.8 33 0.00072 28.1 1.6 21 114-134 99-119 (127)
345 KOG4571 Activating transcripti 29.7 1.3E+02 0.0027 28.5 5.6 37 149-185 248-284 (294)
346 PRK05431 seryl-tRNA synthetase 29.6 5.3E+02 0.011 25.0 11.2 24 134-157 27-50 (425)
347 PRK00846 hypothetical protein; 29.5 2.3E+02 0.005 21.6 6.0 52 138-191 4-55 (77)
348 KOG0240 Kinesin (SMY1 subfamil 29.4 4.5E+02 0.0098 27.3 9.7 32 194-225 462-493 (607)
349 PRK02119 hypothetical protein; 29.3 2.4E+02 0.0052 20.9 6.3 40 150-189 10-49 (73)
350 cd04783 HTH_MerR1 Helix-Turn-H 29.3 2.7E+02 0.0059 21.9 6.8 21 115-135 48-68 (126)
351 TIGR01843 type_I_hlyD type I s 29.1 4.5E+02 0.0097 24.0 11.6 12 206-217 250-261 (423)
352 PF06757 Ins_allergen_rp: Inse 28.9 1.9E+02 0.004 24.4 6.1 57 76-141 31-87 (179)
353 TIGR02051 MerR Hg(II)-responsi 28.9 2.3E+02 0.005 22.4 6.3 20 115-134 47-66 (124)
354 PF09730 BicD: Microtubule-ass 28.8 3.5E+02 0.0076 28.6 9.0 65 145-209 51-118 (717)
355 KOG1937 Uncharacterized conser 28.7 6.4E+02 0.014 25.7 12.5 106 109-224 239-374 (521)
356 cd04784 HTH_CadR-PbrR Helix-Tu 28.7 2.9E+02 0.0063 21.7 7.6 20 115-134 48-67 (127)
357 TIGR02044 CueR Cu(I)-responsiv 28.5 2.8E+02 0.0062 21.9 6.8 21 114-134 47-67 (127)
358 cd04782 HTH_BltR Helix-Turn-He 28.5 2.1E+02 0.0047 21.6 5.8 22 114-135 47-68 (97)
359 PF09755 DUF2046: Uncharacteri 28.4 5.3E+02 0.011 24.6 10.4 25 124-148 105-129 (310)
360 TIGR02231 conserved hypothetic 28.2 5.6E+02 0.012 25.1 10.0 35 155-189 137-171 (525)
361 KOG0972 Huntingtin interacting 28.0 5.2E+02 0.011 25.0 9.3 23 194-216 334-356 (384)
362 PF10186 Atg14: UV radiation r 27.9 4E+02 0.0088 23.1 14.2 39 137-175 65-103 (302)
363 PF14584 DUF4446: Protein of u 27.9 1.3E+02 0.0027 25.5 4.8 52 137-188 25-78 (151)
364 PF15397 DUF4618: Domain of un 27.8 4.9E+02 0.011 24.1 10.1 31 189-219 75-105 (258)
365 PF05615 THOC7: Tho complex su 27.7 3.2E+02 0.007 21.9 10.6 27 196-223 96-122 (139)
366 PF05529 Bap31: B-cell recepto 27.7 3.7E+02 0.0081 22.6 8.1 24 194-217 160-183 (192)
367 COG0497 RecN ATPase involved i 27.6 2.3E+02 0.0049 29.0 7.3 58 127-184 299-356 (557)
368 KOG0971 Microtubule-associated 27.5 8.2E+02 0.018 27.3 11.5 11 116-126 253-263 (1243)
369 KOG3501 Molecular chaperone Pr 27.4 1.8E+02 0.0038 23.9 5.3 29 160-188 64-92 (114)
370 PF10205 KLRAQ: Predicted coil 27.3 3.3E+02 0.0072 21.9 7.8 41 147-187 31-71 (102)
371 PF04728 LPP: Lipoprotein leuc 27.2 2.5E+02 0.0053 20.4 6.1 20 195-214 31-50 (56)
372 PRK13824 replication initiatio 27.2 5.9E+02 0.013 24.8 10.4 43 121-163 135-177 (404)
373 TIGR02338 gimC_beta prefoldin, 27.1 2.1E+02 0.0045 22.3 5.7 43 147-189 65-107 (110)
374 COG0172 SerS Seryl-tRNA synthe 27.0 4.2E+02 0.009 26.3 8.8 28 198-225 78-105 (429)
375 PF11971 CAMSAP_CH: CAMSAP CH 26.8 49 0.0011 25.3 2.0 73 63-138 4-82 (85)
376 COG4985 ABC-type phosphate tra 26.6 3.3E+02 0.0072 25.4 7.6 27 194-220 220-246 (289)
377 PF04201 TPD52: Tumour protein 26.4 2.2E+02 0.0048 24.7 6.1 34 159-192 32-65 (162)
378 PF08826 DMPK_coil: DMPK coile 26.3 2.6E+02 0.0057 20.4 6.4 29 140-168 23-51 (61)
379 TIGR02043 ZntR Zn(II)-responsi 26.2 3.4E+02 0.0074 21.7 7.1 22 114-135 48-69 (131)
380 KOG0962 DNA repair protein RAD 26.1 7.8E+02 0.017 28.0 11.4 105 106-213 179-286 (1294)
381 cd07627 BAR_Vps5p The Bin/Amph 25.8 4.4E+02 0.0095 22.8 9.2 113 91-203 67-183 (216)
382 KOG2751 Beclin-like protein [S 25.5 7E+02 0.015 25.0 10.0 16 111-126 160-175 (447)
383 PF14073 Cep57_CLD: Centrosome 25.4 4.7E+02 0.01 23.0 8.1 72 148-219 3-81 (178)
384 cd07588 BAR_Amphiphysin The Bi 25.2 4.8E+02 0.01 23.1 10.8 14 107-120 71-84 (211)
385 cd00890 Prefoldin Prefoldin is 25.1 2.3E+02 0.005 21.7 5.6 33 152-184 90-122 (129)
386 cd07664 BAR_SNX2 The Bin/Amphi 25.1 5E+02 0.011 23.3 15.3 56 167-222 130-186 (234)
387 PF10481 CENP-F_N: Cenp-F N-te 25.1 2E+02 0.0043 27.3 5.9 46 167-212 85-133 (307)
388 smart00502 BBC B-Box C-termina 25.0 2.9E+02 0.0063 20.5 10.1 19 194-212 85-103 (127)
389 PF14257 DUF4349: Domain of un 25.0 3.1E+02 0.0067 24.2 7.0 61 158-218 120-185 (262)
390 PF10241 KxDL: Uncharacterized 24.9 3.1E+02 0.0068 20.8 6.5 40 148-187 42-81 (88)
391 KOG4643 Uncharacterized coiled 24.9 1.6E+02 0.0034 32.6 5.8 71 118-188 140-223 (1195)
392 cd07639 BAR_ACAP1 The Bin/Amph 24.9 4.9E+02 0.011 23.0 9.0 77 88-166 39-122 (200)
393 PF09304 Cortex-I_coil: Cortex 24.9 3.8E+02 0.0083 21.8 11.2 18 169-186 50-67 (107)
394 PRK15002 redox-sensitivie tran 24.8 3.4E+02 0.0073 22.8 6.8 23 113-135 56-78 (154)
395 PRK07857 hypothetical protein; 24.7 1.6E+02 0.0034 23.8 4.6 24 165-188 30-53 (106)
396 cd09238 V_Alix_like_1 Protein- 24.3 5.8E+02 0.013 23.7 11.4 30 127-156 194-223 (339)
397 TIGR01062 parC_Gneg DNA topois 24.3 6.7E+02 0.015 26.5 10.2 22 84-105 372-393 (735)
398 COG1382 GimC Prefoldin, chaper 24.3 4.1E+02 0.0088 21.9 8.2 25 160-184 24-48 (119)
399 PRK10698 phage shock protein P 24.2 3E+02 0.0065 24.3 6.8 30 158-187 108-137 (222)
400 KOG2910 Uncharacterized conser 24.2 4.6E+02 0.0099 23.7 7.8 29 132-160 9-41 (209)
401 cd07671 F-BAR_PSTPIP1 The F-BA 24.1 5.2E+02 0.011 23.1 13.9 32 194-225 152-183 (242)
402 smart00721 BAR BAR domain. 24.0 4.3E+02 0.0094 22.1 11.6 13 210-222 214-226 (239)
403 KOG4348 Adaptor protein CMS/SE 23.9 2.4E+02 0.0052 28.6 6.6 47 130-179 574-624 (627)
404 KOG1937 Uncharacterized conser 23.9 7.8E+02 0.017 25.0 10.3 75 146-221 245-319 (521)
405 PF11317 DUF3119: Protein of u 23.6 37 0.00081 27.9 0.9 27 56-83 85-111 (116)
406 PF05983 Med7: MED7 protein; 23.6 4.5E+02 0.0098 22.2 9.0 80 54-145 52-131 (162)
407 PRK13182 racA polar chromosome 23.5 4.8E+02 0.01 22.5 10.5 23 112-134 44-66 (175)
408 PF10481 CENP-F_N: Cenp-F N-te 23.3 5.1E+02 0.011 24.6 8.3 7 124-130 11-17 (307)
409 cd04788 HTH_NolA-AlbR Helix-Tu 23.3 2.5E+02 0.0054 21.2 5.4 22 114-135 47-68 (96)
410 PF01481 Arteri_nucleo: Arteri 23.2 30 0.00065 28.5 0.2 16 64-81 45-60 (116)
411 PF14182 YgaB: YgaB-like prote 23.2 3.6E+02 0.0078 20.9 8.1 53 133-187 12-64 (79)
412 PF12761 End3: Actin cytoskele 23.0 5.5E+02 0.012 22.9 8.8 50 135-184 96-153 (195)
413 PRK10869 recombination and rep 22.8 7.8E+02 0.017 24.7 11.7 17 116-132 273-289 (553)
414 KOG0979 Structural maintenance 22.8 5.2E+02 0.011 28.6 9.2 22 170-191 311-332 (1072)
415 PF08232 Striatin: Striatin fa 22.7 2.3E+02 0.0051 23.2 5.4 41 149-189 25-65 (134)
416 PF06705 SF-assemblin: SF-asse 22.6 5.3E+02 0.012 22.7 12.1 28 194-221 174-201 (247)
417 PF14075 UBN_AB: Ubinuclein co 22.6 2.6E+02 0.0055 24.9 6.0 43 114-157 56-99 (214)
418 PF02994 Transposase_22: L1 tr 22.4 89 0.0019 29.7 3.3 46 167-216 141-186 (370)
419 cd01108 HTH_CueR Helix-Turn-He 22.4 4E+02 0.0086 21.1 7.8 22 113-134 46-67 (127)
420 PF03978 Borrelia_REV: Borreli 22.3 4.6E+02 0.01 22.8 7.2 38 93-130 32-69 (160)
421 PF13747 DUF4164: Domain of un 22.3 3.7E+02 0.0079 20.7 7.0 36 149-184 32-67 (89)
422 PRK10698 phage shock protein P 22.2 5.5E+02 0.012 22.7 12.1 20 165-184 54-73 (222)
423 KOG0612 Rho-associated, coiled 22.1 6.7E+02 0.014 28.5 9.9 9 38-46 391-399 (1317)
424 TIGR02047 CadR-PbrR Cd(II)/Pb( 22.1 4.1E+02 0.0088 21.1 7.0 21 114-134 47-67 (127)
425 KOG4657 Uncharacterized conser 22.1 6.3E+02 0.014 23.3 15.2 35 140-174 63-97 (246)
426 PF12999 PRKCSH-like: Glucosid 22.1 3.5E+02 0.0077 23.6 6.6 8 101-108 103-110 (176)
427 PF14389 Lzipper-MIP1: Leucine 22.0 1.9E+02 0.004 22.2 4.4 16 197-212 63-78 (88)
428 KOG2991 Splicing regulator [RN 22.0 3.5E+02 0.0076 25.6 6.9 24 194-217 291-314 (330)
429 PRK14127 cell division protein 22.0 2.6E+02 0.0056 22.6 5.4 15 123-137 21-35 (109)
430 COG1422 Predicted membrane pro 21.9 3.1E+02 0.0067 24.6 6.3 27 133-159 63-89 (201)
431 PF14817 HAUS5: HAUS augmin-li 21.7 8.6E+02 0.019 25.3 10.3 29 151-179 81-109 (632)
432 cd09237 V_ScBro1_like Protein- 21.6 6.6E+02 0.014 23.4 11.5 28 127-154 200-227 (356)
433 KOG4302 Microtubule-associated 21.4 5.1E+02 0.011 27.2 8.5 119 104-222 71-205 (660)
434 PF08702 Fib_alpha: Fibrinogen 21.3 4.9E+02 0.011 21.7 9.9 42 167-212 94-135 (146)
435 TIGR01005 eps_transp_fam exopo 21.3 7.1E+02 0.015 25.4 9.6 26 194-219 375-400 (754)
436 COG1730 GIM5 Predicted prefold 21.2 2.5E+02 0.0054 23.7 5.4 39 149-187 94-132 (145)
437 cd07616 BAR_Endophilin_B1 The 21.2 6.2E+02 0.013 22.9 10.2 29 62-90 63-96 (229)
438 KOG1694 60s ribosomal protein 21.2 22 0.00048 30.4 -1.0 54 10-69 96-149 (152)
439 PF06810 Phage_GP20: Phage min 21.2 3.8E+02 0.0083 22.5 6.5 56 162-218 26-85 (155)
440 COG1422 Predicted membrane pro 21.2 6E+02 0.013 22.8 7.9 19 149-167 72-90 (201)
441 PF10392 COG5: Golgi transport 21.1 4.4E+02 0.0095 21.1 9.1 71 118-188 33-111 (132)
442 KOG1003 Actin filament-coating 20.9 6.3E+02 0.014 22.8 9.1 31 194-224 164-194 (205)
443 PF00509 Hemagglutinin: Haemag 20.7 3.9E+02 0.0085 27.4 7.4 22 60-82 319-340 (550)
444 KOG2629 Peroxisomal membrane a 20.7 5.9E+02 0.013 24.2 8.1 69 143-214 123-194 (300)
445 KOG3859 Septins (P-loop GTPase 20.5 6E+02 0.013 24.7 8.2 27 99-127 284-310 (406)
446 KOG1118 Lysophosphatidic acid 20.4 8E+02 0.017 23.9 10.5 81 134-223 143-225 (366)
447 cd07653 F-BAR_CIP4-like The F- 20.4 5.7E+02 0.012 22.1 13.1 80 144-223 107-189 (251)
448 PF04871 Uso1_p115_C: Uso1 / p 20.4 4.9E+02 0.011 21.4 8.9 14 213-226 81-94 (136)
449 KOG1318 Helix loop helix trans 20.2 2.5E+02 0.0055 27.7 5.8 42 148-189 282-323 (411)
450 KOG3232 Vacuolar assembly/sort 20.1 4.6E+02 0.01 23.4 6.9 79 116-203 3-85 (203)
451 PF15450 DUF4631: Domain of un 20.0 9.6E+02 0.021 24.6 11.2 78 102-184 309-390 (531)
452 cd04768 HTH_BmrR-like Helix-Tu 20.0 3.2E+02 0.0069 20.6 5.3 22 114-135 47-68 (96)
453 PRK10636 putative ABC transpor 20.0 4.2E+02 0.009 26.8 7.6 52 170-221 563-624 (638)
No 1
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=100.00 E-value=9.9e-69 Score=459.95 Aligned_cols=185 Identities=39% Similarity=0.615 Sum_probs=181.2
Q ss_pred CccCcccccchhhhhhhhhhcccCCCCCCCccccCCchhhhhHHHHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHH
Q 037795 40 WSLPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLN 119 (227)
Q Consensus 40 ~~lPF~K~s~~W~~~EsmeVFk~vPQ~PHF~pL~~~~e~~REg~A~Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~ 119 (227)
+++||+|+||+|++||+||||++|||+|||+||++++|++|||+|+|||++|++|+|+|++++||||++.|+++++||++
T Consensus 1 ~~~pF~K~s~~W~~~E~mevfk~vPQ~PHF~pL~~~~e~~REg~A~Glm~~f~~l~e~v~~l~idd~~~~f~~~~~tl~~ 80 (190)
T PF05266_consen 1 MVLPFVKKSPVWKTIESMEVFKKVPQSPHFSPLQEFKEELREGMAVGLMVTFANLAEKVKKLQIDDSRSSFESLMKTLSE 80 (190)
T ss_pred CCCCcccccchhHHHHHHHHHHcCCCCCCChhhhcCcHHhhhHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh---hhH
Q 037795 120 LESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN---ESE 196 (227)
Q Consensus 120 LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~---d~e 196 (227)
||+|||||++||+||++||+||+++++++++++++++++.+++.++.+++..+.+++++|.+|+++.+.++.++ |++
T Consensus 81 LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~e 160 (190)
T PF05266_consen 81 LEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKE 160 (190)
T ss_pred HHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876554 999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHHHhHhh
Q 037795 197 IAASKSKVDVGNENIQNAQLDFESVAVC 224 (227)
Q Consensus 197 i~~Lks~~~~~~e~~~~ae~eF~svaaa 224 (227)
|++||+++++++++|.+++++|++||||
T Consensus 161 i~~lks~~~~l~~~~~~~e~~F~~~~aa 188 (190)
T PF05266_consen 161 ISRLKSEAEALKEEIENAELEFQSVAAA 188 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999997
No 2
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=97.63 E-value=0.0034 Score=57.60 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhccc-CCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHh---HHHHHHHHHHHHHHHhhhh
Q 037795 87 YMLTFANVVEQTSKLQ-VSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEK---HEQLQEQLLEYECHILEQT 162 (227)
Q Consensus 87 lm~tF~~l~e~v~~l~-idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~---~~~~~~~~k~le~~i~e~~ 162 (227)
+|-+..+++....+.. -+=+.+.+.....++.+||.-||+|.-||.+|++++..+.- +.....+....+.++....
T Consensus 127 yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~ 206 (269)
T PF05278_consen 127 YLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKK 206 (269)
T ss_pred HHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555543322 13356678888999999999999999999999998876443 4445555555666677777
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHH
Q 037795 163 SEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQN 213 (227)
Q Consensus 163 ~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ 213 (227)
.|+....++++..+..+.+++++....+. .+++|+-+-..+.+.+..
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~----rl~~l~~~~~~l~k~~~~ 253 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKG----RLGELEMESTRLSKTIKS 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877776544332 344444444444444333
No 3
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=95.22 E-value=0.26 Score=37.58 Aligned_cols=67 Identities=28% Similarity=0.417 Sum_probs=46.8
Q ss_pred HHHHHHH-hHHhHHHHHH-------HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhH
Q 037795 133 CLSEMQS-IKEKHEQLQE-------QLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKV 204 (227)
Q Consensus 133 RL~kLL~-lK~~~~~~~~-------~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~ 204 (227)
||++||. ||.....+.. ..++++-+|.....|+. -+..++.+|+++-..++..=+.||++|+...
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~-------~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQ-------QIRQKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888886 7776666666 55555555555555544 4555577777777777778899999999877
Q ss_pred HH
Q 037795 205 DV 206 (227)
Q Consensus 205 ~~ 206 (227)
+.
T Consensus 74 e~ 75 (79)
T PF08581_consen 74 EQ 75 (79)
T ss_dssp CH
T ss_pred Hh
Confidence 65
No 4
>PRK11637 AmiB activator; Provisional
Probab=94.98 E-value=0.29 Score=46.51 Aligned_cols=28 Identities=4% Similarity=0.012 Sum_probs=13.0
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
+.+|..++.+....++.+...+..+...
T Consensus 102 ~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 102 NKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 5
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.09 E-value=2.8 Score=34.25 Aligned_cols=69 Identities=16% Similarity=0.318 Sum_probs=44.8
Q ss_pred HhCCCchhhhHHHHHHHHHhHHhHH----HHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 121 ESHGFDVKTVHSCLSEMQSIKEKHE----QLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 121 E~~GFdV~~l~sRL~kLL~lK~~~~----~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
+..++|+..+..-|..||...++-. .+.+.+..+...+...+....+++..+.+.++.+...+.+...+
T Consensus 27 ~~~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l 99 (151)
T PF11559_consen 27 EESEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQL 99 (151)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999998665433 34445555555555666666666666666666666555544443
No 6
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.85 E-value=1.2 Score=41.35 Aligned_cols=108 Identities=20% Similarity=0.173 Sum_probs=53.7
Q ss_pred cccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHH
Q 037795 100 KLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEI 179 (227)
Q Consensus 100 ~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I 179 (227)
+.++++-...-+.|...+..|+.. -........+..+++++++...+...++..++.+..++++.|
T Consensus 15 ~~~~~~~~~E~~~Y~~fL~~l~~~--------------~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 15 DKQLEQAEKERDTYQEFLKKLEEE--------------SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQEL 80 (314)
T ss_dssp -----------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--------------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666665511 112333445555666666666666666677777777777777
Q ss_pred HHHHHHHHHHhhhh---hhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 180 KMLEESKAKLTSKN---ESEIAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 180 ~eLe~~~~~~~~~~---d~ei~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
..|+.+...+..++ +.+...++.+....+++.+.++.+++..
T Consensus 81 ~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 81 EELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766664443 7777777777777777777777776654
No 7
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.14 E-value=2.6 Score=38.27 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=26.1
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESK 186 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~ 186 (227)
|-..+..++.+.+.+..++..+++...+.++++..++++..+|.-.+.++
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555555555555544
No 8
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.93 E-value=4.6 Score=35.24 Aligned_cols=101 Identities=14% Similarity=0.168 Sum_probs=65.8
Q ss_pred chhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh----hhhhHHHhhh
Q 037795 126 DVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS----KNESEIAASK 201 (227)
Q Consensus 126 dV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~----~~d~ei~~Lk 201 (227)
.|..|+..|..--+-|..........+.+++++.+..-+-.-+++.+..+++.-.+|.+.+..+.. +-+-...-|+
T Consensus 70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLE 149 (201)
T PF13851_consen 70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLE 149 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444444444444555556666666666666666666666666666666666555422 2277777888
Q ss_pred hhHHHHHHHHHHHHHhHHHhHhhhC
Q 037795 202 SKVDVGNENIQNAQLDFESVAVCLG 226 (227)
Q Consensus 202 s~~~~~~e~~~~ae~eF~svaaa~~ 226 (227)
..+.++.+.+..-+.++..|++|.+
T Consensus 150 kKl~~l~~~lE~keaqL~evl~~~n 174 (201)
T PF13851_consen 150 KKLQALSEQLEKKEAQLNEVLAAAN 174 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8899999999999999999888764
No 9
>PF15294 Leu_zip: Leucine zipper
Probab=91.51 E-value=9.1 Score=35.63 Aligned_cols=128 Identities=21% Similarity=0.298 Sum_probs=78.3
Q ss_pred HHHHHH-hcccCCCchhhHHHHHHHHHHHHhCCCchhh-------------hHHH-----HHH-HHHhHHhHHHHHHHHH
Q 037795 93 NVVEQT-SKLQVSDPTSIFNGMFEALLNLESHGFDVKT-------------VHSC-----LSE-MQSIKEKHEQLQEQLL 152 (227)
Q Consensus 93 ~l~e~v-~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~-------------l~sR-----L~k-LL~lK~~~~~~~~~~k 152 (227)
..+++- .+|++|.+...=..+.+..+.+|+.+|--.. +... |++ ...++..-.++.+.++
T Consensus 70 ~qAek~~lkl~~diselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~ 149 (278)
T PF15294_consen 70 SQAEKWYLKLQTDISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLK 149 (278)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 5677776666667799999999999886553 2122 333 3345555555666666
Q ss_pred HHHHHHhhhhhhhhhhhhhhHHHHH----------------HHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHH
Q 037795 153 EYECHILEQTSEQSKITVELDHVVK----------------EIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQL 216 (227)
Q Consensus 153 ~le~~i~e~~~e~skle~~l~e~er----------------~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~ 216 (227)
.++++...+-.|++++++.|.++.. .|..|+.+.+.++.+..+-+..+.+....+.+.+..+++
T Consensus 150 ~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~Kh 229 (278)
T PF15294_consen 150 SLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKH 229 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555566666666555544 345677777776665555555555566666666666666
Q ss_pred hHHH
Q 037795 217 DFES 220 (227)
Q Consensus 217 eF~s 220 (227)
++-.
T Consensus 230 elL~ 233 (278)
T PF15294_consen 230 ELLR 233 (278)
T ss_pred HHHh
Confidence 5543
No 10
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.43 E-value=5.1 Score=40.27 Aligned_cols=126 Identities=16% Similarity=0.201 Sum_probs=68.9
Q ss_pred HHHHhcccCCCchhh-HHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHh---HHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 037795 95 VEQTSKLQVSDPTSI-FNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEK---HEQLQEQLLEYECHILEQTSEQSKITV 170 (227)
Q Consensus 95 ~e~v~~l~idD~~s~-fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~---~~~~~~~~k~le~~i~e~~~e~skle~ 170 (227)
.|+|..+--.+.... +..-++.|.-|+- +..++..|..+..=+.+ -..+..++..++.++.+...+...+++
T Consensus 155 GE~I~~la~~~~~~~~l~~Ai~~LlGl~~----~~~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~ 230 (650)
T TIGR03185 155 GEKIEALANPDRLASLLKEAIEVLLGLDL----IDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQ 230 (650)
T ss_pred HHHHHHHhccccchHHHHHHHHHHhCcHH----HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777765333333 6666666554443 44455555554331100 112344555555555555555555555
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhh-------hhHHHhhhhhHHHHHHHHHHHHHhHHHhHhh
Q 037795 171 ELDHVVKEIKMLEESKAKLTSKN-------ESEIAASKSKVDVGNENIQNAQLDFESVAVC 224 (227)
Q Consensus 171 ~l~e~er~I~eLe~~~~~~~~~~-------d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa 224 (227)
.+...+..+.+++.++..++..- -.+..+++.....+++.....+.++...++.
T Consensus 231 ~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~ 291 (650)
T TIGR03185 231 EIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAAD 291 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55555555555555444443321 3334577778888888888888888776654
No 11
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.37 E-value=3.5 Score=39.71 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=6.0
Q ss_pred HhHHHHHHHHHHHHHH
Q 037795 142 EKHEQLQEQLLEYECH 157 (227)
Q Consensus 142 ~~~~~~~~~~k~le~~ 157 (227)
+....+..+.+.++..
T Consensus 306 d~i~~l~~~l~~l~~~ 321 (562)
T PHA02562 306 DKLKELQHSLEKLDTA 321 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 12
>PRK11637 AmiB activator; Provisional
Probab=91.29 E-value=7.8 Score=36.89 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=10.5
Q ss_pred HhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 037795 158 ILEQTSEQSKITVELDHVVKEIKMLEES 185 (227)
Q Consensus 158 i~e~~~e~skle~~l~e~er~I~eLe~~ 185 (227)
|...+.++..++.+++..+..|.+++.+
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 13
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.70 E-value=7.2 Score=34.96 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHHhH
Q 037795 144 HEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESVA 222 (227)
Q Consensus 144 ~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~sva 222 (227)
.....++.+.+...+.....++.++......+++.|.+++.....-...-...|..++.+...+...|.....+|+..+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777788888888888888888888888888877777666688888888888888888888777777653
No 14
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.84 E-value=7.6 Score=39.84 Aligned_cols=144 Identities=15% Similarity=0.218 Sum_probs=86.9
Q ss_pred cCCchhhhhHHHHHHHH--HHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhH---------
Q 037795 73 DGSKDMYLEGLVTGYML--TFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIK--------- 141 (227)
Q Consensus 73 ~~~~e~~REg~A~Glm~--tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK--------- 141 (227)
-...++-|+.+|..+-. .|-+-+++|-+ .-|.--.-.--+-..-+-=.|+.+....+...+=-.=+
T Consensus 337 ~~~ddH~RDALAAA~kAY~~yk~kl~~vEr---~~~~~g~~~d~~rika~VIrG~~l~eal~~~~e~~~p~e~~~~~~~e 413 (652)
T COG2433 337 SVSDDHERDALAAAYKAYLAYKPKLEKVER---KLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTEEEE 413 (652)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHH---hcccccchhhHHHHHHHeecCCcHHHHHHHHHhhhcccccccccccc
Confidence 33456789999887753 34444444332 11111011111122233345887777777666532211
Q ss_pred -HhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh-------------hhHHHhhhhhHHHH
Q 037795 142 -EKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN-------------ESEIAASKSKVDVG 207 (227)
Q Consensus 142 -~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~-------------d~ei~~Lks~~~~~ 207 (227)
-.-+.+...++++++.++..+.+.+.|+..+.++++.|.+|+.+++.++.+. +.+|.+|+.....-
T Consensus 414 ~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~ 493 (652)
T COG2433 414 RREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEK 493 (652)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1124466788899999999999999999999999999999999999875431 55555555555544
Q ss_pred HHHHHHHHHhHH
Q 037795 208 NENIQNAQLDFE 219 (227)
Q Consensus 208 ~e~~~~ae~eF~ 219 (227)
...+.-.+.+|.
T Consensus 494 ~~~ve~L~~~l~ 505 (652)
T COG2433 494 KKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 15
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=89.51 E-value=4.8 Score=38.00 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=55.6
Q ss_pred chhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 037795 106 PTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEES 185 (227)
Q Consensus 106 ~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~ 185 (227)
....++.+.+.+..++..+=-+=++..||..|-.|...-+..-..+..++.........+.+.+..|..++..+.+....
T Consensus 293 ~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~ 372 (388)
T PF04912_consen 293 QESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMET 372 (388)
T ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777787777777777777777777777777777766666666666666665554443
No 16
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=89.40 E-value=5.6 Score=33.53 Aligned_cols=87 Identities=20% Similarity=0.305 Sum_probs=53.2
Q ss_pred HHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHh
Q 037795 120 LESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAA 199 (227)
Q Consensus 120 LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~ 199 (227)
+..||=+|..++++.+++ +..+..+..+++...++|...... .....++...|.+|+.+....+..-.++|..
T Consensus 8 m~~~gk~i~~~K~~~~~~---~~e~~~~k~ql~~~d~~i~~Lk~~----~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~ 80 (155)
T PF06810_consen 8 MAENGKDIEAPKAKVDKV---KEERDNLKTQLKEADKQIKDLKKS----AKDNEELKKQIEELQAKNKTAKEEYEAKLAQ 80 (155)
T ss_pred HHHccCcHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888998899888887 444444444555555544444331 2255666777777777665555555666666
Q ss_pred hhhhHHHHHHHHHHH
Q 037795 200 SKSKVDVGNENIQNA 214 (227)
Q Consensus 200 Lks~~~~~~e~~~~a 214 (227)
++ -..+|+.++..+
T Consensus 81 ~~-~~~ai~~al~~a 94 (155)
T PF06810_consen 81 MK-KDSAIKSALKGA 94 (155)
T ss_pred HH-HHHHHHHHHHHc
Confidence 66 355566666553
No 17
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.04 E-value=9.5 Score=35.30 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=10.7
Q ss_pred hHHhHHHHHHHHHHHHHH
Q 037795 140 IKEKHEQLQEQLLEYECH 157 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~ 157 (227)
++..+..+..+...++..
T Consensus 182 l~~~~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 182 LRERKAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666666655554
No 18
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.73 E-value=15 Score=32.11 Aligned_cols=64 Identities=11% Similarity=0.153 Sum_probs=35.5
Q ss_pred CchhhhHHHHHHHHH-----hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 125 FDVKTVHSCLSEMQS-----IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 125 FdV~~l~sRL~kLL~-----lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
-+...++.+++++|. -......+..+....+.++........++...+......|.++++++..
T Consensus 34 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 34 EENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777666 4444444555555555555555555555555555555555555554444
No 19
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.84 E-value=7.6 Score=32.25 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=22.8
Q ss_pred HhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 139 SIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 139 ~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
.||.......+....++.++...+....+++++|..+.+++..|+.++..
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~ 53 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDK 53 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444443
No 20
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.48 E-value=16 Score=32.69 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHh-----HHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHH
Q 037795 108 SIFNGMFEALLNLESHGFDVKTVHSCLSEMQSI-----KEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKML 182 (227)
Q Consensus 108 s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~l-----K~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eL 182 (227)
..|.+|++....||.. -+.|...|+.+..- ...+..+..++..+...|.....++.+++..++.....+.++
T Consensus 11 dRla~YIekVr~LE~~---N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~ 87 (312)
T PF00038_consen 11 DRLASYIEKVRFLEQE---NKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDL 87 (312)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---hhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence 3455666666666653 34455555554443 223555778888888888889999999999988888888888
Q ss_pred HHHHHHHhh---hhhhHHHhhhhhHHHHHHHHHHHHHh
Q 037795 183 EESKAKLTS---KNESEIAASKSKVDVGNENIQNAQLD 217 (227)
Q Consensus 183 e~~~~~~~~---~~d~ei~~Lks~~~~~~e~~~~ae~e 217 (227)
+.+...... ....+|..|+..++...-...+.+.+
T Consensus 88 r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~ 125 (312)
T PF00038_consen 88 RRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQ 125 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHH
Confidence 777665422 23666666666666555444444433
No 21
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.19 E-value=15 Score=34.04 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh-------hhhHHHhhhhhHHHHHH
Q 037795 147 LQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK-------NESEIAASKSKVDVGNE 209 (227)
Q Consensus 147 ~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~-------~d~ei~~Lks~~~~~~e 209 (227)
...+....++.+.+.+.++..+++.+.++...+.+++.+++.+... ...||.+||..++.++.
T Consensus 221 ~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 221 QKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444444444333211 15556666666655554
No 22
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=87.15 E-value=17 Score=30.76 Aligned_cols=122 Identities=17% Similarity=0.203 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCch----------hhHHHHHHHHHHHHhC----CCchhhhHHHHHHHHHhHHhHHHH
Q 037795 82 GLVTGYMLTFANVVEQTSKLQVSDPT----------SIFNGMFEALLNLESH----GFDVKTVHSCLSEMQSIKEKHEQL 147 (227)
Q Consensus 82 g~A~Glm~tF~~l~e~v~~l~idD~~----------s~fe~~~~tl~~LE~~----GFdV~~l~sRL~kLL~lK~~~~~~ 147 (227)
.++.-+.+.|.+.+..+.+.+-.... ...+-+++.+ .-|.| ||-.- +---|..+..+-.+..++
T Consensus 53 ~~~~~~~~lf~ds~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~f-raQRN~YIsGf~Lf-L~l~I~r~~~li~~l~~~ 130 (192)
T PF05529_consen 53 ILLAILLLLFLDSIRRMYKYSSEYEEAKDDHPNPDRTEDQVLAKKF-RAQRNMYISGFALF-LSLVIRRVHSLIKELIKL 130 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCCCccchhHHHHHHHH-HHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34445567778877777666332221 2333334443 34443 77543 222344444444455555
Q ss_pred HHHHHHHHHHHhhhhhhhhh-hhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHH
Q 037795 148 QEQLLEYECHILEQTSEQSK-ITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNE 209 (227)
Q Consensus 148 ~~~~k~le~~i~e~~~e~sk-le~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e 209 (227)
++..+.++++....+....+ .+++.+..+..|.+|+.++.. ++.++..||..++..++
T Consensus 131 ~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~----~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 131 EEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK----KEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 55556666654444433333 334445555556666654433 34444455555444443
No 23
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.01 E-value=30 Score=34.50 Aligned_cols=49 Identities=8% Similarity=0.272 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcc---cCCCchhhHHHHHHHHHHHHhCCCchhhh--HHHHHH
Q 037795 88 MLTFANVVEQTSKL---QVSDPTSIFNGMFEALLNLESHGFDVKTV--HSCLSE 136 (227)
Q Consensus 88 m~tF~~l~e~v~~l---~idD~~s~fe~~~~tl~~LE~~GFdV~~l--~sRL~k 136 (227)
|-.+...++.|.+| +-++.+..|+++.....+|.+.||...++ -.+|..
T Consensus 207 ~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~ 260 (569)
T PRK04778 207 LAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQD 260 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHH
Confidence 34455555555433 23456789999999999999999999874 444444
No 24
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=85.39 E-value=13 Score=37.82 Aligned_cols=90 Identities=21% Similarity=0.256 Sum_probs=65.7
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh------hhHHHhhhhhHHHHH
Q 037795 135 SEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN------ESEIAASKSKVDVGN 208 (227)
Q Consensus 135 ~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~------d~ei~~Lks~~~~~~ 208 (227)
.+|-.|+.....+.....+++..+...+.+..++..++.+.+....++++++...+.-. +..|.+|+.-+++-.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~ 407 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASE 407 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 34666666666666666667777777777777777777777777777777766543321 788999999999999
Q ss_pred HHHHHHHHhHHHhHhh
Q 037795 209 ENIQNAQLDFESVAVC 224 (227)
Q Consensus 209 e~~~~ae~eF~svaaa 224 (227)
+.+.....+++.+-+.
T Consensus 408 ~rl~~L~~qWe~~R~p 423 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAP 423 (594)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999998888877544
No 25
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.34 E-value=10 Score=39.28 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=47.9
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh----------------------------
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS---------------------------- 191 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~---------------------------- 191 (227)
+|....+++.+-+.++.++.+.+..+.+=++.+..+||++.+.+++++.+..
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~ 537 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ 537 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc
Confidence 4444555555555666666666666665566666666666554444333100
Q ss_pred -----------hhhhHHHhhhhhHHHHHHHHHHHHHhHH
Q 037795 192 -----------KNESEIAASKSKVDVGNENIQNAQLDFE 219 (227)
Q Consensus 192 -----------~~d~ei~~Lks~~~~~~e~~~~ae~eF~ 219 (227)
.++.||-+|..+...-++.|..+|.+.+
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1267777777777777888877777664
No 26
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.26 E-value=18 Score=31.54 Aligned_cols=107 Identities=15% Similarity=0.196 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 037795 112 GMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS 191 (227)
Q Consensus 112 ~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~ 191 (227)
.+-++|.++..+=-|++. .=|.-.-++|+..+.+...-...++.+.+...+..++.+-+...+....+|+.++.--..
T Consensus 6 ~He~af~~iK~YYndIT~--~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k 83 (201)
T PF13851_consen 6 NHEKAFQEIKNYYNDITL--NNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556655555444442 334444556666666655556666678888888888888888777777777777665211
Q ss_pred ----------h---hhhHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 192 ----------K---NESEIAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 192 ----------~---~d~ei~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
. ...+|..|+.+-+...+.|.-++.|...
T Consensus 84 dK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erde 125 (201)
T PF13851_consen 84 DKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDE 125 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1777777777777777777766665543
No 27
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.88 E-value=12 Score=40.83 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=12.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHH
Q 037795 152 LEYECHILEQTSEQSKITVELDHVVKEIKMLE 183 (227)
Q Consensus 152 k~le~~i~e~~~e~skle~~l~e~er~I~eLe 183 (227)
..++..+.+...+...+...+.+++..|..++
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~~~~~~~~~~ 915 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLE 915 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33333344444444444444333333333333
No 28
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.78 E-value=8.3 Score=36.05 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=7.9
Q ss_pred hHHhHHHHHHHHHHHHHH
Q 037795 140 IKEKHEQLQEQLLEYECH 157 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~ 157 (227)
+++.+..+..+...++..
T Consensus 177 l~~~~~~L~~e~~~L~~~ 194 (312)
T smart00787 177 LRDRKDALEEELRQLKQL 194 (312)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444444444444444443
No 29
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.56 E-value=24 Score=30.82 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=43.4
Q ss_pred HhCCCchhhhHHHHHHH-----------HHhHHhHHHHHHHHHHHHHH--------HhhhhhhhhhhhhhhHHHHHHHHH
Q 037795 121 ESHGFDVKTVHSCLSEM-----------QSIKEKHEQLQEQLLEYECH--------ILEQTSEQSKITVELDHVVKEIKM 181 (227)
Q Consensus 121 E~~GFdV~~l~sRL~kL-----------L~lK~~~~~~~~~~k~le~~--------i~e~~~e~skle~~l~e~er~I~e 181 (227)
..|-=+|++++.+|.+. -.......+..++++.+++- -.+....++.++..+.+.+++|..
T Consensus 64 ~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~ 143 (194)
T PF15619_consen 64 QRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQE 143 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677777777662 11222222333444444432 234556677888888899999999
Q ss_pred HHHHHHHHhhh
Q 037795 182 LEESKAKLTSK 192 (227)
Q Consensus 182 Le~~~~~~~~~ 192 (227)
|+.++......
T Consensus 144 Lek~leL~~k~ 154 (194)
T PF15619_consen 144 LEKQLELENKS 154 (194)
T ss_pred HHHHHHHHhhH
Confidence 98887775443
No 30
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.49 E-value=9.6 Score=36.73 Aligned_cols=14 Identities=0% Similarity=-0.273 Sum_probs=6.9
Q ss_pred CCCccccCCchhhh
Q 037795 67 PHFNLLDGSKDMYL 80 (227)
Q Consensus 67 PHF~pL~~~~e~~R 80 (227)
..|.|+....+.=|
T Consensus 139 ~~f~~f~~~~~~er 152 (562)
T PHA02562 139 AGYVPFMQLSAPAR 152 (562)
T ss_pred CchhhHhcCChHhH
Confidence 44556555444433
No 31
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=83.92 E-value=30 Score=32.52 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.4
Q ss_pred HHhhhhhHHHHHHHHHHHH
Q 037795 197 IAASKSKVDVGNENIQNAQ 215 (227)
Q Consensus 197 i~~Lks~~~~~~e~~~~ae 215 (227)
...||+-.+++-|++||.|
T Consensus 272 ~vElK~~IEqmREQVQNiE 290 (290)
T COG1561 272 VVELKVLIEQMREQVQNIE 290 (290)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 3568899999999999864
No 32
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.85 E-value=27 Score=32.68 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=26.5
Q ss_pred HhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh-------hhhHHHhhhhhHHHHHHH
Q 037795 158 ILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK-------NESEIAASKSKVDVGNEN 210 (227)
Q Consensus 158 i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~-------~d~ei~~Lks~~~~~~e~ 210 (227)
+.+.+.+++.+...|.+...++.+++.+++.+... .-.||.+|+..++.++..
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443221 156666666666666554
No 33
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=83.84 E-value=24 Score=32.73 Aligned_cols=39 Identities=5% Similarity=0.032 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhC
Q 037795 85 TGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESH 123 (227)
Q Consensus 85 ~Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~ 123 (227)
--+..+|...++....++..--.....++..-+..|+..
T Consensus 131 ~~l~~al~~AL~~l~~mR~~EG~~L~~dl~~rl~~i~~~ 169 (291)
T TIGR00255 131 ALILGALEEALLDFINMREFEGENLKSDIVQRLDLIERE 169 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777776666666654
No 34
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=82.61 E-value=10 Score=34.01 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=32.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHHhHhh
Q 037795 163 SEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESVAVC 224 (227)
Q Consensus 163 ~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa 224 (227)
.++..+.+.+.+.+..|..|.+ .+..++.+..+|+.++..+.+....++-+...++++
T Consensus 75 eEk~~Le~e~~e~~~~i~~l~e----e~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~ 132 (246)
T PF00769_consen 75 EEKEQLEQELREAEAEIARLEE----ESERKEEEAEELQEELEEAREDEEEAKEELLEVMSA 132 (246)
T ss_dssp ------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444444444444333 244458888999999999999888888887666554
No 35
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=81.55 E-value=19 Score=32.38 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh---hhHHHhhhhhHHHHHHH
Q 037795 146 QLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN---ESEIAASKSKVDVGNEN 210 (227)
Q Consensus 146 ~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~---d~ei~~Lks~~~~~~e~ 210 (227)
.+..++..|...=..|..++..|.+.+.++|..|.+.+.+....+..- ..++..|+..++.+-.+
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556666677788888889998888888766654432 44677777666666555
No 36
>PRK09039 hypothetical protein; Validated
Probab=81.13 E-value=49 Score=31.12 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=9.2
Q ss_pred HHHHHhcccCCCchhhHHHH
Q 037795 94 VVEQTSKLQVSDPTSIFNGM 113 (227)
Q Consensus 94 l~e~v~~l~idD~~s~fe~~ 113 (227)
++--+..-+++.-...+..+
T Consensus 39 ~~q~fLs~~i~~~~~eL~~L 58 (343)
T PRK09039 39 VAQFFLSREISGKDSALDRL 58 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 34444444444444444444
No 37
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=80.94 E-value=25 Score=30.65 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=22.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhh---hhhHHHhhhhhHHHHHHHHHHHHHhH
Q 037795 169 TVELDHVVKEIKMLEESKAKLTSK---NESEIAASKSKVDVGNENIQNAQLDF 218 (227)
Q Consensus 169 e~~l~e~er~I~eLe~~~~~~~~~---~d~ei~~Lks~~~~~~e~~~~ae~eF 218 (227)
+++.+++|.+|.+|++++..++.. .+..--...+++.....++..++.+.
T Consensus 123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEI 175 (190)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555554444433 23344444444444444444444433
No 38
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=80.90 E-value=33 Score=35.37 Aligned_cols=111 Identities=11% Similarity=0.150 Sum_probs=70.7
Q ss_pred hhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHH-------------HHHHHHHHHHHHhhhhhhhhhhhhhhH
Q 037795 107 TSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQ-------------LQEQLLEYECHILEQTSEQSKITVELD 173 (227)
Q Consensus 107 ~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~-------------~~~~~k~le~~i~e~~~e~skle~~l~ 173 (227)
...++++...+++++..-=.|+.+.-||.++.+...-..+ ..+..++|...-......++.++..++
T Consensus 127 k~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~ 206 (629)
T KOG0963|consen 127 KEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKIS 206 (629)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777887888888888888886654333332 233444555544455555667777788
Q ss_pred HHHHHHHHHHHHHHHHhhhh-------hhHHHhhhhhHHHHHHHHHHHHHh
Q 037795 174 HVVKEIKMLEESKAKLTSKN-------ESEIAASKSKVDVGNENIQNAQLD 217 (227)
Q Consensus 174 e~er~I~eLe~~~~~~~~~~-------d~ei~~Lks~~~~~~e~~~~ae~e 217 (227)
.+.++|..-+.++..++.+- -++|.-...+++.+++.+..++.+
T Consensus 207 ~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e 257 (629)
T KOG0963|consen 207 SLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLERE 257 (629)
T ss_pred HHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777777776662 445555555566666666655554
No 39
>PRK10869 recombination and repair protein; Provisional
Probab=80.18 E-value=47 Score=33.19 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=42.9
Q ss_pred HHhCCCch---hhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 037795 120 LESHGFDV---KTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESK 186 (227)
Q Consensus 120 LE~~GFdV---~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~ 186 (227)
++..-||. ..+..||..|-.||..|..-.++.....+++...-..+...+..+.+++.++.+++.++
T Consensus 288 ~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l 357 (553)
T PRK10869 288 LDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQA 357 (553)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 34456666 67788999999999988865555555555555555555555555555555555555543
No 40
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=79.83 E-value=34 Score=34.57 Aligned_cols=73 Identities=11% Similarity=0.199 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 149 EQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 149 ~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
.+-..+.+++..-+.++..+.+++.+....|..||.++...+.+=...|+-|=-++...|+.+-.-++++++.
T Consensus 441 ~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 441 AECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555556666666666666666666666666555555655556666666655555555543
No 41
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=79.73 E-value=5.6 Score=34.08 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccCCC
Q 037795 80 LEGLVTGYMLTFANVVEQTSKLQVSD 105 (227)
Q Consensus 80 REg~A~Glm~tF~~l~e~v~~l~idD 105 (227)
||..-..++-+|.-|++.+..|....
T Consensus 15 ~e~~~~~li~ay~~L~d~~~~l~~~~ 40 (194)
T PF08614_consen 15 REKAFAELIDAYNRLADRTSLLKAEN 40 (194)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 33334455667777777776665443
No 42
>smart00338 BRLZ basic region leucin zipper.
Probab=79.01 E-value=19 Score=25.41 Aligned_cols=56 Identities=13% Similarity=0.262 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 037795 130 VHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEES 185 (227)
Q Consensus 130 l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~ 185 (227)
.+.++..=.+-+..+.+....+..|+.++...+.+.+.|...+..+...+..|..+
T Consensus 7 ~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 7 RRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444556667777777888888888888888888888877777777776664
No 43
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=78.70 E-value=73 Score=31.85 Aligned_cols=12 Identities=33% Similarity=0.365 Sum_probs=5.5
Q ss_pred HHHHHHhHHHhH
Q 037795 211 IQNAQLDFESVA 222 (227)
Q Consensus 211 ~~~ae~eF~sva 222 (227)
-+....+|+.+|
T Consensus 108 ~~~L~~~F~~LA 119 (475)
T PRK10361 108 EQRLSEQFENLA 119 (475)
T ss_pred HHHHHHHHHHHH
Confidence 334444555444
No 44
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.59 E-value=6.5 Score=30.57 Aligned_cols=51 Identities=22% Similarity=0.452 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHH
Q 037795 80 LEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCL 134 (227)
Q Consensus 80 REg~A~Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL 134 (227)
-+..|.|=.-+|+.=+|-+-- .-...-.+..+.++++-.|||||+.++..+
T Consensus 8 s~tva~~QLrafIerIERlEe----Ek~~i~~dikdvy~eakg~GFDvKa~r~ii 58 (85)
T COG3750 8 SQTVAAGQLRAFIERIERLEE----EKKTIADDIKDVYAEAKGHGFDVKAVRTII 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 467888888888766654321 112334566778999999999999998754
No 45
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=78.29 E-value=16 Score=28.98 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=15.8
Q ss_pred HHHHHHHHhCCCchhhhHHHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCLSE 136 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL~k 136 (227)
+..+..|...||.+..++.-|..
T Consensus 45 l~~I~~lr~~G~~L~~I~~~l~~ 67 (118)
T cd04776 45 LKLILRGKRLGFSLEEIRELLDL 67 (118)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHh
Confidence 34455577889998887766653
No 46
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=78.08 E-value=26 Score=26.88 Aligned_cols=33 Identities=9% Similarity=0.264 Sum_probs=21.3
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHHHhHhhhC
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFESVAVCLG 226 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa~~ 226 (227)
-.+...++.....+++.+..++.+++..+..++
T Consensus 73 ~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 73 KAEVKELKEEIKELEEQLKELEEELNELLLSIP 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334555666677777777777777777766554
No 47
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=77.79 E-value=21 Score=37.46 Aligned_cols=74 Identities=20% Similarity=0.292 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 143 KHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 143 ~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
-+..++..+.++.+++....+|...+-.-+.+.++.|.+|.++.+.. +.+|..|+...+.++.++...+++++.
T Consensus 86 ~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~----e~~~~~l~~~l~~~eken~~Lkye~~~ 159 (769)
T PF05911_consen 86 IKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQA----EAEIEDLMARLESTEKENSSLKYELHV 159 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555566666666666666677777777777755543 444444444444444444444444443
No 48
>PRK11820 hypothetical protein; Provisional
Probab=76.38 E-value=62 Score=30.01 Aligned_cols=41 Identities=7% Similarity=0.216 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhC
Q 037795 83 LVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESH 123 (227)
Q Consensus 83 ~A~Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~ 123 (227)
.--.+.-++...++....++.........++..-+..|+..
T Consensus 127 ~~~~l~~al~~AL~~l~~~R~~EG~~L~~dl~~rl~~i~~~ 167 (288)
T PRK11820 127 LWAALLAALDEALDDLIEMREREGAALKADLLQRLDAIEAL 167 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777788888888777777777777666666543
No 49
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=76.22 E-value=40 Score=37.29 Aligned_cols=42 Identities=7% Similarity=0.142 Sum_probs=25.8
Q ss_pred chhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHH
Q 037795 106 PTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQL 147 (227)
Q Consensus 106 ~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~ 147 (227)
+...+..+-++|..++.+.=+...+..++..|-.|...+..+
T Consensus 218 ~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y 259 (1353)
T TIGR02680 218 DDDELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRY 259 (1353)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677777777776666666666666655555544443
No 50
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=75.82 E-value=48 Score=28.04 Aligned_cols=14 Identities=29% Similarity=0.441 Sum_probs=9.1
Q ss_pred HHHHHHhCCCchhh
Q 037795 116 ALLNLESHGFDVKT 129 (227)
Q Consensus 116 tl~~LE~~GFdV~~ 129 (227)
-...||+.||...-
T Consensus 7 ~v~~Le~~Gft~~Q 20 (177)
T PF07798_consen 7 FVKRLEAAGFTEEQ 20 (177)
T ss_pred HHHHHHHCCCCHHH
Confidence 34567777877654
No 51
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=75.72 E-value=68 Score=33.13 Aligned_cols=6 Identities=17% Similarity=0.440 Sum_probs=3.3
Q ss_pred cccCCC
Q 037795 60 FQKMPQ 65 (227)
Q Consensus 60 Fk~vPQ 65 (227)
|..|||
T Consensus 138 ~~~~~q 143 (1179)
T TIGR02168 138 YSIIEQ 143 (1179)
T ss_pred chheec
Confidence 445666
No 52
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.31 E-value=29 Score=32.16 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 147 LQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 147 ~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
+....+..+++|.....++.+++.+|++.+.-|.+.++
T Consensus 64 ~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 64 IQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444443
No 53
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=75.28 E-value=13 Score=34.64 Aligned_cols=60 Identities=10% Similarity=0.131 Sum_probs=49.3
Q ss_pred hhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 037795 128 KTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKA 187 (227)
Q Consensus 128 ~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~ 187 (227)
++-|-|++.=.....+|.++++.+++|++++...-+....|...+...-+...|+.|+..
T Consensus 206 kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~ 265 (279)
T KOG0837|consen 206 KLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVM 265 (279)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777888899999999999999999999999999998888888888777543
No 54
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.12 E-value=18 Score=39.08 Aligned_cols=101 Identities=19% Similarity=0.315 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhcccCCCchhhHHHHHHHH----------------------HHHHhCCCchhhhH-----------H
Q 037795 86 GYMLTFANVVEQTSKLQVSDPTSIFNGMFEAL----------------------LNLESHGFDVKTVH-----------S 132 (227)
Q Consensus 86 Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl----------------------~~LE~~GFdV~~l~-----------s 132 (227)
-++.-.++++|.|--+-+|-.+. ++.+++| ++.|+-|=+++..- .
T Consensus 301 ~~k~emad~ad~iEmaTldKEmA--EERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~ 378 (1243)
T KOG0971|consen 301 RYKEEMADTADAIEMATLDKEMA--EERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNA 378 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHH
Confidence 36777788888887777765543 2222222 24556677774321 2
Q ss_pred HHHH-HHHhHH-------hHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 133 CLSE-MQSIKE-------KHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 133 RL~k-LL~lK~-------~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
||.. |+.++| .+.++.+++......+.+...-+.+|...+|.+|.+|++|++|.-.
T Consensus 379 rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDA 442 (1243)
T KOG0971|consen 379 RLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDA 442 (1243)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 444443 4555666666666667777778889999999999999999999766
No 55
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=75.10 E-value=14 Score=31.70 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=9.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHh
Q 037795 196 EIAASKSKVDVGNENIQNAQLD 217 (227)
Q Consensus 196 ei~~Lks~~~~~~e~~~~ae~e 217 (227)
|+..|+-..+.+++.+...+.|
T Consensus 152 E~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 152 ELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 56
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.89 E-value=35 Score=30.14 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=11.7
Q ss_pred hhHHHhhhhhHHHHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQNAQ 215 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae 215 (227)
..++..++.+++.++...++.+
T Consensus 145 ~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 145 KNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544
No 57
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=74.71 E-value=6.4 Score=40.18 Aligned_cols=97 Identities=14% Similarity=0.270 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCc------hhhhHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037795 84 VTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFD------VKTVHSCLSEMQSIKEKHEQLQEQLLEYECH 157 (227)
Q Consensus 84 A~Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFd------V~~l~sRL~kLL~lK~~~~~~~~~~k~le~~ 157 (227)
|-.+-..|. +++|-+|-+|| |+.++ ++|=|. ++.+|.|=+.=+.-+++|.++++..-.|+-.
T Consensus 452 a~a~~iPF~--vd~IinLp~~d----Fne~l------s~~~lte~QLslIrDIRRRgKNkvAAQnCRKRKLd~I~nLE~e 519 (604)
T KOG3863|consen 452 AKALHIPFS--VDEIINLPVDD----FNEML------SKYKLTEEQLSLIRDIRRRGKNKVAAQNCRKRKLDCILNLEDE 519 (604)
T ss_pred hhhccCCCc--hHHhcCCcHHH----HHHHH------HhcccCHHHHHHhhccccccccchhccchhhhHHHHHHHHHHH
Confidence 334444554 45887887777 55543 455555 6667777666778889999999999999999
Q ss_pred HhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 037795 158 ILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK 192 (227)
Q Consensus 158 i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~ 192 (227)
+..+..++.++..+.++.++.+-++.+++..|-..
T Consensus 520 v~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~ 554 (604)
T KOG3863|consen 520 VEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQE 554 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887444
No 58
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=74.59 E-value=60 Score=28.61 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=42.1
Q ss_pred HHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh--h-hhhHHHhhhhhHHHHHHHHHHHHHh
Q 037795 141 KEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS--K-NESEIAASKSKVDVGNENIQNAQLD 217 (227)
Q Consensus 141 K~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~--~-~d~ei~~Lks~~~~~~e~~~~ae~e 217 (227)
-.....+..+++.+...+...+..-.+..+..+..+.+|..|.+++..+.. . -...+..|+..++.++..+...+..
T Consensus 140 E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 140 ESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444555556666777777777776655311 1 1444555555555555555555554
Q ss_pred HHHh
Q 037795 218 FESV 221 (227)
Q Consensus 218 F~sv 221 (227)
|..|
T Consensus 220 ~~~~ 223 (237)
T PF00261_consen 220 YKKV 223 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 59
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.10 E-value=51 Score=32.99 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHH
Q 037795 147 LQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVG 207 (227)
Q Consensus 147 ~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~ 207 (227)
+....++..++..+.+-+...+-.+.+..-.++.++++.+......+|..|-.|+..+..+
T Consensus 387 ~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 387 LQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444444444444444455556666666677777766666666677777776666554
No 60
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=73.65 E-value=75 Score=36.71 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=50.4
Q ss_pred HHHHHHhCCCchhhhHHHHHHHHH-----------hHHhHHHHHHHHHHHHH--------HHhhhhhhhhhhhhhhHHHH
Q 037795 116 ALLNLESHGFDVKTVHSCLSEMQS-----------IKEKHEQLQEQLLEYEC--------HILEQTSEQSKITVELDHVV 176 (227)
Q Consensus 116 tl~~LE~~GFdV~~l~sRL~kLL~-----------lK~~~~~~~~~~k~le~--------~i~e~~~e~skle~~l~e~e 176 (227)
--..+++--|++-+|+++|++|-. ++....+..-..-.+-+ .+....++.++++.++..++
T Consensus 1248 l~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke 1327 (1822)
T KOG4674|consen 1248 LRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKE 1327 (1822)
T ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556677899999999887432 22222222212222211 15556778889999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 037795 177 KEIKMLEESKAKLTSK 192 (227)
Q Consensus 177 r~I~eLe~~~~~~~~~ 192 (227)
++|.++...+..++.+
T Consensus 1328 ~~~~el~~~~~~~q~~ 1343 (1822)
T KOG4674|consen 1328 NLIAELKKELNRLQEK 1343 (1822)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988743
No 61
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.52 E-value=37 Score=37.15 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 143 KHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 143 ~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
.+.++..++..+...+.....+...++..+......+..++.++..+
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555554443
No 62
>PRK01156 chromosome segregation protein; Provisional
Probab=73.50 E-value=60 Score=33.65 Aligned_cols=21 Identities=5% Similarity=-0.045 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHHhHHhHHHH
Q 037795 127 VKTVHSCLSEMQSIKEKHEQL 147 (227)
Q Consensus 127 V~~l~sRL~kLL~lK~~~~~~ 147 (227)
...+..+++++..++.....+
T Consensus 560 l~~l~~~~~~~~~~~~~~~~~ 580 (895)
T PRK01156 560 LEDLDSKRTSWLNALAVISLI 580 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHh
Confidence 666666666666655554444
No 63
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=73.26 E-value=48 Score=34.96 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh---hhhHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 147 LQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK---NESEIAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 147 ~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~---~d~ei~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
..++++.+++.+.........+..++.+.+--+..++++.+.+.+. ++++|-+|.-.++...+.|..++.+-..
T Consensus 463 ~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k 539 (775)
T PF10174_consen 463 RQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK 539 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3456667777777777777777777777777777777777766443 4999999999999999999998877655
No 64
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=72.95 E-value=20 Score=29.43 Aligned_cols=64 Identities=8% Similarity=0.185 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
+..+..|-..||.+..++.-+...-........+.. ++.........+++.+..+.....++++
T Consensus 46 l~~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~-------~~~~l~~~i~~Le~~l~~L~~~~~~l~~ 109 (134)
T cd04779 46 LQLIEHLKGQRLSLAEIKDQLEEVQRSDKEQREVAQ-------EVQLVCDQIDGLEHRLKQLKPIASQTDR 109 (134)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhhccccchHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788999999877655443322222332323 3333333444455555555555555555
No 65
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=72.79 E-value=44 Score=33.09 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 110 FNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 110 fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
|++-..+.+.+= =.++.+++ ..+.............++++.++++++...+.++.++-.+|..-.|.|.+|..++...
T Consensus 4 f~SVk~Avs~FG-~~~~~k~~-~~~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~ 81 (522)
T PF05701_consen 4 FESVKEAVSLFG-GSIDWKKH-QSLERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKA 81 (522)
T ss_pred ChHHHHHHHHcC-CccccccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 22355544 2234455555666678889999999999999999999999999999999999988764
No 66
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=72.77 E-value=82 Score=29.31 Aligned_cols=71 Identities=8% Similarity=0.197 Sum_probs=43.3
Q ss_pred HHHHHH-HHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHH-hHHhHHHHHHHHHHHHHH
Q 037795 87 YMLTFA-NVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQS-IKEKHEQLQEQLLEYECH 157 (227)
Q Consensus 87 lm~tF~-~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~-lK~~~~~~~~~~k~le~~ 157 (227)
=+..|+ .+++.|+....+.....+.++...+..+.-..|+......-|.+|.. +++...++...-..++.+
T Consensus 27 ~~a~~s~~iL~~v~~~d~~~vg~~L~~L~~~~~~~dp~~~~~~~~~~~l~klf~k~~~~~~~~~~ky~sv~~q 99 (333)
T PF05816_consen 27 KIAQFSDRILDRVRNKDSGEVGELLNELRKEMDELDPSELKDEKKKGFLGKLFGKAKNSLERYFAKYQSVQSQ 99 (333)
T ss_pred HHHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhCChhhhhhhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 345676 78888999988888888888888888776666543323344444433 333333333333333333
No 67
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=72.65 E-value=33 Score=28.64 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=15.6
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITV 170 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~ 170 (227)
+-..+....++..++..+++.+.+...+...++.
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESELEKLKE 116 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444454444444444444333
No 68
>PRK09039 hypothetical protein; Validated
Probab=71.61 E-value=57 Score=30.68 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=11.9
Q ss_pred hhHHHhhhhhHHHH----HHHHHHHHHhH
Q 037795 194 ESEIAASKSKVDVG----NENIQNAQLDF 218 (227)
Q Consensus 194 d~ei~~Lks~~~~~----~e~~~~ae~eF 218 (227)
...|..|+...+++ .+++...+.+|
T Consensus 171 ~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 171 QAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44455555555444 23344445555
No 69
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=71.33 E-value=95 Score=34.06 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=20.2
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhH
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDF 218 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF 218 (227)
...|-++|++++.++..|.+.+.++
T Consensus 364 ~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 364 ENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888888888888877
No 70
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=71.13 E-value=47 Score=32.71 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=28.3
Q ss_pred HhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 139 SIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 139 ~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
..++.+.+++.+++.++..|...+.++......++++++.|..+...+..+
T Consensus 56 ~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 56 EQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555555544444
No 71
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=71.02 E-value=1.2e+02 Score=33.02 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=11.3
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhH
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDF 218 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF 218 (227)
+.+|..+..+...+.+.++.++...
T Consensus 890 ~~~l~~~~~~~~~~~~~~~~~~~~~ 914 (1163)
T COG1196 890 EEELRELESELAELKEEIEKLRERL 914 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 72
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=70.76 E-value=49 Score=31.01 Aligned_cols=74 Identities=19% Similarity=0.252 Sum_probs=35.3
Q ss_pred HHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh---hhhHHHhhhhhHHHHHHHHHHH
Q 037795 141 KEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK---NESEIAASKSKVDVGNENIQNA 214 (227)
Q Consensus 141 K~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~---~d~ei~~Lks~~~~~~e~~~~a 214 (227)
|+....+.+.-++....-..+-.|++.+--.+|.+--++.++++.++-+..+ +..++.++|-.-+.+..++..+
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~L 159 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDEL 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444445555555555555555555555555555544222 2444444444444444433333
No 73
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=70.68 E-value=16 Score=32.40 Aligned_cols=83 Identities=22% Similarity=0.383 Sum_probs=47.4
Q ss_pred cccCCCchhhHHHHHHHHHHHHhCCCchh--------------hhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhh
Q 037795 100 KLQVSDPTSIFNGMFEALLNLESHGFDVK--------------TVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQ 165 (227)
Q Consensus 100 ~l~idD~~s~fe~~~~tl~~LE~~GFdV~--------------~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~ 165 (227)
.+.+--|...|+..+..|. +.| .|. .+..||+.|-..+++..+++++-+..+. +.+.+.++
T Consensus 97 ~ltiRVP~~~~~~~l~~l~---~~g-~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d-~l~ie~~L 171 (262)
T PF14257_consen 97 SLTIRVPADKFDSFLDELS---ELG-KVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVED-LLEIEREL 171 (262)
T ss_pred EEEEEECHHHHHHHHHHHh---ccC-ceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHH
Confidence 4555667777877776666 557 443 3556666666666665555553332222 44555566
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH
Q 037795 166 SKITVELDHVVKEIKMLEESKA 187 (227)
Q Consensus 166 skle~~l~e~er~I~eLe~~~~ 187 (227)
+++..+|+.++..+..|.++-.
T Consensus 172 ~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 172 SRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 6666665555555555555433
No 74
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=70.65 E-value=33 Score=34.84 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=35.9
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh---hhhHHHhhhhhHHHHHHHHHHHH
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK---NESEIAASKSKVDVGNENIQNAQ 215 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~---~d~ei~~Lks~~~~~~e~~~~ae 215 (227)
+.....++.++.+.+..+..+.+.+.......+++....|.+++-+...++.. ..-++.+|+.+...+-..++.++
T Consensus 111 ~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44444445555555555555554444444555555555555555554444332 13344444444444444444443
No 75
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=70.00 E-value=70 Score=31.19 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=10.1
Q ss_pred hhhhhhhhhhhhhHHHHHHHH
Q 037795 160 EQTSEQSKITVELDHVVKEIK 180 (227)
Q Consensus 160 e~~~e~skle~~l~e~er~I~ 180 (227)
-|..|...|+++|..+|.++.
T Consensus 273 lHq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 273 LHQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 344455555555544444444
No 76
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.34 E-value=81 Score=31.52 Aligned_cols=71 Identities=20% Similarity=0.181 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 150 QLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 150 ~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
.+...+..+.....++..+...=.++...|.+|+.....++..-.+.-.+.=.....+++.+.+.+.+|..
T Consensus 109 ~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~ 179 (560)
T PF06160_consen 109 QLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSE 179 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333444443333333332222223333344444444444444443
No 77
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=69.31 E-value=67 Score=26.89 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=31.1
Q ss_pred CCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 037795 124 GFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKA 187 (227)
Q Consensus 124 GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~ 187 (227)
|..|..+-+-=.+|-.+......+..++...++.+.....++.+++...+...+.+.+|+.+.+
T Consensus 73 ~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~ 136 (177)
T PF13870_consen 73 GKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444444444444444444444444444444555555555555555555555555444433
No 78
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=69.23 E-value=1e+02 Score=32.35 Aligned_cols=15 Identities=13% Similarity=-0.104 Sum_probs=8.3
Q ss_pred HHHHHHHhCCCchhh
Q 037795 115 EALLNLESHGFDVKT 129 (227)
Q Consensus 115 ~tl~~LE~~GFdV~~ 129 (227)
.+|.--+..|++-..
T Consensus 484 ~a~~iA~~~Glp~~i 498 (771)
T TIGR01069 484 YAFEIAQRYGIPHFI 498 (771)
T ss_pred HHHHHHHHhCcCHHH
Confidence 455555666666443
No 79
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=69.22 E-value=48 Score=28.67 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhcccC
Q 037795 88 MLTFANVVEQTSKLQV 103 (227)
Q Consensus 88 m~tF~~l~e~v~~l~i 103 (227)
-.+|-.|+.+|.=-|.
T Consensus 65 ~~~F~ELIRQVTi~C~ 80 (189)
T PF10211_consen 65 SQCFDELIRQVTIDCP 80 (189)
T ss_pred HHHHHHHHHHHHhCcH
Confidence 3466777777764443
No 80
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=69.09 E-value=45 Score=27.99 Aligned_cols=85 Identities=14% Similarity=0.230 Sum_probs=55.3
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHH-------------HHHHHHHHHHHHHHhhhhhhHH
Q 037795 131 HSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHV-------------VKEIKMLEESKAKLTSKNESEI 197 (227)
Q Consensus 131 ~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~-------------er~I~eLe~~~~~~~~~~d~ei 197 (227)
|.+||+.-.+-.+.+.+..+.+..+.++........-++ .+|+= --....++.++...++.-+++|
T Consensus 19 Qq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~Eie-L~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i 97 (131)
T KOG1760|consen 19 QQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIE-LLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEI 97 (131)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHh-hcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHH
Confidence 677888777777777777777777777666554433221 11111 0122345555555666669999
Q ss_pred HhhhhhHHHHHHHHHHHHH
Q 037795 198 AASKSKVDVGNENIQNAQL 216 (227)
Q Consensus 198 ~~Lks~~~~~~e~~~~ae~ 216 (227)
..|.+.++.|.-.++..+.
T Consensus 98 ~~les~~e~I~~~m~~LK~ 116 (131)
T KOG1760|consen 98 EELESELESISARMDELKK 116 (131)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877664
No 81
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=68.96 E-value=1.5e+02 Score=33.07 Aligned_cols=66 Identities=12% Similarity=0.181 Sum_probs=38.0
Q ss_pred CCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 124 GFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 124 GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
+|+-..++.+..+++.-+.....+..+...++..+.....+..++++.+.++++.+.+++.++..+
T Consensus 258 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 258 RYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555555555555666666666666665555555555544
No 82
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=68.39 E-value=73 Score=34.74 Aligned_cols=92 Identities=15% Similarity=0.232 Sum_probs=63.8
Q ss_pred HHHHhCCCchhhh---HHHHHH----HHHhHHhHHHHHHHHHHHHHH---HhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 037795 118 LNLESHGFDVKTV---HSCLSE----MQSIKEKHEQLQEQLLEYECH---ILEQTSEQSKITVELDHVVKEIKMLEESKA 187 (227)
Q Consensus 118 ~~LE~~GFdV~~l---~sRL~k----LL~lK~~~~~~~~~~k~le~~---i~e~~~e~skle~~l~e~er~I~eLe~~~~ 187 (227)
.+|...|=|...+ +.+|.. |-.++..+..+.+..+-++.. +...+.++..++..+.+.+..+.++++++.
T Consensus 761 ~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 840 (1201)
T PF12128_consen 761 QELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELN 840 (1201)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999998554 444443 555888888887777776665 556777888888999999999999998888
Q ss_pred HHhhhhhhHHHhhhhhHHHHHH
Q 037795 188 KLTSKNESEIAASKSKVDVGNE 209 (227)
Q Consensus 188 ~~~~~~d~ei~~Lks~~~~~~e 209 (227)
.....-...+.++......+++
T Consensus 841 ~~~~~~~~~~~~le~~~~~~~~ 862 (1201)
T PF12128_consen 841 QLQKEVKQRRKELEEELKALEE 862 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7665544444444333333333
No 83
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.87 E-value=7.8 Score=39.25 Aligned_cols=108 Identities=14% Similarity=0.096 Sum_probs=92.5
Q ss_pred CCCCCccccCCchhhhhHHHHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhH
Q 037795 65 QKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKH 144 (227)
Q Consensus 65 Q~PHF~pL~~~~e~~REg~A~Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~ 144 (227)
-.|||-|=++..-..||-.-.|||-+=.+.|-+|+.|.-|--+-+.+-|.+- .+--++...+|+.-
T Consensus 29 ngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKF--------------isATdTirkmk~~f 94 (636)
T KOG2346|consen 29 NGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKF--------------ISATDTIRKMKSNF 94 (636)
T ss_pred CCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchh--------------hhcchHHHHHHhhh
Confidence 4799999999999999999999999999999999999888777777776653 33457788899999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 037795 145 EQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESK 186 (227)
Q Consensus 145 ~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~ 186 (227)
.++.++|+++...|...++-.-++...+-+.--.|..|.+--
T Consensus 95 ~~me~eMd~L~~~ms~i~~~s~~l~g~L~ekre~I~kLg~~~ 136 (636)
T KOG2346|consen 95 FGMEQEMDGLEEVMSSIQSKSDGLAGSLFEKRELIKKLGQRP 136 (636)
T ss_pred hhhcchhhhHHHHHHHHhhhhccccchhHHhHHHHHHhcCCc
Confidence 999999999999999888888888888888888888776543
No 84
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=67.83 E-value=56 Score=29.49 Aligned_cols=85 Identities=16% Similarity=0.330 Sum_probs=36.2
Q ss_pred hhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHH
Q 037795 127 VKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDV 206 (227)
Q Consensus 127 V~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~ 206 (227)
+..+..-|.+|..+++. .+.+.+...++++.+... +++++.+++.-.+..|+.++. ++.+++...+.++.+
T Consensus 113 I~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~----~~~~~~~~~~~~~~kL~~el~----~~~~~Le~~~~~~~a 183 (216)
T KOG1962|consen 113 IRRLHTLLRELATLRAN-EKAMKENEALKKQLENSS----KLEEENDKLKADLEKLETELE----KKQKKLEKAQKKVDA 183 (216)
T ss_pred HHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhccc----chhhhHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 33344444445555554 344445555555433322 244444444333333333221 123344444444444
Q ss_pred HHHHHHHHHHhHHH
Q 037795 207 GNENIQNAQLDFES 220 (227)
Q Consensus 207 ~~e~~~~ae~eF~s 220 (227)
...+.++-.+|+..
T Consensus 184 l~Kq~e~~~~Eydr 197 (216)
T KOG1962|consen 184 LKKQSEGLQDEYDR 197 (216)
T ss_pred HHHHHHHcccHHHH
Confidence 44444444444443
No 85
>PRK01156 chromosome segregation protein; Provisional
Probab=67.45 E-value=1.6e+02 Score=30.68 Aligned_cols=18 Identities=0% Similarity=0.041 Sum_probs=9.1
Q ss_pred HhCCCchhhhHHHHHHHH
Q 037795 121 ESHGFDVKTVHSCLSEMQ 138 (227)
Q Consensus 121 E~~GFdV~~l~sRL~kLL 138 (227)
+.-++++..+..++.++.
T Consensus 597 ~~l~~~l~~le~~~~~~~ 614 (895)
T PRK01156 597 NDLESRLQEIEIGFPDDK 614 (895)
T ss_pred HHHHhhHHHHHHHHhhhh
Confidence 333456666665544444
No 86
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=67.37 E-value=59 Score=25.57 Aligned_cols=74 Identities=8% Similarity=0.148 Sum_probs=45.8
Q ss_pred HHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh--hhhhHHHhhhhhHHHHHHHHHHHHHhHHHhHhhhC
Q 037795 153 EYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS--KNESEIAASKSKVDVGNENIQNAQLDFESVAVCLG 226 (227)
Q Consensus 153 ~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~--~~d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa~~ 226 (227)
.+.+++.+...+.-.+...-.++-..|.+|.++...... +...+|.++++++...-....-++-=|+.+..|+|
T Consensus 14 ~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q~lI~gSg 89 (106)
T PF05837_consen 14 SLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMKNVFQALIVGSG 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333333334444444444444445555444333333 23678888888888888888889999999999988
No 87
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=67.04 E-value=72 Score=34.95 Aligned_cols=69 Identities=23% Similarity=0.302 Sum_probs=47.0
Q ss_pred HHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh---hhhHHHhhhhhHHHHHHHHHHHHHhHHHhHh
Q 037795 155 ECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK---NESEIAASKSKVDVGNENIQNAQLDFESVAV 223 (227)
Q Consensus 155 e~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~---~d~ei~~Lks~~~~~~e~~~~ae~eF~svaa 223 (227)
+.++.+.+.+..++++.+++.+.+|.+.+.+.+.++.+ ..+.|.+++-++++-.++|.+++..++....
T Consensus 280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~r 351 (1074)
T KOG0250|consen 280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRR 351 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 33344445555666666666666666666666666633 3778888888888888888888887776654
No 88
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.66 E-value=43 Score=37.05 Aligned_cols=28 Identities=7% Similarity=0.002 Sum_probs=17.7
Q ss_pred hhhhhhhhcccCCCCCCCccccCCchhh
Q 037795 52 RAIEPMGVFQKMPQKPHFNLLDGSKDMY 79 (227)
Q Consensus 52 ~~~EsmeVFk~vPQ~PHF~pL~~~~e~~ 79 (227)
..+|+.-.-|=.-|.||=-++.+|-|++
T Consensus 232 GEVE~IA~MKPk~~~e~d~GmLEYLEDI 259 (1293)
T KOG0996|consen 232 GEVEQIAMMKPKAQTENDEGMLEYLEDI 259 (1293)
T ss_pred hhHHHHHhcCCCCCCCCcchHHHHHHHH
Confidence 3455555555555888877777766653
No 89
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=66.42 E-value=78 Score=31.39 Aligned_cols=85 Identities=9% Similarity=0.150 Sum_probs=46.7
Q ss_pred HHHHHHhHHhHHHHHHHHHHHH--------------HHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHh
Q 037795 134 LSEMQSIKEKHEQLQEQLLEYE--------------CHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAA 199 (227)
Q Consensus 134 L~kLL~lK~~~~~~~~~~k~le--------------~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~ 199 (227)
=.+|..++..+....++..... +++.+++.++..+++.++...-.-.+-+++...+....+.++..
T Consensus 136 k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~ 215 (522)
T PF05701_consen 136 KQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEE 215 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666665555544443 33455555555555555554443344444333333344666666
Q ss_pred hhhhHHHHHHHHHHHHHhH
Q 037795 200 SKSKVDVGNENIQNAQLDF 218 (227)
Q Consensus 200 Lks~~~~~~e~~~~ae~eF 218 (227)
.+..+..+++.+...+.++
T Consensus 216 ~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 216 WEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776666
No 90
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=66.18 E-value=1.4e+02 Score=29.73 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=14.5
Q ss_pred hCCCch---hhhHHHHHHHHHhHHhHH
Q 037795 122 SHGFDV---KTVHSCLSEMQSIKEKHE 145 (227)
Q Consensus 122 ~~GFdV---~~l~sRL~kLL~lK~~~~ 145 (227)
...||- ..++.||..+-.++..+.
T Consensus 295 ~l~~dp~~L~ele~RL~~l~~LkrKyg 321 (563)
T TIGR00634 295 ELEFDPERLNEIEERLAQIKRLKRKYG 321 (563)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 345555 556667776666666554
No 91
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=66.05 E-value=72 Score=26.04 Aligned_cols=75 Identities=19% Similarity=0.297 Sum_probs=48.1
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhh---hhhhhhHHHHHHHHHHHHHHHHHhh---hhhhHHHhhhhhHHHHH
Q 037795 135 SEMQSIKEKHEQLQEQLLEYECHILEQTSEQS---KITVELDHVVKEIKMLEESKAKLTS---KNESEIAASKSKVDVGN 208 (227)
Q Consensus 135 ~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~s---kle~~l~e~er~I~eLe~~~~~~~~---~~d~ei~~Lks~~~~~~ 208 (227)
.++-.+|+...++..+++.+...|...+.+.. .....+..++..+.+|+.....+-+ +|.-++-.|+.++..+.
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 45777888888888888888888777666654 3445556666667777666555322 34555666665555444
Q ss_pred H
Q 037795 209 E 209 (227)
Q Consensus 209 e 209 (227)
+
T Consensus 110 ~ 110 (120)
T PF12325_consen 110 E 110 (120)
T ss_pred H
Confidence 3
No 92
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=65.81 E-value=63 Score=27.46 Aligned_cols=54 Identities=15% Similarity=0.037 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhh-HHHHHHHHHhH
Q 037795 88 MLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTV-HSCLSEMQSIK 141 (227)
Q Consensus 88 m~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l-~sRL~kLL~lK 141 (227)
+..|+.+++.+..+.-+........+..+|.+.-..--.|+.. ..|-..+..+.
T Consensus 84 l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~ 138 (236)
T PF09325_consen 84 LSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQ 138 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555443333333333444444443333344332 34444444433
No 93
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=65.16 E-value=1.1e+02 Score=27.62 Aligned_cols=134 Identities=12% Similarity=0.157 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHH-HHHHHHHHhhhhhh
Q 037795 86 GYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQ-LLEYECHILEQTSE 164 (227)
Q Consensus 86 Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~-~k~le~~i~e~~~e 164 (227)
|++-++.-.+++|..-.+.|+..+|+....-+.+|+.| ++-+.....+|..=+..-+..... ...+---..+....
T Consensus 1 ~~~~~~~k~~~e~~~~~~ke~D~~Fe~~k~~l~~l~~~---Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l~~ee~t~ 77 (218)
T cd07663 1 GFFKNMVKSADEVLFSGVKEVDEFFEQEKTFLVNYYNR---IKDSCAKADKMTRSHKNVADDYIHISAALNSVAAEEPTV 77 (218)
T ss_pred CHHHHHHHhHHHHHHhccccchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccch
Confidence 56667788899999999999999999999999999875 666666666666544433332222 11111001111112
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH-------------------------------hhhh-hhHHHh---hhhhHHHHHH
Q 037795 165 QSKITVELDHVVKEIKMLEESKAKL-------------------------------TSKN-ESEIAA---SKSKVDVGNE 209 (227)
Q Consensus 165 ~skle~~l~e~er~I~eLe~~~~~~-------------------------------~~~~-d~ei~~---Lks~~~~~~e 209 (227)
+++.=..+-+..-+|..++...+.. ..+. .+.+.+ -+.++..++.
T Consensus 78 L~kals~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~ral~~~e~A~~~L~KaR~k~kev~~aE~ 157 (218)
T cd07663 78 IKKYLLKVAELFEKLRKVEDRVASDQDLKLTELLRYYMLNIEAAKDLLYRRARALADYENSNKALDKARLKSKDVKQAEA 157 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3333344445555555555443330 0000 111111 1446677888
Q ss_pred HHHHHHHhHHHhH
Q 037795 210 NIQNAQLDFESVA 222 (227)
Q Consensus 210 ~~~~ae~eF~sva 222 (227)
..+.++.+|+.|-
T Consensus 158 ~~~ea~~~Fe~IS 170 (218)
T cd07663 158 HQQECCQKFEKLS 170 (218)
T ss_pred HHHHHHHHHHHHH
Confidence 8888999999874
No 94
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=64.65 E-value=68 Score=30.70 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=40.6
Q ss_pred HhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh--hhHHHhhhhhHHHHHHHHHHHHH
Q 037795 139 SIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN--ESEIAASKSKVDVGNENIQNAQL 216 (227)
Q Consensus 139 ~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~--d~ei~~Lks~~~~~~e~~~~ae~ 216 (227)
..++.....+++.+.+..-+.+.+.++.+|.+++..+...|.+ --..+ .+=+.+.|..+..+.++|..|..
T Consensus 277 ~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee-------rg~~mtD~sPlv~IKqAl~kLk~EI~qMdv 349 (359)
T PF10498_consen 277 SAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE-------RGSSMTDGSPLVKIKQALTKLKQEIKQMDV 349 (359)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 3455555555555555555666666666666665555444433 11122 56666777777777777776654
Q ss_pred h
Q 037795 217 D 217 (227)
Q Consensus 217 e 217 (227)
+
T Consensus 350 r 350 (359)
T PF10498_consen 350 R 350 (359)
T ss_pred h
Confidence 3
No 95
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=64.49 E-value=1.1e+02 Score=27.81 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhh
Q 037795 88 MLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQ 165 (227)
Q Consensus 88 m~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~ 165 (227)
=..+.++=.+|+.+.. ....++..++...+.-..++|-+.+..=-.++-.+|.+...+.+++..+.+.+...+.+.
T Consensus 51 ~~e~e~le~qv~~~e~--ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 51 EIELEDLENQVSQLES--EIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455455544332 344555566666555566666554444333344444444444444444444333333333
No 96
>PRK02224 chromosome segregation protein; Provisional
Probab=64.34 E-value=1.4e+02 Score=30.81 Aligned_cols=22 Identities=18% Similarity=0.055 Sum_probs=12.2
Q ss_pred hcc---cCCCCCCCccccCCchhhhh
Q 037795 59 VFQ---KMPQKPHFNLLDGSKDMYLE 81 (227)
Q Consensus 59 VFk---~vPQ~PHF~pL~~~~e~~RE 81 (227)
+|. .|||.= |..+.+-.|.=|.
T Consensus 128 ~f~~~~~i~Qge-~~~~l~~~p~~R~ 152 (880)
T PRK02224 128 AFVNCAYVRQGE-VNKLINATPSDRQ 152 (880)
T ss_pred HhcceeEeeccC-hHHHHcCCHHHHH
Confidence 555 357764 6666665544333
No 97
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=64.18 E-value=66 Score=24.92 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=24.3
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
+..+.+|+.-|..+++++...|..|.++
T Consensus 72 e~~V~~LE~~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 72 EEQVTELEQTVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6688889999999999999999988753
No 98
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=64.07 E-value=90 Score=27.60 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=35.6
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
+.+.+..++.+...++.++...+....+++..++..+..|.+|+++....
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777777777777777777777777777776664
No 99
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=63.86 E-value=79 Score=25.73 Aligned_cols=52 Identities=8% Similarity=0.102 Sum_probs=39.7
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
|=..|-++..+..+++.|+..............+.+.+++++|.++-+.+..
T Consensus 25 lE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 25 LEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888888888888888877777777777777878888888777766555
No 100
>PRK10884 SH3 domain-containing protein; Provisional
Probab=63.79 E-value=53 Score=29.05 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 037795 143 KHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESK 186 (227)
Q Consensus 143 ~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~ 186 (227)
..+.+.+.....+..+.+...+.+++.+++.....++..|+.+.
T Consensus 119 ~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 119 RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555444444444433
No 101
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=63.53 E-value=1.3e+02 Score=30.06 Aligned_cols=49 Identities=12% Similarity=0.254 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcccC---CCchhhHHHHHHHHHHHHhCCCchhh--hHHHHHH
Q 037795 88 MLTFANVVEQTSKLQV---SDPTSIFNGMFEALLNLESHGFDVKT--VHSCLSE 136 (227)
Q Consensus 88 m~tF~~l~e~v~~l~i---dD~~s~fe~~~~tl~~LE~~GFdV~~--l~sRL~k 136 (227)
+..+...++.|..+-. ++-...++.+-....+|.+.||...+ +-.+|+.
T Consensus 203 ~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~ 256 (560)
T PF06160_consen 203 TDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQ 256 (560)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Confidence 4455566666665543 47889999999999999999999988 4444444
No 102
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=63.29 E-value=83 Score=32.04 Aligned_cols=100 Identities=10% Similarity=0.192 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhC--CCchhhhHHHHHHHH-HhHHhHHHHHHHHHHHHHHH
Q 037795 82 GLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESH--GFDVKTVHSCLSEMQ-SIKEKHEQLQEQLLEYECHI 158 (227)
Q Consensus 82 g~A~Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~--GFdV~~l~sRL~kLL-~lK~~~~~~~~~~k~le~~i 158 (227)
-+++.|-..|..|+.-|..|.--+ ...|..+.+-|.+.++- |+|.. ..+..++| .-...++-+...+|...+++
T Consensus 3 ~~~lnm~~~f~~l~r~~~~l~~g~-e~ef~rl~k~fed~~ek~~r~~ae--~~~~~~~L~Ka~tk~~~ldvklkha~~~v 79 (604)
T KOG3564|consen 3 TMMLNMRNLFEQLVRDIEILGEGN-EDEFIRLRKDFEDFEEKWKRTDAE--LGKYKDLLAKAETKRSALDVKLKHARNQV 79 (604)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhhhhccchHHHHHHHH
Confidence 367888889999999999988877 88898888888888775 55432 22233322 22223333333334444444
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 159 LEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 159 ~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
...-.+..+++++.+.+|..|..+..
T Consensus 80 da~ik~rr~ae~d~~~~E~~i~~i~d 105 (604)
T KOG3564|consen 80 DAEIKRRRRAEADCEKLETQIQLIKD 105 (604)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44445566788888888888876665
No 103
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=63.21 E-value=1.1e+02 Score=29.83 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=72.4
Q ss_pred HHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHH----HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 037795 94 VVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSE----MQSIKEKHEQLQEQLLEYECHILEQTSEQSKIT 169 (227)
Q Consensus 94 l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~k----LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle 169 (227)
|-.+|+|+--.| +.+.+.=.-+|+|-.+-+-|+..=.+ |+..++=-.+..++...+|.-+..++-|+.+++
T Consensus 73 lq~kirk~~e~~-----eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lq 147 (401)
T PF06785_consen 73 LQTKIRKITEKD-----EGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQ 147 (401)
T ss_pred HHHHHHHHHhcc-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 345677765555 56677777889999998888876444 556666666666666667776777777777776
Q ss_pred hhhHHHHHHHHH-------HHHHHHHH-------hhh--------------hhhHHHhhhhhHHHHHHHHHH
Q 037795 170 VELDHVVKEIKM-------LEESKAKL-------TSK--------------NESEIAASKSKVDVGNENIQN 213 (227)
Q Consensus 170 ~~l~e~er~I~e-------Le~~~~~~-------~~~--------------~d~ei~~Lks~~~~~~e~~~~ 213 (227)
..+++.-+.+-| |.|+++.. .+. .-.-|+.|++.|..+..++.+
T Consensus 148 lqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Eirn 219 (401)
T PF06785_consen 148 LQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRN 219 (401)
T ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555543 33333331 110 155677777777776666554
No 104
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=62.96 E-value=90 Score=26.10 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=48.8
Q ss_pred chhhhHHHHHH----HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 037795 126 DVKTVHSCLSE----MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLT 190 (227)
Q Consensus 126 dV~~l~sRL~k----LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~ 190 (227)
+++.+..+|.+ |+.+|...+.....+....+++.....+...+...+.+.+..+..+..++...+
T Consensus 50 en~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k 118 (177)
T PF13870_consen 50 ENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVK 118 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544 888888888888888888888888888888888888888777777777666643
No 105
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=62.80 E-value=97 Score=31.28 Aligned_cols=9 Identities=11% Similarity=-0.363 Sum_probs=5.4
Q ss_pred CCccccCCc
Q 037795 68 HFNLLDGSK 76 (227)
Q Consensus 68 HF~pL~~~~ 76 (227)
+|++++-|.
T Consensus 146 ~~~~~FfFD 154 (650)
T TIGR03185 146 ELADLFFFD 154 (650)
T ss_pred hHHHHhccc
Confidence 566666555
No 106
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=62.68 E-value=1.9e+02 Score=29.61 Aligned_cols=75 Identities=21% Similarity=0.247 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHhCCCchhhhHHHHHHH----HHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHH
Q 037795 107 TSIFNGMFEALLNLESHGFDVKTVHSCLSEM----QSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKML 182 (227)
Q Consensus 107 ~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kL----L~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eL 182 (227)
....+.+++....|++- |..++.++..| -..+....++..+.+++.......+.+...+.....+....|.+|
T Consensus 149 qkE~eeL~~~~~~Le~e---~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~L 225 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEE---VEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIREL 225 (546)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666663 45566666653 223334444444444443333333333333333333333344444
Q ss_pred HH
Q 037795 183 EE 184 (227)
Q Consensus 183 e~ 184 (227)
++
T Consensus 226 Ee 227 (546)
T PF07888_consen 226 EE 227 (546)
T ss_pred HH
Confidence 33
No 107
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=62.54 E-value=93 Score=26.14 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 149 EQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 149 ~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
.+...++.++...+.++.+++.+++.+-+.-..|.+
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555544444433333
No 108
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=62.54 E-value=89 Score=25.90 Aligned_cols=9 Identities=44% Similarity=0.844 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 037795 177 KEIKMLEES 185 (227)
Q Consensus 177 r~I~eLe~~ 185 (227)
|+|..|+++
T Consensus 80 rriq~LEee 88 (143)
T PF12718_consen 80 RRIQLLEEE 88 (143)
T ss_pred hhHHHHHHH
Confidence 333333333
No 109
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=62.38 E-value=1.1e+02 Score=26.94 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=13.9
Q ss_pred HHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 157 HILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 157 ~i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
++...+..+.+.+...+..+.+|.+|+.++..
T Consensus 121 kl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~ 152 (237)
T PF00261_consen 121 KLKVLEQELERAEERAEAAESKIKELEEELKS 152 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 33334444444444444444444444444333
No 110
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=61.87 E-value=94 Score=25.92 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=5.6
Q ss_pred HHhhhhhHHHHHHHH
Q 037795 197 IAASKSKVDVGNENI 211 (227)
Q Consensus 197 i~~Lks~~~~~~e~~ 211 (227)
+.+++.+.+.+.+.+
T Consensus 167 ~~~~~~~~~~l~~~~ 181 (191)
T PF04156_consen 167 LERLQENLQQLEEKI 181 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 111
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=61.84 E-value=1.2e+02 Score=27.26 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=44.8
Q ss_pred hhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhh-------hHHHHHHHHHHHHHHHHHhhhh---hhH
Q 037795 127 VKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVE-------LDHVVKEIKMLEESKAKLTSKN---ESE 196 (227)
Q Consensus 127 V~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~-------l~e~er~I~eLe~~~~~~~~~~---d~e 196 (227)
++.++..+..|-.+|++..+-.+..+..++.|.+-..++..|.++ |..+..-|..|+--...+++.. ...
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777766666666655555555555555444433 3333333333333322222221 344
Q ss_pred HHhhhhhHHHHHHHHHHHHHh
Q 037795 197 IAASKSKVDVGNENIQNAQLD 217 (227)
Q Consensus 197 i~~Lks~~~~~~e~~~~ae~e 217 (227)
|.++..+...+..++..++.+
T Consensus 83 i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 83 IQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 112
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=61.75 E-value=1.1e+02 Score=26.73 Aligned_cols=73 Identities=25% Similarity=0.317 Sum_probs=36.8
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHH--------HHHHHHHHHHhhhh---hhHHHhhhhhHH
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEI--------KMLEESKAKLTSKN---ESEIAASKSKVD 205 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I--------~eLe~~~~~~~~~~---d~ei~~Lks~~~ 205 (227)
+..+|....++++....++.++.+...++-++...+..+..-. .+|++++..+..++ +..|..|+..++
T Consensus 70 vr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 70 VRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555544443322 24555554443332 555555555444
Q ss_pred HHHH
Q 037795 206 VGNE 209 (227)
Q Consensus 206 ~~~e 209 (227)
..+.
T Consensus 150 L~~k 153 (194)
T PF15619_consen 150 LENK 153 (194)
T ss_pred HHhh
Confidence 4433
No 113
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=61.33 E-value=86 Score=25.33 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=20.5
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHH
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFE 219 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~ 219 (227)
+.=.++|+..+..+++.|...-.+|.
T Consensus 95 ~~l~~~L~~~~~e~eeeSe~lae~fl 120 (150)
T PF07200_consen 95 DALLARLQAAASEAEEESEELAEEFL 120 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-S-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77788999999999999988866664
No 114
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.25 E-value=36 Score=28.30 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=11.9
Q ss_pred HhHHhHHHHHHHHHHHHHHHhhhhhhhhh
Q 037795 139 SIKEKHEQLQEQLLEYECHILEQTSEQSK 167 (227)
Q Consensus 139 ~lK~~~~~~~~~~k~le~~i~e~~~e~sk 167 (227)
.+......+.+++..++..+...++++..
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~ 104 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELAS 104 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444333
No 115
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=61.07 E-value=86 Score=25.26 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=28.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhh---hhHHHhhhhhHHHHHHHHH
Q 037795 165 QSKITVELDHVVKEIKMLEESKAKLTSKN---ESEIAASKSKVDVGNENIQ 212 (227)
Q Consensus 165 ~skle~~l~e~er~I~eLe~~~~~~~~~~---d~ei~~Lks~~~~~~e~~~ 212 (227)
...++..+..+...|..|+....+++.+- ...|..+....+.+.+.|.
T Consensus 67 ~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~ 117 (132)
T PF10392_consen 67 IEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSD 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666665543 5566666666666666554
No 116
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=61.07 E-value=33 Score=26.86 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCchhhhHHHHHH
Q 037795 113 MFEALLNLESHGFDVKTVHSCLSE 136 (227)
Q Consensus 113 ~~~tl~~LE~~GFdV~~l~sRL~k 136 (227)
.+..+..|...||.++.++.-+..
T Consensus 45 ~l~~I~~lr~~G~sl~eI~~~l~~ 68 (116)
T cd04769 45 CLRFIKEARQLGFTLAELKAIFAG 68 (116)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhc
Confidence 345677788999999988865543
No 117
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=60.60 E-value=78 Score=24.62 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=20.3
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHHHhHH
Q 037795 193 NESEIAASKSKVDVGNENIQNAQLDFE 219 (227)
Q Consensus 193 ~d~ei~~Lks~~~~~~e~~~~ae~eF~ 219 (227)
+..+|.+|......+...+...+....
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888888888888888777666543
No 118
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.57 E-value=1.1e+02 Score=31.31 Aligned_cols=48 Identities=10% Similarity=0.225 Sum_probs=24.3
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKA 187 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~ 187 (227)
|+++--+.+..+.+++-+....+-.+.++..++.++|..|.-++.+.-
T Consensus 271 L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d 318 (581)
T KOG0995|consen 271 LQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKEND 318 (581)
T ss_pred HHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555445555555555555555444444444333
No 119
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=60.31 E-value=1.6e+02 Score=32.10 Aligned_cols=78 Identities=24% Similarity=0.295 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhC----CCchhhhHHHHHH----HHHhHHhHHHHHHHHHHHHHHHhhhhh----------hhhhhhhh
Q 037795 110 FNGMFEALLNLESH----GFDVKTVHSCLSE----MQSIKEKHEQLQEQLLEYECHILEQTS----------EQSKITVE 171 (227)
Q Consensus 110 fe~~~~tl~~LE~~----GFdV~~l~sRL~k----LL~lK~~~~~~~~~~k~le~~i~e~~~----------e~skle~~ 171 (227)
.+++-+.+.+||+. --||+.++..+.. |.+|..-+++.++++..++.+|-..+. |+++..+.
T Consensus 346 ~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ek 425 (1265)
T KOG0976|consen 346 AEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEK 425 (1265)
T ss_pred hcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHH
Confidence 44555556666654 3578888877765 555666666666666666665433322 24455555
Q ss_pred hHHHHHHHHHHHHHHH
Q 037795 172 LDHVVKEIKMLEESKA 187 (227)
Q Consensus 172 l~e~er~I~eLe~~~~ 187 (227)
+|.|-.+...+..|+.
T Consensus 426 ld~mgthl~mad~Q~s 441 (1265)
T KOG0976|consen 426 LDLMGTHLSMADYQLS 441 (1265)
T ss_pred HHHHhHHHHHHHHHHh
Confidence 5555555555554443
No 120
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.09 E-value=1e+02 Score=25.65 Aligned_cols=55 Identities=25% Similarity=0.447 Sum_probs=31.0
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhh--hhhhhhHHHHHHHHHHHHHHHHHhh
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQS--KITVELDHVVKEIKMLEESKAKLTS 191 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~s--kle~~l~e~er~I~eLe~~~~~~~~ 191 (227)
+-.++.....+..+.+.+..++....+..+ .+...+..++..|.+|+..+..+++
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555666655555555543 4555555566666666666555544
No 121
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=59.90 E-value=84 Score=29.15 Aligned_cols=53 Identities=28% Similarity=0.376 Sum_probs=28.0
Q ss_pred HhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 037795 139 SIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS 191 (227)
Q Consensus 139 ~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~ 191 (227)
.+|..+..+.+.+..+.+.-.+...++..++.+..+..-.|..|+-+.+++.+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE 184 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEE 184 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655555555444444445555555555554445555444444433
No 122
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=59.75 E-value=1.3e+02 Score=26.83 Aligned_cols=47 Identities=11% Similarity=0.288 Sum_probs=33.6
Q ss_pred HhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 037795 139 SIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEES 185 (227)
Q Consensus 139 ~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~ 185 (227)
.|...-.++.++..+++-.|.-.+...+++.+++-+..+.+.-+|+.
T Consensus 12 dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqa 58 (193)
T PF14662_consen 12 DLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQA 58 (193)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777777777777777777766653
No 123
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=59.73 E-value=1.9e+02 Score=29.50 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCchhhhHHHHHH-HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCLSE-MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEI 179 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL~k-LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I 179 (227)
-.++++|-.....+.-+.-+|.. -+.+|..+++...++..+...+.....+..+|..++..++.++
T Consensus 321 Drt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~l 387 (546)
T PF07888_consen 321 DRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHL 387 (546)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888888877 4567877777666666655433333334444444444444444
No 124
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=59.44 E-value=1.2e+02 Score=26.28 Aligned_cols=93 Identities=22% Similarity=0.313 Sum_probs=52.7
Q ss_pred CchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhh------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh------
Q 037795 125 FDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQ------TSEQSKITVELDHVVKEIKMLEESKAKLTSK------ 192 (227)
Q Consensus 125 FdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~------~~e~skle~~l~e~er~I~eLe~~~~~~~~~------ 192 (227)
|-=+..+.|-+++-.++.....+......++.++... +.++..+-+++.+++..+.+|+.++......
T Consensus 59 Fps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~ 138 (188)
T PF03962_consen 59 FPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIE 138 (188)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4444555555555556666666666666665554443 3345566677777777777777777754332
Q ss_pred -hhhHHHhhhhhHHHHHHHHHHHHHh
Q 037795 193 -NESEIAASKSKVDVGNENIQNAQLD 217 (227)
Q Consensus 193 -~d~ei~~Lks~~~~~~e~~~~ae~e 217 (227)
+..++...+..++..-..|-.++.-
T Consensus 139 ~~~~~~~~~~~~anrwTDNI~~l~~~ 164 (188)
T PF03962_consen 139 KLKEEIKIAKEAANRWTDNIFSLKSY 164 (188)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2444555555555555554444433
No 125
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=59.39 E-value=60 Score=22.86 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=36.7
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 037795 132 SCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEES 185 (227)
Q Consensus 132 sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~ 185 (227)
.|+..=.+-+..|.+....+..|+.++...+.+...+...+..+...+..|..+
T Consensus 9 rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 9 RRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444556667777777788888887777777777777766666666666543
No 126
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=59.21 E-value=56 Score=37.88 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=36.0
Q ss_pred HHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH---hhhhhhHHHhhhhhHHHHHHHHHHH
Q 037795 153 EYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL---TSKNESEIAASKSKVDVGNENIQNA 214 (227)
Q Consensus 153 ~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~---~~~~d~ei~~Lks~~~~~~e~~~~a 214 (227)
.+..++.+.....+++...+.++...|.+|++++..- +.+.++..+.|..+++.+.+.|++.
T Consensus 1080 ~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1080 QLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555566666666666666655542 3334666666666777776666655
No 127
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=59.17 E-value=34 Score=26.51 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCchhhhHHHHHH
Q 037795 113 MFEALLNLESHGFDVKTVHSCLSE 136 (227)
Q Consensus 113 ~~~tl~~LE~~GFdV~~l~sRL~k 136 (227)
.+..+..|...||.+..++.-+..
T Consensus 47 ~l~~I~~lr~~G~sl~~i~~l~~~ 70 (108)
T cd01107 47 RLNRIKYLRDLGFPLEEIKEILDA 70 (108)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhc
Confidence 345677888899998887765443
No 128
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=59.17 E-value=1.1e+02 Score=25.85 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=19.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHH
Q 037795 165 QSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVG 207 (227)
Q Consensus 165 ~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~ 207 (227)
++++..+...++.+|.++.. +.+.+|+.|+++.+..
T Consensus 115 K~~~r~e~~~~~~ki~e~~~-------ki~~ei~~lr~~iE~~ 150 (177)
T PF07798_consen 115 KGRIREEQAKQELKIQELNN-------KIDTEIANLRTEIESL 150 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 44455555555555555433 3466666666666543
No 129
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=59.14 E-value=32 Score=29.80 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=25.2
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 152 LEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 152 k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
..+..++...+.|...|.+-|.-++++..+|+++|+..
T Consensus 32 eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit 69 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGIT 69 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCc
Confidence 33444444444455567777788888888999988763
No 130
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.08 E-value=66 Score=33.11 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=41.2
Q ss_pred HHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh----------hhhhhHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 157 HILEQTSEQSKITVELDHVVKEIKMLEESKAKLT----------SKNESEIAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 157 ~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~----------~~~d~ei~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
+|+.-..++..|++.++-+.+...+-+.++.-++ .+.|+++..+.-..+.-++.|.+|+.+...
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkk 405 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKK 405 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555554444444333332 234999999999999999999999887653
No 131
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=59.03 E-value=1.1e+02 Score=32.79 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=28.7
Q ss_pred HhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHH
Q 037795 158 ILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQL 216 (227)
Q Consensus 158 i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~ 216 (227)
|+....|..++-..+.++|..+.+.+++ -|.|+.++|-+|+.+-...+.-++
T Consensus 464 ~e~q~~Enk~~~~~~~ekd~~l~~~kq~-------~d~e~~rik~ev~eal~~~k~~q~ 515 (861)
T PF15254_consen 464 IENQKEENKRLRKMFQEKDQELLENKQQ-------FDIETTRIKIEVEEALVNVKSLQF 515 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444555555555555555544443 277777777777766655554443
No 132
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=58.40 E-value=67 Score=29.43 Aligned_cols=32 Identities=16% Similarity=0.398 Sum_probs=18.5
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhh
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKI 168 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skl 168 (227)
+-.++.++..+.+.+..++.+|.+.+..+.+.
T Consensus 182 i~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 182 IAALRQRYNQLSNSIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666665555443
No 133
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.25 E-value=67 Score=29.82 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=38.0
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 037795 136 EMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN 193 (227)
Q Consensus 136 kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~ 193 (227)
+|-.+......++.++..+..+|.+.......++.++++....|.+|+.++..+++..
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666677777777766666666666666666666666666666655543
No 134
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=58.06 E-value=1.5e+02 Score=27.56 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=13.9
Q ss_pred CCCCCCCccccCCchhhhhHHHHHHHHHHHHHHHH
Q 037795 63 MPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQ 97 (227)
Q Consensus 63 vPQ~PHF~pL~~~~e~~REg~A~Glm~tF~~l~e~ 97 (227)
+=..|+|.| ....+-..|+|-+..|+.-+..
T Consensus 178 ~~~~p~F~~----e~v~~~S~Aa~~Lc~WV~A~~~ 208 (344)
T PF12777_consen 178 YLKNPDFNP----EKVRKASKAAGSLCKWVRAMVK 208 (344)
T ss_dssp TTTSTTSSH----HHHHHH-TTHHHHHHHHHHHHH
T ss_pred HhcCCCCCH----HHHHHHhhcchHHHHHHHHHHH
Confidence 334556655 2223333455555555544433
No 135
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=57.93 E-value=1.4e+02 Score=28.30 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=21.5
Q ss_pred hhhhhhh--hHHHHHHHHHHHHHHHHHhhh---hhhHHHh
Q 037795 165 QSKITVE--LDHVVKEIKMLEESKAKLTSK---NESEIAA 199 (227)
Q Consensus 165 ~skle~~--l~e~er~I~eLe~~~~~~~~~---~d~ei~~ 199 (227)
=.|+++. |+|-.+.|.+|+|-...++.. +|+.|-+
T Consensus 110 CHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQK 149 (305)
T PF15290_consen 110 CHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQK 149 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHH
Confidence 3455554 456668888888866666554 3555544
No 136
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=57.75 E-value=1e+02 Score=25.12 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHHHHHHhHHHhHhhhC
Q 037795 201 KSKVDVGNENIQNAQLDFESVAVCLG 226 (227)
Q Consensus 201 ks~~~~~~e~~~~ae~eF~svaaa~~ 226 (227)
..++..+...+.+.+.+..+++--+|
T Consensus 67 ~~~~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 67 KKEVEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444445555555555555544444
No 137
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.51 E-value=1.5e+02 Score=32.66 Aligned_cols=79 Identities=19% Similarity=0.147 Sum_probs=41.5
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh---hhhHHHhhhhhHHHHHHHHHHHHHhH
Q 037795 142 EKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK---NESEIAASKSKVDVGNENIQNAQLDF 218 (227)
Q Consensus 142 ~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~---~d~ei~~Lks~~~~~~e~~~~ae~eF 218 (227)
..++.+..+.++..++|.++.......+..+.+.+..+.++++++..+-.+ .|-|=.+|++..+++.+.+..++..-
T Consensus 418 ~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L 497 (1200)
T KOG0964|consen 418 KEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNL 497 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444455555555555555566666666666665554221 25555666666666666665555544
Q ss_pred HH
Q 037795 219 ES 220 (227)
Q Consensus 219 ~s 220 (227)
..
T Consensus 498 ~~ 499 (1200)
T KOG0964|consen 498 RA 499 (1200)
T ss_pred HH
Confidence 43
No 138
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=57.45 E-value=88 Score=32.74 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=7.4
Q ss_pred HHHHHHHhCCCch
Q 037795 115 EALLNLESHGFDV 127 (227)
Q Consensus 115 ~tl~~LE~~GFdV 127 (227)
.+|.-.+..||+-
T Consensus 489 ~a~~iA~~~Glp~ 501 (782)
T PRK00409 489 NAFEIAKRLGLPE 501 (782)
T ss_pred HHHHHHHHhCcCH
Confidence 4555556666653
No 139
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=57.17 E-value=33 Score=34.29 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=14.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 152 LEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 152 k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
++++++++..+.++..+.....+.+++|.+|+.
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEa 111 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQ 111 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 445555555444444333333344444444444
No 140
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=56.77 E-value=1.1e+02 Score=30.25 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=20.6
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
|+.-+..+..+..++...+.+...+..++...+.|..+...+|+.
T Consensus 173 l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~ 217 (420)
T COG4942 173 LAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNS 217 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444443
No 141
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=56.54 E-value=1e+02 Score=25.55 Aligned_cols=56 Identities=11% Similarity=0.236 Sum_probs=28.9
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh---hhHHHhhhhhHHHHHHHHHHHH
Q 037795 160 EQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN---ESEIAASKSKVDVGNENIQNAQ 215 (227)
Q Consensus 160 e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~---d~ei~~Lks~~~~~~e~~~~ae 215 (227)
....-+..|.+.|+.++.++.+..+-....+.+. -.++++...+++.++....+.+
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455666778888888877665322222221 3344444444444444444443
No 142
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.38 E-value=1.7e+02 Score=32.36 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=12.1
Q ss_pred hhhhhcccCCCCCCCccccCCchhhhhH
Q 037795 55 EPMGVFQKMPQKPHFNLLDGSKDMYLEG 82 (227)
Q Consensus 55 EsmeVFk~vPQ~PHF~pL~~~~e~~REg 82 (227)
++++|=|+| -|+|=+.++--.++|
T Consensus 629 ~~~d~AKkV----af~~~i~~rsVTl~G 652 (1174)
T KOG0933|consen 629 DSLDVAKKV----AFDPKIRTRSVTLEG 652 (1174)
T ss_pred cCHHHHHHh----hcccccccceeeecC
Confidence 455555555 355555554444433
No 143
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=56.32 E-value=90 Score=34.26 Aligned_cols=78 Identities=17% Similarity=0.306 Sum_probs=67.9
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH-hhhh--hhHHHhhhhhHHHHHHHHHH
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL-TSKN--ESEIAASKSKVDVGNENIQN 213 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~-~~~~--d~ei~~Lks~~~~~~e~~~~ 213 (227)
+..++.......++.++++.-|.+....++.+.+++-++-++..+++.++-.+ ++++ -..|+.++.+++..+..+..
T Consensus 420 ~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~ 499 (1200)
T KOG0964|consen 420 IEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRA 499 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999887766 3332 88899999999999888775
Q ss_pred H
Q 037795 214 A 214 (227)
Q Consensus 214 a 214 (227)
+
T Consensus 500 ~ 500 (1200)
T KOG0964|consen 500 T 500 (1200)
T ss_pred h
Confidence 4
No 144
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=56.24 E-value=77 Score=27.20 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 149 EQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 149 ~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
+....++..+...+....+++..+.+++.+|.+++.+...+
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 98 EQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555556666666777777777777666654
No 145
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=56.19 E-value=1.4e+02 Score=27.73 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 128 KTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 128 ~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
|.+|.|=+.|-..++++.++.++..+++.+= -.+..+..++++|...|...+--|-++.-
T Consensus 131 K~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n 190 (271)
T PF13805_consen 131 KSIRNREESLQPSRDRRRKLQDEIAKLKYKD-PQSPKLVVLEQELVRAEAENLVAEAQLSN 190 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4445555557778888888888888887641 12333444555555444444444444443
No 146
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=56.19 E-value=80 Score=24.83 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=7.9
Q ss_pred HHHhhhhhHHHHHHHHHHH
Q 037795 196 EIAASKSKVDVGNENIQNA 214 (227)
Q Consensus 196 ei~~Lks~~~~~~e~~~~a 214 (227)
+|+++..++..++..++.+
T Consensus 73 ~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 73 ELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 3344444444444444433
No 147
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=56.14 E-value=37 Score=27.93 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=17.8
Q ss_pred HHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 037795 157 HILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASK 201 (227)
Q Consensus 157 ~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lk 201 (227)
+|.+...+..++++. ++..|.++++........-..+|..|+
T Consensus 11 ki~~l~~~~~~i~~~---~~~~I~~i~~~~~~~~~~l~~~i~~l~ 52 (149)
T PF07352_consen 11 KIAELQREIARIEAE---ANDEIARIKEWYEAEIAPLQNRIEYLE 52 (149)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 334444444443333333344444444
No 148
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=55.74 E-value=2.3e+02 Score=31.88 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 037795 147 LQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEES 185 (227)
Q Consensus 147 ~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~ 185 (227)
++.+.+..++++.+.+..+.+++..+...++.+..+++.
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~ 530 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKK 530 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666655555555555443
No 149
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=55.70 E-value=1.5e+02 Score=26.37 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 150 QLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 150 ~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
+...+.+++.+..........-+++.|+.|.++=.+....+.....+|.++..+-+.+...+.+++.-|-.+
T Consensus 24 e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl 95 (207)
T PF05010_consen 24 EEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDL 95 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHH
Confidence 344444555555555555555566666666665444333333335666666666666666666666655443
No 150
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=55.63 E-value=46 Score=25.49 Aligned_cols=13 Identities=15% Similarity=0.457 Sum_probs=5.0
Q ss_pred HHHHHhHHhHHHH
Q 037795 135 SEMQSIKEKHEQL 147 (227)
Q Consensus 135 ~kLL~lK~~~~~~ 147 (227)
.+++.+-..+..+
T Consensus 29 d~i~~ld~~~r~l 41 (108)
T PF02403_consen 29 DEIIELDQERREL 41 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334433333333
No 151
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=55.23 E-value=1.9e+02 Score=31.70 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=10.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Q 037795 166 SKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 166 skle~~l~e~er~I~eLe~~~~~ 188 (227)
..+++.+...+..+..+++++..
T Consensus 681 ~~~~~~l~~l~~~l~~~~~e~~~ 703 (1201)
T PF12128_consen 681 EQIEEQLNELEEELKQLKQELEE 703 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 152
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=54.93 E-value=3.6 Score=31.48 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=47.7
Q ss_pred hhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 037795 127 VKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEES 185 (227)
Q Consensus 127 V~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~ 185 (227)
++..+.|+..=...++++.+..+....++..+.....+...+..++..+...+.+++++
T Consensus 29 lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~ 87 (92)
T PF03131_consen 29 LKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRK 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888889999999999999999998888888888888877776655555443
No 153
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=54.88 E-value=2.1e+02 Score=29.39 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 037795 147 LQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS 191 (227)
Q Consensus 147 ~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~ 191 (227)
+.++...+..++...+.+...+..+.+..-..|-+|++++..++.
T Consensus 20 lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~ 64 (617)
T PF15070_consen 20 LKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKN 64 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666666666666666666666666666666666543
No 154
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.81 E-value=2.6e+02 Score=28.84 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=26.3
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHH
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEI 179 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I 179 (227)
++..-......++++.+.|++++.|..+|.++.|++...|
T Consensus 285 ~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 285 MKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666777777777777777777777664443
No 155
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=54.76 E-value=1.2e+02 Score=24.73 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=22.3
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
++....++.+....++.++.........+...+...+.++...++++.+
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444
No 156
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=54.49 E-value=1.5e+02 Score=26.12 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=24.7
Q ss_pred HHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 037795 141 KEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLT 190 (227)
Q Consensus 141 K~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~ 190 (227)
+....++.++...+..++.....+...++...+..++-+..++++++.+.
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~ 90 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLE 90 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555555554444443
No 157
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=54.22 E-value=1.6e+02 Score=26.19 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=51.0
Q ss_pred CCCc-hhhhHHHHHHHHH-hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh---hhHH
Q 037795 123 HGFD-VKTVHSCLSEMQS-IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN---ESEI 197 (227)
Q Consensus 123 ~GFd-V~~l~sRL~kLL~-lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~---d~ei 197 (227)
++|| +..+..++..|+. +.+-...+.... ..+.....-...++..+..++..+..|+++......+- ....
T Consensus 7 ~~~n~~t~~~~~~~~l~~~~e~~~~~L~~~~----~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t 82 (264)
T PF06008_consen 7 QSVNALTGAWPAPYKLLSSIEDLTNQLRSYR----SKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNT 82 (264)
T ss_pred hcCcchhhhhhhHHHHHHHHHHHHHHHHHHh----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788 7888888888777 777666553333 33333344444555556666666666666554432221 4444
Q ss_pred HhhhhhHHHHHHHHHHHHHhHH
Q 037795 198 AASKSKVDVGNENIQNAQLDFE 219 (227)
Q Consensus 198 ~~Lks~~~~~~e~~~~ae~eF~ 219 (227)
.++...+..+...+.++...=+
T Consensus 83 ~~t~~~a~~L~~~i~~l~~~i~ 104 (264)
T PF06008_consen 83 ERTLQRAQDLEQFIQNLQDNIQ 104 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555554444333
No 158
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=54.11 E-value=78 Score=33.00 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=11.4
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHH
Q 037795 130 VHSCLSEMQSIKEKHEQLQEQLL 152 (227)
Q Consensus 130 l~sRL~kLL~lK~~~~~~~~~~k 152 (227)
++.|++-|-..+++|.+-++++.
T Consensus 563 i~~rv~~Lk~~~e~Ql~~L~~l~ 585 (717)
T PF10168_consen 563 IQRRVKLLKQQKEQQLKELQELQ 585 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544333333
No 159
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=53.47 E-value=1.7e+02 Score=26.35 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 037795 143 KHEQLQEQLLEYECHILEQTSEQSKIT 169 (227)
Q Consensus 143 ~~~~~~~~~k~le~~i~e~~~e~skle 169 (227)
....+...+|+++....+..+.+++++
T Consensus 119 dik~i~k~RKkLe~~RLd~D~~k~r~~ 145 (244)
T cd07595 119 EIPNIQKQKKRLSKLVLDMDSARSRYN 145 (244)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 334455566677666666666666664
No 160
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=53.23 E-value=1.6e+02 Score=28.16 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=34.5
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh----hhhhHHHhhhhhHHHHHHHHH
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS----KNESEIAASKSKVDVGNENIQ 212 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~----~~d~ei~~Lks~~~~~~e~~~ 212 (227)
--.+.++..++++.-+....++++.+.-..+.--.++.-.+.+.+|...+...+. +....+..|+.+.......+.
T Consensus 6 W~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 6 WEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLF 85 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHH
Confidence 3344555555555555555555554444444444444444444444443333321 113334444444444444444
Q ss_pred HHH
Q 037795 213 NAQ 215 (227)
Q Consensus 213 ~ae 215 (227)
|++
T Consensus 86 DmE 88 (330)
T PF07851_consen 86 DME 88 (330)
T ss_pred HHH
Confidence 444
No 161
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.08 E-value=3.6e+02 Score=29.95 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=14.3
Q ss_pred HhcccCCCchhhHHHHHHHHHHHHhCCCchh
Q 037795 98 TSKLQVSDPTSIFNGMFEALLNLESHGFDVK 128 (227)
Q Consensus 98 v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~ 128 (227)
.+++.-+.+....+.+..-..++++.+=..+
T Consensus 728 ~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ik 758 (1174)
T KOG0933|consen 728 EKRLEQNEFHKLLDDLKELLEEVEESEQQIK 758 (1174)
T ss_pred HHHHhcChHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 162
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=53.08 E-value=2.6e+02 Score=28.35 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhcccCCCc-----hhhHHHHHHHHHHHHhCCCchhhhHHHHHH
Q 037795 86 GYMLTFANVVEQTSKLQVSDP-----TSIFNGMFEALLNLESHGFDVKTVHSCLSE 136 (227)
Q Consensus 86 Glm~tF~~l~e~v~~l~idD~-----~s~fe~~~~tl~~LE~~GFdV~~l~sRL~k 136 (227)
+|=-+=.-|-.+|+.||.+.. ..+++.+...+.+|=+.-|+|.-=..-+++
T Consensus 335 dLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k 390 (527)
T PF15066_consen 335 DLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEK 390 (527)
T ss_pred HhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHH
Confidence 444555667888888887754 456677777778888888888765555555
No 163
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=52.99 E-value=1.1e+02 Score=30.74 Aligned_cols=52 Identities=15% Similarity=0.262 Sum_probs=28.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhh-hhhhHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 165 QSKITVELDHVVKEIKMLEESKAKLTS-KNESEIAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 165 ~skle~~l~e~er~I~eLe~~~~~~~~-~~d~ei~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
...+..+-..+||++.|-.+ +++ ..+.|.-+++.+.+++-.++..||.+|++
T Consensus 275 ~rnvavek~~lerkl~ea~r----l~elreg~e~e~~rkelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 275 QRNVAVEKLDLERKLDEAPR----LSELREGVENETSRKELEQLRVALEKAEKELEA 327 (575)
T ss_pred hhchhhhhhhHHHHHhhhhh----hhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444445555553332 222 23555555556777777788888877765
No 164
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=52.85 E-value=24 Score=24.73 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=20.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHh
Q 037795 165 QSKITVELDHVVKEIKMLEESKAKLT 190 (227)
Q Consensus 165 ~skle~~l~e~er~I~eLe~~~~~~~ 190 (227)
-..+++.+.+++..|.+||+++..+.
T Consensus 14 ~d~IEqkiedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 14 YDNIEQKIEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999998876654
No 165
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=52.76 E-value=1.9e+02 Score=30.96 Aligned_cols=67 Identities=15% Similarity=0.047 Sum_probs=50.0
Q ss_pred HHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHH-HHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 119 NLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYEC-HILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 119 ~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~-~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
.++++|=-|+-|++-+++|-++.+... ++.++.. -|+-|++++.+.+.......--|.+|+.+....
T Consensus 489 l~~K~ge~i~~L~sE~~~lk~il~~Ke----e~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~ 556 (961)
T KOG4673|consen 489 LEEKKGELITKLQSEENKLKSILRDKE----ETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAE 556 (961)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 467889999999999999999888877 3444433 377888888887777766666677777665553
No 166
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=52.75 E-value=1e+02 Score=29.76 Aligned_cols=28 Identities=7% Similarity=0.223 Sum_probs=15.8
Q ss_pred HhhhhhHHHHHHHHHHHHHhHHHhHhhh
Q 037795 198 AASKSKVDVGNENIQNAQLDFESVAVCL 225 (227)
Q Consensus 198 ~~Lks~~~~~~e~~~~ae~eF~svaaa~ 225 (227)
.+++.+...+++....++.++...+..+
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 76 KELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455555555566666666666555544
No 167
>PRK02119 hypothetical protein; Provisional
Probab=52.42 E-value=60 Score=24.15 Aligned_cols=21 Identities=5% Similarity=0.082 Sum_probs=10.3
Q ss_pred hhHHHhhhhhHHHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQNA 214 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~a 214 (227)
..+|.+|+..+..+.+.+.++
T Consensus 36 q~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 36 QFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 444555555555554444443
No 168
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=52.28 E-value=1.8e+02 Score=26.27 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=10.0
Q ss_pred hhHHHhhhhhHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQ 212 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~ 212 (227)
..|..+|..+.+..+++++
T Consensus 192 ~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 192 QDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred ccHHHHHHHHHHHHHHHHh
Confidence 4455555555555555443
No 169
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=52.25 E-value=1.3e+02 Score=27.86 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhh-------HHHhhhhhHHHHHHHHHHHH
Q 037795 147 LQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNES-------EIAASKSKVDVGNENIQNAQ 215 (227)
Q Consensus 147 ~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~-------ei~~Lks~~~~~~e~~~~ae 215 (227)
+++...+|++-=+..++++++|+..++..+.+|...++++.-+.--||. .|+.|...+..+.+.-++--
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEl 140 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDEL 140 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334433333445667788888888888888888888776544432 45555555555444444333
No 170
>PRK04863 mukB cell division protein MukB; Provisional
Probab=51.85 E-value=2.3e+02 Score=32.28 Aligned_cols=18 Identities=6% Similarity=0.300 Sum_probs=7.7
Q ss_pred HHHHHHHHHhCCCchhhh
Q 037795 113 MFEALLNLESHGFDVKTV 130 (227)
Q Consensus 113 ~~~tl~~LE~~GFdV~~l 130 (227)
+.++...|++-.-+..-+
T Consensus 295 k~eA~kkLe~tE~nL~rI 312 (1486)
T PRK04863 295 LYTSRRQLAAEQYRLVEM 312 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444454444343333
No 171
>PRK04406 hypothetical protein; Provisional
Probab=51.80 E-value=61 Score=24.33 Aligned_cols=18 Identities=6% Similarity=0.030 Sum_probs=7.5
Q ss_pred hHHHhhhhhHHHHHHHHH
Q 037795 195 SEIAASKSKVDVGNENIQ 212 (227)
Q Consensus 195 ~ei~~Lks~~~~~~e~~~ 212 (227)
.+|.+|+..+..+.+.+.
T Consensus 39 ~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 39 LLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 172
>PF08230 Cpl-7: Cpl-7 lysozyme C-terminal domain; InterPro: IPR013168 This domain was originally found in the C-terminal moiety of the Cp-7 lysin (lysozyme, P19385 from SWISSPROT) encoded by Bacteriophage Cp-7. It is assumed that this domain represents a cell wall binding motif although no direct evidence has been obtained so far to support this.
Probab=51.52 E-value=14 Score=25.36 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.5
Q ss_pred HHHHhCCCchhhhHHHHHHHHH
Q 037795 118 LNLESHGFDVKTVHSCLSEMQS 139 (227)
Q Consensus 118 ~~LE~~GFdV~~l~sRL~kLL~ 139 (227)
..|+..|||-..+|.|+|++|.
T Consensus 21 ~~L~~aGydY~~VQ~~VN~~l~ 42 (42)
T PF08230_consen 21 KRLTAAGYDYDAVQARVNELLK 42 (42)
T ss_pred HHHHHcCCCHHHHHHHHHHHcC
Confidence 4688899999999999999874
No 173
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=51.36 E-value=75 Score=33.06 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=7.6
Q ss_pred HHHHHHhcccCC
Q 037795 93 NVVEQTSKLQVS 104 (227)
Q Consensus 93 ~l~e~v~~l~id 104 (227)
.|-..|++|+-|
T Consensus 422 rLE~dvkkLrae 433 (697)
T PF09726_consen 422 RLEADVKKLRAE 433 (697)
T ss_pred HHHHHHHHHHHH
Confidence 455577777655
No 174
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=50.99 E-value=1.7e+02 Score=30.79 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=27.6
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK 192 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~ 192 (227)
++.....+..++..+...|.+...-=.|+=+...++|-.-..||.+...+++.
T Consensus 67 ~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~s 119 (717)
T PF09730_consen 67 LRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQS 119 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 44444444445555555544444444455555555555555566555555443
No 175
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=50.96 E-value=1.1e+02 Score=29.65 Aligned_cols=37 Identities=16% Similarity=0.387 Sum_probs=20.6
Q ss_pred HHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037795 118 LNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECH 157 (227)
Q Consensus 118 ~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~ 157 (227)
..|.+-|+++.. -+.+++.+-..+.++..+...++.+
T Consensus 16 ~~l~~R~~~~~~---~vd~i~~ld~~~r~~~~~~~~l~~e 52 (418)
T TIGR00414 16 ESLKARGLSVDI---DLEKLIALDDERKKLLSEIEELQAK 52 (418)
T ss_pred HHHHhcCCChhh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555765311 2566777666666665555555544
No 176
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=50.69 E-value=1.1e+02 Score=23.72 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=15.7
Q ss_pred HHHHHHHHhCCCchhhhHHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL~ 135 (227)
+..+..|...||....++.-|.
T Consensus 47 l~~I~~lr~~G~sL~eI~~~l~ 68 (113)
T cd01109 47 LEFIKCLRNTGMSIKDIKEYAE 68 (113)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4556677888999887766554
No 177
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=50.53 E-value=81 Score=28.04 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=10.6
Q ss_pred HHHHHHhhhhhhhhhhhhhhHHHHH
Q 037795 153 EYECHILEQTSEQSKITVELDHVVK 177 (227)
Q Consensus 153 ~le~~i~e~~~e~skle~~l~e~er 177 (227)
.+.+++.++...-|-++++|++++.
T Consensus 90 ~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 90 ALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444443
No 178
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=50.49 E-value=1.3e+02 Score=26.76 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHh-----cccCCCch---hhHHHHHHHHHHHHhC-C--C-ch-hhhHHHHHHHHHhHHhHHHHHHHHHH
Q 037795 87 YMLTFANVVEQTS-----KLQVSDPT---SIFNGMFEALLNLESH-G--F-DV-KTVHSCLSEMQSIKEKHEQLQEQLLE 153 (227)
Q Consensus 87 lm~tF~~l~e~v~-----~l~idD~~---s~fe~~~~tl~~LE~~-G--F-dV-~~l~sRL~kLL~lK~~~~~~~~~~k~ 153 (227)
-..+|++.+.... +-.+||++ ..+.....+|.+++.. . + ++ ..+...|.+. .|++.....+.+|+
T Consensus 38 a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~~l~~~L~~F--~kedi~~~Ke~kK~ 115 (207)
T cd07636 38 AKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIENASEVLITPLEKF--RKEQIGAAKEAKKK 115 (207)
T ss_pred HHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhh
Confidence 3557888888888 66677777 5566666677776643 1 0 11 1222223222 44455556666666
Q ss_pred HHHHHhhhhhhhhh
Q 037795 154 YECHILEQTSEQSK 167 (227)
Q Consensus 154 le~~i~e~~~e~sk 167 (227)
.++.-....+.+.|
T Consensus 116 FdK~se~~~~al~k 129 (207)
T cd07636 116 YDKETEKYCAVLEK 129 (207)
T ss_pred HhhhhhHHHHHHHH
Confidence 66654444444443
No 179
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=50.43 E-value=1.2e+02 Score=23.74 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=15.7
Q ss_pred HHHHHHHhCCCchhhhHHHHH
Q 037795 115 EALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 115 ~tl~~LE~~GFdV~~l~sRL~ 135 (227)
..+..|...||.+..++.-++
T Consensus 48 ~~I~~lr~~G~sl~eI~~~l~ 68 (123)
T cd04770 48 RFIRRAQALGFSLAEIRELLS 68 (123)
T ss_pred HHHHHHHHCCCCHHHHHHHHH
Confidence 566678888999888776554
No 180
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=50.40 E-value=70 Score=23.27 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 037795 149 EQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK 192 (227)
Q Consensus 149 ~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~ 192 (227)
+.+...+.++.++......++......|.+|..+..++..++++
T Consensus 6 e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444454555555555555555566666666555554443
No 181
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=50.30 E-value=63 Score=28.95 Aligned_cols=32 Identities=13% Similarity=0.023 Sum_probs=24.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 037795 162 TSEQSKITVELDHVVKEIKMLEESKAKLTSKN 193 (227)
Q Consensus 162 ~~e~skle~~l~e~er~I~eLe~~~~~~~~~~ 193 (227)
+.|..-|.+.|.-.+||..||+|+|+....++
T Consensus 57 EeEI~TLrqVLaAKerH~~ELKRKLGlt~~~E 88 (208)
T KOG4010|consen 57 EEEIVTLRQVLAAKERHAAELKRKLGLTVLKE 88 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH
Confidence 44556677778889999999999999855443
No 182
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=50.22 E-value=1.9e+02 Score=25.95 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=27.8
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
|..++..-.+...++...+..+..+.-.....+..-..++++..++++...++
T Consensus 14 L~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL 66 (246)
T PF00769_consen 14 LRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRL 66 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555544444443
No 183
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=50.03 E-value=1.2e+02 Score=23.43 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhHHHhHhhh
Q 037795 206 VGNENIQNAQLDFESVAVCL 225 (227)
Q Consensus 206 ~~~e~~~~ae~eF~svaaa~ 225 (227)
.+.+.+++++.+|.+-+.++
T Consensus 73 ~~i~~L~~~E~~~~~~l~~~ 92 (96)
T PF08647_consen 73 ELIEQLKETEKEFVRKLKNL 92 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445556777777766543
No 184
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.14 E-value=77 Score=31.75 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=23.0
Q ss_pred HhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 037795 139 SIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESK 186 (227)
Q Consensus 139 ~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~ 186 (227)
..+....+++.+++.++..+......+..+++.|+++|..+..|+.++
T Consensus 73 eqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444455555555555555555544
No 185
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=48.92 E-value=22 Score=27.87 Aligned_cols=28 Identities=29% Similarity=0.220 Sum_probs=22.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 037795 164 EQSKITVELDHVVKEIKMLEESKAKLTS 191 (227)
Q Consensus 164 e~skle~~l~e~er~I~eLe~~~~~~~~ 191 (227)
+.++-.+-|...|+.|..||.+|+..+.
T Consensus 67 eV~kTh~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 67 EVSKTHEAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566777999999999999998875
No 186
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=48.84 E-value=2.3e+02 Score=26.45 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=29.5
Q ss_pred HhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh---hhhHHHhhhhhHHHH
Q 037795 158 ILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK---NESEIAASKSKVDVG 207 (227)
Q Consensus 158 i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~---~d~ei~~Lks~~~~~ 207 (227)
++....++-+.++++.++...|.+....++.+..+ ..+.|..+++.|...
T Consensus 209 Le~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 209 LEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455555556666666666666666655333 366677777777665
No 187
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=48.81 E-value=82 Score=24.57 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCchhhhHHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL~ 135 (227)
+..+..|...||.+..++.-++
T Consensus 46 l~~I~~lr~~G~sl~eI~~~l~ 67 (112)
T cd01282 46 VRQIRRLLAAGLTLEEIREFLP 67 (112)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4566677888999888776543
No 188
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=48.49 E-value=2e+02 Score=29.36 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=37.9
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK 192 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~ 192 (227)
+-.+|..+.+.+..+.+..+++.+.....+.+++++...-+.|.-++.++..++.+
T Consensus 122 ~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~e 177 (546)
T KOG0977|consen 122 LKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAE 177 (546)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666677777667777777777777777777777776666444
No 189
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.20 E-value=1.5e+02 Score=24.27 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchh
Q 037795 88 MLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVK 128 (227)
Q Consensus 88 m~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~ 128 (227)
+-.|+..++.+..+.-+-.......+..+|.+....-..|+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~~s~k 106 (218)
T cd07596 66 LSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQAVK 106 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666665555553
No 190
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=48.15 E-value=3.4e+02 Score=30.15 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHh----CCCchhhhHHHHHHHHHhH----HhHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 037795 108 SIFNGMFEALLNLES----HGFDVKTVHSCLSEMQSIK----EKHEQLQEQLLEYECHILEQTSEQSKITVE 171 (227)
Q Consensus 108 s~fe~~~~tl~~LE~----~GFdV~~l~sRL~kLL~lK----~~~~~~~~~~k~le~~i~e~~~e~skle~~ 171 (227)
+.|++++....+|++ .---+.-+..||+.|+..+ +--..++.+.+++.+.+..++...++-..+
T Consensus 394 ss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e 465 (1195)
T KOG4643|consen 394 SSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLE 465 (1195)
T ss_pred hhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 378888888888887 3445666888888877643 333345555555555555555555444333
No 191
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=47.99 E-value=1.5e+02 Score=26.39 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=14.9
Q ss_pred HhHHhHHHHHHHHHHHHHHHhhhhhhhh
Q 037795 139 SIKEKHEQLQEQLLEYECHILEQTSEQS 166 (227)
Q Consensus 139 ~lK~~~~~~~~~~k~le~~i~e~~~e~s 166 (227)
.|+..-.+++.+++++.+++.+...+..
T Consensus 106 ~Lqeen~kl~~e~~~lk~~~~eL~~~~~ 133 (193)
T PF14662_consen 106 TLQEENGKLLAERDGLKKRSKELATEKA 133 (193)
T ss_pred HHHHHHhHHHHhhhhHHHHHHHHHHhhH
Confidence 3555555555555555555555544433
No 192
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=47.71 E-value=1.6e+02 Score=31.39 Aligned_cols=112 Identities=17% Similarity=0.109 Sum_probs=60.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcccCCCch---------hhHHHHHHHHHHHHhCCCch---------------hhhHHH
Q 037795 78 MYLEGLVTGYMLTFANVVEQTSKLQVSDPT---------SIFNGMFEALLNLESHGFDV---------------KTVHSC 133 (227)
Q Consensus 78 ~~REg~A~Glm~tF~~l~e~v~~l~idD~~---------s~fe~~~~tl~~LE~~GFdV---------------~~l~sR 133 (227)
+-||.-++..=..=+-|.+...++-..|.. +.-+++---++.||+--+-. +.+..|
T Consensus 363 eaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~ 442 (961)
T KOG4673|consen 363 EAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAA 442 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 457777766655555555544443322221 12234444566666542211 123334
Q ss_pred HHH-HHHhHHhHH-HHHHHHHHHHHHHhhhhhhhhhhhhhhHHHH-------HHHHHHHHHHHHH
Q 037795 134 LSE-MQSIKEKHE-QLQEQLLEYECHILEQTSEQSKITVELDHVV-------KEIKMLEESKAKL 189 (227)
Q Consensus 134 L~k-LL~lK~~~~-~~~~~~k~le~~i~e~~~e~skle~~l~e~e-------r~I~eLe~~~~~~ 189 (227)
|++ +|.=||... .++.+-.+|-+++...+.-..||.+.+++.| ..|.+|+.+...+
T Consensus 443 l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~l 507 (961)
T KOG4673|consen 443 LLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKL 507 (961)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHH
Confidence 444 444444433 3666677777777777777777777776666 4566666666554
No 193
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=47.56 E-value=1.1e+02 Score=31.96 Aligned_cols=42 Identities=17% Similarity=0.391 Sum_probs=23.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHH
Q 037795 169 TVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNA 214 (227)
Q Consensus 169 e~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~a 214 (227)
.-+|.++..+|.||++ +-.++.-|+.+||..+++++-+...+
T Consensus 106 ~seI~~~n~kiEelk~----~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 106 NSEIEEINTKIEELKR----LIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HhHHHHHHHHHHHHHH----HHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 3334444444555554 33344557777887777777666544
No 194
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.74 E-value=2e+02 Score=30.25 Aligned_cols=14 Identities=29% Similarity=0.131 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 037795 175 VVKEIKMLEESKAK 188 (227)
Q Consensus 175 ~er~I~eLe~~~~~ 188 (227)
.++...+|+++...
T Consensus 541 ~~~~~~~l~~~~~~ 554 (771)
T TIGR01069 541 QEKLKKELEQEMEE 554 (771)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 195
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=46.63 E-value=1.3e+02 Score=23.77 Aligned_cols=43 Identities=30% Similarity=0.325 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 037795 143 KHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEES 185 (227)
Q Consensus 143 ~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~ 185 (227)
.|..+......+++.+.....+..+++..+.+...+|..|+++
T Consensus 74 ~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 74 CQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566666666666666666666666666666666553
No 196
>PLN02678 seryl-tRNA synthetase
Probab=46.31 E-value=2.3e+02 Score=27.96 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=20.6
Q ss_pred HHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 037795 120 LESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHI 158 (227)
Q Consensus 120 LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i 158 (227)
|.+-|+|+. -+.+++.+-..+.+++.+...+..+.
T Consensus 22 l~~R~~~~~----~id~il~ld~~~r~l~~~~e~lr~er 56 (448)
T PLN02678 22 QRRRFASVE----LVDEVIALDKEWRQRQFELDSLRKEF 56 (448)
T ss_pred HHhhCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566532 36777777766666666665555543
No 197
>PLN02320 seryl-tRNA synthetase
Probab=45.96 E-value=2.8e+02 Score=27.93 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=19.7
Q ss_pred HHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037795 117 LLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECH 157 (227)
Q Consensus 117 l~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~ 157 (227)
...|..-|||+. +++++.+-..+.+++.+...+..+
T Consensus 80 ~~~l~~R~~~~~-----vd~l~~ld~~~r~~~~~~~~lr~e 115 (502)
T PLN02320 80 AINIRNRNSNAN-----LELVLELYENMLALQKEVERLRAE 115 (502)
T ss_pred HHHHHhcCCCcC-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677531 566666666655555555444443
No 198
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=45.90 E-value=1.4e+02 Score=24.67 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 109 IFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 109 ~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
.++...++++.=. +||..||..|=.=-+.+..+ .+..++++.+.....+.+...++.+...+..|+-++..
T Consensus 51 ql~~vs~~l~~tK------khLsqRId~vd~klDe~~ei---~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 51 QLEQVSESLSSTK------KHLSQRIDRVDDKLDEQKEI---SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544 35777887764433333322 23334445555556666666666666666666665554
Q ss_pred H
Q 037795 189 L 189 (227)
Q Consensus 189 ~ 189 (227)
+
T Consensus 122 i 122 (126)
T PF07889_consen 122 I 122 (126)
T ss_pred H
Confidence 4
No 199
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=45.45 E-value=3.5e+02 Score=30.40 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=38.8
Q ss_pred CCCchhhHHHHHHHHHHHH-hCCCchhhhHHH-HHHHHHhHHhHHHHHHHHHHHHHHHh
Q 037795 103 VSDPTSIFNGMFEALLNLE-SHGFDVKTVHSC-LSEMQSIKEKHEQLQEQLLEYECHIL 159 (227)
Q Consensus 103 idD~~s~fe~~~~tl~~LE-~~GFdV~~l~sR-L~kLL~lK~~~~~~~~~~k~le~~i~ 159 (227)
+..+......++....+|= .+++.+++..++ ..++-.....+..+.+.+|...+++.
T Consensus 300 lE~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~ 358 (1293)
T KOG0996|consen 300 LEGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFD 358 (1293)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 3455555556666666555 779999999888 66677777777777777766666544
No 200
>PRK12704 phosphodiesterase; Provisional
Probab=45.41 E-value=2.5e+02 Score=28.11 Aligned_cols=6 Identities=33% Similarity=0.678 Sum_probs=2.3
Q ss_pred HHHHHH
Q 037795 84 VTGYML 89 (227)
Q Consensus 84 A~Glm~ 89 (227)
++|..+
T Consensus 15 ~iG~~i 20 (520)
T PRK12704 15 VVGAVI 20 (520)
T ss_pred HHHHHH
Confidence 344333
No 201
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.36 E-value=1.9e+02 Score=29.09 Aligned_cols=36 Identities=28% Similarity=0.271 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHH
Q 037795 180 KMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQ 215 (227)
Q Consensus 180 ~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae 215 (227)
.|..+++-.+.-.|.++|+.||.....+++.|+...
T Consensus 147 ~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 147 KEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred HhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455555555666778999999988888888887655
No 202
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=45.36 E-value=3.2e+02 Score=27.16 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=17.5
Q ss_pred hhhhhhhhcccCC------CCCCCccccCCchh
Q 037795 52 RAIEPMGVFQKMP------QKPHFNLLDGSKDM 78 (227)
Q Consensus 52 ~~~EsmeVFk~vP------Q~PHF~pL~~~~e~ 78 (227)
+.+-+-+-++..| +.|.|..--++.-.
T Consensus 202 ~~~~~e~~~~~l~~~~tl~~~~~~gs~~E~~S~ 234 (455)
T KOG3850|consen 202 ENFGPERNARALPGSATLVSPPKYGSDDECSSS 234 (455)
T ss_pred cccchhhhhccCCCcccccCCCCCCCCcccccC
Confidence 3444556677777 88888776665433
No 203
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=45.06 E-value=96 Score=22.56 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=13.1
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 037795 152 LEYECHILEQTSEQSKITVELDHVVKEIKMLEESK 186 (227)
Q Consensus 152 k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~ 186 (227)
..|+.++.-.+.-...+...+-.-.+.|..|++++
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l 41 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQL 41 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333433333
No 204
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.93 E-value=2.5e+02 Score=25.75 Aligned_cols=82 Identities=11% Similarity=0.106 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhhh----------------hhHHHHHHHHHHHHHHHHHhhhh-hhHHHhhhhhHH
Q 037795 143 KHEQLQEQLLEYECHILEQTSEQSKITV----------------ELDHVVKEIKMLEESKAKLTSKN-ESEIAASKSKVD 205 (227)
Q Consensus 143 ~~~~~~~~~k~le~~i~e~~~e~skle~----------------~l~e~er~I~eLe~~~~~~~~~~-d~ei~~Lks~~~ 205 (227)
+...+..++|.+++.-.+..+-+.|++. ..+++...+.+.+.++...+..- ..-+.=|+.+++
T Consensus 119 dlk~I~k~RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e 198 (248)
T cd07619 119 EIPNIQKQRKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKADALREEMEEAANRMEICRDQLSADMYSFVAKEID 198 (248)
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHhccccccccccccCCCCccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445556666666666666666666531 22344444444444444322221 223344455555
Q ss_pred HHHHHHH--HHHHhHHHhHhh
Q 037795 206 VGNENIQ--NAQLDFESVAVC 224 (227)
Q Consensus 206 ~~~e~~~--~ae~eF~svaaa 224 (227)
.++.-+. .|..+||.-|+.
T Consensus 199 ~~~~l~~Lv~AQleYHr~A~e 219 (248)
T cd07619 199 YANYFQTLIEVQAEYHRKSLE 219 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 5555433 778888877654
No 205
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=44.75 E-value=1.7e+02 Score=25.00 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=10.5
Q ss_pred hhHHHhhhhhHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQ 212 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~ 212 (227)
+.+|..|+.+.+.++..|+
T Consensus 162 ~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 162 NGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp T--HHHHHHHHHHHTGGG-
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 6666666666666666554
No 206
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=44.71 E-value=3.4e+02 Score=27.17 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=15.1
Q ss_pred HHHHHHHHhcccCCCchhhHHHHHHHHHH
Q 037795 91 FANVVEQTSKLQVSDPTSIFNGMFEALLN 119 (227)
Q Consensus 91 F~~l~e~v~~l~idD~~s~fe~~~~tl~~ 119 (227)
|-.+.++=-.+..++..+.+..+-+.+..
T Consensus 239 y~~m~~~gy~~~~~~i~~~i~~l~~~i~~ 267 (569)
T PRK04778 239 YRELVEEGYHLDHLDIEKEIQDLKEQIDE 267 (569)
T ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHHHH
Confidence 34444444455555555555555555544
No 207
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=44.46 E-value=2.4e+02 Score=25.34 Aligned_cols=52 Identities=12% Similarity=0.195 Sum_probs=41.5
Q ss_pred HHHHHHHHHHH-HHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHh
Q 037795 86 GYMLTFANVVE-QTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSI 140 (227)
Q Consensus 86 Glm~tF~~l~e-~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~l 140 (227)
|++-++...++ .|.+..++|...+|+....-+..|+.| .+.+.....+|..=
T Consensus 1 g~~k~~~k~~D~~v~~~~~~d~D~~Fe~~k~~l~~l~~~---Lk~~~~~~~~lv~~ 53 (219)
T cd07621 1 GFLKSISKSADEELLLSGQKDVDEFFEQEKNFLVEYHNR---IKDATAKADKMTRK 53 (219)
T ss_pred CHHHHhHHhhhHHHHcCCCCCchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 56777788888 888889999999999999999999876 56666666666543
No 208
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=44.31 E-value=1.7e+02 Score=23.55 Aligned_cols=15 Identities=7% Similarity=0.151 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHhC
Q 037795 109 IFNGMFEALLNLESH 123 (227)
Q Consensus 109 ~fe~~~~tl~~LE~~ 123 (227)
.|..++++|..+-..
T Consensus 17 ~l~~l~k~~~~~~~~ 31 (139)
T PF05615_consen 17 PLKRLLKRFLKWCNL 31 (139)
T ss_pred hHHHHHHHHHHHHhh
Confidence 355555555444333
No 209
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=44.01 E-value=2.8e+02 Score=26.58 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=32.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhh------hhhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 168 ITVELDHVVKEIKMLEESKAKLTSK------NESEIAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 168 le~~l~e~er~I~eLe~~~~~~~~~------~d~ei~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
++.++...+..+..++++++.++.. ...++.+|+.+++..++.....-..++..
T Consensus 322 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea 381 (498)
T TIGR03007 322 AEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESA 381 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555554333 27788888888888777776666665543
No 210
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=43.83 E-value=2.3e+02 Score=24.99 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=52.8
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHH-HhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH------hhhhhhHHHhhhhhHHH
Q 037795 134 LSEMQSIKEKHEQLQEQLLEYECH-ILEQTSEQSKITVELDHVVKEIKMLEESKAKL------TSKNESEIAASKSKVDV 206 (227)
Q Consensus 134 L~kLL~lK~~~~~~~~~~k~le~~-i~e~~~e~skle~~l~e~er~I~eLe~~~~~~------~~~~d~ei~~Lks~~~~ 206 (227)
-++...|.+++..-.++...-..+ +...+...+.++..+-..++.+..+++++-.+ +...+.+|..|+.++..
T Consensus 17 ~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~ 96 (206)
T PF14988_consen 17 EKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEK 96 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666555444443333222 33445556677777777888888888877765 33459999999988888
Q ss_pred HHHHHH----HHHHhH
Q 037795 207 GNENIQ----NAQLDF 218 (227)
Q Consensus 207 ~~e~~~----~ae~eF 218 (227)
+..... .|+.+|
T Consensus 97 ~~~e~~~~l~~~~~qf 112 (206)
T PF14988_consen 97 MRAEHAEKLQEAESQF 112 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 665554 444444
No 211
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=43.72 E-value=2e+02 Score=24.21 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=36.1
Q ss_pred HHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh----------hhHHHhhhhhHHHHHHHHHHHHHh
Q 037795 153 EYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN----------ESEIAASKSKVDVGNENIQNAQLD 217 (227)
Q Consensus 153 ~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~----------d~ei~~Lks~~~~~~e~~~~ae~e 217 (227)
.+....+....+...+++.+..+-..+..|+.++..+++.+ ...|..|++....+..-++.++.+
T Consensus 42 ~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 42 CLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33333444455566677777777777777777777765543 333444444444444444444433
No 212
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=43.40 E-value=2.6e+02 Score=26.13 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=39.6
Q ss_pred CCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 037795 124 GFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVE 171 (227)
Q Consensus 124 GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~ 171 (227)
-..-+..|..|+.=+.-+..|-+.+..|.+++-+|.+++.+..+|..+
T Consensus 65 S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~e 112 (292)
T KOG4005|consen 65 SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNE 112 (292)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888888888888889999999999999999988888877665
No 213
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=43.28 E-value=1.1e+02 Score=21.33 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhh
Q 037795 108 SIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQ 161 (227)
Q Consensus 108 s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~ 161 (227)
.++......+...+- |-++..+...+.++-.++.........+..+.......
T Consensus 15 ~Wl~~~e~~l~~~~~-~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L 67 (105)
T PF00435_consen 15 DWLQETEAKLSSSEP-GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQL 67 (105)
T ss_dssp HHHHHHHHHHCSCTH-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC-CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 455555555544444 78888888888887777776666666666665543333
No 214
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=43.17 E-value=2.3e+02 Score=25.39 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=16.5
Q ss_pred HhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 158 ILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 158 i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
+........+++..+..++.+|.+++.+...
T Consensus 108 ~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~ 138 (225)
T COG1842 108 LQQAEEQVEKLKKQLAALEQKIAELRAKKEA 138 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555666666666666555544
No 215
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=43.13 E-value=2.6e+02 Score=30.83 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=12.3
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhH
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDF 218 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF 218 (227)
...+-.++..++.-+..+..++..|
T Consensus 324 ~~~le~lk~~~~~rq~~i~~~~k~i 348 (1072)
T KOG0979|consen 324 KNKLESLKKAAEKRQKRIEKAKKMI 348 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555444
No 216
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=43.01 E-value=1.9e+02 Score=25.87 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=16.2
Q ss_pred HhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 158 ILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 158 i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
+....++..-+...+..++..+.+|..+++..
T Consensus 75 Lqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 75 LQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 33333344444455555555566666655553
No 217
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=42.88 E-value=2.5e+02 Score=28.91 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=31.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhh---hhhHHHhhhhhHHHHHHHHH
Q 037795 166 SKITVELDHVVKEIKMLEESKAKLTSK---NESEIAASKSKVDVGNENIQ 212 (227)
Q Consensus 166 skle~~l~e~er~I~eLe~~~~~~~~~---~d~ei~~Lks~~~~~~e~~~ 212 (227)
..-.+.-+++..++.++++++..++++ ++.++.+|+..-+.+.-.++
T Consensus 191 q~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lq 240 (617)
T PF15070_consen 191 QSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQ 240 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 333444557788888888888887665 37788888776555444444
No 218
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=42.84 E-value=2.4e+02 Score=30.79 Aligned_cols=101 Identities=9% Similarity=0.103 Sum_probs=52.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHH-HHH----hHHhHHHHHHHHH
Q 037795 78 MYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSE-MQS----IKEKHEQLQEQLL 152 (227)
Q Consensus 78 ~~REg~A~Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~k-LL~----lK~~~~~~~~~~k 152 (227)
++|-..+=-+|-..-.--.-+.+++-.- ..+-+ ..+++.|-|.-+...+=++ ++. ++..-..+.+.++
T Consensus 30 dlnNes~edlk~r~L~aeniiqdlrser-----dalhe--~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk 102 (1265)
T KOG0976|consen 30 DLNNESHEDLKKRLLDAENIIQDLRSER-----DALHE--SLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLK 102 (1265)
T ss_pred eccccchHHHHHHHHHHHHHHHHHHhhH-----HHHHH--HHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHH
Confidence 3444555555554444444444433221 11222 2367778877776665544 222 3333444566666
Q ss_pred HHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 037795 153 EYECHILEQTSEQSKITVELDHVVKEIKMLEES 185 (227)
Q Consensus 153 ~le~~i~e~~~e~skle~~l~e~er~I~eLe~~ 185 (227)
..+.+|..+.....+++-+.-.+.-.|..+|.+
T Consensus 103 ~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d 135 (1265)
T KOG0976|consen 103 HHESQIRILQNKCLRLEMEKQKLQDTIQGAQDD 135 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655555556555553
No 219
>PRK13694 hypothetical protein; Provisional
Probab=42.52 E-value=34 Score=26.70 Aligned_cols=50 Identities=18% Similarity=0.358 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHH
Q 037795 81 EGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCL 134 (227)
Q Consensus 81 Eg~A~Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL 134 (227)
.|+|.+-.-+|+.=+|.+.. + -..+-+.....+++--.+||||+.++.-+
T Consensus 7 ~~va~~~Lr~fIERIERLEe---E-kk~i~~dikdVyaEAK~~GfD~K~~r~ii 56 (83)
T PRK13694 7 EVVAKEQLRAFIERIERLEE---E-KKTISDDIKDVYAEAKGNGFDVKALKTII 56 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 34566666666654443321 1 22344566678999999999999987543
No 220
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=42.25 E-value=14 Score=28.93 Aligned_cols=59 Identities=24% Similarity=0.347 Sum_probs=24.3
Q ss_pred CCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 123 HGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 123 ~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
.|||..-+-.-|..|. .....+..+...++.++......+..+......+.+.+...++
T Consensus 16 rGYd~~eVD~fl~~l~---~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~ 74 (131)
T PF05103_consen 16 RGYDPDEVDDFLDELA---EELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQE 74 (131)
T ss_dssp EEEEHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCT--------------------
T ss_pred CCcCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhh
Confidence 4888887777776654 3444455555666666666665555555554555554544444
No 221
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=42.22 E-value=18 Score=34.47 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=9.7
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHh
Q 037795 195 SEIAASKSKVDVGNENIQNAQLD 217 (227)
Q Consensus 195 ~ei~~Lks~~~~~~e~~~~ae~e 217 (227)
-+|.-||+.|....=.+.+.+.+
T Consensus 126 TdvsNLksdVSt~aL~ItdLe~R 148 (326)
T PF04582_consen 126 TDVSNLKSDVSTQALNITDLESR 148 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchHhhHHHH
Confidence 34444444444444444444433
No 222
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=42.17 E-value=5e+02 Score=28.74 Aligned_cols=67 Identities=19% Similarity=0.287 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCCchhhhHHHHHHHHH----hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHH
Q 037795 112 GMFEALLNLESHGFDVKTVHSCLSEMQS----IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKM 181 (227)
Q Consensus 112 ~~~~tl~~LE~~GFdV~~l~sRL~kLL~----lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~e 181 (227)
...+-+.+|+. .+..++.+|..+-. .-.....+..+..+++.++.+...++..++.++.++...|.+
T Consensus 445 ~~~~~ieele~---el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~ 515 (1041)
T KOG0243|consen 445 EMAEQIEELEE---ELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKE 515 (1041)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444 44555555544322 333344555666666777777777777777666666655433
No 223
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=42.04 E-value=3.1e+02 Score=25.96 Aligned_cols=50 Identities=28% Similarity=0.323 Sum_probs=25.4
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
+|.....+..+...+-.++.+.-.++.++-...|++-..+.++.+++...
T Consensus 170 lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~ 219 (294)
T COG1340 170 LKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVEL 219 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444445555566666666666666665553
No 224
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=41.85 E-value=1.6e+02 Score=29.35 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=38.9
Q ss_pred HHhCCCchhhhHHHHHH-----HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 037795 120 LESHGFDVKTVHSCLSE-----MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLT 190 (227)
Q Consensus 120 LE~~GFdV~~l~sRL~k-----LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~ 190 (227)
++++-=+|..+..+|.. |+.||.+.. .+..+-..+..+...-.|+...+..++.++.++++++..+.
T Consensus 402 i~~ml~~V~~ii~~Lt~~~~~~L~~Ik~Spr----Yvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~ 473 (507)
T PF05600_consen 402 IEEMLSAVEEIISQLTNPRTQHLFMIKSSPR----YVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELE 473 (507)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33443445555555544 666666665 33445555555566666777777777777777776555443
No 225
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.43 E-value=4.3e+02 Score=27.48 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=18.2
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHH
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFE 219 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~ 219 (227)
+--|-.++.+++-+...|.-|..+-.
T Consensus 420 ~d~i~~le~e~~~y~de~~kaqaevd 445 (654)
T KOG4809|consen 420 ADQIKQLEKEASYYRDECGKAQAEVD 445 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778888888888876655443
No 226
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=41.37 E-value=2.6e+02 Score=25.56 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=8.1
Q ss_pred HHhhhhhHHHHHHHHHHHH
Q 037795 197 IAASKSKVDVGNENIQNAQ 215 (227)
Q Consensus 197 i~~Lks~~~~~~e~~~~ae 215 (227)
+..++.....++..+..++
T Consensus 248 l~~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 248 LTEAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 227
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=41.28 E-value=3e+02 Score=25.61 Aligned_cols=127 Identities=14% Similarity=0.129 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcccCCCc-----hhhHHHHHH-HHHHHHhCCCchhhhHHHHHHH-HHhHHhHHHHHHHHHHHHHHHhhhh
Q 037795 90 TFANVVEQTSKLQVSDP-----TSIFNGMFE-ALLNLESHGFDVKTVHSCLSEM-QSIKEKHEQLQEQLLEYECHILEQT 162 (227)
Q Consensus 90 tF~~l~e~v~~l~idD~-----~s~fe~~~~-tl~~LE~~GFdV~~l~sRL~kL-L~lK~~~~~~~~~~k~le~~i~e~~ 162 (227)
+...|...+.++..++. ...|..+.. .-..+++.-..-..+...|+++ ..|...+..+...-..++.-.....
T Consensus 50 ~L~~L~~~~~~~dp~~~~~~~~~~~l~klf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~ 129 (333)
T PF05816_consen 50 LLNELRKEMDELDPSELKDEKKKGFLGKLFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNW 129 (333)
T ss_pred HHHHHHHHHHhCChhhhhhhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777765553 233333332 1224444444445555556653 3466666666666666666555555
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHH-hhhhh------hHHHhhhhhHHHHHHHHHHHHH
Q 037795 163 SEQSKITVELDHVVKEIKMLEESKAKL-TSKNE------SEIAASKSKVDVGNENIQNAQL 216 (227)
Q Consensus 163 ~e~skle~~l~e~er~I~eLe~~~~~~-~~~~d------~ei~~Lks~~~~~~e~~~~ae~ 216 (227)
.....|+.-+.--+.++.+++.+..-. ..... .++..++.-++.+++.+.|.+.
T Consensus 130 ~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d~~~~q~~~~~~~~l~~leqRi~DL~~ 190 (333)
T PF05816_consen 130 EYYQELEKYIAAGELKLEELEAELLPALQADAEGDQMDAQELADLEQALFRLEQRIQDLQL 190 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555566666543222 21112 5666777777777777777664
No 228
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=41.23 E-value=2.4e+02 Score=29.72 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=34.1
Q ss_pred HHHHHH-HHHhHHhHHHHHHHHHHHHHHHhhhhhh----hhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 131 HSCLSE-MQSIKEKHEQLQEQLLEYECHILEQTSE----QSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 131 ~sRL~k-LL~lK~~~~~~~~~~k~le~~i~e~~~e----~skle~~l~e~er~I~eLe~~~~~ 188 (227)
..|.++ +..++.-++.+.+.-+.++++++..... ..++.+.+++.+++++++...+-.
T Consensus 100 ~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k 162 (716)
T KOG4593|consen 100 VDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNK 162 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 2334444455555556666665544433 346677788888888887775444
No 229
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=40.90 E-value=2e+02 Score=27.22 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=43.2
Q ss_pred chhhhHHHHHHHHH-hHHhHHHHHHHHHHHHHH-HhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 037795 126 DVKTVHSCLSEMQS-IKEKHEQLQEQLLEYECH-ILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK 192 (227)
Q Consensus 126 dV~~l~sRL~kLL~-lK~~~~~~~~~~k~le~~-i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~ 192 (227)
.|+-+..-.++|.+ |-|+-.-|+.+|.+++.+ |+=+.+...+.++.-.-.|++.-.-++|++.|+..
T Consensus 183 S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRad 251 (302)
T PF07139_consen 183 SIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRAD 251 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 34445555555554 667777788888888777 44445555566666666777777777777776553
No 230
>PRK00846 hypothetical protein; Provisional
Probab=40.84 E-value=1.5e+02 Score=22.59 Aligned_cols=19 Identities=11% Similarity=-0.038 Sum_probs=7.5
Q ss_pred HHHhhhhhHHHHHHHHHHH
Q 037795 196 EIAASKSKVDVGNENIQNA 214 (227)
Q Consensus 196 ei~~Lks~~~~~~e~~~~a 214 (227)
.|.+|+..+..+.+.++++
T Consensus 42 ~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 42 TGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444443333333
No 231
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=40.71 E-value=3.1e+02 Score=25.57 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 150 QLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 150 ~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
.+..+++++.+...++.-+-.++.+++.+..++++
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~e 170 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQE 170 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333333444444443
No 232
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=40.71 E-value=1.5e+02 Score=21.99 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhc
Q 037795 80 LEGLVTGYMLTFANVVEQTSK 100 (227)
Q Consensus 80 REg~A~Glm~tF~~l~e~v~~ 100 (227)
|+.+|-|++..|..-++.+..
T Consensus 1 ~~~La~Gl~~~l~P~l~~~~~ 21 (92)
T PF14712_consen 1 REALAEGLLSLLEPDLDRLDQ 21 (92)
T ss_pred ChHHHHHHHHHHhhhHHHHHH
Confidence 678899999999888877653
No 233
>PRK00736 hypothetical protein; Provisional
Probab=40.57 E-value=1.2e+02 Score=22.26 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=7.2
Q ss_pred hHHHhhhhhHHHHHHHHH
Q 037795 195 SEIAASKSKVDVGNENIQ 212 (227)
Q Consensus 195 ~ei~~Lks~~~~~~e~~~ 212 (227)
.+|.+|+..+..+.+.+.
T Consensus 33 ~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 33 KTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 234
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=40.48 E-value=3.4e+02 Score=25.97 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=22.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 037795 165 QSKITVELDHVVKEIKMLEESKAKLTSK 192 (227)
Q Consensus 165 ~skle~~l~e~er~I~eLe~~~~~~~~~ 192 (227)
..|+-..|.++-.||-+|++.+..++..
T Consensus 182 ~~KF~~vLNeKK~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 182 YAKFVLVLNEKKAKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhcc
Confidence 4577788888889999999988887653
No 235
>PRK00295 hypothetical protein; Provisional
Probab=40.48 E-value=1.3e+02 Score=22.02 Aligned_cols=21 Identities=5% Similarity=-0.037 Sum_probs=9.1
Q ss_pred hhHHHhhhhhHHHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQNA 214 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~a 214 (227)
..+|.+|+..+..+.+.+.++
T Consensus 32 q~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 32 QRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444443
No 236
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=40.45 E-value=1.2e+02 Score=23.27 Aligned_cols=21 Identities=24% Similarity=0.653 Sum_probs=13.8
Q ss_pred HHHHHHHHhCCCchhhhHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCL 134 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL 134 (227)
+..+..|...||.+..++.-+
T Consensus 47 l~~I~~l~~~G~~l~ei~~~~ 67 (102)
T cd04775 47 LEKIVFLQAGGLPLEEIAGCL 67 (102)
T ss_pred HHHHHHHHHCCCCHHHHHHHH
Confidence 344555677788888777533
No 237
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=40.23 E-value=89 Score=22.34 Aligned_cols=20 Identities=5% Similarity=0.217 Sum_probs=9.4
Q ss_pred hhHHHhhhhhHHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQN 213 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ 213 (227)
-..+..++...+.+.+.+..
T Consensus 45 r~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 45 REKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444555555554443
No 238
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.09 E-value=4.3e+02 Score=27.12 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=36.8
Q ss_pred HhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 139 SIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 139 ~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
.++++-.+++..+++++.+..+-.-.++++..++.++|..|.-|+.+...
T Consensus 306 ~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~ 355 (622)
T COG5185 306 ALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDE 355 (622)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 36677777777888888887777777888887777777777766665544
No 239
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=39.97 E-value=1.2e+02 Score=23.27 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh---hhHHHhhhhhHHHHHHHHHHHH
Q 037795 172 LDHVVKEIKMLEESKAKLTSKN---ESEIAASKSKVDVGNENIQNAQ 215 (227)
Q Consensus 172 l~e~er~I~eLe~~~~~~~~~~---d~ei~~Lks~~~~~~e~~~~ae 215 (227)
-+++-+.|.+||..+..+.... -.|..+|+++-..+.+||.+.=
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888887764443 6778889999999999999873
No 240
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=39.86 E-value=62 Score=28.00 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=29.3
Q ss_pred HhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 037795 121 ESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHI 158 (227)
Q Consensus 121 E~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i 158 (227)
+..|||-.++..|..+|..+-.....-..+.+.+..++
T Consensus 123 ~A~GfdLsPL~~R~~El~~~a~~~~~~~~~~r~lr~~i 160 (177)
T PF03428_consen 123 EAFGFDLSPLIARAEELAALAEAARAERRALRRLRRRI 160 (177)
T ss_pred eEeCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999988777766655666665553
No 241
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=39.82 E-value=4.4e+02 Score=31.09 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=20.6
Q ss_pred HhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 139 SIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 139 ~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
.++.....+.....+++.+....+.+++++...+++....+.+++.
T Consensus 1052 ~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k 1097 (1930)
T KOG0161|consen 1052 DLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQK 1097 (1930)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333333344444444444444455555554444444444444443
No 242
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=39.39 E-value=2.1e+02 Score=23.35 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=40.1
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHH-hhhhhhHHHhhhhhHHHHHHHHHHHHHhH
Q 037795 161 QTSEQSKITVELDHVVKEIKMLEESKAKL-TSKNESEIAASKSKVDVGNENIQNAQLDF 218 (227)
Q Consensus 161 ~~~e~skle~~l~e~er~I~eLe~~~~~~-~~~~d~ei~~Lks~~~~~~e~~~~ae~eF 218 (227)
...-+++-+.++...+.++.+-+..++.- ....+-.|+.|+..+...-+..-++=+.+
T Consensus 44 ie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~~ki~~lk~~~~k~~~~Vv~~LL~~ 102 (108)
T KOG1772|consen 44 IEEYRSQREKEFKEKESAASGSQGALEKRLEQETDDKIAGLKTSAQKNSDDVVDMLLKY 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33445667777777877777766655543 33348889999988888887777766554
No 243
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=39.35 E-value=1.6e+02 Score=24.57 Aligned_cols=32 Identities=25% Similarity=0.151 Sum_probs=15.5
Q ss_pred HHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 157 HILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 157 ~i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
.|...+.-..+++.+++..|..|..|.+++..
T Consensus 88 li~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~ 119 (131)
T PF04859_consen 88 LIKTYEIVVKKLEAELRAKDSEIDRLREKLDE 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555554444
No 244
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=39.23 E-value=1.8e+02 Score=22.87 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=7.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 037795 167 KITVELDHVVKEIKMLEESKA 187 (227)
Q Consensus 167 kle~~l~e~er~I~eLe~~~~ 187 (227)
++..+++.++..|..+.++..
T Consensus 76 el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 76 ELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 245
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=39.19 E-value=75 Score=26.98 Aligned_cols=51 Identities=8% Similarity=0.147 Sum_probs=33.7
Q ss_pred HhHHhHHHHHHHHHHHHHHHhhhhhh--hhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 139 SIKEKHEQLQEQLLEYECHILEQTSE--QSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 139 ~lK~~~~~~~~~~k~le~~i~e~~~e--~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
-.+.++.++++++..|+..|.+-... +|--+..+..+|+.|.+|++.++.+
T Consensus 31 lT~~G~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~~A 83 (160)
T PRK06342 31 VTEAGLKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARRRTA 83 (160)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHccC
Confidence 34566667777777776655444322 3335677778889999999877664
No 246
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=39.19 E-value=42 Score=25.58 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhCCCchhhhHHHH
Q 037795 110 FNGMFEALLNLESHGFDVKTVHSCL 134 (227)
Q Consensus 110 fe~~~~tl~~LE~~GFdV~~l~sRL 134 (227)
-+.....+++.-.+|||++.++.-+
T Consensus 24 ~~dikdVyaEAK~~GfD~K~lr~ii 48 (74)
T PF10073_consen 24 SDDIKDVYAEAKGNGFDTKALRQII 48 (74)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3456678999999999999987543
No 247
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=39.14 E-value=1.1e+02 Score=22.32 Aligned_cols=21 Identities=10% Similarity=0.226 Sum_probs=7.9
Q ss_pred hhHHHhhhhhHHHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQNA 214 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~a 214 (227)
..+|.+|+..+..+.+.+.++
T Consensus 31 q~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 31 QRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444443
No 248
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=38.76 E-value=73 Score=31.88 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=50.1
Q ss_pred hhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 127 VKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 127 V~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
.+-+|+.|.+..+-+.+|.+.++..++++.++..-+++.+.|...+.+.|..=.-|.+||-.
T Consensus 250 LKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~k 311 (472)
T KOG0709|consen 250 LKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKK 311 (472)
T ss_pred HHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHH
Confidence 35678888889999999999999999999999999999988887777776665555555444
No 249
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=38.52 E-value=1.5e+02 Score=21.41 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHhCCCchhhhHHHHHHHHHh----HHhHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 037795 109 IFNGMFEALLNLESHGFDVKTVHSCLSEMQSI----KEKHEQLQEQLLEYECHILEQTSEQSKITVE 171 (227)
Q Consensus 109 ~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~l----K~~~~~~~~~~k~le~~i~e~~~e~skle~~ 171 (227)
.|....+.+.+|-..||+...+...|.+.+.- ...+.++...+-..+..+....++.-++.+-
T Consensus 19 ~~~~~~~~~~~l~~~G~s~~~Il~~l~~~l~~~~~~~~~k~~i~~~la~~e~rl~~G~~e~lQl~al 85 (89)
T PF08542_consen 19 DFKEARKKLYELLVEGYSASDILKQLHEVLVESDIPDSQKAEILKILAEIEYRLSDGASEILQLEAL 85 (89)
T ss_dssp CHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTSTSSHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHH
Confidence 67778888888888899999999999996665 2346677778888888888777776666554
No 250
>PF13166 AAA_13: AAA domain
Probab=38.50 E-value=3.6e+02 Score=26.98 Aligned_cols=6 Identities=17% Similarity=0.097 Sum_probs=2.9
Q ss_pred hhhhhh
Q 037795 50 ILRAIE 55 (227)
Q Consensus 50 ~W~~~E 55 (227)
.|..++
T Consensus 270 ~~~~l~ 275 (712)
T PF13166_consen 270 RKERLE 275 (712)
T ss_pred HHHHHH
Confidence 455444
No 251
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=38.47 E-value=2.4e+02 Score=25.10 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=34.8
Q ss_pred HHhhhhhhhhhhhhhh----HHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 157 HILEQTSEQSKITVEL----DHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 157 ~i~e~~~e~skle~~l----~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
+..++....+.++..+ ++.++.|..+++++..+......=-+.-+.+.-+.+..|.+.+.++...
T Consensus 83 ~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L~~~ 151 (196)
T PF15272_consen 83 QSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNERERERIAYESRIADLERQLNSR 151 (196)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444454444 5667777777777665433321111122345556777777777777643
No 252
>COG5162 Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=38.19 E-value=59 Score=28.65 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=38.5
Q ss_pred cCCCCCCCccccCCchhhhhHHHHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhH
Q 037795 62 KMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIK 141 (227)
Q Consensus 62 ~vPQ~PHF~pL~~~~e~~REg~A~Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK 141 (227)
-+-|-|||.- .++ -+|..+++.+....-=-|.+.... +|++.||++..+ |+++||.|-
T Consensus 60 N~~~~ph~~r---~Kd-----------ktlee~l~~mDsy~PliPd~v~DY------yl~k~Gf~~~D~--rvKkLl~L~ 117 (197)
T COG5162 60 NIKQHPHNPR---MKD-----------KTLEELLQNMDSYTPLIPDSVTDY------YLEKAGFVTSDQ--RVKKLLSLL 117 (197)
T ss_pred chhcCcCcch---hhH-----------HHHHHHHHhcccCCCCccHHHHHH------HHHhcCceeccH--HHHHHHHHH
Confidence 6678899873 222 245555665555544445556555 478999999875 688988864
Q ss_pred H
Q 037795 142 E 142 (227)
Q Consensus 142 ~ 142 (227)
.
T Consensus 118 a 118 (197)
T COG5162 118 A 118 (197)
T ss_pred H
Confidence 4
No 253
>PRK00736 hypothetical protein; Provisional
Probab=38.07 E-value=1.4e+02 Score=21.92 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 037795 151 LLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLT 190 (227)
Q Consensus 151 ~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~ 190 (227)
+..|+.++.-.+.-...|-..+-.-.+.|..|++++..+.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555444444444444444445555555555554443
No 254
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.82 E-value=3.4e+02 Score=29.51 Aligned_cols=86 Identities=13% Similarity=0.215 Sum_probs=44.8
Q ss_pred hhhhHHHHHH----HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh---h------
Q 037795 127 VKTVHSCLSE----MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK---N------ 193 (227)
Q Consensus 127 V~~l~sRL~k----LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~---~------ 193 (227)
..+++.||.+ |+.+--.+..+-+.+|..+.-...-+..++.|++.+.+.|-.+..++.++..+..+ +
T Consensus 488 i~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi 567 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDI 567 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455666655 33333333444444444443333334446667777766666666666665554211 1
Q ss_pred -hhHHHhhhhhHHHHHHHHH
Q 037795 194 -ESEIAASKSKVDVGNENIQ 212 (227)
Q Consensus 194 -d~ei~~Lks~~~~~~e~~~ 212 (227)
+..+..|+.+++.-.-+|+
T Consensus 568 ~n~qlkelk~~~~~q~lake 587 (1118)
T KOG1029|consen 568 FNNQLKELKEDVNSQQLAKE 587 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666655555
No 255
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=37.75 E-value=3e+02 Score=24.62 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=24.5
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHHHhHhhh
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFESVAVCL 225 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa~ 225 (227)
+.++-+++..++.+.+..+.++.+++..+..|
T Consensus 153 ~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l 184 (240)
T cd07672 153 VKQQEKLFAKLAQSKQNAEDADRLYMQNISVL 184 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788888888888888888887776554
No 256
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=37.74 E-value=4.4e+02 Score=27.10 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=25.5
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHH
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEI 179 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I 179 (227)
+|..-.+..+.+++++..|+.++.+..-|.+.+|++-..+
T Consensus 321 mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 321 MKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5555555566677777777777777777777666654433
No 257
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=37.68 E-value=1.7e+02 Score=21.72 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 146 QLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 146 ~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
.++++..+|-++-..+..-.-++.+.+.+.+..|.++..
T Consensus 16 ~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~ 54 (74)
T PF12329_consen 16 QLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKK 54 (74)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555444444444555555555444444443
No 258
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=37.65 E-value=2.6e+02 Score=23.84 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=40.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHHhHhh
Q 037795 162 TSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESVAVC 224 (227)
Q Consensus 162 ~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa 224 (227)
..+...++..+...++.|.+.+.+++.++.=.-..+..++.=.+.+.+.+.+.+.+-..+.++
T Consensus 53 ~r~~~~~~~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v~eLkeel~~el~~l~~~ 115 (146)
T PF05852_consen 53 LREECEIKNKVSSLETEISEKKKELSHLKKFDRKKVEDLEKLTDRVEELKEELEFELERLQSA 115 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444556777777788888888888888766445556655555555555555555555554433
No 259
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=37.55 E-value=4e+02 Score=26.06 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=13.5
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 195 SEIAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 195 ~ei~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
.|..+++-.++.+.++|..++.|=++
T Consensus 141 EEn~~lqlqL~~l~~e~~Ekeeesq~ 166 (401)
T PF06785_consen 141 EENQCLQLQLDALQQECGEKEEESQT 166 (401)
T ss_pred HHHHHHHHhHHHHHHHHhHhHHHHHH
Confidence 34455555555555555555444443
No 260
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=37.48 E-value=3.1e+02 Score=28.11 Aligned_cols=29 Identities=24% Similarity=0.177 Sum_probs=14.0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 160 EQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 160 e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
+...+...+.+++..++..+.+|+.++..
T Consensus 451 ~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 451 ELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444455555555555555554
No 261
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=37.43 E-value=1.2e+02 Score=23.00 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=14.2
Q ss_pred HHHHHHHhCCCchhhhHHHHH
Q 037795 115 EALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 115 ~tl~~LE~~GFdV~~l~sRL~ 135 (227)
..+..|...||.+..++.-+.
T Consensus 48 ~~i~~lr~~g~~l~~i~~~~~ 68 (103)
T cd01106 48 QQILFLKELGFSLKEIKELLK 68 (103)
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 344556778998887776554
No 262
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=37.33 E-value=1.8e+02 Score=22.04 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=29.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhh------hhhHHHhhhhhHHHHHHHHHHHH
Q 037795 168 ITVELDHVVKEIKMLEESKAKLTSK------NESEIAASKSKVDVGNENIQNAQ 215 (227)
Q Consensus 168 le~~l~e~er~I~eLe~~~~~~~~~------~d~ei~~Lks~~~~~~e~~~~ae 215 (227)
|...+.+++-.+.+|++.......+ -..||.+=+.=+.++...+.++|
T Consensus 44 L~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 44 LRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334444444455555544443222 17888888888888888888775
No 263
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=37.11 E-value=72 Score=24.61 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=10.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 037795 167 KITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 167 kle~~l~e~er~I~eLe~~~~~ 188 (227)
||..+|.....+|.++|..+-.
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~ 26 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKE 26 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445544444433
No 264
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=37.08 E-value=2.1e+02 Score=28.82 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=20.5
Q ss_pred cccCCCCCCCccccCCc---hhhhhHHHHHHHHHHHHHH
Q 037795 60 FQKMPQKPHFNLLDGSK---DMYLEGLVTGYMLTFANVV 95 (227)
Q Consensus 60 Fk~vPQ~PHF~pL~~~~---e~~REg~A~Glm~tF~~l~ 95 (227)
-.+.||+--=-.|+++. .+.|+.-.-++++.|.-++
T Consensus 288 VhRl~~~~~dGklve~~~~~~~~~~~~~~~~~~~~s~ll 326 (493)
T KOG0804|consen 288 VHRLPQSKTDGKLVESSTEGDDSRKDDCDSLELEYSPLL 326 (493)
T ss_pred hhhccccCCCCceEEeccccccccccCcceEEeecchhh
Confidence 34556665544444432 3336677777777777643
No 265
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=37.01 E-value=2.5e+02 Score=28.51 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 037795 174 HVVKEIKMLEESKAKLTSKNESEIAASK 201 (227)
Q Consensus 174 e~er~I~eLe~~~~~~~~~~d~ei~~Lk 201 (227)
++......++++++.++.....++.+|+
T Consensus 241 ~l~~~~~~~~~~~~~lk~ap~~D~~~L~ 268 (555)
T TIGR03545 241 DLQNDKKQLKADLAELKKAPQNDLKRLE 268 (555)
T ss_pred HHHHhHHHHHHHHHHHHhccHhHHHHHH
Confidence 3444444444444444444444444444
No 266
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=37.01 E-value=1.6e+02 Score=25.62 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 037795 145 EQLQEQLLEYECHILEQTSEQSKITVE 171 (227)
Q Consensus 145 ~~~~~~~k~le~~i~e~~~e~skle~~ 171 (227)
..+.+++.+++++++.++.++.+++..
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 267
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=36.94 E-value=5.1e+02 Score=27.06 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=35.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhh------------------hhhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 167 KITVELDHVVKEIKMLEESKAKLTSK------------------NESEIAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 167 kle~~l~e~er~I~eLe~~~~~~~~~------------------~d~ei~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
+..+.+...++.+..|.++++..++. ||++|++|-.++..++.+.....-.-...
T Consensus 246 ~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~q 318 (629)
T KOG0963|consen 246 DAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQ 318 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666664332 48888888888888877776655444433
No 268
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=36.80 E-value=2.1e+02 Score=27.50 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=6.3
Q ss_pred CCchhhhHHHHHH
Q 037795 124 GFDVKTVHSCLSE 136 (227)
Q Consensus 124 GFdV~~l~sRL~k 136 (227)
|++...++.++.+
T Consensus 326 g~~~~~l~~~~~~ 338 (451)
T PF03961_consen 326 GVDRPELKEKLEE 338 (451)
T ss_pred ecCcHHHHHHHHH
Confidence 5554444444443
No 269
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=36.77 E-value=3.2e+02 Score=29.05 Aligned_cols=119 Identities=19% Similarity=0.239 Sum_probs=65.8
Q ss_pred HHHhccc--CCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHH------------------HH
Q 037795 96 EQTSKLQ--VSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLE------------------YE 155 (227)
Q Consensus 96 e~v~~l~--idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~------------------le 155 (227)
=.+++++ +.++...-+..++-+..||+-- +.+| |+|=+++..-.+.-++.+. .+
T Consensus 513 ~elKk~qedi~~~k~qee~~~kqie~Lee~~---~~Lr---neles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~ 586 (786)
T PF05483_consen 513 LELKKQQEDINNSKKQEEKMLKQIENLEETN---TQLR---NELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKE 586 (786)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhH
Confidence 3344443 3344555556666677776531 1222 4444555544443333333 22
Q ss_pred HHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh---hhHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 156 CHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN---ESEIAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 156 ~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~---d~ei~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
++|.-.......+...+....+.|.+|+++--+++.+. .+.+..+...++..+.++++++..|.-
T Consensus 587 kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE 654 (786)
T PF05483_consen 587 KQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEE 654 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 22333333344555555566677778887766665543 666677777778888888887777653
No 270
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=36.72 E-value=2e+02 Score=22.44 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=19.2
Q ss_pred hCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 037795 122 SHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYEC 156 (227)
Q Consensus 122 ~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~ 156 (227)
....++..++.++..|..-........+.++.++.
T Consensus 10 ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~ 44 (126)
T TIGR00293 10 ILQQQVESLQAQIAALRALIAELETAIETLEDLKG 44 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444556666666665555555555555555543
No 271
>PRK00106 hypothetical protein; Provisional
Probab=36.72 E-value=4.1e+02 Score=26.99 Aligned_cols=8 Identities=13% Similarity=0.605 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 037795 85 TGYMLTFA 92 (227)
Q Consensus 85 ~Glm~tF~ 92 (227)
+|+...|.
T Consensus 13 ~~~~~~~~ 20 (535)
T PRK00106 13 IGLVIGYV 20 (535)
T ss_pred HHHHHHHH
Confidence 45544444
No 272
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=36.66 E-value=2.5e+02 Score=24.44 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=15.8
Q ss_pred HhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 037795 158 ILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK 192 (227)
Q Consensus 158 i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~ 192 (227)
+.........+...++++...|.+|++++...+.+
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444555555544444333
No 273
>PF15294 Leu_zip: Leucine zipper
Probab=36.64 E-value=3.5e+02 Score=25.33 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=36.5
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhh---------hhhhhhHHHHHHHHHHHHHHHHH
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQS---------KITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~s---------kle~~l~e~er~I~eLe~~~~~~ 189 (227)
|.++....+..+++.++++.++.+...... --.+.+.++|.+++.++-++...
T Consensus 148 l~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 148 LKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 455666777777788888877777776322 23456777888888877776664
No 274
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=36.60 E-value=2.1e+02 Score=27.61 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=46.5
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHH----------HHHHHHHHHhhhh---hhHHHhhhhhHHH
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIK----------MLEESKAKLTSKN---ESEIAASKSKVDV 206 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~----------eLe~~~~~~~~~~---d~ei~~Lks~~~~ 206 (227)
|+.+..-++++-|=|++--..+-.|..+|-+-+.++|..|+ ..|+|...+.+.+ +-|+++-|+-++.
T Consensus 12 L~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELARaKV~aNR 91 (351)
T PF07058_consen 12 LMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELARAKVSANR 91 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 44555556666666666666666777788888777777776 4566666665554 8888888877765
Q ss_pred H
Q 037795 207 G 207 (227)
Q Consensus 207 ~ 207 (227)
+
T Consensus 92 V 92 (351)
T PF07058_consen 92 V 92 (351)
T ss_pred h
Confidence 4
No 275
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=36.59 E-value=2.8e+02 Score=23.94 Aligned_cols=10 Identities=30% Similarity=0.322 Sum_probs=4.6
Q ss_pred hhHHHhhhhh
Q 037795 194 ESEIAASKSK 203 (227)
Q Consensus 194 d~ei~~Lks~ 203 (227)
..+|..||..
T Consensus 169 ~~ei~~lk~~ 178 (189)
T PF10211_consen 169 QEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 276
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=36.55 E-value=2.8e+02 Score=25.92 Aligned_cols=22 Identities=14% Similarity=0.369 Sum_probs=12.8
Q ss_pred hCCCchhhhHHHHHHHHH-hHHh
Q 037795 122 SHGFDVKTVHSCLSEMQS-IKEK 143 (227)
Q Consensus 122 ~~GFdV~~l~sRL~kLL~-lK~~ 143 (227)
.....|+-|++++-+|-. |+|.
T Consensus 13 d~rL~v~~LhHQvlTLqcQLRDQ 35 (277)
T PF15030_consen 13 DLRLRVQQLHHQVLTLQCQLRDQ 35 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777643 4443
No 277
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=36.32 E-value=3.4e+02 Score=24.79 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhh
Q 037795 145 EQLQEQLLEYECHILEQTSEQSKIT 169 (227)
Q Consensus 145 ~~~~~~~k~le~~i~e~~~e~skle 169 (227)
..+..+++.++..-.+..+-+++++
T Consensus 121 k~I~K~RkkLe~~RLD~D~~K~r~~ 145 (246)
T cd07618 121 PNIQKQRKQLAKLVLDWDSARGRYN 145 (246)
T ss_pred HHHHHHHHHHHhHHhhHHHHHHHHH
Confidence 4555566666666666555666553
No 278
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=36.23 E-value=1.3e+02 Score=22.37 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=23.6
Q ss_pred HHHHHHHHh-CCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037795 114 FEALLNLES-HGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECH 157 (227)
Q Consensus 114 ~~tl~~LE~-~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~ 157 (227)
+..+..|.. .||+...++.-|. ++++...+..++..+.++
T Consensus 47 l~~i~~L~~d~g~~l~~i~~~l~----l~~~~~~l~~~l~~l~~~ 87 (91)
T cd04766 47 LRRIQRLTQELGVNLAGVKRILE----LEEELAELRAELDELRAR 87 (91)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 455667776 8998887755443 555555554444444443
No 279
>PTZ00464 SNF-7-like protein; Provisional
Probab=36.09 E-value=2.7e+02 Score=24.73 Aligned_cols=10 Identities=10% Similarity=0.023 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 037795 149 EQLLEYECHI 158 (227)
Q Consensus 149 ~~~k~le~~i 158 (227)
+..+-++++|
T Consensus 25 ~r~~~l~kKi 34 (211)
T PTZ00464 25 GRSEVVDARI 34 (211)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 280
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=36.07 E-value=92 Score=26.16 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 037795 175 VVKEIKMLEESK 186 (227)
Q Consensus 175 ~er~I~eLe~~~ 186 (227)
++|++.+++.++
T Consensus 71 l~Rk~~kl~~el 82 (161)
T PF04420_consen 71 LNRKLDKLEEEL 82 (161)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 281
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=35.98 E-value=3.5e+02 Score=24.92 Aligned_cols=39 Identities=8% Similarity=0.228 Sum_probs=17.5
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHH
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHV 175 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~ 175 (227)
||.+--.+.+....|.-|+.+++.+.....+|+-.+++-
T Consensus 62 llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~a 100 (272)
T KOG4552|consen 62 LLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSA 100 (272)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444433
No 282
>PRK02793 phi X174 lysis protein; Provisional
Probab=35.84 E-value=1.6e+02 Score=21.82 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=7.2
Q ss_pred HHHhhhhhHHHHHHHHHH
Q 037795 196 EIAASKSKVDVGNENIQN 213 (227)
Q Consensus 196 ei~~Lks~~~~~~e~~~~ 213 (227)
+|.+|+..+..+.+.+.+
T Consensus 37 ~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 37 EMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444444444333333
No 283
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=35.58 E-value=1.3e+02 Score=28.85 Aligned_cols=9 Identities=33% Similarity=0.534 Sum_probs=4.8
Q ss_pred hhhcccCCC
Q 037795 57 MGVFQKMPQ 65 (227)
Q Consensus 57 meVFk~vPQ 65 (227)
+||=|-.||
T Consensus 198 lEvERV~Pq 206 (359)
T PF10498_consen 198 LEVERVLPQ 206 (359)
T ss_pred HHHHHHhhh
Confidence 455555555
No 284
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=35.45 E-value=1.4e+02 Score=23.43 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCchhhhHHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL~ 135 (227)
+..+..|...||.+..++.-++
T Consensus 46 l~~I~~lr~~G~~L~eI~~~l~ 67 (120)
T cd04781 46 LALIALGRAAGFSLDEIQAMLS 67 (120)
T ss_pred HHHHHHHHHcCCCHHHHHHHHh
Confidence 3456778888999888776554
No 285
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=35.42 E-value=3.1e+02 Score=29.19 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=7.6
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 037795 168 ITVELDHVVKEIKMLEES 185 (227)
Q Consensus 168 le~~l~e~er~I~eLe~~ 185 (227)
++..+|..+++|..|+.+
T Consensus 383 l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 383 LRDMLDKKERKINVLQKK 400 (775)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 286
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=35.05 E-value=2.7e+02 Score=24.50 Aligned_cols=24 Identities=29% Similarity=0.291 Sum_probs=11.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHH
Q 037795 162 TSEQSKITVELDHVVKEIKMLEES 185 (227)
Q Consensus 162 ~~e~skle~~l~e~er~I~eLe~~ 185 (227)
+.+-.++...-..-|.+|.+|+++
T Consensus 126 E~E~~rLt~~Q~~ae~Ki~~LE~K 149 (178)
T PF14073_consen 126 EKEYLRLTATQSLAETKIKELEEK 149 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555554
No 287
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=34.98 E-value=4.6e+02 Score=25.91 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhcccC--CCchhhHHHHHHHHHHHH
Q 037795 85 TGYMLTFANVVEQTSKLQV--SDPTSIFNGMFEALLNLE 121 (227)
Q Consensus 85 ~Glm~tF~~l~e~v~~l~i--dD~~s~fe~~~~tl~~LE 121 (227)
--+-.+|-++...++...+ +++.+.+.+....+..|.
T Consensus 226 ~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~ 264 (582)
T PF09731_consen 226 QELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQ 264 (582)
T ss_pred HHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHH
Confidence 3445566677667766666 666666655555554444
No 288
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=34.90 E-value=4.6e+02 Score=27.69 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=11.9
Q ss_pred HHHhCCCchhhhHHHHHHHHH
Q 037795 119 NLESHGFDVKTVHSCLSEMQS 139 (227)
Q Consensus 119 ~LE~~GFdV~~l~sRL~kLL~ 139 (227)
+++.-|=-+-..+.++-+|+.
T Consensus 455 e~~t~gsA~ed~Qeqn~kL~~ 475 (698)
T KOG0978|consen 455 EMETIGSAFEDMQEQNQKLLQ 475 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555566666666554
No 289
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=34.57 E-value=1.7e+02 Score=22.46 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=11.5
Q ss_pred HHHHHHhCCCchhhhHH
Q 037795 116 ALLNLESHGFDVKTVHS 132 (227)
Q Consensus 116 tl~~LE~~GFdV~~l~s 132 (227)
.+..|...||.+...+.
T Consensus 49 ~I~~l~~~G~~l~ei~~ 65 (102)
T cd04789 49 LIQQLQAGGLSLKECLA 65 (102)
T ss_pred HHHHHHHCCCCHHHHHH
Confidence 45557777888876554
No 290
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=34.55 E-value=2.1e+02 Score=23.56 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=15.2
Q ss_pred HHHHHHHHhCCCchhhhHHHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCLSE 136 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL~k 136 (227)
+..+..|...||.+..++.=|+.
T Consensus 47 l~~I~~lr~~G~sL~eI~~~l~~ 69 (142)
T TIGR01950 47 VAVIKAAQRVGIPLATIGEALAV 69 (142)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHh
Confidence 34556677889988876655543
No 291
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=34.48 E-value=2.1e+02 Score=23.30 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=13.8
Q ss_pred HHHHHHHHhCCCchhhhHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCL 134 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL 134 (227)
+..+..|...||.+..++.-|
T Consensus 48 l~~I~~lr~~G~sL~eI~~~l 68 (140)
T PRK09514 48 LRFIRRAKQLGFTLEEIRELL 68 (140)
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 344556777888887766544
No 292
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=34.47 E-value=2.3e+02 Score=22.42 Aligned_cols=21 Identities=14% Similarity=0.368 Sum_probs=13.4
Q ss_pred HHHHHHHHhCCCchhhhHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCL 134 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL 134 (227)
+..+..|...||....++.-|
T Consensus 47 l~~I~~lr~~G~sL~eI~~~l 67 (126)
T cd04785 47 LRFIRRARDLGFSLEEIRALL 67 (126)
T ss_pred HHHHHHHHHCCCCHHHHHHHH
Confidence 345556778888877755433
No 293
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=34.46 E-value=1.7e+02 Score=20.93 Aligned_cols=55 Identities=22% Similarity=0.213 Sum_probs=32.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHhHH
Q 037795 162 TSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFE 219 (227)
Q Consensus 162 ~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~ 219 (227)
......++..|++.+..|.+++-+.-.+ -.++-..++..+..+...+...+.+|.
T Consensus 24 ~~~i~~~e~~l~ea~~~l~qMe~E~~~~---p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 24 KSLIREIERDLDEAEELLKQMELEVRSL---PPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455556666655555555532211 235567777777777777777777764
No 294
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=34.40 E-value=1.2e+02 Score=28.98 Aligned_cols=10 Identities=30% Similarity=0.906 Sum_probs=3.0
Q ss_pred HhCCCchhhh
Q 037795 121 ESHGFDVKTV 130 (227)
Q Consensus 121 E~~GFdV~~l 130 (227)
+.+||.++..
T Consensus 208 ~R~~f~~r~~ 217 (406)
T PF02388_consen 208 ERKGFSIRSL 217 (406)
T ss_dssp HHTT-----H
T ss_pred hhCCCcccCH
Confidence 4578887643
No 295
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=34.40 E-value=3e+02 Score=23.57 Aligned_cols=10 Identities=20% Similarity=0.541 Sum_probs=4.3
Q ss_pred CCchhhHHHH
Q 037795 104 SDPTSIFNGM 113 (227)
Q Consensus 104 dD~~s~fe~~ 113 (227)
.||...++-+
T Consensus 22 EDP~~~l~q~ 31 (221)
T PF04012_consen 22 EDPEKMLEQA 31 (221)
T ss_pred cCHHHHHHHH
Confidence 3444444433
No 296
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=34.25 E-value=2.5e+02 Score=22.60 Aligned_cols=88 Identities=14% Similarity=0.239 Sum_probs=52.9
Q ss_pred hhHHHHHHHHH-hHHhHHHHHHHHHHHHHHHhhhhhh---hhhhhhhhHHHHHHHHHHHHHHHHHhhhh-------hhHH
Q 037795 129 TVHSCLSEMQS-IKEKHEQLQEQLLEYECHILEQTSE---QSKITVELDHVVKEIKMLEESKAKLTSKN-------ESEI 197 (227)
Q Consensus 129 ~l~sRL~kLL~-lK~~~~~~~~~~k~le~~i~e~~~e---~skle~~l~e~er~I~eLe~~~~~~~~~~-------d~ei 197 (227)
....++..+.. ++.......+.-.+++..+.-|... ++.++..+.+....|.+|+.+...++..- ..+=
T Consensus 21 ~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk 100 (132)
T PF07926_consen 21 DAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQK 100 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34444444332 5555555666666666666555544 55677777777777887777766654432 4445
Q ss_pred HhhhhhHHHHHHHHHHHHH
Q 037795 198 AASKSKVDVGNENIQNAQL 216 (227)
Q Consensus 198 ~~Lks~~~~~~e~~~~ae~ 216 (227)
..|+.+++.++..|.+...
T Consensus 101 ~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666543
No 297
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=34.10 E-value=1.7e+02 Score=26.17 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcccCCCchhhHHHHHH----HHHHHHhCCCchhhhHH----HHHHHHHhHHhHH---------------
Q 037795 89 LTFANVVEQTSKLQVSDPTSIFNGMFE----ALLNLESHGFDVKTVHS----CLSEMQSIKEKHE--------------- 145 (227)
Q Consensus 89 ~tF~~l~e~v~~l~idD~~s~fe~~~~----tl~~LE~~GFdV~~l~s----RL~kLL~lK~~~~--------------- 145 (227)
..|..++++ ..||...++-++. .|..+...==.|..-+. +++++......+.
T Consensus 13 a~~~~~~dk-----~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LA 87 (225)
T COG1842 13 ANINELLDK-----AEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLA 87 (225)
T ss_pred HHHHHHHHh-----hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 344445554 4677777776664 34444443333333333 3333333222221
Q ss_pred -HHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 037795 146 -QLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN 193 (227)
Q Consensus 146 -~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~ 193 (227)
+.+.+...++..+..+..+...+.+..+.+.+.|..|+++.+.++.++
T Consensus 88 r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~ 136 (225)
T COG1842 88 REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKK 136 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134556667777788888888888888888888888888888877765
No 298
>PF07587 PSD1: Protein of unknown function (DUF1553); InterPro: IPR022655 The function is not known. It is found associated with IPR011444 from INTERPRO It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=34.06 E-value=34 Score=30.82 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=32.0
Q ss_pred HHHHHHhcccC-CCchhhHHHHHHH-HHHHHhCCCchhhhHHHHHH
Q 037795 93 NVVEQTSKLQV-SDPTSIFNGMFEA-LLNLESHGFDVKTVHSCLSE 136 (227)
Q Consensus 93 ~l~e~v~~l~i-dD~~s~fe~~~~t-l~~LE~~GFdV~~l~sRL~k 136 (227)
++|+.+.++.. .++.+- .++++. ..++-+||||+|+|+..|..
T Consensus 34 GlV~p~dD~g~~~~~Psh-PeLLd~La~~F~~~g~dlK~L~R~I~~ 78 (266)
T PF07587_consen 34 GLVEPVDDFGPQGNPPSH-PELLDWLAAEFVEHGWDLKHLIRLIVT 78 (266)
T ss_pred cCcCCHhhccCCCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 68888888888 555543 445554 35788999999999988764
No 299
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.03 E-value=3.5e+02 Score=24.26 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhccc
Q 037795 88 MLTFANVVEQTSKLQ 102 (227)
Q Consensus 88 m~tF~~l~e~v~~l~ 102 (227)
+.+|..++.++..+.
T Consensus 69 ~~~W~~lL~qt~~~a 83 (241)
T cd07656 69 VNCWNTLLVQTKQES 83 (241)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888887776543
No 300
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=34.01 E-value=2e+02 Score=21.38 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 150 QLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 150 ~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
-.|+|..++.+.+.....+...+.+.+..+..|++
T Consensus 34 ~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 301
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=33.91 E-value=2.5e+02 Score=22.57 Aligned_cols=21 Identities=14% Similarity=0.368 Sum_probs=9.1
Q ss_pred hhHHHhhhhhHHHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQNA 214 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~a 214 (227)
..+|..|+..++.+...+...
T Consensus 72 ~~~~~~l~~~~~~a~~~l~~~ 92 (132)
T PF07926_consen 72 QQEINELKAEAESAKAELEES 92 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 302
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=33.81 E-value=6.1e+02 Score=27.02 Aligned_cols=47 Identities=13% Similarity=0.187 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 143 KHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 143 ~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
....+..+...++..+...+.....+...+.+.+..|.+|+-++..+
T Consensus 597 elE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ 643 (769)
T PF05911_consen 597 ELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESA 643 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444455556666777777777777777764
No 303
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=33.64 E-value=3.3e+02 Score=23.82 Aligned_cols=55 Identities=16% Similarity=0.295 Sum_probs=31.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhh-hhhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 167 KITVELDHVVKEIKMLEESKAKLTSK-NESEIAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 167 kle~~l~e~er~I~eLe~~~~~~~~~-~d~ei~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
++-......+..+...+.++++++.. +...+..++.++..++.....++.+|+.|
T Consensus 120 ~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~i 175 (224)
T cd07623 120 KVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEI 175 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444322 12357777778888888888888888776
No 304
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=33.59 E-value=2.5e+02 Score=22.96 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 176 VKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 176 er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
=++|.+++++++++...++.+|++++...+.-.+.+++-...|++
T Consensus 9 l~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~ 53 (149)
T PF07352_consen 9 LRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEG 53 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777766666666666665555554444444444443
No 305
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.53 E-value=5.9e+02 Score=26.73 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=11.1
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQNAQL 216 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~ 216 (227)
-+|+.+++.....+...++.++.
T Consensus 638 ~~EL~~~~~~l~~l~~si~~lk~ 660 (717)
T PF10168_consen 638 KKELERMKDQLQDLKASIEQLKK 660 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444444433
No 306
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=33.49 E-value=2.6e+02 Score=22.77 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=13.4
Q ss_pred HHHHHHHhCCCchhhhHHHHH
Q 037795 115 EALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 115 ~tl~~LE~~GFdV~~l~sRL~ 135 (227)
..+..|...||.+..++.-|+
T Consensus 48 ~~I~~lr~~G~sl~eI~~~l~ 68 (135)
T PRK10227 48 TLLRQARQVGFNLEESGELVN 68 (135)
T ss_pred HHHHHHHHCCCCHHHHHHHHH
Confidence 345566777888777655443
No 307
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=33.41 E-value=1.3e+02 Score=30.07 Aligned_cols=21 Identities=19% Similarity=0.072 Sum_probs=13.5
Q ss_pred hhHHHhhhhhHHHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQNA 214 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~a 214 (227)
..+|.+||.+..+++++|-..
T Consensus 54 E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 54 ELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666543
No 308
>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....
Probab=33.35 E-value=61 Score=26.62 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHH----hHHHHHHHHHHHH
Q 037795 88 MLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKE----KHEQLQEQLLEYE 155 (227)
Q Consensus 88 m~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~----~~~~~~~~~k~le 155 (227)
-++|..+|....+ .. +...++ ..||++||+|- .||.+.+..+. +-.+.++-++-+-
T Consensus 3 ~~l~~e~V~~~~~-~~--~~~e~~------~~Le~~G~~vG---~rl~E~~~~~~~~~~r~~~~~~~~~fI~ 62 (152)
T PF04051_consen 3 ALLFGEMVQYLLR-RE--DVEEVN------KRLERMGYNVG---QRLAERLLRRRKNSPRFTDILDILKFIC 62 (152)
T ss_dssp HHHHHHHHHHHHH-CS--SHHHHH------HHHHHHHHHHH---HHHHHHHHHHCSSTCSTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hC--CHHHHH------HHHHHHHHHHh---HHHHHHHHHHhccCcccCCHHHHHHHHH
Confidence 4677788887777 33 333333 88999999998 68999888882 4444444444443
No 309
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=33.26 E-value=2.1e+02 Score=23.19 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=14.5
Q ss_pred HHHHHHHHhCCCchhhhHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCL 134 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL 134 (227)
+..+..|...||.+..++.-|
T Consensus 47 l~~I~~lr~~GfsL~eI~~ll 67 (131)
T cd04786 47 LEIISSAQQAGFSLDEIRQLL 67 (131)
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 445566788899887766543
No 310
>COG5293 Predicted ATPase [General function prediction only]
Probab=33.21 E-value=5.5e+02 Score=26.31 Aligned_cols=174 Identities=13% Similarity=0.093 Sum_probs=82.3
Q ss_pred hhhhhhhcccCCCCCCCcc-ccCC-chhhh----hHHHHHHHHHHHHHHHHHhcccCCCchhhHHHHHH-HHHHHHhCCC
Q 037795 53 AIEPMGVFQKMPQKPHFNL-LDGS-KDMYL----EGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFE-ALLNLESHGF 125 (227)
Q Consensus 53 ~~EsmeVFk~vPQ~PHF~p-L~~~-~e~~R----Eg~A~Glm~tF~~l~e~v~~l~idD~~s~fe~~~~-tl~~LE~~GF 125 (227)
.-+++.-|..+-|+||=.- ++++ .+.+- +-+..-.-+-|..+--++.++-+-|.+..|=+-.- -|-.+-+.-|
T Consensus 243 k~~tln~f~~~a~~y~e~ee~vn~v~~~I~e~~n~~i~~q~~~~~~~~slk~~~~~~pd~i~~~ye~vg~~fpg~Vkk~~ 322 (591)
T COG5293 243 KQATLNTFDFHAQDYAETEELVNTVDERIAELNNRRISMQSHWKRVKTSLKEQILFCPDEIQVLYEEVGVLFPGQVKKDF 322 (591)
T ss_pred HHHHHhhhccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcchhhccCChHHHHHHHHHhhhcChHHHHHhH
Confidence 3345556777888887432 2221 11222 23344445556666666666666666554432221 2222222233
Q ss_pred c-hhhhHHHHHHHHH--hHHhHHHHHHHHHHHHHHHhhhhhhhhh----------------hhhhhHHHHHHHHHHHHHH
Q 037795 126 D-VKTVHSCLSEMQS--IKEKHEQLQEQLLEYECHILEQTSEQSK----------------ITVELDHVVKEIKMLEESK 186 (227)
Q Consensus 126 d-V~~l~sRL~kLL~--lK~~~~~~~~~~k~le~~i~e~~~e~sk----------------le~~l~e~er~I~eLe~~~ 186 (227)
+ |+.+..+|.+=.. +++..+++++.+|++..++.+++.++.. +-+++..++..++|++-..
T Consensus 323 e~v~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~ri 402 (591)
T COG5293 323 EHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRI 402 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 2 5556666655332 5666666666666666665555544321 1222222333333333332
Q ss_pred HHHhhh--hhhHHHhhhhhHHHHHHHHHHHHHhHHHhHhhhC
Q 037795 187 AKLTSK--NESEIAASKSKVDVGNENIQNAQLDFESVAVCLG 226 (227)
Q Consensus 187 ~~~~~~--~d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa~~ 226 (227)
.-++.. .+.-|..+|-+.=..++.+-+-..+-.++++.+|
T Consensus 403 e~l~k~~~~~~~i~~lkhe~l~~~~r~y~e~q~q~~~~~~~~ 444 (591)
T COG5293 403 EPLRKLHALDQYIGTLKHECLDLEERIYTEVQQQCSLFASIG 444 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 223222 2555666655544444444444444445555444
No 311
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.13 E-value=4.2e+02 Score=25.84 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=28.6
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
||.....+....++++...+.++.++..+..++|-..+++.|..+
T Consensus 237 lkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~ 281 (365)
T KOG2391|consen 237 LKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALE 281 (365)
T ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 444455555555566666666666777777777777777777433
No 312
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=33.07 E-value=4.8e+02 Score=28.41 Aligned_cols=100 Identities=18% Similarity=0.204 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCchhh-HHHHHHHHHHHHhCCCchhhhHHHHHH-HHHh-HHhHHHHHHHHHHHHHHHh
Q 037795 83 LVTGYMLTFANVVEQTSKLQVSDPTSI-FNGMFEALLNLESHGFDVKTVHSCLSE-MQSI-KEKHEQLQEQLLEYECHIL 159 (227)
Q Consensus 83 ~A~Glm~tF~~l~e~v~~l~idD~~s~-fe~~~~tl~~LE~~GFdV~~l~sRL~k-LL~l-K~~~~~~~~~~k~le~~i~ 159 (227)
+.-||..++.++=+-|.-.+-.++... -..+ .+..||+-.....-|+- |.+| +..+.++++|.++|.++|.
T Consensus 390 i~eGl~~a~~~id~vi~~ir~s~~~~~a~~~l------~~~f~~s~~qa~aIl~mrL~~Lt~le~~kl~~E~~eL~~~I~ 463 (957)
T PRK13979 390 IVEGFIKAIGIMDEIIKTIRSSKSKKDASENL------IEKFGFTDEQAEAILELMLYRLTGLEIVAFEKEYKELEKLIK 463 (957)
T ss_pred HHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHH------HHHhCCCHHHHHHHHhCcHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 345666666554333333332222222 2222 23346654444433332 2222 4456777888888888888
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 160 EQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 160 e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
+.+.-+..-.....-+-..+.+++.+.+-
T Consensus 464 ~l~~iL~~~~~l~~vi~~EL~eik~kygd 492 (957)
T PRK13979 464 KLTKILSSEKELLKVIKKELKEVKEKYGD 492 (957)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 88877777777766676666666666664
No 313
>PRK04325 hypothetical protein; Provisional
Probab=32.97 E-value=1.8e+02 Score=21.57 Aligned_cols=15 Identities=0% Similarity=0.129 Sum_probs=5.7
Q ss_pred HHhhhhhHHHHHHHH
Q 037795 197 IAASKSKVDVGNENI 211 (227)
Q Consensus 197 i~~Lks~~~~~~e~~ 211 (227)
|.+|+..+..+.+.+
T Consensus 39 I~~L~~ql~~L~~rl 53 (74)
T PRK04325 39 LDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 314
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=32.83 E-value=2.3e+02 Score=21.79 Aligned_cols=7 Identities=14% Similarity=-0.007 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 037795 150 QLLEYEC 156 (227)
Q Consensus 150 ~~k~le~ 156 (227)
.+..|+.
T Consensus 16 aid~LE~ 22 (89)
T PF13747_consen 16 AIDRLEK 22 (89)
T ss_pred HHHHHHH
Confidence 3333333
No 315
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.79 E-value=3.5e+02 Score=24.96 Aligned_cols=19 Identities=11% Similarity=-0.053 Sum_probs=10.4
Q ss_pred CchhhhhHHHHHHHHHHHH
Q 037795 75 SKDMYLEGLVTGYMLTFAN 93 (227)
Q Consensus 75 ~~e~~REg~A~Glm~tF~~ 93 (227)
-+...+|.+++|..-+=.+
T Consensus 5 ~~~~~~et~l~l~d~~~~~ 23 (246)
T KOG4657|consen 5 GGDTTKETMLSLGDICEKD 23 (246)
T ss_pred cccchhHHHHHhHHHHHHH
Confidence 3455666666665544333
No 316
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.54 E-value=4.4e+02 Score=26.56 Aligned_cols=99 Identities=17% Similarity=0.156 Sum_probs=52.7
Q ss_pred HHHHHHhCCCchhhhHHHHHHHHH-hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 037795 116 ALLNLESHGFDVKTVHSCLSEMQS-IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNE 194 (227)
Q Consensus 116 tl~~LE~~GFdV~~l~sRL~kLL~-lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d 194 (227)
+-.+|..+|-+--.|+.-|.+|.- +|.-+.+ +..+..+=+.+..|..+|.+.-..++..|.. .+...+....
T Consensus 43 tpee~kalGiegDTP~DTlrTlva~~k~~r~~----~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~---av~~~~~~~~ 115 (472)
T TIGR03752 43 SPEELKALGIEGDTPADTLRTLVAEVKELRKR----LAKLISENEALKAENERLQKREQSIDQQIQQ---AVQSETQELT 115 (472)
T ss_pred CcchhHhcCCCCCCccchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HHHhhhHHHH
Confidence 344567888888888877777553 3333332 2233333333344444555554445444432 2222233335
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 195 SEIAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 195 ~ei~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
.++.+|+.+.......+++...++..+
T Consensus 116 ~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 116 KEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566667777667767777766666544
No 317
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=32.49 E-value=4.6e+02 Score=25.17 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=13.0
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHh
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLD 217 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~e 217 (227)
..+|...+.....++..+..++..
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a~~~ 313 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSLKED 313 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555444
No 318
>PRK02793 phi X174 lysis protein; Provisional
Probab=32.41 E-value=1.9e+02 Score=21.39 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 150 QLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 150 ~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
.+.+|+.++.-.+.-...|-..+-.-.+.|..|++++..+
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443
No 319
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=32.25 E-value=1.4e+02 Score=28.14 Aligned_cols=48 Identities=25% Similarity=0.310 Sum_probs=28.7
Q ss_pred HHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 141 KEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 141 K~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
||....+.+.+-.+++++.++..+..++++.++.+...+.+|+.++..
T Consensus 118 kd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 118 KDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555666666777777777777777666543
No 320
>PHA03152 hypothetical protein; Provisional
Probab=32.10 E-value=61 Score=27.46 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=30.6
Q ss_pred hCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhh
Q 037795 122 SHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILE 160 (227)
Q Consensus 122 ~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e 160 (227)
.|||||..+--++-+-+.+.....++++.+.-++....+
T Consensus 78 aNGFNv~SFliAVL~rl~~~~ee~~lln~l~~l~~sf~s 116 (138)
T PHA03152 78 SNGFNVISFLLAVLKKLPLNAEEQNFKNHLITLQNSFLS 116 (138)
T ss_pred cCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 589999999888888888777777787777777766443
No 321
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=32.09 E-value=3.2e+02 Score=23.31 Aligned_cols=7 Identities=29% Similarity=0.539 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 037795 87 YMLTFAN 93 (227)
Q Consensus 87 lm~tF~~ 93 (227)
.+++|.-
T Consensus 16 ~iI~FlI 22 (155)
T PRK06569 16 LIVTFGL 22 (155)
T ss_pred HHHHHHH
Confidence 3334433
No 322
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=31.79 E-value=75 Score=25.39 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=4.8
Q ss_pred hCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhh----hhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 037795 122 SHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSE----QSKITVELDHVVKEIKMLEESKAKLTS 191 (227)
Q Consensus 122 ~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e----~skle~~l~e~er~I~eLe~~~~~~~~ 191 (227)
...|||-.+......=.+|.+=+..+....+.+++.+.+.-.. --++...+..++..|.+++..+...+.
T Consensus 10 ~~~Fd~d~Fl~~~~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~ 83 (133)
T PF06148_consen 10 KPDFDVDEFLSSNRRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFRE 83 (133)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHH
T ss_pred CCCCCHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 3789998887765555566666666666666666664443332 334455555555555555555444433
No 323
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.73 E-value=5.6e+02 Score=25.91 Aligned_cols=121 Identities=13% Similarity=0.193 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCC--chhhhHHHHHHHHH-hHHhHHHHHHHHHHHHHHHhhhhh
Q 037795 87 YMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGF--DVKTVHSCLSEMQS-IKEKHEQLQEQLLEYECHILEQTS 163 (227)
Q Consensus 87 lm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GF--dV~~l~sRL~kLL~-lK~~~~~~~~~~k~le~~i~e~~~ 163 (227)
||++--.+.+++++|+-++ +...+-..|+-.-= .|..+.+-...|-. ++-.++.+..++...+-.-+....
T Consensus 368 lv~a~e~i~~e~~rl~q~n------d~l~~~~~l~t~~Qq~e~~~lp~ave~l~ql~~~~r~~~~~~l~a~ehv~e~l~~ 441 (542)
T KOG0993|consen 368 LVVASETIADEDSRLRQIN------DLLTTVGELETQVQQAEVQNLPAAVEQLAQLYKQRRTSLQQELDASEHVQEDLVK 441 (542)
T ss_pred HHHHHHHHHHHHHHHHHHH------HhhhhccccccchhHhhhhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5555556666666655332 23333333332211 34444455555444 344445555444444333333333
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhh---hhhHHHhhhhhHHHHHHHHHH
Q 037795 164 EQSKITVELDHVVKEIKMLEESKAKLTSK---NESEIAASKSKVDVGNENIQN 213 (227)
Q Consensus 164 e~skle~~l~e~er~I~eLe~~~~~~~~~---~d~ei~~Lks~~~~~~e~~~~ 213 (227)
+.-.|.+-|.+..-.-.+|+.++-.-+++ -++.|++||++.+.+-+.|.-
T Consensus 442 ei~~L~eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eq 494 (542)
T KOG0993|consen 442 EIQSLQEQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLHQQCEQ 494 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33333333333222223333333332332 399999999999999777655
No 324
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=31.67 E-value=2.9e+02 Score=22.77 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHhHHhHHHHHHHHHHH
Q 037795 128 KTVHSCLSEMQSIKEKHEQLQEQLLEY 154 (227)
Q Consensus 128 ~~l~sRL~kLL~lK~~~~~~~~~~k~l 154 (227)
..+..+|.++..++.++......++..
T Consensus 55 e~a~~~L~~~~~~~~~i~e~~~kl~~~ 81 (126)
T PF09403_consen 55 EAAEAELAELKELYAEIEEKIEKLKQD 81 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 355666666666666666655555444
No 325
>PLN02678 seryl-tRNA synthetase
Probab=31.63 E-value=1.6e+02 Score=29.06 Aligned_cols=10 Identities=20% Similarity=0.262 Sum_probs=3.5
Q ss_pred hhhHHHHHHH
Q 037795 170 VELDHVVKEI 179 (227)
Q Consensus 170 ~~l~e~er~I 179 (227)
+++..++..+
T Consensus 85 ~ei~~le~~~ 94 (448)
T PLN02678 85 KEITEKEAEV 94 (448)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 326
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=31.59 E-value=1.6e+02 Score=28.41 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=5.1
Q ss_pred hhhhHHHHHHHHHH
Q 037795 169 TVELDHVVKEIKML 182 (227)
Q Consensus 169 e~~l~e~er~I~eL 182 (227)
++++.+++..+.++
T Consensus 82 ~~~~~~~~~~~~~~ 95 (418)
T TIGR00414 82 KEELTELSAALKAL 95 (418)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 327
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=31.55 E-value=55 Score=23.66 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=17.3
Q ss_pred HHHHHHhCCCch--hhhHHHHHHH
Q 037795 116 ALLNLESHGFDV--KTVHSCLSEM 137 (227)
Q Consensus 116 tl~~LE~~GFdV--~~l~sRL~kL 137 (227)
....|+..||++ .+++.||..|
T Consensus 19 l~~~L~~~g~~~se~avRrrLr~m 42 (66)
T PF08461_consen 19 LAEELKLRGEELSEEAVRRRLRAM 42 (66)
T ss_pred HHHHHHhcChhhhHHHHHHHHHHH
Confidence 445677889998 8899888875
No 328
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=31.34 E-value=3.9e+02 Score=27.86 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=38.3
Q ss_pred HhcccCCCchhh-HHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHH
Q 037795 98 TSKLQVSDPTSI-FNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVV 176 (227)
Q Consensus 98 v~~l~idD~~s~-fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~e 176 (227)
+.+++..++... +.++.+.-..|+. +|+....-+++.+.+=-.+.++ -...+--|..+|++.-
T Consensus 80 ie~~q~r~di~~~~~dl~e~vsqm~~---~vK~~L~~vK~qveiAmE~~EL-------------~~~vlg~l~~EIe~~~ 143 (683)
T PF08580_consen 80 IEDLQLREDIANSLFDLIEEVSQMEL---DVKKTLISVKKQVEIAMEWEEL-------------WNDVLGDLDNEIEECI 143 (683)
T ss_pred cccccccccccccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHH-------------HHHHHHHHHHHHHHHH
Confidence 344444334333 5555555555555 4443333333333333333322 2334556777777787
Q ss_pred HHHHHHHHHHHH
Q 037795 177 KEIKMLEESKAK 188 (227)
Q Consensus 177 r~I~eLe~~~~~ 188 (227)
+.+.|+|+..-.
T Consensus 144 ~~vfemeE~R~~ 155 (683)
T PF08580_consen 144 RLVFEMEEKRHS 155 (683)
T ss_pred HHHHHHHHHHcc
Confidence 888888775443
No 329
>PRK11546 zraP zinc resistance protein; Provisional
Probab=31.31 E-value=3.3e+02 Score=23.10 Aligned_cols=24 Identities=8% Similarity=0.162 Sum_probs=11.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 197 IAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 197 i~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
|.+|.+++..+...+.+-+..|+.
T Consensus 91 I~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 91 INAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444444443
No 330
>PRK00295 hypothetical protein; Provisional
Probab=31.16 E-value=2.1e+02 Score=20.95 Aligned_cols=37 Identities=19% Similarity=0.053 Sum_probs=14.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 152 LEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 152 k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
..|+.++.-.+.-...|-..+-.-.+.|..|++++..
T Consensus 8 ~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~ 44 (68)
T PRK00295 8 TELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAA 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333333333333333333444444444333
No 331
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=31.08 E-value=1.9e+02 Score=24.43 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=15.0
Q ss_pred HHHHHHHhCCCchhhhHHHHH
Q 037795 115 EALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 115 ~tl~~LE~~GFdV~~l~sRL~ 135 (227)
..+..|...||.+..++.-|+
T Consensus 49 ~~I~~lr~~G~sL~eI~~ll~ 69 (172)
T cd04790 49 EQICAYRSAGVSLEDIRSLLQ 69 (172)
T ss_pred HHHHHHHHcCCCHHHHHHHHh
Confidence 556667888998887666544
No 332
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.06 E-value=3.1e+02 Score=29.81 Aligned_cols=31 Identities=16% Similarity=0.068 Sum_probs=18.1
Q ss_pred HhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 158 ILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 158 i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
.+++..-..+++..+.++|-.|..++|....
T Consensus 652 ~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~ 682 (970)
T KOG0946|consen 652 HEELDDIQQKYKGLIRELDYQIENLKQMEKE 682 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444456677777777777777664333
No 333
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=31.03 E-value=2.8e+02 Score=22.19 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=15.3
Q ss_pred HHHHHHHhCCCchhhhHHHHH
Q 037795 115 EALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 115 ~tl~~LE~~GFdV~~l~sRL~ 135 (227)
..+..|...||..+.++.-|.
T Consensus 48 ~~I~~lr~~G~sL~eI~~~l~ 68 (133)
T cd04787 48 RFILSARQLGFSLKDIKEILS 68 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHh
Confidence 566778889999888765443
No 334
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=30.90 E-value=2.1e+02 Score=30.01 Aligned_cols=19 Identities=16% Similarity=0.400 Sum_probs=7.7
Q ss_pred HHHhHHhHHHHHHHHHHHH
Q 037795 137 MQSIKEKHEQLQEQLLEYE 155 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le 155 (227)
|+.+..+|.++..+..++.
T Consensus 95 L~ele~krqel~seI~~~n 113 (907)
T KOG2264|consen 95 LTELEVKRQELNSEIEEIN 113 (907)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 4444444444433333333
No 335
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=30.81 E-value=3.9e+02 Score=23.81 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=24.2
Q ss_pred HHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 037795 156 CHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS 191 (227)
Q Consensus 156 ~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~ 191 (227)
..+.....++..+-+.+..+++....|-+...+++.
T Consensus 69 ~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~ 104 (207)
T PF05010_consen 69 AEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKE 104 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 335555666667777777777777777777666544
No 336
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=30.75 E-value=2.6e+02 Score=22.79 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCchhhhHHHHH
Q 037795 113 MFEALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 113 ~~~tl~~LE~~GFdV~~l~sRL~ 135 (227)
.+..+..|...||.+..++.-|.
T Consensus 46 ~l~~I~~lr~~G~sl~eI~~~l~ 68 (139)
T cd01110 46 RIAFIKVAQRLGLSLAEIAEALA 68 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Confidence 34556677888998888776554
No 337
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=30.59 E-value=4.5e+02 Score=24.52 Aligned_cols=45 Identities=9% Similarity=0.009 Sum_probs=18.8
Q ss_pred CCchhhhHHHHHHHHH----hHHhHHHHHHHHHHHHHHHhhhhhhhhhh
Q 037795 124 GFDVKTVHSCLSEMQS----IKEKHEQLQEQLLEYECHILEQTSEQSKI 168 (227)
Q Consensus 124 GFdV~~l~sRL~kLL~----lK~~~~~~~~~~k~le~~i~e~~~e~skl 168 (227)
|=||..+-.||--|+. +.+.++...+..-.-=|.|.+.+..+...
T Consensus 95 dddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~ 143 (271)
T PF13805_consen 95 DDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPS 143 (271)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3345555555555443 34444443333333333344444444333
No 338
>PHA02557 22 prohead core protein; Provisional
Probab=30.37 E-value=4.6e+02 Score=24.58 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHH-HHhCCCchhh
Q 037795 108 SIFNGMFEALLN-LESHGFDVKT 129 (227)
Q Consensus 108 s~fe~~~~tl~~-LE~~GFdV~~ 129 (227)
..|++++..|.. +.+|||.|-.
T Consensus 115 em~Es~l~GLK~lF~Ehnv~vpe 137 (271)
T PHA02557 115 ELFESFLGGLKELFVEHNVVVPE 137 (271)
T ss_pred HHHHHHHHHHHHHHHHhCcCCcH
Confidence 346666665554 5778877643
No 339
>PRK09343 prefoldin subunit beta; Provisional
Probab=30.35 E-value=2.9e+02 Score=22.16 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHH---------HH-------------Hhhh---hhhHHHhhhhhH
Q 037795 150 QLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESK---------AK-------------LTSK---NESEIAASKSKV 204 (227)
Q Consensus 150 ~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~---------~~-------------~~~~---~d~ei~~Lks~~ 204 (227)
+...+..++......+..++..+.+++..+.||+.=- |. ++.. -+.+|.+|+...
T Consensus 15 ~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~ 94 (121)
T PRK09343 15 QLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQE 94 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555566666666666666555410 00 0001 178899999999
Q ss_pred HHHHHHHHHHHHhHHHhHhhhC
Q 037795 205 DVGNENIQNAQLDFESVAVCLG 226 (227)
Q Consensus 205 ~~~~e~~~~ae~eF~svaaa~~ 226 (227)
+.+.+.+.+.+..++..+...+
T Consensus 95 ~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 95 KKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998877653
No 340
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.31 E-value=3.8e+02 Score=23.53 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=20.8
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHHHhHhh
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFESVAVC 224 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa 224 (227)
.+++-+++..+....+....++.++...+..
T Consensus 152 ~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~ 182 (239)
T cd07647 152 PKEAEKLKKKAAQCKTSAEEADSAYKSSIGC 182 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777766665443
No 341
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=30.18 E-value=20 Score=26.63 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=16.2
Q ss_pred cccc--hhhhhhhhhhcccCCCCCC
Q 037795 46 KHSS--ILRAIEPMGVFQKMPQKPH 68 (227)
Q Consensus 46 K~s~--~W~~~EsmeVFk~vPQ~PH 68 (227)
-+|| +.++.|+|+-||.+|+.|-
T Consensus 30 A~sP~giLRt~~Ti~rFk~~p~~pG 54 (66)
T PF13838_consen 30 ANSPRGILRTPETINRFKQVPAQPG 54 (66)
T ss_dssp HHSGGGTT-SHHHHHHHHTS---TT
T ss_pred HhCccchhcCHHHHHHHHcCCCCCC
Confidence 3566 8899999999999999885
No 342
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=30.10 E-value=2.2e+02 Score=22.16 Aligned_cols=21 Identities=5% Similarity=-0.010 Sum_probs=13.5
Q ss_pred HHHHHHHhCCCchhhhHHHHH
Q 037795 115 EALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 115 ~tl~~LE~~GFdV~~l~sRL~ 135 (227)
..+..|...||.+..++.-|+
T Consensus 48 ~~I~~lr~~G~~l~~I~~~l~ 68 (107)
T cd01111 48 RFVRAAFEAGIGLDELARLCR 68 (107)
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 344567778888776655443
No 343
>PRK04325 hypothetical protein; Provisional
Probab=29.94 E-value=2.3e+02 Score=21.05 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 151 LLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 151 ~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
+..|+.++.-.+.-...|-..+-+-.+.|..|++++..+
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333333344444444444444444444443
No 344
>PHA02114 hypothetical protein
Probab=29.78 E-value=33 Score=28.11 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCchhhhHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCL 134 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL 134 (227)
++..+.||+.||||..-|.-+
T Consensus 99 i~v~s~le~~g~~vvatqelv 119 (127)
T PHA02114 99 IKVISRLEEAGFNVVATQELV 119 (127)
T ss_pred HHHHHHHHhcCceeeehhhhh
Confidence 567899999999998876533
No 345
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=29.70 E-value=1.3e+02 Score=28.51 Aligned_cols=37 Identities=8% Similarity=0.105 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 037795 149 EQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEES 185 (227)
Q Consensus 149 ~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~ 185 (227)
.++..+.-++..++..+.+|+....+++|.|..|++-
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666677777888888888888877774
No 346
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.60 E-value=5.3e+02 Score=24.98 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=11.1
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHH
Q 037795 134 LSEMQSIKEKHEQLQEQLLEYECH 157 (227)
Q Consensus 134 L~kLL~lK~~~~~~~~~~k~le~~ 157 (227)
+++++.+-..+.+++.+...+..+
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~ 50 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAE 50 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555544444444444444333
No 347
>PRK00846 hypothetical protein; Provisional
Probab=29.48 E-value=2.3e+02 Score=21.61 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=27.3
Q ss_pred HHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 037795 138 QSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS 191 (227)
Q Consensus 138 L~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~ 191 (227)
|++++.. +.+.+..|+.++.-.+.-...+-..+-.-.+.|..|++++..++.
T Consensus 4 ~~~~~~~--le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 4 LSLRDQA--LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred hhHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433 334556666665555555555555555555555555555554443
No 348
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=29.44 E-value=4.5e+02 Score=27.27 Aligned_cols=32 Identities=13% Similarity=0.086 Sum_probs=22.1
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHHHhHhhh
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFESVAVCL 225 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa~ 225 (227)
-.....++.++..++++.++++++-..+..|+
T Consensus 462 ~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al 493 (607)
T KOG0240|consen 462 RRLYEDIQQELSEIQEENEAAKDEVKEVLTAL 493 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777888888888888866665554
No 349
>PRK02119 hypothetical protein; Provisional
Probab=29.28 E-value=2.4e+02 Score=20.93 Aligned_cols=40 Identities=15% Similarity=0.065 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 150 QLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 150 ~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
.+..|+.++.-.+.-...|-..+-.-.+.|..|++++..+
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443
No 350
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=29.27 E-value=2.7e+02 Score=21.91 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=14.3
Q ss_pred HHHHHHHhCCCchhhhHHHHH
Q 037795 115 EALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 115 ~tl~~LE~~GFdV~~l~sRL~ 135 (227)
..+..|...||.+..++.-|.
T Consensus 48 ~~I~~lr~~G~sL~eI~~~l~ 68 (126)
T cd04783 48 RFIKRAQELGFTLDEIAELLE 68 (126)
T ss_pred HHHHHHHHcCCCHHHHHHHHh
Confidence 356667888888877665443
No 351
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=29.09 E-value=4.5e+02 Score=23.98 Aligned_cols=12 Identities=0% Similarity=0.011 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHh
Q 037795 206 VGNENIQNAQLD 217 (227)
Q Consensus 206 ~~~e~~~~ae~e 217 (227)
.+...+..++.+
T Consensus 250 ~~~~~l~~~~~~ 261 (423)
T TIGR01843 250 EAQARLAELRER 261 (423)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 352
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=28.94 E-value=1.9e+02 Score=24.41 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=38.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhH
Q 037795 76 KDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIK 141 (227)
Q Consensus 76 ~e~~REg~A~Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK 141 (227)
.+++|+.+..=-.-.|..+...+..+ -+...-+.+|+.+|.||.....+++.++.+.
T Consensus 31 D~efq~~~~yl~s~~f~~l~~~l~~~---------pE~~~l~~yL~~~gldv~~~i~~i~~~l~~~ 87 (179)
T PF06757_consen 31 DAEFQAAVRYLNSSEFKQLWQQLEAL---------PEVKALLDYLESAGLDVYYYINQINDLLGLP 87 (179)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHHcC---------HHHHHHHHHHHHCCCCHHHHHHHHHHHHcCC
Confidence 44455444433333455555544432 3556678899999999999999999998654
No 353
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=28.93 E-value=2.3e+02 Score=22.41 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=14.8
Q ss_pred HHHHHHHhCCCchhhhHHHH
Q 037795 115 EALLNLESHGFDVKTVHSCL 134 (227)
Q Consensus 115 ~tl~~LE~~GFdV~~l~sRL 134 (227)
..+..|...||....++.-|
T Consensus 47 ~~I~~l~~~G~sl~eI~~~l 66 (124)
T TIGR02051 47 RFIKRAQELGFSLEEIGGLL 66 (124)
T ss_pred HHHHHHHHCCCCHHHHHHHH
Confidence 55667788899988877544
No 354
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=28.78 E-value=3.5e+02 Score=28.58 Aligned_cols=65 Identities=20% Similarity=0.150 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh---hhhHHHhhhhhHHHHHH
Q 037795 145 EQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK---NESEIAASKSKVDVGNE 209 (227)
Q Consensus 145 ~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~---~d~ei~~Lks~~~~~~e 209 (227)
++...+...+.....+...+...++.....+...|.|++....++-.- -..|...||+.|..+.+
T Consensus 51 ~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 51 SNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333334444444333333333344444333433344443333332111 15566667766665543
No 355
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.73 E-value=6.4e+02 Score=25.66 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHhCCCchhhhHHH----------HHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHH
Q 037795 109 IFNGMFEALLNLESHGFDVKTVHSC----------LSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKE 178 (227)
Q Consensus 109 ~fe~~~~tl~~LE~~GFdV~~l~sR----------L~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~ 178 (227)
.|+..-+..++-+.||-..+.+.++ |.+|+.+|.+-... +..-++-+.++...+......
T Consensus 239 q~eeneel~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~----------l~dgeayLaKL~~~l~~~~~~ 308 (521)
T KOG1937|consen 239 QNEENEELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEA----------LDDGEAYLAKLMGKLAELNKQ 308 (521)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHh----------cCChHhHHHHHHHHHHHHHHH
Confidence 4444455666666666666555543 44444444333322 223333344444444444444
Q ss_pred HHHHHHHHHH-----------Hhhh------hhh---HHHhhhhhHHHHHHHHHHHHHhHHHhHhh
Q 037795 179 IKMLEESKAK-----------LTSK------NES---EIAASKSKVDVGNENIQNAQLDFESVAVC 224 (227)
Q Consensus 179 I~eLe~~~~~-----------~~~~------~d~---ei~~Lks~~~~~~e~~~~ae~eF~svaaa 224 (227)
|.+|.++-.. ++.. .++ +|-+|+.++.+..++++.-+..-...-++
T Consensus 309 ~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrse 374 (521)
T KOG1937|consen 309 MEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSE 374 (521)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444443322 1111 144 46667778888888887555544444443
No 356
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=28.68 E-value=2.9e+02 Score=21.72 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=13.1
Q ss_pred HHHHHHHhCCCchhhhHHHH
Q 037795 115 EALLNLESHGFDVKTVHSCL 134 (227)
Q Consensus 115 ~tl~~LE~~GFdV~~l~sRL 134 (227)
..+..|...||.+..++.-|
T Consensus 48 ~~I~~lr~~G~sL~eI~~~l 67 (127)
T cd04784 48 LFIRRCRSLDMSLDEIRTLL 67 (127)
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 44566677788887766533
No 357
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=28.54 E-value=2.8e+02 Score=21.89 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=13.4
Q ss_pred HHHHHHHHhCCCchhhhHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCL 134 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL 134 (227)
+..+..|...||....++.-|
T Consensus 47 l~~I~~lr~~G~sL~eI~~~l 67 (127)
T TIGR02044 47 LRLISRARQVGFSLEECKELL 67 (127)
T ss_pred HHHHHHHHHCCCCHHHHHHHH
Confidence 345556777888777766543
No 358
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=28.48 E-value=2.1e+02 Score=21.61 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=15.4
Q ss_pred HHHHHHHHhCCCchhhhHHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL~ 135 (227)
+..+..|...||.+..++.-++
T Consensus 47 l~~I~~lr~~G~~l~eI~~~l~ 68 (97)
T cd04782 47 LDIILLLKELGISLKEIKDYLD 68 (97)
T ss_pred HHHHHHHHHcCCCHHHHHHHHh
Confidence 4456677888998877776543
No 359
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=28.36 E-value=5.3e+02 Score=24.60 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=14.5
Q ss_pred CCchhhhHHHHHHHHHhHHhHHHHH
Q 037795 124 GFDVKTVHSCLSEMQSIKEKHEQLQ 148 (227)
Q Consensus 124 GFdV~~l~sRL~kLL~lK~~~~~~~ 148 (227)
.|=+..|..+|++|..=|....+.+
T Consensus 105 E~ltn~L~rkl~qLr~EK~~lE~~L 129 (310)
T PF09755_consen 105 EFLTNDLSRKLNQLRQEKVELENQL 129 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666665555444433
No 360
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.17 E-value=5.6e+02 Score=25.06 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=19.3
Q ss_pred HHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 155 ECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 155 e~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
..++.+.......++..+.+++++|.+|++++..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 137 GSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444445555566666666666666665554
No 361
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=28.04 E-value=5.2e+02 Score=25.02 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=14.1
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQNAQL 216 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~ 216 (227)
++-+.+.+..+..+.++.+.|-.
T Consensus 334 GaplvkIkqavsKLk~et~~mnv 356 (384)
T KOG0972|consen 334 GAPLVKIKQAVSKLKEETQTMNV 356 (384)
T ss_pred CchHHHHHHHHHHHHHHHHhhhh
Confidence 66666666666666666655443
No 362
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=27.92 E-value=4e+02 Score=23.11 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=15.7
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHH
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHV 175 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~ 175 (227)
+...+.+...+......+.+.|.........+.+.+...
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~ 103 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQR 103 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444333333333333
No 363
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=27.88 E-value=1.3e+02 Score=25.48 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=29.6
Q ss_pred HHHhHHhHHHHHHHHH--HHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 137 MQSIKEKHEQLQEQLL--EYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k--~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
+..++.++..++.... .++..+..+..+...++.+++++++.+..++..+..
T Consensus 25 l~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (151)
T PF14584_consen 25 LRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRN 78 (151)
T ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555554433322 255556666666666666666666666666665544
No 364
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=27.77 E-value=4.9e+02 Score=24.07 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=22.9
Q ss_pred HhhhhhhHHHhhhhhHHHHHHHHHHHHHhHH
Q 037795 189 LTSKNESEIAASKSKVDVGNENIQNAQLDFE 219 (227)
Q Consensus 189 ~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~ 219 (227)
.++++.+.++.|+..++.++..+.++..+-.
T Consensus 75 ~eek~e~~l~~Lq~ql~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 75 WEEKEESKLSKLQQQLEQLDAKIQKTQEELN 105 (258)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666688888888888888888886655543
No 365
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=27.70 E-value=3.2e+02 Score=21.88 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=11.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhHHHhHh
Q 037795 196 EIAASKSKVDVGNENIQNAQLDFESVAV 223 (227)
Q Consensus 196 ei~~Lks~~~~~~e~~~~ae~eF~svaa 223 (227)
+|..||.+...+....++.+ +|..+|.
T Consensus 96 ~ie~lk~~L~~ak~~r~~k~-eyd~La~ 122 (139)
T PF05615_consen 96 EIEELKEELEEAKRVRQNKE-EYDALAK 122 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34444444444444433333 4444443
No 366
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.65 E-value=3.7e+02 Score=22.62 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=11.3
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHh
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLD 217 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~e 217 (227)
..||..++.+.+..+.+...++.+
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544444444444433
No 367
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.61 E-value=2.3e+02 Score=29.04 Aligned_cols=58 Identities=28% Similarity=0.327 Sum_probs=30.9
Q ss_pred hhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 127 VKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 127 V~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
+..+-.||..|..|+..|..-.++...+..++.+.=..+...+..+..++..+..+++
T Consensus 299 L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~ 356 (557)
T COG0497 299 LEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKA 356 (557)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 6677788888888888877644444444444333333333333333333333333333
No 368
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.51 E-value=8.2e+02 Score=27.27 Aligned_cols=11 Identities=27% Similarity=0.292 Sum_probs=6.9
Q ss_pred HHHHHHhCCCc
Q 037795 116 ALLNLESHGFD 126 (227)
Q Consensus 116 tl~~LE~~GFd 126 (227)
.+.+|+++-|.
T Consensus 253 Kl~Elekmkiq 263 (1243)
T KOG0971|consen 253 KLKELEKMKIQ 263 (1243)
T ss_pred HHHHHHHHHHH
Confidence 45667776664
No 369
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.37 E-value=1.8e+02 Score=23.93 Aligned_cols=29 Identities=14% Similarity=0.325 Sum_probs=16.1
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 160 EQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 160 e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
.+++..+.++++++.-+-+|..||.+...
T Consensus 64 dk~a~~s~leak~k~see~IeaLqkkK~Y 92 (114)
T KOG3501|consen 64 DKAAVRSHLEAKMKSSEEKIEALQKKKTY 92 (114)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44555556666666666666666554433
No 370
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=27.27 E-value=3.3e+02 Score=21.92 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 037795 147 LQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKA 187 (227)
Q Consensus 147 ~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~ 187 (227)
+.+.++.-+..+.-...|+..+...-+-+.+.|..||.++.
T Consensus 31 L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 31 LKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444
No 371
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=27.21 E-value=2.5e+02 Score=20.38 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=13.0
Q ss_pred hHHHhhhhhHHHHHHHHHHH
Q 037795 195 SEIAASKSKVDVGNENIQNA 214 (227)
Q Consensus 195 ~ei~~Lks~~~~~~e~~~~a 214 (227)
.++..-|.++..+++.|++.
T Consensus 31 ~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 31 ADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34555666777777777664
No 372
>PRK13824 replication initiation protein RepC; Provisional
Probab=27.16 E-value=5.9e+02 Score=24.75 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=30.7
Q ss_pred HhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhh
Q 037795 121 ESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTS 163 (227)
Q Consensus 121 E~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~ 163 (227)
+..|||-.+|..|..+|..+=.....-..+.+.+...+.-..-
T Consensus 135 ~AfGfDLsPL~~R~~El~~~A~~~~ae~~~~r~lr~~it~~rR 177 (404)
T PRK13824 135 EAFGFDLAPLLARAEEFEALAEQVAAERKALRRLRERLTLCRR 177 (404)
T ss_pred eeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999988776666555556666555433333
No 373
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=27.10 E-value=2.1e+02 Score=22.31 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 147 LQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 147 ~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
..+....+++++...+....+++..++.++..+.+++.++-.+
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 374
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.95 E-value=4.2e+02 Score=26.29 Aligned_cols=28 Identities=7% Similarity=0.219 Sum_probs=14.3
Q ss_pred HhhhhhHHHHHHHHHHHHHhHHHhHhhh
Q 037795 198 AASKSKVDVGNENIQNAQLDFESVAVCL 225 (227)
Q Consensus 198 ~~Lks~~~~~~e~~~~ae~eF~svaaa~ 225 (227)
..++...+.++.....++.+.+.++.++
T Consensus 78 ~~l~~~l~~~e~~~~~~~~~l~~~ll~i 105 (429)
T COG0172 78 KELKEKLKELEAALDELEAELDTLLLTI 105 (429)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhC
Confidence 3444445555555555555555555443
No 375
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=26.82 E-value=49 Score=25.29 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=53.0
Q ss_pred CCCCCCCccccCCchhhhhHHHHHHHHHHHH--HHHHHhcccCCCchhhHHHHHHHH--HHH-Hh-CCCchhhhHHHHHH
Q 037795 63 MPQKPHFNLLDGSKDMYLEGLVTGYMLTFAN--VVEQTSKLQVSDPTSIFNGMFEAL--LNL-ES-HGFDVKTVHSCLSE 136 (227)
Q Consensus 63 vPQ~PHF~pL~~~~e~~REg~A~Glm~tF~~--l~e~v~~l~idD~~s~fe~~~~tl--~~L-E~-~GFdV~~l~sRL~k 136 (227)
.-+.|++.+..++..++++|.|+...+.|+. ++ ..++.+..+.++.+.++-+.- ... ++ .||++-++ -++.
T Consensus 4 ~~~~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l-~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l--~~ed 80 (85)
T PF11971_consen 4 ARCAPYFPPVEDLTQDLSDGRALCALIHFYCPQLL-PLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFSCCHL--EPED 80 (85)
T ss_pred cccCCCCcchhhhhhhhccHHHHHHHHHHhCccee-cHhHcccccchHHHHhhhhHHHHHHHHHHHcCCCcCcC--CHHH
Confidence 3467999999999999999999999988864 33 247778889999988876633 332 33 47877766 4444
Q ss_pred HH
Q 037795 137 MQ 138 (227)
Q Consensus 137 LL 138 (227)
|+
T Consensus 81 l~ 82 (85)
T PF11971_consen 81 LL 82 (85)
T ss_pred Hh
Confidence 43
No 376
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=26.59 E-value=3.3e+02 Score=25.44 Aligned_cols=27 Identities=7% Similarity=0.147 Sum_probs=21.4
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
++|.++|+....++++++.....+|+.
T Consensus 220 ~ae~seLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 220 VAEKSELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 677788888888888888887777764
No 377
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=26.38 E-value=2.2e+02 Score=24.71 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=20.2
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 037795 159 LEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK 192 (227)
Q Consensus 159 ~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~ 192 (227)
++...|+.+++++|..+..-+.-.++..+.++.+
T Consensus 32 eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4556666666666666655555555555555554
No 378
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=26.27 E-value=2.6e+02 Score=20.37 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=11.6
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhh
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKI 168 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skl 168 (227)
+|...-.....++..+++..+.+.++.++
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433333333333
No 379
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=26.15 E-value=3.4e+02 Score=21.69 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=14.8
Q ss_pred HHHHHHHHhCCCchhhhHHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL~ 135 (227)
+..+..|...||.+..++.-+.
T Consensus 48 l~~I~~lr~~G~sl~eI~~~l~ 69 (131)
T TIGR02043 48 LRFILKAKELGFTLDEIKELLS 69 (131)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4455667788998887765443
No 380
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=26.09 E-value=7.8e+02 Score=28.00 Aligned_cols=105 Identities=19% Similarity=0.258 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHhC-CCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 106 PTSIFNGMFEALLNLESH-GFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 106 ~~s~fe~~~~tl~~LE~~-GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
....|..-..++..+.+. +|+|+..+.-|.-|-.+|.+...+..-.-..+.++..-..+.+.++.++.+.++.|.++.-
T Consensus 179 ~~tky~KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~ 258 (1294)
T KOG0962|consen 179 SATKYTKALDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEK 258 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHhhhh--hhHHHhhhhhHHHHHHHHHH
Q 037795 185 SKAKLTSKN--ESEIAASKSKVDVGNENIQN 213 (227)
Q Consensus 185 ~~~~~~~~~--d~ei~~Lks~~~~~~e~~~~ 213 (227)
.+.+-. ..++..|+++-..+.+.+..
T Consensus 259 ---~~~el~k~~~~~~~l~~e~~~l~~~~~~ 286 (1294)
T KOG0962|consen 259 ---SLKELEKLLKQVKLLDSEHKNLKKQISR 286 (1294)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 381
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=25.84 E-value=4.4e+02 Score=22.80 Aligned_cols=113 Identities=11% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHH----hHHhHHHHHHHHHHHHHHHhhhhhhhh
Q 037795 91 FANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQS----IKEKHEQLQEQLLEYECHILEQTSEQS 166 (227)
Q Consensus 91 F~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~----lK~~~~~~~~~~k~le~~i~e~~~e~s 166 (227)
|+++.+++..+.-......+-.+..+|.+.-..==.|+.+-.+=.+++. +.....++...+.++.-.-........
T Consensus 67 ~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~ 146 (216)
T cd07627 67 LAEVQKRIKESLERQALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLN 146 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHH
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhh
Q 037795 167 KITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSK 203 (227)
Q Consensus 167 kle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~ 203 (227)
.++.++.+.+++....++......+..-.|+.+.+..
T Consensus 147 ~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~ 183 (216)
T cd07627 147 SLLSELEEAERRASELKKEFEEVSELIKSELERFERE 183 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 382
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=25.49 E-value=7e+02 Score=25.04 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhCCCc
Q 037795 111 NGMFEALLNLESHGFD 126 (227)
Q Consensus 111 e~~~~tl~~LE~~GFd 126 (227)
+-|-.++..||++-=+
T Consensus 160 ~~Y~~~l~~Le~~~~~ 175 (447)
T KOG2751|consen 160 DTYKACLQRLEQQNQD 175 (447)
T ss_pred HHHHHHHHHHhhcCcc
Confidence 3344444555554433
No 383
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=25.42 E-value=4.7e+02 Score=23.02 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh-hhh--hh----HHHhhhhhHHHHHHHHHHHHHhHH
Q 037795 148 QEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLT-SKN--ES----EIAASKSKVDVGNENIQNAQLDFE 219 (227)
Q Consensus 148 ~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~-~~~--d~----ei~~Lks~~~~~~e~~~~ae~eF~ 219 (227)
..++|.|+.+|..++-|++..+.++..+-+.....+.-+..-. +.. .. .--.+.+...+++..|.-.+.++.
T Consensus 3 isALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLe 81 (178)
T PF14073_consen 3 ISALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLE 81 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888887777666655444222110 000 11 122455566666666666665554
No 384
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=25.23 E-value=4.8e+02 Score=23.08 Aligned_cols=14 Identities=29% Similarity=0.252 Sum_probs=5.6
Q ss_pred hhhHHHHHHHHHHH
Q 037795 107 TSIFNGMFEALLNL 120 (227)
Q Consensus 107 ~s~fe~~~~tl~~L 120 (227)
.+.++..-....+|
T Consensus 71 ~~v~e~~d~~~~~l 84 (211)
T cd07588 71 ASIFEQLDLLWNDL 84 (211)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444333333443
No 385
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.12 E-value=2.3e+02 Score=21.74 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=13.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 152 LEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 152 k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
+-+++++...+....+++..++.+...|.+++.
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444443
No 386
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=25.11 E-value=5e+02 Score=23.26 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=34.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhh-hhhhHHHhhhhhHHHHHHHHHHHHHhHHHhH
Q 037795 167 KITVELDHVVKEIKMLEESKAKLTS-KNESEIAASKSKVDVGNENIQNAQLDFESVA 222 (227)
Q Consensus 167 kle~~l~e~er~I~eLe~~~~~~~~-~~d~ei~~Lks~~~~~~e~~~~ae~eF~sva 222 (227)
++-+.....+..+...+.+++++.. .+.-.|.+++.++..++..+..++.+|+.|-
T Consensus 130 k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is 186 (234)
T cd07664 130 KCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQIS 186 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444422 2344677788888888888888888888763
No 387
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=25.05 E-value=2e+02 Score=27.30 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=20.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhh---hhHHHhhhhhHHHHHHHHH
Q 037795 167 KITVELDHVVKEIKMLEESKAKLTSKN---ESEIAASKSKVDVGNENIQ 212 (227)
Q Consensus 167 kle~~l~e~er~I~eLe~~~~~~~~~~---d~ei~~Lks~~~~~~e~~~ 212 (227)
++.+++..+|..+.=|+-++...+..- ..+|.++|++.+.......
T Consensus 85 Klshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 85 KLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333344444444444433333221 5555556655555555544
No 388
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=25.03 E-value=2.9e+02 Score=20.48 Aligned_cols=19 Identities=5% Similarity=0.149 Sum_probs=9.0
Q ss_pred hhHHHhhhhhHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQ 212 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~ 212 (227)
...+.++....+-+++.+.
T Consensus 85 ~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 85 TQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445444444444443
No 389
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=24.99 E-value=3.1e+02 Score=24.21 Aligned_cols=61 Identities=11% Similarity=0.193 Sum_probs=31.1
Q ss_pred HhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh-----hhhhHHHhhhhhHHHHHHHHHHHHHhH
Q 037795 158 ILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS-----KNESEIAASKSKVDVGNENIQNAQLDF 218 (227)
Q Consensus 158 i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~-----~~d~ei~~Lks~~~~~~e~~~~ae~eF 218 (227)
+......-.-+.....+.+..|.-++.+..++.+ +.=.++..++.+...++.+|+..+-+-
T Consensus 120 v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~ 185 (262)
T PF14257_consen 120 VTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQL 185 (262)
T ss_pred eeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555555555555322 224455566666666666665555443
No 390
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=24.90 E-value=3.1e+02 Score=20.79 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 037795 148 QEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKA 187 (227)
Q Consensus 148 ~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~ 187 (227)
...+..+...+..++.-...++..|+-+-++|.-|+.+++
T Consensus 42 ~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~ 81 (88)
T PF10241_consen 42 QQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLA 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666666666777777777666666544
No 391
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=24.88 E-value=1.6e+02 Score=32.58 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=56.2
Q ss_pred HHHHhCCCchhhhHHHHHH-------------HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 118 LNLESHGFDVKTVHSCLSE-------------MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 118 ~~LE~~GFdV~~l~sRL~k-------------LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
..||+-|-++....+|=++ =+.++-..+-+......|+.+++++..-+-+++.+||.++..|..|.|
T Consensus 140 ~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrq 219 (1195)
T KOG4643|consen 140 KLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQ 219 (1195)
T ss_pred HHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888877766443 445666777777788888888999998888999999999999999988
Q ss_pred HHHH
Q 037795 185 SKAK 188 (227)
Q Consensus 185 ~~~~ 188 (227)
+..-
T Consensus 220 e~~e 223 (1195)
T KOG4643|consen 220 EIEE 223 (1195)
T ss_pred HHHH
Confidence 7655
No 392
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.87 E-value=4.9e+02 Score=23.02 Aligned_cols=77 Identities=12% Similarity=0.134 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcccCCCch--hhHHHHHHHHHHHHhC-CC---chh-hhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhh
Q 037795 88 MLTFANVVEQTSKLQVSDPT--SIFNGMFEALLNLESH-GF---DVK-TVHSCLSEMQSIKEKHEQLQEQLLEYECHILE 160 (227)
Q Consensus 88 m~tF~~l~e~v~~l~idD~~--s~fe~~~~tl~~LE~~-GF---dV~-~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e 160 (227)
-..|++-+......+++||. ..|.....+|.+++.. -- ++. .+.-+|.++ +|++.....+.+|..++.-..
T Consensus 39 ~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F--~k~dl~~vKe~kK~FdK~s~~ 116 (200)
T cd07639 39 SRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLL--VKEDLRGFRDARKEFERGAES 116 (200)
T ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHhhhHhhcchh
Confidence 35688999999988999974 3344444455555322 11 121 222333333 344444555677777765444
Q ss_pred hhhhhh
Q 037795 161 QTSEQS 166 (227)
Q Consensus 161 ~~~e~s 166 (227)
....+.
T Consensus 117 ~d~al~ 122 (200)
T cd07639 117 LEAALQ 122 (200)
T ss_pred HHHHHH
Confidence 443333
No 393
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=24.86 E-value=3.8e+02 Score=21.81 Aligned_cols=18 Identities=11% Similarity=0.027 Sum_probs=6.6
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 037795 169 TVELDHVVKEIKMLEESK 186 (227)
Q Consensus 169 e~~l~e~er~I~eLe~~~ 186 (227)
.+..+.....|.+|+.++
T Consensus 50 ~~q~~s~~qr~~eLqaki 67 (107)
T PF09304_consen 50 QAQNASRNQRIAELQAKI 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 394
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=24.82 E-value=3.4e+02 Score=22.80 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=15.8
Q ss_pred HHHHHHHHHhCCCchhhhHHHHH
Q 037795 113 MFEALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 113 ~~~tl~~LE~~GFdV~~l~sRL~ 135 (227)
.+..+..|..-||....++.=|+
T Consensus 56 ~L~~I~~lr~lG~sL~eIk~ll~ 78 (154)
T PRK15002 56 YVAIIKIAQRIGIPLATIGEAFG 78 (154)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Confidence 34566778888998887665443
No 395
>PRK07857 hypothetical protein; Provisional
Probab=24.74 E-value=1.6e+02 Score=23.79 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=16.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 165 QSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 165 ~skle~~l~e~er~I~eLe~~~~~ 188 (227)
+..+-..||++|+.|.+|=.++..
T Consensus 30 L~~lR~eID~ID~eIl~LL~eR~~ 53 (106)
T PRK07857 30 IDELREEIDRLDAEILALVKRRTE 53 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888877665444
No 396
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=24.35 E-value=5.8e+02 Score=23.75 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=23.5
Q ss_pred hhhhHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 037795 127 VKTVHSCLSEMQSIKEKHEQLQEQLLEYEC 156 (227)
Q Consensus 127 V~~l~sRL~kLL~lK~~~~~~~~~~k~le~ 156 (227)
|..|+.-|++|-.||..|..+.+.++....
T Consensus 194 v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~ 223 (339)
T cd09238 194 VGTLRSNLEELEALGNERAGIEDMMKALKR 223 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466788888888899999888888866544
No 397
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=24.32 E-value=6.7e+02 Score=26.48 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhcccCCC
Q 037795 84 VTGYMLTFANVVEQTSKLQVSD 105 (227)
Q Consensus 84 A~Glm~tF~~l~e~v~~l~idD 105 (227)
--|++.+|.++=+-|.=.+-.|
T Consensus 372 l~Gl~ia~~~iDevI~iIR~s~ 393 (735)
T TIGR01062 372 LEGLRIAFLNIDEVIEIIREED 393 (735)
T ss_pred HHHHHHHHHhHHHHHHHHHcCh
Confidence 4477777777655554444333
No 398
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.30 E-value=4.1e+02 Score=21.92 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=12.5
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 160 EQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 160 e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
.....+.+++..+.++++++.||+.
T Consensus 24 ~~~~qk~~le~qL~E~~~al~Ele~ 48 (119)
T COG1382 24 KVILQKQQLEAQLKEIEKALEELEK 48 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444555555555555555543
No 399
>PRK10698 phage shock protein PspA; Provisional
Probab=24.23 E-value=3e+02 Score=24.31 Aligned_cols=30 Identities=3% Similarity=0.120 Sum_probs=13.3
Q ss_pred HhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 037795 158 ILEQTSEQSKITVELDHVVKEIKMLEESKA 187 (227)
Q Consensus 158 i~e~~~e~skle~~l~e~er~I~eLe~~~~ 187 (227)
+........+++..+..++.+|.+.+.+..
T Consensus 108 ~~~~~~~~~~L~~~l~~L~~ki~eak~k~~ 137 (222)
T PRK10698 108 VTLVDETLARMKKEIGELENKLSETRARQQ 137 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444544444433
No 400
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=24.17 E-value=4.6e+02 Score=23.69 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=21.8
Q ss_pred HHHHH----HHHhHHhHHHHHHHHHHHHHHHhh
Q 037795 132 SCLSE----MQSIKEKHEQLQEQLLEYECHILE 160 (227)
Q Consensus 132 sRL~k----LL~lK~~~~~~~~~~k~le~~i~e 160 (227)
+||++ .|++|.+|-++....+++++.++.
T Consensus 9 ~~Itd~DrAIL~lK~QRdkl~qyqkR~e~~le~ 41 (209)
T KOG2910|consen 9 SRITDQDRAILSLKTQRDKLKQYQKRLEKQLEA 41 (209)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 888999998888888888876543
No 401
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=24.13 E-value=5.2e+02 Score=23.11 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=24.4
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHHHhHhhh
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFESVAVCL 225 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa~ 225 (227)
.+++-+++..+....+.++.++.+++..+..+
T Consensus 152 ~keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l 183 (242)
T cd07671 152 PKQSEKSQNKAKQCRDAATEAERVYKQNIEQL 183 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888888888887766544
No 402
>smart00721 BAR BAR domain.
Probab=23.96 E-value=4.3e+02 Score=22.11 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=6.3
Q ss_pred HHHHHHHhHHHhH
Q 037795 210 NIQNAQLDFESVA 222 (227)
Q Consensus 210 ~~~~ae~eF~sva 222 (227)
.+-.+...|+.-+
T Consensus 214 ~~~~aq~~y~~~~ 226 (239)
T smart00721 214 ALIEAQLNFHRES 226 (239)
T ss_pred HHHHHHHHHHHHH
Confidence 3345555555543
No 403
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=23.90 E-value=2.4e+02 Score=28.65 Aligned_cols=47 Identities=17% Similarity=0.377 Sum_probs=26.9
Q ss_pred hHHHHHHHHH----hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHH
Q 037795 130 VHSCLSEMQS----IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEI 179 (227)
Q Consensus 130 l~sRL~kLL~----lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I 179 (227)
||..+-+||+ +|++|. .++++|.+.+.+....+++|+-++.++.+++
T Consensus 574 lr~qi~el~~ive~lk~~~~---kel~kl~~dleeek~mr~~lemei~~lkka~ 624 (627)
T KOG4348|consen 574 LRAQIIELLCIVEALKKDHG---KELEKLRKDLEEEKTMRSNLEMEIEKLKKAV 624 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHh
Confidence 4455555555 344444 3455555555566666777777766655443
No 404
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.86 E-value=7.8e+02 Score=25.05 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 146 QLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 146 ~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
+++.++|.....+...++..++++....++| ....+++.+.....--.+-+++|+..+...+..+-+...+.+.+
T Consensus 245 el~ae~kqh~v~~~ales~~sq~~e~~selE-~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~ 319 (521)
T KOG1937|consen 245 ELQAEYKQHLVEYKALESKRSQFEEQNSELE-KLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDT 319 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555666665555554 33333332222111125556666666655555555555555544
No 405
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=23.64 E-value=37 Score=27.90 Aligned_cols=27 Identities=22% Similarity=0.107 Sum_probs=18.6
Q ss_pred hhhhcccCCCCCCCccccCCchhhhhHH
Q 037795 56 PMGVFQKMPQKPHFNLLDGSKDMYLEGL 83 (227)
Q Consensus 56 smeVFk~vPQ~PHF~pL~~~~e~~REg~ 83 (227)
-+=.||.+ |+|||.|..=-...+|+.+
T Consensus 85 iL~YFkE~-qsiHFlPiiFd~~~L~~~l 111 (116)
T PF11317_consen 85 ILFYFKET-QSIHFLPIIFDPKQLREQL 111 (116)
T ss_pred EEEEEecC-CcceeeeeecCHHHHHHHH
Confidence 33344444 8899999776677777765
No 406
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=23.62 E-value=4.5e+02 Score=22.21 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=30.4
Q ss_pred hhhhhhcccCCCCCCCccccCCchhhhhHHHHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHH
Q 037795 54 IEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSC 133 (227)
Q Consensus 54 ~EsmeVFk~vPQ~PHF~pL~~~~e~~REg~A~Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sR 133 (227)
+|++.+=+..|+...=.+-...+.+++- +.-.+++.|..|++ ..+.+| +.++.+++-+..| +..++.-
T Consensus 52 L~~~gi~qLy~~~~~~~~~~d~~~eLkk-L~~sll~nfleLl~----~l~~~P-~~~~~ki~~i~~L------~~Nmhhl 119 (162)
T PF05983_consen 52 LESQGIRQLYPPDDDPSPSVDRKKELKK-LNKSLLLNFLELLD----ILSKNP-SQYERKIEDIRLL------FINMHHL 119 (162)
T ss_dssp ------------------HHHHHHHHHH-HHHHHHHHHHHHTT----SS---C-CCHHHHHHHHHHH------HHHHHHH
T ss_pred chhccccccCCCccccCCCchHHHHHHH-HHHHHHHHHHHHHH----HHHhCC-ccHHHHHHHHHHH------HHHHHHH
Confidence 4555544444444111111233334433 34467778888773 334444 4444455444444 3445666
Q ss_pred HHHHHHhHHhHH
Q 037795 134 LSEMQSIKEKHE 145 (227)
Q Consensus 134 L~kLL~lK~~~~ 145 (227)
||++.--+.+-+
T Consensus 120 lNeyRPhQARet 131 (162)
T PF05983_consen 120 LNEYRPHQARET 131 (162)
T ss_dssp HHHTHHHHHHHH
T ss_pred HHHhCHHHHHHH
Confidence 777655544443
No 407
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=23.54 E-value=4.8e+02 Score=22.48 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhCCCchhhhHHHH
Q 037795 112 GMFEALLNLESHGFDVKTVHSCL 134 (227)
Q Consensus 112 ~~~~tl~~LE~~GFdV~~l~sRL 134 (227)
..++-+..|-.-||.+..++.+.
T Consensus 44 ~~L~~I~~l~~~Gm~i~~i~~~~ 66 (175)
T PRK13182 44 QLLEYVKSQIEEGQNMQDTQKPS 66 (175)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHh
Confidence 35566677788899888887643
No 408
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=23.32 E-value=5.1e+02 Score=24.63 Aligned_cols=7 Identities=14% Similarity=0.619 Sum_probs=3.1
Q ss_pred CCchhhh
Q 037795 124 GFDVKTV 130 (227)
Q Consensus 124 GFdV~~l 130 (227)
|...++|
T Consensus 11 GL~~~aL 17 (307)
T PF10481_consen 11 GLPTRAL 17 (307)
T ss_pred cCCHHHH
Confidence 4444443
No 409
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.30 E-value=2.5e+02 Score=21.20 Aligned_cols=22 Identities=18% Similarity=0.528 Sum_probs=15.4
Q ss_pred HHHHHHHHhCCCchhhhHHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL~ 135 (227)
+..+..|-..||.++.++.-++
T Consensus 47 l~~I~~lr~~G~~l~eI~~~l~ 68 (96)
T cd04788 47 LHQIIALRRLGFSLREIGRALD 68 (96)
T ss_pred HHHHHHHHHcCCCHHHHHHHHh
Confidence 3456667778998888776554
No 410
>PF01481 Arteri_nucleo: Arterivirus nucleocapsid protein; InterPro: IPR002484 Arterivirus are ssRNA positive-strand viruses with no DNA stage in their replication cycle. This family contains the viral nucleocapsid protein, which encapsidates the viral ssRNA. Porcine reproductive and respiratory syndrome virus (PRRSV) is the causative agent of both severe and persistent respiratory disease and reproductive failure in pigs worldwide. The PRRSV virion contains a core made of the 123 amino acid nucleocapsid (N or VP1) protein, a product of the ORF7 gene. The crystal structure of the capsid-forming domain of the nucleocapsid protein has been determined to 2.6 A resolution. The protein exists as a tight dimer forming a four-stranded beta sheet floor superposed by two long alpha helices and flanked by two N- and two C-terminal alpha helices. The structure represents a new class of viral capsid-forming domains, distinctly different from those of other known enveloped viruses, but reminiscent of the coat protein of bacteriophage MS2 [].; GO: 0019013 viral nucleocapsid; PDB: 2I9F_C 1P65_A.
Probab=23.20 E-value=30 Score=28.50 Aligned_cols=16 Identities=44% Similarity=0.673 Sum_probs=3.2
Q ss_pred CCCCCCccccCCchhhhh
Q 037795 64 PQKPHFNLLDGSKDMYLE 81 (227)
Q Consensus 64 PQ~PHF~pL~~~~e~~RE 81 (227)
|++||| ||.+ ..|+|-
T Consensus 45 pekpHf-plA~-~dDiRh 60 (116)
T PF01481_consen 45 PEKPHF-PLAE-PDDIRH 60 (116)
T ss_dssp -------------SSGGG
T ss_pred CCCCCC-cccC-CCceee
Confidence 999998 5665 667774
No 411
>PF14182 YgaB: YgaB-like protein
Probab=23.15 E-value=3.6e+02 Score=20.89 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=28.3
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 037795 133 CLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKA 187 (227)
Q Consensus 133 RL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~ 187 (227)
-..+||.|+....+++.--+.+.+. +..+++..+..+|..+.+.+.+.++-+.
T Consensus 12 tMD~LL~LQsElERCqeIE~eL~~l--~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe 64 (79)
T PF14182_consen 12 TMDKLLFLQSELERCQEIEKELKEL--EREAELHSIQEEISQMKKELKEIQRVFE 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666555543332222221 3345566666666666666666665433
No 412
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.96 E-value=5.5e+02 Score=22.91 Aligned_cols=50 Identities=22% Similarity=0.257 Sum_probs=29.2
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHhhh-hhh-------hhhhhhhhHHHHHHHHHHHH
Q 037795 135 SEMQSIKEKHEQLQEQLLEYECHILEQ-TSE-------QSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 135 ~kLL~lK~~~~~~~~~~k~le~~i~e~-~~e-------~skle~~l~e~er~I~eLe~ 184 (227)
-+...||...+.|...+.+.+...... ... +..+++.|+=+++.+.++++
T Consensus 96 wEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~ 153 (195)
T PF12761_consen 96 WEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE 153 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 357777777787777777777765541 111 22445555555555555443
No 413
>PRK10869 recombination and repair protein; Provisional
Probab=22.85 E-value=7.8e+02 Score=24.67 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=7.4
Q ss_pred HHHHHHhCCCchhhhHH
Q 037795 116 ALLNLESHGFDVKTVHS 132 (227)
Q Consensus 116 tl~~LE~~GFdV~~l~s 132 (227)
....|+.-.+++.....
T Consensus 273 ~~~~l~~~~~~l~~~~~ 289 (553)
T PRK10869 273 ALIQIQEASDELRHYLD 289 (553)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444444444333
No 414
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=22.81 E-value=5.2e+02 Score=28.61 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh
Q 037795 170 VELDHVVKEIKMLEESKAKLTS 191 (227)
Q Consensus 170 ~~l~e~er~I~eLe~~~~~~~~ 191 (227)
..+++++.++-+++.++..++.
T Consensus 311 ek~~~~~~~v~~~~~~le~lk~ 332 (1072)
T KOG0979|consen 311 EKLKEIEDEVEEKKNKLESLKK 332 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666655555433
No 415
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=22.67 E-value=2.3e+02 Score=23.20 Aligned_cols=41 Identities=20% Similarity=0.095 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 149 EQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 149 ~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
=++-+++.+|..++-+....+..-.+.-|.|..||-++-..
T Consensus 25 iERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqE 65 (134)
T PF08232_consen 25 IERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQE 65 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777788888888888888888888888887765543
No 416
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=22.64 E-value=5.3e+02 Score=22.69 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=22.5
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
...+..|...++.+...+......|++.
T Consensus 174 e~~~~~l~~~le~~~~~~~~~~e~f~~~ 201 (247)
T PF06705_consen 174 ESKLSELRSELEEVKRRREKGDEQFQNF 201 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 6777888888888888888888888883
No 417
>PF14075 UBN_AB: Ubinuclein conserved middle domain
Probab=22.55 E-value=2.6e+02 Score=24.93 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=31.1
Q ss_pred HHHHHHHHhC-CCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037795 114 FEALLNLESH-GFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECH 157 (227)
Q Consensus 114 ~~tl~~LE~~-GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~ 157 (227)
...+++|+.+ .++-.+++.|+.+| .+++...++.+.+.+|+.-
T Consensus 56 ~~vy~hL~~~lPc~K~tL~kr~KkL-~~~~~~~~l~e~L~KLk~a 99 (214)
T PF14075_consen 56 SAVYSHLESFLPCNKDTLLKRAKKL-RLKEQDDRLKEPLQKLKEA 99 (214)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHH
Confidence 3467888888 99999999999886 4455555565566666554
No 418
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=22.39 E-value=89 Score=29.72 Aligned_cols=46 Identities=11% Similarity=0.271 Sum_probs=21.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHH
Q 037795 167 KITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQL 216 (227)
Q Consensus 167 kle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~ 216 (227)
.+...++++|..|.+++..+..+. ..+..++.+.....+.|.|.+.
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~----~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIE----QAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666766776666544332 2223333444444445555443
No 419
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=22.38 E-value=4e+02 Score=21.10 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=14.9
Q ss_pred HHHHHHHHHhCCCchhhhHHHH
Q 037795 113 MFEALLNLESHGFDVKTVHSCL 134 (227)
Q Consensus 113 ~~~tl~~LE~~GFdV~~l~sRL 134 (227)
.+..+..|...||.+..++.-|
T Consensus 46 ~l~~I~~lr~~G~sL~eI~~~l 67 (127)
T cd01108 46 ELRFIRRARDLGFSLEEIRELL 67 (127)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH
Confidence 3455667778888887776544
No 420
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=22.31 E-value=4.6e+02 Score=22.80 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=31.5
Q ss_pred HHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhh
Q 037795 93 NVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTV 130 (227)
Q Consensus 93 ~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l 130 (227)
.+...|++|.=+.+...|..+-+.+.+|.+.=-+|..-
T Consensus 32 sl~~~v~~l~nk~d~~~yknyk~ki~eLke~lK~~~NA 69 (160)
T PF03978_consen 32 SLIEDVSKLNNKSDAEAYKNYKKKINELKEDLKDVSNA 69 (160)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 46678888988888899999999999999987777443
No 421
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.27 E-value=3.7e+02 Score=20.65 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 149 EQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 149 ~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
+....++..|..+....++|.++||..+-....|+.
T Consensus 32 ~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~ 67 (89)
T PF13747_consen 32 RKRDELEEEIQRLDADRSRLAQELDQAEARANRLEE 67 (89)
T ss_pred hhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH
Confidence 344667777777778888888887777666655555
No 422
>PRK10698 phage shock protein PspA; Provisional
Probab=22.19 E-value=5.5e+02 Score=22.66 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=7.9
Q ss_pred hhhhhhhhHHHHHHHHHHHH
Q 037795 165 QSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 165 ~skle~~l~e~er~I~eLe~ 184 (227)
..+++..+++.+..+.+.++
T Consensus 54 ~k~~er~~~~~~~~~~~~e~ 73 (222)
T PRK10698 54 KKQLTRRIEQAEAQQVEWQE 73 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444443333
No 423
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=22.15 E-value=6.7e+02 Score=28.46 Aligned_cols=9 Identities=33% Similarity=0.645 Sum_probs=5.6
Q ss_pred CCCccCccc
Q 037795 38 ENWSLPFVK 46 (227)
Q Consensus 38 ~~~~lPF~K 46 (227)
+|..|||+=
T Consensus 391 ~Gn~LPFIG 399 (1317)
T KOG0612|consen 391 SGNHLPFIG 399 (1317)
T ss_pred cCCcCCeee
Confidence 566666664
No 424
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=22.11 E-value=4.1e+02 Score=21.13 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=14.0
Q ss_pred HHHHHHHHhCCCchhhhHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCL 134 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL 134 (227)
+..+..|...||.+..++.-|
T Consensus 47 l~~I~~lr~lG~sL~eI~~~l 67 (127)
T TIGR02047 47 LAFIRNCRTLDMSLAEIRQLL 67 (127)
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 345556777888887766544
No 425
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.09 E-value=6.3e+02 Score=23.35 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=15.2
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHH
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDH 174 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e 174 (227)
++.+-.+.++++++.-+-+.++....+++++++..
T Consensus 63 l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~ 97 (246)
T KOG4657|consen 63 LKADLRETENELVKVNELKTEKEARQMGIEQEIKA 97 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444333
No 426
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=22.06 E-value=3.5e+02 Score=23.65 Aligned_cols=8 Identities=0% Similarity=0.069 Sum_probs=4.6
Q ss_pred ccCCCchh
Q 037795 101 LQVSDPTS 108 (227)
Q Consensus 101 l~idD~~s 108 (227)
+|+|-+-.
T Consensus 103 ~CCDGSDE 110 (176)
T PF12999_consen 103 ICCDGSDE 110 (176)
T ss_pred ccCCCCCC
Confidence 56666554
No 427
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=22.04 E-value=1.9e+02 Score=22.17 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=6.3
Q ss_pred HHhhhhhHHHHHHHHH
Q 037795 197 IAASKSKVDVGNENIQ 212 (227)
Q Consensus 197 i~~Lks~~~~~~e~~~ 212 (227)
|+-++.++...++++.
T Consensus 63 IA~lE~eV~~LE~~v~ 78 (88)
T PF14389_consen 63 IALLEAEVAKLEQKVL 78 (88)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334433334333
No 428
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=22.04 E-value=3.5e+02 Score=25.65 Aligned_cols=24 Identities=13% Similarity=0.190 Sum_probs=17.1
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHh
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLD 217 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~e 217 (227)
.++|-+|+.......+++.+-+++
T Consensus 291 r~~Iq~l~k~~~q~sqav~d~~~~ 314 (330)
T KOG2991|consen 291 RKEIQRLKKGLEQVSQAVGDKKDE 314 (330)
T ss_pred HHHHHHHHHHHHHHHHHhcccccc
Confidence 667888888877777777665443
No 429
>PRK14127 cell division protein GpsB; Provisional
Probab=22.02 E-value=2.6e+02 Score=22.59 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=9.5
Q ss_pred CCCchhhhHHHHHHH
Q 037795 123 HGFDVKTVHSCLSEM 137 (227)
Q Consensus 123 ~GFdV~~l~sRL~kL 137 (227)
-|||...+-.=|..+
T Consensus 21 RGYd~~EVD~FLd~V 35 (109)
T PRK14127 21 RGYDQDEVDKFLDDV 35 (109)
T ss_pred CCCCHHHHHHHHHHH
Confidence 488877666555543
No 430
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.92 E-value=3.1e+02 Score=24.63 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=12.8
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHh
Q 037795 133 CLSEMQSIKEKHEQLQEQLLEYECHIL 159 (227)
Q Consensus 133 RL~kLL~lK~~~~~~~~~~k~le~~i~ 159 (227)
-+++++-=+.+-.++++++++++++++
T Consensus 63 i~~~~liD~ekm~~~qk~m~efq~e~~ 89 (201)
T COG1422 63 ILQKLLIDQEKMKELQKMMKEFQKEFR 89 (201)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 344444434444445555555555543
No 431
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=21.70 E-value=8.6e+02 Score=25.28 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=12.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhHHHHHHH
Q 037795 151 LLEYECHILEQTSEQSKITVELDHVVKEI 179 (227)
Q Consensus 151 ~k~le~~i~e~~~e~skle~~l~e~er~I 179 (227)
++.++++|+...++...++..|+-+++.+
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~ 109 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREV 109 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333333
No 432
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=21.64 E-value=6.6e+02 Score=23.39 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=22.6
Q ss_pred hhhhHHHHHHHHHhHHhHHHHHHHHHHH
Q 037795 127 VKTVHSCLSEMQSIKEKHEQLQEQLLEY 154 (227)
Q Consensus 127 V~~l~sRL~kLL~lK~~~~~~~~~~k~l 154 (227)
|..++.-|++|-.||..|.++.++++..
T Consensus 200 i~~L~~ll~~l~~lk~eR~~~~~~Lk~k 227 (356)
T cd09237 200 IKQLEELLEDLNLIKEERQRVLKDLKQK 227 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888999999998888553
No 433
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.37 E-value=5.1e+02 Score=27.19 Aligned_cols=119 Identities=14% Similarity=0.117 Sum_probs=64.1
Q ss_pred CCchhhHHHHHHHHHHHHhCCC----chhhhHHHHHHHH----HhHHhHHHHHHHHHHHHHHHhhhhhhhhhh-------
Q 037795 104 SDPTSIFNGMFEALLNLESHGF----DVKTVHSCLSEMQ----SIKEKHEQLQEQLLEYECHILEQTSEQSKI------- 168 (227)
Q Consensus 104 dD~~s~fe~~~~tl~~LE~~GF----dV~~l~sRL~kLL----~lK~~~~~~~~~~k~le~~i~e~~~e~skl------- 168 (227)
-+..+.+.++...+.+.-.+|= -..+|..-|..|. .++..+.+-..+.+.+..+|+....+...-
T Consensus 71 a~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~ 150 (660)
T KOG4302|consen 71 AVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFL 150 (660)
T ss_pred HHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCccc
Confidence 3445555566666655555544 2234444444422 244444444445555666666655554432
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHHhH
Q 037795 169 -TVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESVA 222 (227)
Q Consensus 169 -e~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~sva 222 (227)
--+.|--.+++.+++.++..+..++...+-..-.-.+.|..-|.-...+|..++
T Consensus 151 ~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~v 205 (660)
T KOG4302|consen 151 IADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTV 205 (660)
T ss_pred ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch
Confidence 111223346666777776666666666666666666666666776666776554
No 434
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=21.29 E-value=4.9e+02 Score=21.71 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=25.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHH
Q 037795 167 KITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQ 212 (227)
Q Consensus 167 kle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~ 212 (227)
.++..+...+..|-.|+. ....--.+|.+||+++.+..++|+
T Consensus 94 ~~e~~i~~~~~~I~~Lq~----~~~~~~~ki~~Le~~i~~~~~~Ck 135 (146)
T PF08702_consen 94 ILETKIINQPSNIRVLQN----ILRSNRQKIQRLEQDIDQQERYCK 135 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhhhHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334444444444444444 223336778888888888888886
No 435
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=21.26 E-value=7.1e+02 Score=25.41 Aligned_cols=26 Identities=4% Similarity=0.134 Sum_probs=12.9
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHH
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFE 219 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~ 219 (227)
..++.+|+-+++..++.....-...+
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~ 400 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYR 400 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444443333
No 436
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=21.22 E-value=2.5e+02 Score=23.73 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 037795 149 EQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKA 187 (227)
Q Consensus 149 ~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~ 187 (227)
+..+-+++++.+......++.+.|+++...+..+++++.
T Consensus 94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q 132 (145)
T COG1730 94 EAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQ 132 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555666666655555555433
No 437
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=21.21 E-value=6.2e+02 Score=22.88 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=15.7
Q ss_pred cCCCCCCCcc-----ccCCchhhhhHHHHHHHHH
Q 037795 62 KMPQKPHFNL-----LDGSKDMYLEGLVTGYMLT 90 (227)
Q Consensus 62 ~vPQ~PHF~p-----L~~~~e~~REg~A~Glm~t 90 (227)
++|.+|+-.. ++.+..++.+++.+|-.+.
T Consensus 63 ~~~~~~~~~~~Lg~~M~~~g~~~g~~S~~G~aL~ 96 (229)
T cd07616 63 KAPSRMNNPELLGQYMIDAGNEFGPGTAYGNALI 96 (229)
T ss_pred cCCCCCChHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4566765433 2345555666666665444
No 438
>KOG1694 consensus 60s ribosomal protein L6 [Translation, ribosomal structure and biogenesis]
Probab=21.20 E-value=22 Score=30.38 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=46.2
Q ss_pred chhhhcccccccccccccCCCCCCCCCCCCCccCcccccchhhhhhhhhhcccCCCCCCC
Q 037795 10 QWNEINGRLEISTECAVNASTSNESTPEENWSLPFVKHSSILRAIEPMGVFQKMPQKPHF 69 (227)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lPF~K~s~~W~~~EsmeVFk~vPQ~PHF 69 (227)
=|++-+|+..++..|.+|. . .+..+.+|-.|.-|-|+.|=.-=|.-..++.||=
T Consensus 96 i~~~ekekyeIteq~kiDq-K-----aVDs~il~~iK~ip~lk~yl~~~f~l~~g~~Ph~ 149 (152)
T KOG1694|consen 96 IFAEEKEKYEITEQRKIDQ-K-----AVDSQILPKIKAIPQLKKYLGSVFALTNGIYPHK 149 (152)
T ss_pred hhcccccccccchhhhhhH-H-----HHHHHHHHHHhhchHhhhccchhhhccCCCCccc
Confidence 4778888889999999998 2 3566799999999999999888899999999993
No 439
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=21.17 E-value=3.8e+02 Score=22.48 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=27.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHH----HHHHHHHHHHHhH
Q 037795 162 TSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVD----VGNENIQNAQLDF 218 (227)
Q Consensus 162 ~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~----~~~e~~~~ae~eF 218 (227)
..++..++..|.+-+..|..|+.. +.-.+.--+.|..|+.... .++..+.+++..|
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~-~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ 85 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKS-AKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDS 85 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555441 0011112556777777766 4444444444443
No 440
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.17 E-value=6e+02 Score=22.83 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhhhhhhhhh
Q 037795 149 EQLLEYECHILEQTSEQSK 167 (227)
Q Consensus 149 ~~~k~le~~i~e~~~e~sk 167 (227)
++++++++.+.+-..+...
T Consensus 72 ekm~~~qk~m~efq~e~~e 90 (201)
T COG1422 72 EKMKELQKMMKEFQKEFRE 90 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555554444444433
No 441
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=21.13 E-value=4.4e+02 Score=21.13 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=40.3
Q ss_pred HHHHhCCCchhhhHHHHHHHHH--------hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 118 LNLESHGFDVKTVHSCLSEMQS--------IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 118 ~~LE~~GFdV~~l~sRL~kLL~--------lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
..|.+..|+++.+-.+|.+++. ==.+..++.+.+..++..+........|++.++.+==.+|..+..++.+
T Consensus 33 ~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~r 111 (132)
T PF10392_consen 33 TPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLER 111 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4556667788888888877432 2233333444445555555555666666666655555555555554444
No 442
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=20.91 E-value=6.3e+02 Score=22.82 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=24.4
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHHHhHhh
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFESVAVC 224 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa 224 (227)
...++.|+..++..++-+.+++.+..++-..
T Consensus 164 ERsVakLeke~DdlE~kl~~~k~ky~~~~~e 194 (205)
T KOG1003|consen 164 ERRVAKLEKERDDLEEKLEEAKEKYEEAKKE 194 (205)
T ss_pred HHHHHHHcccHHHHHHhhHHHHHHHHHHHHH
Confidence 6778889999999988888888877666443
No 443
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=20.70 E-value=3.9e+02 Score=27.42 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=15.8
Q ss_pred cccCCCCCCCccccCCchhhhhH
Q 037795 60 FQKMPQKPHFNLLDGSKDMYLEG 82 (227)
Q Consensus 60 Fk~vPQ~PHF~pL~~~~e~~REg 82 (227)
.|-|||.+ .++|+..-.-+=||
T Consensus 319 lRNvP~~~-~RGlFGAIAGFIEg 340 (550)
T PF00509_consen 319 LRNVPEIQ-TRGLFGAIAGFIEG 340 (550)
T ss_dssp -BSSCCST-TTTTTSTBTTTBHS
T ss_pred cccccccc-ccchHHHHHHHHhc
Confidence 56899988 88888766666554
No 444
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.69 E-value=5.9e+02 Score=24.25 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh---hhhHHHhhhhhHHHHHHHHHHH
Q 037795 143 KHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK---NESEIAASKSKVDVGNENIQNA 214 (227)
Q Consensus 143 ~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~---~d~ei~~Lks~~~~~~e~~~~a 214 (227)
....|.++-.++++-+.....+..++-+.+-+-.+ ||-++|+.++.. .+..|.+++++.+.|.+.+-++
T Consensus 123 ~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~---Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~ 194 (300)
T KOG2629|consen 123 DKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS---ELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNM 194 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcc
Confidence 33334444444444444444444444444222222 333333333222 2444455555555555444443
No 445
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.55 E-value=6e+02 Score=24.69 Aligned_cols=27 Identities=22% Similarity=0.237 Sum_probs=17.2
Q ss_pred hcccCCCchhhHHHHHHHHHHHHhCCCch
Q 037795 99 SKLQVSDPTSIFNGMFEALLNLESHGFDV 127 (227)
Q Consensus 99 ~~l~idD~~s~fe~~~~tl~~LE~~GFdV 127 (227)
.+|+-.+..+-.+-|.. ..||++||.=
T Consensus 284 edlReqTHtrhYElyRr--~kL~~Mgf~d 310 (406)
T KOG3859|consen 284 EDLREQTHTRHYELYRR--CKLEEMGFKD 310 (406)
T ss_pred HHHhhhccccchHHHHH--HHHHHcCCcc
Confidence 44555555566666654 5799999943
No 446
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=20.40 E-value=8e+02 Score=23.87 Aligned_cols=81 Identities=23% Similarity=0.367 Sum_probs=42.6
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHH--H
Q 037795 134 LSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNEN--I 211 (227)
Q Consensus 134 L~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~--~ 211 (227)
+++|-.|.-.+.++++.|..++-+-.. ..|+.. +++..+....++. ...-+++.+.=+..+++++.+- +
T Consensus 143 ~~elK~i~hh~KKLEgRRldyD~kkkk----~~K~~d--EelrqA~eKfEES---kE~aE~sM~nlle~d~eqvsqL~~L 213 (366)
T KOG1118|consen 143 LKELKDIQHHRKKLEGRRLDYDYKKKK----QGKIKD--EELRQALEKFEES---KELAEDSMFNLLENDVEQVSQLSAL 213 (366)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHH----hccCCh--HHHHHHHHHHHHH---HHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 455666666666666666666554111 111111 1222222222221 1112377777777888888764 4
Q ss_pred HHHHHhHHHhHh
Q 037795 212 QNAQLDFESVAV 223 (227)
Q Consensus 212 ~~ae~eF~svaa 223 (227)
-.|+++|+.-++
T Consensus 214 i~aqLdfhrqs~ 225 (366)
T KOG1118|consen 214 IQAQLDFHRQST 225 (366)
T ss_pred HHHHHHHHHHHH
Confidence 488999986543
No 447
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=20.38 E-value=5.7e+02 Score=22.13 Aligned_cols=80 Identities=8% Similarity=0.150 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh---hhhHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 144 HEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK---NESEIAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 144 ~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~---~d~ei~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
+-++.+...++.+.+.....++.+.+...+..-+.....+.++...... ...++-+++..+....+.+..++.+...
T Consensus 107 rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~~~Y~~ 186 (251)
T cd07653 107 RKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAKNEYAA 186 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555544444444444433333333333333322222111 1245556666666666666666666655
Q ss_pred hHh
Q 037795 221 VAV 223 (227)
Q Consensus 221 vaa 223 (227)
.+.
T Consensus 187 ~l~ 189 (251)
T cd07653 187 QLQ 189 (251)
T ss_pred HHH
Confidence 443
No 448
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=20.38 E-value=4.9e+02 Score=21.39 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=5.6
Q ss_pred HHHHhHHHhHhhhC
Q 037795 213 NAQLDFESVAVCLG 226 (227)
Q Consensus 213 ~ae~eF~svaaa~~ 226 (227)
.++.+....+..+|
T Consensus 81 ~~q~EldDLL~ll~ 94 (136)
T PF04871_consen 81 EAQSELDDLLVLLG 94 (136)
T ss_pred hhhhhHHHHHHHHH
Confidence 33444444443333
No 449
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=20.18 E-value=2.5e+02 Score=27.70 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 148 QEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 148 ~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
..++++..+++.+......++++...++...|.+|+.+.+..
T Consensus 282 Ir~Lqq~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~ 323 (411)
T KOG1318|consen 282 IRELQQTLQRARELENRQKKLESTNQELALRIEELKSEAGRH 323 (411)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHh
Confidence 344555556667777777888888888999999999988875
No 450
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.08 E-value=4.6e+02 Score=23.42 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=44.7
Q ss_pred HHHHHHhCCCchhhhHHHHHHH--HHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh-
Q 037795 116 ALLNLESHGFDVKTVHSCLSEM--QSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK- 192 (227)
Q Consensus 116 tl~~LE~~GFdV~~l~sRL~kL--L~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~- 192 (227)
+...||.|=||.++.--.|.+- -.-|.... +..++++-|.....+..||.++ .+|-.-.++.-.++-.
T Consensus 3 s~~~le~~lf~LkF~sk~L~r~a~kceKeEK~----Ek~K~kkAi~kgN~dvArIyAe-----NAIRkkne~~n~Lrlss 73 (203)
T KOG3232|consen 3 STDKLENHLFDLKFTSKQLQRQAKKCEKEEKA----EKAKLKKAIQKGNMDVARIYAE-----NAIRKKNEAVNYLRLSS 73 (203)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHhcchHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 3456888888888776555431 11122111 3345566677777888888765 4666666655554332
Q ss_pred -hhhHHHhhhhh
Q 037795 193 -NESEIAASKSK 203 (227)
Q Consensus 193 -~d~ei~~Lks~ 203 (227)
-|+--+|++..
T Consensus 74 RvDAVaaRvqTa 85 (203)
T KOG3232|consen 74 RVDAVAARVQTA 85 (203)
T ss_pred HHHHHHHHHHHH
Confidence 25555554443
No 451
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=20.03 E-value=9.6e+02 Score=24.63 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=39.7
Q ss_pred cCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHH----hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHH
Q 037795 102 QVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQS----IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVK 177 (227)
Q Consensus 102 ~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~----lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er 177 (227)
+++|-...+..+++++..= -|-+++.+++-++.|-. +-++...+....++|+.+|...... ++....+++-
T Consensus 309 k~eeL~~~L~~~lea~q~a--gkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~r---ld~qEqtL~~ 383 (531)
T PF15450_consen 309 KAEELATKLQENLEAMQLA--GKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWR---LDLQEQTLNL 383 (531)
T ss_pred hHHHHHHHHHHHHHHHHHh--hhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHH
Confidence 3444445555555554433 67788888887776542 3334444555555555554443332 3333333444
Q ss_pred HHHHHHH
Q 037795 178 EIKMLEE 184 (227)
Q Consensus 178 ~I~eLe~ 184 (227)
+|.+++-
T Consensus 384 rL~e~~~ 390 (531)
T PF15450_consen 384 RLSEAKN 390 (531)
T ss_pred HHHHHHH
Confidence 4444433
No 452
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=20.01 E-value=3.2e+02 Score=20.61 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=14.7
Q ss_pred HHHHHHHHhCCCchhhhHHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL~ 135 (227)
+..+..|...||.+..++.-++
T Consensus 47 l~~I~~lr~~G~~l~~I~~~l~ 68 (96)
T cd04768 47 LQFILFLRELGFSLAEIKELLD 68 (96)
T ss_pred HHHHHHHHHcCCCHHHHHHHHh
Confidence 3455667788888887765443
No 453
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=20.01 E-value=4.2e+02 Score=26.80 Aligned_cols=52 Identities=15% Similarity=0.269 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhh----------hhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 170 VELDHVVKEIKMLEESKAKLTSKN----------ESEIAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 170 ~~l~e~er~I~eLe~~~~~~~~~~----------d~ei~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
.+++.+|..|.+|+.+++.+...+ .+.+..+..+.+.+++.+.....+....
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l 624 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEA 624 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666655543332 1146666666666666666665555444
Done!