Query 037795
Match_columns 227
No_of_seqs 49 out of 51
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 06:59:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 92.8 1.6 5.5E-05 37.5 12.1 47 140-186 37-83 (256)
2 3hnw_A Uncharacterized protein 92.7 1.6 5.3E-05 35.2 11.1 68 137-204 63-133 (138)
3 3vp9_A General transcriptional 89.8 0.44 1.5E-05 36.5 4.8 76 126-208 4-88 (92)
4 3u1c_A Tropomyosin alpha-1 cha 89.3 5.5 0.00019 30.1 10.7 81 135-215 9-99 (101)
5 3u59_A Tropomyosin beta chain; 89.1 5.1 0.00018 30.1 10.4 81 135-215 9-99 (101)
6 2dfs_A Myosin-5A; myosin-V, in 88.1 3.5 0.00012 42.7 11.5 21 195-215 1023-1043(1080)
7 3swk_A Vimentin; cytoskeleton, 87.6 2.7 9.1E-05 31.2 7.7 71 151-221 2-75 (86)
8 3na7_A HP0958; flagellar bioge 87.5 13 0.00043 31.8 13.6 83 123-205 85-167 (256)
9 3mq9_A Bone marrow stromal ant 86.3 10 0.00034 34.4 12.4 106 115-220 359-468 (471)
10 1ic2_A Tropomyosin alpha chain 85.2 5.7 0.0002 28.7 8.3 56 135-190 6-61 (81)
11 3ol1_A Vimentin; structural ge 85.1 9.3 0.00032 29.6 10.0 60 148-207 19-81 (119)
12 3hnw_A Uncharacterized protein 84.8 7.6 0.00026 31.1 9.6 69 124-192 54-125 (138)
13 3uul_A Utrophin; spectrin repe 84.8 7.4 0.00025 28.0 8.9 51 107-157 15-65 (118)
14 3gp4_A Transcriptional regulat 82.4 12 0.00041 29.4 9.8 23 114-136 49-71 (142)
15 3o0z_A RHO-associated protein 82.1 21 0.00072 29.8 11.7 76 140-215 60-138 (168)
16 3oja_B Anopheles plasmodium-re 82.0 14 0.00046 34.3 11.5 15 89-103 405-419 (597)
17 3a7p_A Autophagy protein 16; c 80.7 16 0.00054 30.2 10.1 77 135-211 68-148 (152)
18 3uun_A Dystrophin; triple heli 80.6 13 0.00045 26.5 10.2 53 105-157 13-65 (119)
19 2dfs_A Myosin-5A; myosin-V, in 80.6 16 0.00056 37.8 12.5 61 148-208 983-1043(1080)
20 3oja_B Anopheles plasmodium-re 80.2 8.6 0.00029 35.6 9.5 23 194-216 557-579 (597)
21 3ghg_A Fibrinogen alpha chain; 80.1 6.7 0.00023 38.3 8.8 19 194-212 144-162 (562)
22 3qh9_A Liprin-beta-2; coiled-c 79.4 6.3 0.00022 29.5 6.7 54 147-204 24-77 (81)
23 2wt7_B Transcription factor MA 77.7 12 0.00042 28.2 8.0 61 127-187 26-86 (90)
24 1x79_B RAB GTPase binding effe 77.6 19 0.00064 28.3 9.2 74 138-211 16-93 (112)
25 3oja_A Leucine-rich immune mol 76.5 30 0.001 31.4 11.8 23 196-218 450-472 (487)
26 2v71_A Nuclear distribution pr 76.0 18 0.00061 30.7 9.4 7 196-202 96-102 (189)
27 3s4r_A Vimentin; alpha-helix, 75.2 20 0.00068 26.8 8.5 36 148-183 55-90 (93)
28 3tnu_B Keratin, type II cytosk 73.6 29 0.001 26.8 9.8 10 123-132 27-36 (129)
29 1t2k_D Cyclic-AMP-dependent tr 72.7 15 0.0005 25.1 6.7 47 140-186 13-59 (61)
30 3iv1_A Tumor susceptibility ge 72.2 16 0.00055 27.0 7.2 42 140-181 30-71 (78)
31 1lwu_C Fibrinogen gamma chain; 71.8 7.4 0.00025 35.3 6.4 47 145-191 8-54 (323)
32 1i84_S Smooth muscle myosin he 71.2 12 0.00041 38.8 8.5 6 50-55 779-784 (1184)
33 1jnm_A Proto-oncogene C-JUN; B 70.3 14 0.00048 25.3 6.2 48 138-185 11-58 (62)
34 3qne_A Seryl-tRNA synthetase, 69.7 21 0.00071 34.1 9.3 31 196-226 79-109 (485)
35 2efr_A General control protein 68.5 47 0.0016 27.1 10.9 75 147-221 47-124 (155)
36 1wle_A Seryl-tRNA synthetase; 68.2 29 0.00099 33.1 9.9 28 198-225 126-153 (501)
37 3qh9_A Liprin-beta-2; coiled-c 67.9 25 0.00086 26.2 7.4 53 134-186 25-77 (81)
38 3tnu_A Keratin, type I cytoske 67.4 30 0.001 26.9 8.3 7 109-115 14-20 (131)
39 3q8t_A Beclin-1; autophagy, AT 66.7 38 0.0013 25.3 10.9 59 164-222 26-87 (96)
40 3u1c_A Tropomyosin alpha-1 cha 66.3 37 0.0013 25.5 8.3 29 151-179 4-32 (101)
41 3nmd_A CGMP dependent protein 65.6 16 0.00055 26.6 5.9 13 172-184 49-61 (72)
42 1deq_A Fibrinogen (alpha chain 62.7 86 0.0029 29.4 11.6 20 167-186 110-129 (390)
43 3gpv_A Transcriptional regulat 62.4 26 0.00089 27.5 7.2 22 114-135 63-84 (148)
44 3tnu_B Keratin, type II cytosk 62.3 29 0.00099 26.8 7.3 25 160-184 47-71 (129)
45 4dnd_A Syntaxin-10, SYN10; str 62.0 45 0.0015 26.3 8.4 89 129-218 35-128 (130)
46 2lw1_A ABC transporter ATP-bin 61.7 35 0.0012 24.7 7.3 49 171-219 23-80 (89)
47 3haj_A Human pacsin2 F-BAR; pa 61.7 67 0.0023 29.7 10.9 32 194-225 184-215 (486)
48 2wt7_A Proto-oncogene protein 61.1 37 0.0013 23.3 7.1 47 138-184 12-58 (63)
49 3swf_A CGMP-gated cation chann 60.8 26 0.00088 25.7 6.2 53 168-220 5-57 (74)
50 2dq0_A Seryl-tRNA synthetase; 59.8 43 0.0015 31.3 9.2 32 195-226 76-107 (455)
51 4emc_A Monopolin complex subun 59.5 18 0.00062 30.8 6.0 47 147-193 11-57 (190)
52 1q08_A Zn(II)-responsive regul 59.0 45 0.0015 23.7 7.9 22 114-135 6-27 (99)
53 1ic2_A Tropomyosin alpha chain 58.2 45 0.0015 23.9 7.2 11 197-207 43-53 (81)
54 1fzc_C Fibrin; blood coagulati 56.5 7.4 0.00025 35.3 3.3 45 147-191 2-46 (319)
55 3vkg_A Dynein heavy chain, cyt 56.4 35 0.0012 39.7 9.3 16 76-92 1857-1872(3245)
56 3uux_B Mitochondrial division 56.4 73 0.0025 28.0 9.5 46 165-214 172-217 (242)
57 2olt_A Hypothetical protein; s 55.3 83 0.0029 25.6 9.5 26 59-85 7-32 (227)
58 3ol1_A Vimentin; structural ge 54.6 71 0.0024 24.5 9.0 30 175-204 88-117 (119)
59 2fxo_A Myosin heavy chain, car 53.1 77 0.0026 24.5 12.9 25 197-221 99-123 (129)
60 3a5t_A Transcription factor MA 52.8 5 0.00017 31.3 1.4 46 128-173 37-82 (107)
61 1gk4_A Vimentin; intermediate 52.3 58 0.002 23.5 7.0 22 150-171 27-48 (84)
62 1r8e_A Multidrug-efflux transp 52.3 29 0.001 28.8 6.2 22 114-135 53-74 (278)
63 2p2u_A HOST-nuclease inhibitor 51.9 35 0.0012 27.9 6.4 24 178-201 24-47 (171)
64 1ci6_A Transcription factor AT 50.2 40 0.0014 23.2 5.6 41 144-184 18-58 (63)
65 1x8y_A Lamin A/C; structural p 49.6 66 0.0023 23.4 7.0 33 149-184 28-60 (86)
66 1r8d_A Transcription activator 49.6 18 0.00061 26.7 4.0 20 116-135 51-70 (109)
67 2v66_B Nuclear distribution pr 49.1 77 0.0026 24.6 7.7 52 154-209 40-91 (111)
68 3lay_A Zinc resistance-associa 48.6 77 0.0026 26.2 8.1 25 195-219 113-137 (175)
69 1m1j_B Fibrinogen beta chain; 48.5 1.2E+02 0.004 28.9 10.3 12 196-207 183-194 (464)
70 3q0x_A Centriole protein; cent 48.1 51 0.0017 28.6 7.1 55 149-203 171-225 (228)
71 1m1j_A Fibrinogen alpha subuni 47.8 1.1E+02 0.0038 29.4 9.9 19 194-212 145-163 (491)
72 1ses_A Seryl-tRNA synthetase; 47.5 1.6E+02 0.0054 27.1 10.9 35 118-157 16-50 (421)
73 2ve7_A Kinetochore protein HEC 47.3 1.5E+02 0.0051 26.2 11.8 28 63-99 93-121 (315)
74 3u59_A Tropomyosin beta chain; 47.3 84 0.0029 23.2 8.8 19 153-171 6-24 (101)
75 3ghg_A Fibrinogen alpha chain; 47.3 1.5E+02 0.0051 29.0 10.8 40 173-216 113-152 (562)
76 3k29_A Putative uncharacterize 46.9 1.3E+02 0.0043 25.2 10.3 59 132-192 5-63 (169)
77 3sjb_C Golgi to ER traffic pro 46.3 46 0.0016 25.3 5.8 32 194-225 55-86 (93)
78 1cxz_B Protein (PKN); protein- 46.1 90 0.0031 23.3 7.4 55 129-190 29-83 (86)
79 3vkg_A Dynein heavy chain, cyt 45.5 2.1E+02 0.0071 33.6 13.2 18 85-102 1862-1879(3245)
80 1wle_A Seryl-tRNA synthetase; 45.0 1.6E+02 0.0056 27.9 10.8 9 118-126 55-63 (501)
81 1gd2_E Transcription factor PA 44.7 38 0.0013 24.2 4.9 15 149-163 29-43 (70)
82 4abm_A Charged multivesicular 44.6 87 0.003 22.6 7.3 69 137-214 8-78 (79)
83 3lss_A Seryl-tRNA synthetase; 44.1 96 0.0033 29.5 9.0 30 197-226 113-142 (484)
84 3qne_A Seryl-tRNA synthetase, 43.5 45 0.0015 31.8 6.6 24 163-186 78-101 (485)
85 1uur_A Stata protein, STAT pro 43.4 1.3E+02 0.0043 28.8 9.6 87 126-218 6-103 (473)
86 3mov_A Lamin-B1; LMNB1, B-type 43.2 49 0.0017 24.8 5.5 25 132-156 9-33 (95)
87 3he4_A Synzip6; heterodimeric 43.1 6.9 0.00024 26.7 0.7 47 139-185 7-53 (56)
88 3oja_A Leucine-rich immune mol 42.8 1.3E+02 0.0045 27.1 9.4 33 194-226 455-487 (487)
89 2b9c_A Striated-muscle alpha t 42.6 1.3E+02 0.0044 24.1 10.2 47 169-215 72-121 (147)
90 3efg_A Protein SLYX homolog; x 42.1 73 0.0025 23.0 6.2 41 149-189 14-54 (78)
91 2p22_C Protein SRN2; endosome, 41.8 1.5E+02 0.0052 24.7 11.4 27 194-220 127-153 (192)
92 2jee_A YIIU; FTSZ, septum, coi 41.7 1E+02 0.0036 22.7 8.6 20 194-213 54-73 (81)
93 2dq3_A Seryl-tRNA synthetase; 41.4 1.2E+02 0.0041 27.9 9.0 31 195-225 75-105 (425)
94 3plt_A Sphingolipid long chain 41.4 1.8E+02 0.0061 25.3 10.0 30 128-157 97-126 (234)
95 1x8y_A Lamin A/C; structural p 40.9 78 0.0027 23.0 6.2 15 174-188 32-46 (86)
96 1t6f_A Geminin; coiled-coil, c 40.6 44 0.0015 21.5 4.1 16 193-208 19-34 (37)
97 3o0z_A RHO-associated protein 40.5 1.6E+02 0.0054 24.5 12.5 50 139-188 31-80 (168)
98 2ocy_A RAB guanine nucleotide 40.1 1.5E+02 0.0052 24.2 9.6 27 194-220 107-133 (154)
99 1m1j_C Fibrinogen gamma chain; 39.9 44 0.0015 31.2 5.8 45 146-190 88-132 (409)
100 2efk_A CDC42-interacting prote 39.8 1.6E+02 0.0055 24.4 12.4 26 196-221 166-191 (301)
101 2xv5_A Lamin-A/C; structural p 39.2 81 0.0028 22.6 6.0 49 148-200 4-52 (74)
102 1go4_E MAD1 (mitotic arrest de 38.5 71 0.0024 24.5 5.8 27 150-176 13-39 (100)
103 2x3v_A Syndapin I, protein kin 37.1 2E+02 0.0068 24.6 11.0 26 195-220 183-208 (337)
104 2dq0_A Seryl-tRNA synthetase; 36.9 53 0.0018 30.7 5.9 6 120-125 18-23 (455)
105 2e7s_A RAB guanine nucleotide 36.6 1.3E+02 0.0045 24.2 7.4 23 194-216 95-117 (135)
106 3nmd_A CGMP dependent protein 36.5 91 0.0031 22.6 5.8 12 194-205 53-64 (72)
107 2v71_A Nuclear distribution pr 35.1 2E+02 0.0069 24.1 12.3 20 196-215 89-108 (189)
108 4h22_A Leucine-rich repeat fli 34.8 1.1E+02 0.0038 23.6 6.4 16 159-174 54-69 (103)
109 2lw1_A ABC transporter ATP-bin 34.4 96 0.0033 22.4 5.8 21 151-171 24-44 (89)
110 3a5t_A Transcription factor MA 34.0 11 0.00038 29.3 0.7 48 171-222 59-106 (107)
111 2bnx_A Diaphanous protein homo 34.0 0.88 3E-05 41.6 -6.6 67 60-136 262-331 (386)
112 2efl_A Formin-binding protein 34.0 2E+02 0.0068 23.8 13.3 24 147-170 121-144 (305)
113 1deq_A Fibrinogen (alpha chain 34.0 2.6E+02 0.0087 26.2 9.9 12 128-139 63-74 (390)
114 3efg_A Protein SLYX homolog; x 33.8 78 0.0027 22.8 5.2 23 194-216 41-63 (78)
115 4h22_A Leucine-rich repeat fli 33.8 1.5E+02 0.0052 22.8 7.1 63 153-215 13-78 (103)
116 3ra3_A P1C; coiled coil domain 33.6 46 0.0016 19.9 3.1 23 168-190 5-27 (28)
117 1q06_A Transcriptional regulat 33.5 1.6E+02 0.0054 22.5 7.8 21 115-135 48-68 (135)
118 1m1j_C Fibrinogen gamma chain; 33.5 2.2E+02 0.0077 26.4 9.5 8 197-204 121-128 (409)
119 3a7o_A Autophagy protein 16; c 33.0 90 0.0031 22.8 5.3 50 167-216 22-74 (75)
120 1fxk_A Prefoldin; archaeal pro 32.6 1.4E+02 0.0047 21.4 7.9 26 194-219 78-103 (107)
121 3m9b_A Proteasome-associated A 31.6 70 0.0024 28.2 5.4 44 148-191 53-96 (251)
122 2e7s_A RAB guanine nucleotide 31.5 72 0.0025 25.7 5.1 8 134-141 24-31 (135)
123 1gk4_A Vimentin; intermediate 31.1 1.5E+02 0.005 21.3 7.5 21 137-157 3-23 (84)
124 2vz4_A Tipal, HTH-type transcr 30.7 62 0.0021 23.7 4.3 20 115-134 49-68 (108)
125 1fxk_A Prefoldin; archaeal pro 30.5 98 0.0033 22.3 5.4 19 167-185 69-87 (107)
126 3lss_A Seryl-tRNA synthetase; 29.9 1.4E+02 0.0048 28.3 7.6 34 119-156 25-58 (484)
127 1m1j_B Fibrinogen beta chain; 29.6 3.7E+02 0.013 25.5 11.6 25 194-218 167-191 (464)
128 2i1j_A Moesin; FERM, coiled-co 29.0 18 0.00061 34.8 1.3 28 194-221 432-459 (575)
129 3cue_D Transport protein parti 28.9 45 0.0015 27.9 3.6 50 83-142 26-75 (193)
130 1wt6_A Myotonin-protein kinase 28.7 1.6E+02 0.0054 21.9 6.1 7 130-136 15-21 (81)
131 3viq_B Mating-type switching p 28.5 1.1E+02 0.0038 22.7 5.3 44 140-184 6-49 (85)
132 1ik9_A DNA repair protein XRCC 28.4 2.7E+02 0.0091 23.5 11.7 23 165-187 177-199 (213)
133 2dq3_A Seryl-tRNA synthetase; 28.1 93 0.0032 28.6 5.9 33 119-155 17-50 (425)
134 1ses_A Seryl-tRNA synthetase; 27.6 1.1E+02 0.0039 28.0 6.4 75 148-226 27-102 (421)
135 3a7p_A Autophagy protein 16; c 27.5 2.5E+02 0.0087 22.9 9.5 35 152-186 71-105 (152)
136 3vem_A Helicase protein MOM1; 27.2 2.3E+02 0.0078 22.3 7.7 11 175-185 66-76 (115)
137 2cr7_A Paired amphipathic heli 27.1 89 0.0031 22.4 4.5 44 95-139 17-60 (80)
138 3l4q_C Phosphatidylinositol 3- 27.0 2.3E+02 0.0078 23.5 7.5 37 165-201 119-155 (170)
139 2dgc_A Protein (GCN4); basic d 26.7 1.6E+02 0.0054 20.3 5.8 35 137-171 18-52 (63)
140 1x79_B RAB GTPase binding effe 26.3 2.3E+02 0.0078 22.0 7.7 31 190-220 40-70 (112)
141 3gn4_A Myosin-VI; unconvention 25.7 2.7E+02 0.0092 22.6 8.1 91 130-225 51-144 (148)
142 1dh3_A Transcription factor CR 25.4 1.2E+02 0.0041 20.3 4.7 35 139-173 12-46 (55)
143 3vlc_E Golgi to ER traffic pro 24.0 46 0.0016 25.4 2.5 59 166-224 26-92 (94)
144 4dyl_A Tyrosine-protein kinase 23.8 3.9E+02 0.013 23.9 9.3 7 211-217 213-219 (406)
145 4etp_A Kinesin-like protein KA 23.6 1.6E+02 0.0053 27.0 6.5 25 147-171 15-39 (403)
146 3hh0_A Transcriptional regulat 23.5 97 0.0033 24.2 4.5 20 115-134 52-71 (146)
147 2eqb_B RAB guanine nucleotide 23.2 2.5E+02 0.0085 21.3 10.2 21 194-214 75-95 (97)
148 2bnx_A Diaphanous protein homo 23.1 20 0.00067 32.6 0.3 39 102-144 247-285 (386)
149 2b5u_A Colicin E3; high resolu 22.9 4.5E+02 0.015 25.6 9.6 54 158-215 316-369 (551)
150 2v4h_A NF-kappa-B essential mo 22.8 2.7E+02 0.0093 21.6 8.2 13 194-206 89-101 (110)
151 3ghg_C Fibrinogen gamma chain; 22.8 1.4E+02 0.0049 27.9 6.2 43 147-189 89-131 (411)
152 1ci6_A Transcription factor AT 22.6 1.9E+02 0.0064 19.7 5.6 27 160-186 27-53 (63)
153 2w6b_A RHO guanine nucleotide 22.6 2E+02 0.0068 20.0 6.1 45 131-175 6-50 (56)
154 2i1j_A Moesin; FERM, coiled-co 22.5 52 0.0018 31.6 3.2 53 137-189 323-375 (575)
155 1gk6_A Vimentin; intermediate 22.4 97 0.0033 21.0 3.7 27 154-183 5-31 (59)
156 4akg_A Glutathione S-transfera 22.3 2.7E+02 0.0091 32.0 9.1 31 194-224 2197-2227(2695)
157 1lwu_C Fibrinogen gamma chain; 22.3 2.1E+02 0.0071 25.8 6.9 28 158-185 28-55 (323)
158 1jcd_A Major outer membrane li 22.1 1.9E+02 0.0064 19.5 6.0 18 196-213 33-50 (52)
159 1l8d_A DNA double-strand break 21.9 2.3E+02 0.0079 20.5 9.2 25 138-162 20-44 (112)
160 1sz7_A BET3 homolog, trafficki 21.7 36 0.0012 28.8 1.7 54 79-143 20-73 (200)
161 2czy_A Paired amphipathic heli 21.6 1.2E+02 0.004 21.5 4.2 44 95-139 11-54 (77)
162 2fxo_A Myosin heavy chain, car 21.0 2.8E+02 0.0097 21.1 10.6 11 194-204 110-120 (129)
163 4b4t_K 26S protease regulatory 20.8 1.1E+02 0.0037 28.3 4.9 43 147-189 47-89 (428)
164 3uux_B Mitochondrial division 20.8 4.3E+02 0.015 23.1 8.8 49 137-187 167-215 (242)
165 2xu6_A MDV1 coiled coil; prote 20.6 1.8E+02 0.0061 21.1 5.0 44 170-217 21-64 (72)
166 1t3j_A Mitofusin 1; coiled coi 20.3 1.2E+02 0.0039 23.1 4.1 16 201-216 77-92 (96)
167 3plt_A Sphingolipid long chain 20.1 4.3E+02 0.015 22.9 11.2 43 124-166 61-107 (234)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.81 E-value=1.6 Score=37.52 Aligned_cols=47 Identities=17% Similarity=0.149 Sum_probs=22.0
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESK 186 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~ 186 (227)
+.+....+.+....++..+.+...+..+++..+++....|...+.++
T Consensus 37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444455555555555555444444
No 2
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.71 E-value=1.6 Score=35.17 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=37.4
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh---hhHHHhhhhhH
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN---ESEIAASKSKV 204 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~---d~ei~~Lks~~ 204 (227)
-|-|=+.+-++..+...++..+.+...+...+++++.....++.++++++..++.+. ..+|.+|+++.
T Consensus 63 ALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 63 YLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555566666666666666666666666555544432 44455555443
No 3
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=89.84 E-value=0.44 Score=36.47 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=39.4
Q ss_pred chhhhHHHHHHHHH-hHHhHHHHHHH--------HHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhH
Q 037795 126 DVKTVHSCLSEMQS-IKEKHEQLQEQ--------LLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESE 196 (227)
Q Consensus 126 dV~~l~sRL~kLL~-lK~~~~~~~~~--------~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~e 196 (227)
++.+...||++||. ||.....+..+ .++++-+|.....|+..+... +.+|+++-.++|..=+.|
T Consensus 4 ~~~~~~~Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~t-------vyeLE~~h~kmKq~YEeE 76 (92)
T 3vp9_A 4 SVSNTQNKLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNT-------VYERELTHRKMKDAYEEE 76 (92)
T ss_dssp -------------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 34455679999987 55444332222 246777777666666555544 666666666677777899
Q ss_pred HHhhhhhHHHHH
Q 037795 197 IAASKSKVDVGN 208 (227)
Q Consensus 197 i~~Lks~~~~~~ 208 (227)
|++|+.+.+.-.
T Consensus 77 I~rLr~eLe~r~ 88 (92)
T 3vp9_A 77 IKHLKLGLEQRD 88 (92)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHcC
Confidence 999998877543
No 4
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.34 E-value=5.5 Score=30.13 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=58.7
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh----------hhhHHHhhhhhH
Q 037795 135 SEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK----------NESEIAASKSKV 204 (227)
Q Consensus 135 ~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~----------~d~ei~~Lks~~ 204 (227)
.||..+|....+..+....++.++...+....+++.++..+.++|..++.++...... .++.....++++
T Consensus 9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev 88 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEV 88 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888888888888888888888888888899999999999998888876664322 134444455566
Q ss_pred HHHHHHHHHHH
Q 037795 205 DVGNENIQNAQ 215 (227)
Q Consensus 205 ~~~~e~~~~ae 215 (227)
.+++-.|+-.+
T Consensus 89 ~~L~RriqllE 99 (101)
T 3u1c_A 89 ASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66666555443
No 5
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.12 E-value=5.1 Score=30.07 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=59.4
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh----------hhhHHHhhhhhH
Q 037795 135 SEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK----------NESEIAASKSKV 204 (227)
Q Consensus 135 ~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~----------~d~ei~~Lks~~ 204 (227)
.||..+|....+..+....++.++...+....+++.++..+.++|..++.++...... ..+.....+++|
T Consensus 9 kKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ev 88 (101)
T 3u59_A 9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEV 88 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888899999999999999999999999999999999999999888876654222 133344445556
Q ss_pred HHHHHHHHHHH
Q 037795 205 DVGNENIQNAQ 215 (227)
Q Consensus 205 ~~~~e~~~~ae 215 (227)
.+++-.|+-++
T Consensus 89 asLnRriqllE 99 (101)
T 3u59_A 89 ASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 66666555443
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.06 E-value=3.5 Score=42.75 Aligned_cols=21 Identities=5% Similarity=0.022 Sum_probs=9.6
Q ss_pred hHHHhhhhhHHHHHHHHHHHH
Q 037795 195 SEIAASKSKVDVGNENIQNAQ 215 (227)
Q Consensus 195 ~ei~~Lks~~~~~~e~~~~ae 215 (227)
..++.|+++...+.+++.+++
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 7
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.60 E-value=2.7 Score=31.18 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH---HhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 151 LLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK---LTSKNESEIAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 151 ~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~---~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
+..|..+|...+.++.++..+++.+.-.+..++.+... ++.....+|..|+..++.+.=...+.+.+.++.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL 75 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESL 75 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 35677888888999999999988888888877665544 344458899999999988877777777777665
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.54 E-value=13 Score=31.84 Aligned_cols=83 Identities=14% Similarity=0.062 Sum_probs=42.9
Q ss_pred CCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhh
Q 037795 123 HGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKS 202 (227)
Q Consensus 123 ~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks 202 (227)
.|-|-+-+..--.++=.++.....+.++...+.+++.........+++.+.+.+..+.+++.++......-++++..+..
T Consensus 85 ~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~ 164 (256)
T 3na7_A 85 EIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFK 164 (256)
T ss_dssp HCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555666666666666666666655555555555555555555444444433333333444444443
Q ss_pred hHH
Q 037795 203 KVD 205 (227)
Q Consensus 203 ~~~ 205 (227)
.-+
T Consensus 165 ~r~ 167 (256)
T 3na7_A 165 KKE 167 (256)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 9
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=86.35 E-value=10 Score=34.42 Aligned_cols=106 Identities=10% Similarity=0.107 Sum_probs=61.9
Q ss_pred HHHHHHHhCCCchhhh----HHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 037795 115 EALLNLESHGFDVKTV----HSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLT 190 (227)
Q Consensus 115 ~tl~~LE~~GFdV~~l----~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~ 190 (227)
..+...-..+-++... +.+++++|.=-....+..+-..-++++|.+-..-..+++..-..--+...-|+..+.+.+
T Consensus 359 ~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (471)
T 3mq9_A 359 TAVINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEK 438 (471)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 3444444444454433 333333433222222333444445555555555555555555555566666666666666
Q ss_pred hhhhhHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 191 SKNESEIAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 191 ~~~d~ei~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
++-.+.|-.|+.++...+..+++++.+-+.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 439 AQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665778889999999999999988877553
No 10
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.23 E-value=5.7 Score=28.71 Aligned_cols=56 Identities=20% Similarity=0.200 Sum_probs=45.6
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 037795 135 SEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLT 190 (227)
Q Consensus 135 ~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~ 190 (227)
.|+..+|.......+....++.++.+.+....+++.++..+.++|..++.++....
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~e 61 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYS 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888888888888888888889998888888888888655543
No 11
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.12 E-value=9.3 Score=29.61 Aligned_cols=60 Identities=20% Similarity=0.351 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH---HhhhhhhHHHhhhhhHHHH
Q 037795 148 QEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK---LTSKNESEIAASKSKVDVG 207 (227)
Q Consensus 148 ~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~---~~~~~d~ei~~Lks~~~~~ 207 (227)
..++..+..+|...+.++.++..+++.+...+..++.+... ++.....+|..|+..++.+
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~ 81 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHH
Confidence 34455555555555556666655555555555554443222 1222244555555444443
No 12
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.84 E-value=7.6 Score=31.08 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=49.0
Q ss_pred CCchhhhHHHH---HHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 037795 124 GFDVKTVHSCL---SEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK 192 (227)
Q Consensus 124 GFdV~~l~sRL---~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~ 192 (227)
|.+-.++..-| .+|+.++.....+..+++.+++.+.+...++..+...+++..+.+.+|+++...+..+
T Consensus 54 ~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 54 SAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444 4588888888888888888888888888887777777777777777777766665444
No 13
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=84.75 E-value=7.4 Score=28.03 Aligned_cols=51 Identities=8% Similarity=-0.012 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037795 107 TSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECH 157 (227)
Q Consensus 107 ~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~ 157 (227)
..|+...-..+...+..|-|+..++..|.+.-.|...-.........+...
T Consensus 15 ~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~ 65 (118)
T 3uul_A 15 LTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQA 65 (118)
T ss_dssp HHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777767777777789999999999999888888877777776666554
No 14
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=82.38 E-value=12 Score=29.45 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=15.8
Q ss_pred HHHHHHHHhCCCchhhhHHHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCLSE 136 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL~k 136 (227)
+..+..|...||.+..++.-|..
T Consensus 49 l~~I~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 49 ILFTRQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 34556677889988887765543
No 15
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=82.10 E-value=21 Score=29.80 Aligned_cols=76 Identities=11% Similarity=0.191 Sum_probs=52.3
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh---hhHHHhhhhhHHHHHHHHHHHH
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN---ESEIAASKSKVDVGNENIQNAQ 215 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~---d~ei~~Lks~~~~~~e~~~~ae 215 (227)
+.+.+..+..+.-.++..+.......++-.+.+.+++..|..|+.++.+++... -.+.-+|.-.+...+.++.+.+
T Consensus 60 L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 60 LENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444555555556666666666666677888888889999999999888876653 5555566666666666666666
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.00 E-value=14 Score=34.28 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhcccC
Q 037795 89 LTFANVVEQTSKLQV 103 (227)
Q Consensus 89 ~tF~~l~e~v~~l~i 103 (227)
.-|..+...+.+++.
T Consensus 405 ~~~l~~~~~~~~~~~ 419 (597)
T 3oja_B 405 LQYIALTSVVEKVQR 419 (597)
T ss_dssp HHHHHHHHHHHTC--
T ss_pred HHHhhHHHHhhcccc
Confidence 333444444444433
No 17
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=80.74 E-value=16 Score=30.18 Aligned_cols=77 Identities=9% Similarity=0.168 Sum_probs=43.1
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh----hhHHHhhhhhHHHHHHH
Q 037795 135 SEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN----ESEIAASKSKVDVGNEN 210 (227)
Q Consensus 135 ~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~----d~ei~~Lks~~~~~~e~ 210 (227)
..+-.|+...+.+..+.+.++..+.++..-...+..++..+......+++++..+..+. +-=+.+...+|+..|++
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN~a 147 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMNSE 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666677777766666666666666665555555555555555554432 33344555566666665
Q ss_pred H
Q 037795 211 I 211 (227)
Q Consensus 211 ~ 211 (227)
.
T Consensus 148 n 148 (152)
T 3a7p_A 148 I 148 (152)
T ss_dssp -
T ss_pred c
Confidence 5
No 18
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=80.63 E-value=13 Score=26.51 Aligned_cols=53 Identities=11% Similarity=-0.040 Sum_probs=41.5
Q ss_pred CchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037795 105 DPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECH 157 (227)
Q Consensus 105 D~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~ 157 (227)
+-..|+.+.-..+...+..|-|+..++..|.+.-.|.............+...
T Consensus 13 el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~ 65 (119)
T 3uun_A 13 EVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQL 65 (119)
T ss_dssp HHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34567777777788888889999999999999888888877777666666554
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=80.60 E-value=16 Score=37.83 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHH
Q 037795 148 QEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGN 208 (227)
Q Consensus 148 ~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~ 208 (227)
...++.+++++.+.+.+..++..+.+..+.++.++++.+........+++..|+..++.++
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444333333334555566665555555
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.19 E-value=8.6 Score=35.62 Aligned_cols=23 Identities=4% Similarity=0.202 Sum_probs=10.2
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQNAQL 216 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~ 216 (227)
...+.+++.+...+.++++..+.
T Consensus 557 ~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 557 RAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.05 E-value=6.7 Score=38.29 Aligned_cols=19 Identities=5% Similarity=0.137 Sum_probs=12.1
Q ss_pred hhHHHhhhhhHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQ 212 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~ 212 (227)
-.+|-+|++++++--.+|+
T Consensus 144 ~~kIQRLEvDIdiqirsCK 162 (562)
T 3ghg_A 144 LVDMKRLEVDIDIKIRSCR 162 (562)
T ss_dssp HHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 5566666666666666664
No 22
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=79.45 E-value=6.3 Score=29.47 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhH
Q 037795 147 LQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKV 204 (227)
Q Consensus 147 ~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~ 204 (227)
+.-+++.|.-++.+.++|+.+.+-.+.-.--.|..|++++ +.+|++|.+|+..+
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qL----e~kd~ei~rL~~~l 77 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQV----ALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----HhhHHHHHHHHHHH
Confidence 4445555555666666666666555555555556666533 23466777666544
No 23
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=77.69 E-value=12 Score=28.22 Aligned_cols=61 Identities=10% Similarity=0.066 Sum_probs=40.7
Q ss_pred hhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 037795 127 VKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKA 187 (227)
Q Consensus 127 V~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~ 187 (227)
++..+.+|..=.-..+.+.+-.++...|+........+...+..+...+-+.+..++++..
T Consensus 26 lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 26 LKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666777777777777777777666666666666666666666666665543
No 24
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=77.56 E-value=19 Score=28.26 Aligned_cols=74 Identities=9% Similarity=0.110 Sum_probs=48.8
Q ss_pred HHhHHhHHHHHHHHHHHH----HHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHH
Q 037795 138 QSIKEKHEQLQEQLLEYE----CHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENI 211 (227)
Q Consensus 138 L~lK~~~~~~~~~~k~le----~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~ 211 (227)
.++++.-++..+.++.++ .+-+++..+.+.|...+-.-|..+.+|++.+...+...-..+++|.-.-+.+...+
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL 93 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEEL 93 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555444 44667778888999999999999999999888877765555555554444444333
No 25
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.49 E-value=30 Score=31.40 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=10.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhH
Q 037795 196 EIAASKSKVDVGNENIQNAQLDF 218 (227)
Q Consensus 196 ei~~Lks~~~~~~e~~~~ae~eF 218 (227)
+-++++.....++..+.+|....
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 450 ENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhHhcccHH
Confidence 44444445554444444444443
No 26
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=75.99 E-value=18 Score=30.66 Aligned_cols=7 Identities=0% Similarity=0.558 Sum_probs=2.5
Q ss_pred HHHhhhh
Q 037795 196 EIAASKS 202 (227)
Q Consensus 196 ei~~Lks 202 (227)
+|..|+.
T Consensus 96 el~~l~~ 102 (189)
T 2v71_A 96 DLSQTRA 102 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 27
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=75.17 E-value=20 Score=26.76 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHH
Q 037795 148 QEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLE 183 (227)
Q Consensus 148 ~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe 183 (227)
..++..+..+|...+.++.+++.+++.+...+.+++
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444444443
No 28
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.64 E-value=29 Score=26.81 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=1.2
Q ss_pred CCCchhhhHH
Q 037795 123 HGFDVKTVHS 132 (227)
Q Consensus 123 ~GFdV~~l~s 132 (227)
||=+++..+.
T Consensus 27 ~~~~l~~~k~ 36 (129)
T 3tnu_B 27 HGDDLRNTKH 36 (129)
T ss_dssp -------CHH
T ss_pred hHHHHHHHHH
Confidence 3444444333
No 29
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=72.72 E-value=15 Score=25.08 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=34.7
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESK 186 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~ 186 (227)
-..++.+.......++.++...+.+.+.+...+..+...+..|++.+
T Consensus 13 A~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 13 ASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666777788888888888888888888777777777776643
No 30
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=72.24 E-value=16 Score=27.00 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=16.7
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHH
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKM 181 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~e 181 (227)
|+..+..+....-+++.-|.....+...++.++.....+..|
T Consensus 30 LrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 30 LKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443333333333333333333333333
No 31
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=71.76 E-value=7.4 Score=35.34 Aligned_cols=47 Identities=6% Similarity=0.061 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 037795 145 EQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS 191 (227)
Q Consensus 145 ~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~ 191 (227)
.++++++.+++..|...+.....|+..++.++.+|.+|++++..++.
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777788888888888888888888888888887766654
No 32
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=71.16 E-value=12 Score=38.77 Aligned_cols=6 Identities=33% Similarity=0.672 Sum_probs=2.4
Q ss_pred hhhhhh
Q 037795 50 ILRAIE 55 (227)
Q Consensus 50 ~W~~~E 55 (227)
.|..+|
T Consensus 779 ~l~~LE 784 (1184)
T 1i84_S 779 VLAHLE 784 (1184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333444
No 33
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=70.28 E-value=14 Score=25.32 Aligned_cols=48 Identities=8% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 037795 138 QSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEES 185 (227)
Q Consensus 138 L~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~ 185 (227)
+.-..++.+..+....++.++...+.+...|...+..+...+..|.+.
T Consensus 11 ~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 11 IAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777778888888888888888888888877776666666554
No 34
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=69.74 E-value=21 Score=34.09 Aligned_cols=31 Identities=16% Similarity=0.029 Sum_probs=19.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhHHHhHhhhC
Q 037795 196 EIAASKSKVDVGNENIQNAQLDFESVAVCLG 226 (227)
Q Consensus 196 ei~~Lks~~~~~~e~~~~ae~eF~svaaa~~ 226 (227)
+...++.+...+++....++.++...+..++
T Consensus 79 ~~~~l~~~i~~le~~~~~~~~~~~~~l~~iP 109 (485)
T 3qne_A 79 EKEKLSNEKKEIIEKEAEADKNLRSKINQVG 109 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666666667777777776665543
No 35
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=68.52 E-value=47 Score=27.15 Aligned_cols=75 Identities=16% Similarity=0.284 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh--h-hhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 147 LQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK--N-ESEIAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 147 ~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~--~-d~ei~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
+.++++.+...+..++..-.+.-+.-+..+..|..|..++-.+... - ...+..|+..++.++..+...+..+..+
T Consensus 47 LEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i 124 (155)
T 2efr_A 47 LEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAI 124 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444444555544443332111 1 4444555555555555555555554443
No 36
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=68.25 E-value=29 Score=33.08 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=15.2
Q ss_pred HhhhhhHHHHHHHHHHHHHhHHHhHhhh
Q 037795 198 AASKSKVDVGNENIQNAQLDFESVAVCL 225 (227)
Q Consensus 198 ~~Lks~~~~~~e~~~~ae~eF~svaaa~ 225 (227)
..++.++..+++....++.+++..+..+
T Consensus 126 ~~l~~~i~~l~~~~~~~~~~l~~~l~~i 153 (501)
T 1wle_A 126 REIRKQLTLLYPKEAQLEEQFYLRALRL 153 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455555555555566666555544
No 37
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=67.87 E-value=25 Score=26.20 Aligned_cols=53 Identities=23% Similarity=0.323 Sum_probs=39.0
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 037795 134 LSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESK 186 (227)
Q Consensus 134 L~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~ 186 (227)
+-++-.||.+-+.+.+++..+++++..-..+.+.+...+...|-.|.-|+.++
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33455566677777777777788877777888888888888888777777654
No 38
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.43 E-value=30 Score=26.85 Aligned_cols=7 Identities=29% Similarity=0.050 Sum_probs=0.0
Q ss_pred hHHHHHH
Q 037795 109 IFNGMFE 115 (227)
Q Consensus 109 ~fe~~~~ 115 (227)
+|..++.
T Consensus 14 ~y~~K~e 20 (131)
T 3tnu_A 14 WFFTKTE 20 (131)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 4444433
No 39
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=66.69 E-value=38 Score=25.33 Aligned_cols=59 Identities=8% Similarity=0.159 Sum_probs=36.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhhh---hhHHHhhhhhHHHHHHHHHHHHHhHHHhH
Q 037795 164 EQSKITVELDHVVKEIKMLEESKAKLTSKN---ESEIAASKSKVDVGNENIQNAQLDFESVA 222 (227)
Q Consensus 164 e~skle~~l~e~er~I~eLe~~~~~~~~~~---d~ei~~Lks~~~~~~e~~~~ae~eF~sva 222 (227)
++..++.+-..++..|..++.+...+.... |.+-+..+...-..+...++++.+|.-..
T Consensus 26 eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~ 87 (96)
T 3q8t_A 26 ELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQ 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555666666655554433 77777777777777777777777776543
No 40
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=66.34 E-value=37 Score=25.47 Aligned_cols=29 Identities=0% Similarity=-0.065 Sum_probs=12.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhHHHHHHH
Q 037795 151 LLEYECHILEQTSEQSKITVELDHVVKEI 179 (227)
Q Consensus 151 ~k~le~~i~e~~~e~skle~~l~e~er~I 179 (227)
|...+++|..+..+.-......+..+..+
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~ 32 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADK 32 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554444444444433333333333
No 41
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=65.62 E-value=16 Score=26.64 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=4.9
Q ss_pred hHHHHHHHHHHHH
Q 037795 172 LDHVVKEIKMLEE 184 (227)
Q Consensus 172 l~e~er~I~eLe~ 184 (227)
|++.|..|.+|+.
T Consensus 49 L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 49 LDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 42
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=62.72 E-value=86 Score=29.37 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=12.1
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 037795 167 KITVELDHVVKEIKMLEESK 186 (227)
Q Consensus 167 kle~~l~e~er~I~eLe~~~ 186 (227)
.+.+...+++++|.-|++..
T Consensus 110 ~~~e~s~eLe~~i~~lk~~V 129 (390)
T 1deq_A 110 TFKQINEDLRSRIEILRRKV 129 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555566677777666643
No 43
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=62.42 E-value=26 Score=27.51 Aligned_cols=22 Identities=18% Similarity=0.520 Sum_probs=14.5
Q ss_pred HHHHHHHHhCCCchhhhHHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL~ 135 (227)
+..+..|...||.+..++.-|.
T Consensus 63 l~~I~~lr~~G~sL~eIk~~l~ 84 (148)
T 3gpv_A 63 LEMILCLKNTGMPIQKIKQFID 84 (148)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 3445666778888877665554
No 44
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.29 E-value=29 Score=26.83 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=9.6
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 160 EQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 160 e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
.++.+...++.....++..|.+.++
T Consensus 47 ~L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 47 RLRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333333333444444443
No 45
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=61.97 E-value=45 Score=26.27 Aligned_cols=89 Identities=15% Similarity=0.212 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHhHHhHHHHHHHHH-----HHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhh
Q 037795 129 TVHSCLSEMQSIKEKHEQLQEQLL-----EYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSK 203 (227)
Q Consensus 129 ~l~sRL~kLL~lK~~~~~~~~~~k-----~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~ 203 (227)
.++..|++|-++-.++.++..... ++..--.++...+..++..|+++++.|.-.+.--++-. =-..||.+=+.=
T Consensus 35 EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~-l~~~Ei~~Rr~f 113 (130)
T 4dnd_A 35 EVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFK-LPAGDLQERKVF 113 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcC-CCHHHHHHHHHH
Confidence 456666666666666655433222 22222223334444555555555555443221100000 016778888888
Q ss_pred HHHHHHHHHHHHHhH
Q 037795 204 VDVGNENIQNAQLDF 218 (227)
Q Consensus 204 ~~~~~e~~~~ae~eF 218 (227)
+..+...+.+++.+.
T Consensus 114 V~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 114 VERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 888998888888764
No 46
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=61.72 E-value=35 Score=24.73 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhh---------hhHHHhhhhhHHHHHHHHHHHHHhHH
Q 037795 171 ELDHVVKEIKMLEESKAKLTSKN---------ESEIAASKSKVDVGNENIQNAQLDFE 219 (227)
Q Consensus 171 ~l~e~er~I~eLe~~~~~~~~~~---------d~ei~~Lks~~~~~~e~~~~ae~eF~ 219 (227)
+++.++..|..|+.+++.+...+ ...+..+......+++.+..+..+..
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443332 34566777777777777776666554
No 47
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=61.68 E-value=67 Score=29.69 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=24.5
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHHHhHhhh
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFESVAVCL 225 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa~ 225 (227)
.+++.+++..+..+.+.+..++.++...+.++
T Consensus 184 ~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~ 215 (486)
T 3haj_A 184 PEQLKKLQDKIEKCKQDVLKTKEKYEKSLKEL 215 (486)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888887765543
No 48
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=61.12 E-value=37 Score=23.30 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=31.9
Q ss_pred HHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 138 QSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 138 L~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
+.-..++.+..+....|+.++...+.+...|...+..+...+..|..
T Consensus 12 ~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 12 MAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777877777777777777776666666655554
No 49
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=60.78 E-value=26 Score=25.71 Aligned_cols=53 Identities=11% Similarity=0.079 Sum_probs=27.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 168 ITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 168 le~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
+++.+..++..+.-||-.++++-.+-.+--.+||..+..++........++-+
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~~~~s 57 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLIDTEFS 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchh
Confidence 34444555555555555555555544444455555555555555544444433
No 50
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=59.78 E-value=43 Score=31.31 Aligned_cols=32 Identities=3% Similarity=0.006 Sum_probs=19.7
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHhHHHhHhhhC
Q 037795 195 SEIAASKSKVDVGNENIQNAQLDFESVAVCLG 226 (227)
Q Consensus 195 ~ei~~Lks~~~~~~e~~~~ae~eF~svaaa~~ 226 (227)
++...++.++..+++....++.+++..+..++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 107 (455)
T 2dq0_A 76 AKSREIVKRIGELENEVEELKKKIDYYLWRLP 107 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455566666666666667777766665553
No 51
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=59.49 E-value=18 Score=30.81 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 037795 147 LQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN 193 (227)
Q Consensus 147 ~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~ 193 (227)
.++++...+.-|.....|+..+-+.++..+..|..|+++++.++...
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566667777889999999999999999999999999988887654
No 52
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=59.04 E-value=45 Score=23.65 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCCchhhhHHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL~ 135 (227)
+..+..|...||....++.-|.
T Consensus 6 L~~I~~lr~lGfsL~eIk~~l~ 27 (99)
T 1q08_A 6 LKFIRHARQLGFSLESIRELLS 27 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHH
Confidence 4556778888999887766553
No 53
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=58.21 E-value=45 Score=23.85 Aligned_cols=11 Identities=18% Similarity=0.181 Sum_probs=3.9
Q ss_pred HHhhhhhHHHH
Q 037795 197 IAASKSKVDVG 207 (227)
Q Consensus 197 i~~Lks~~~~~ 207 (227)
|..|+.....+
T Consensus 43 v~~L~kKiq~l 53 (81)
T 1ic2_A 43 LVALQKKLKGT 53 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 54
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=56.47 E-value=7.4 Score=35.30 Aligned_cols=45 Identities=24% Similarity=0.350 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 037795 147 LQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS 191 (227)
Q Consensus 147 ~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~ 191 (227)
+++++-.++.+|...+.....+...++.++.+|.+|++++..+..
T Consensus 2 ~~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~ 46 (319)
T 1fzc_C 2 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 46 (319)
T ss_dssp --------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888888888888888999988887666544
No 55
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.42 E-value=35 Score=39.67 Aligned_cols=16 Identities=6% Similarity=0.081 Sum_probs=8.2
Q ss_pred chhhhhHHHHHHHHHHH
Q 037795 76 KDMYLEGLVTGYMLTFA 92 (227)
Q Consensus 76 ~e~~REg~A~Glm~tF~ 92 (227)
.++.|+.++- +|+.+-
T Consensus 1857 ~~~~~~~~~~-~~~~iH 1872 (3245)
T 3vkg_A 1857 PPSHRDAVVS-SLVYIH 1872 (3245)
T ss_dssp SCCHHHHHHH-HHHHHH
T ss_pred chhHHHHHHH-HHHHHH
Confidence 4566776543 333333
No 56
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=56.35 E-value=73 Score=28.02 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=23.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHH
Q 037795 165 QSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNA 214 (227)
Q Consensus 165 ~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~a 214 (227)
++=...+|.++|.+|..|+. ++......||.++.+--.++..+..+
T Consensus 172 K~ma~sEI~EID~KI~~L~~----mR~~vl~RLA~lEqdEl~LE~eL~~V 217 (242)
T 3uux_B 172 KNSTLSEIRDIEVEVENLRQ----KKEKLLGKIANIEQNQLLLEDNLKQI 217 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34445567777777777665 33333444444444444444444333
No 57
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=55.30 E-value=83 Score=25.57 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=16.2
Q ss_pred hcccCCCCCCCccccCCchhhhhHHHH
Q 037795 59 VFQKMPQKPHFNLLDGSKDMYLEGLVT 85 (227)
Q Consensus 59 VFk~vPQ~PHF~pL~~~~e~~REg~A~ 85 (227)
+|+..|++| |.||.++.+.+.++..+
T Consensus 7 ~~~lf~~s~-f~~l~~~a~~~~~~a~~ 32 (227)
T 2olt_A 7 ILGVFAKSP-IKPLQEHMDKVYDCASL 32 (227)
T ss_dssp -------CT-THHHHHHHHHHHHHHHT
T ss_pred HHHHhccCh-HHHHHHHHHHHHHHHHH
Confidence 345558999 99999999888887653
No 58
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=54.57 E-value=71 Score=24.51 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhhhhH
Q 037795 175 VVKEIKMLEESKAKLTSKNESEIAASKSKV 204 (227)
Q Consensus 175 ~er~I~eLe~~~~~~~~~~d~ei~~Lks~~ 204 (227)
+|.+|.-|++++.-++..-+.||..|++.+
T Consensus 88 LE~~iesL~eEl~FLKk~heeEl~eLq~qi 117 (119)
T 3ol1_A 88 LERKVESLQEEIAFLKKLHEEEIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555567777776543
No 59
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=53.05 E-value=77 Score=24.46 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=12.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 197 IAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 197 i~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
+..|...-..+++.|.+.+.+.+..
T Consensus 99 ~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 99 NAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555554443
No 60
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=52.81 E-value=5 Score=31.26 Aligned_cols=46 Identities=20% Similarity=0.036 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhH
Q 037795 128 KTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELD 173 (227)
Q Consensus 128 ~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~ 173 (227)
+..+.|+..=..-+++|.+.+++...|+..+.....+..++..+..
T Consensus 37 K~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~ 82 (107)
T 3a5t_A 37 KQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENA 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTS
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555556666666666665555555555555544433
No 61
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=52.34 E-value=58 Score=23.51 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhh
Q 037795 150 QLLEYECHILEQTSEQSKITVE 171 (227)
Q Consensus 150 ~~k~le~~i~e~~~e~skle~~ 171 (227)
+++.++..|...+.++.++...
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e 48 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEE 48 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 62
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=52.27 E-value=29 Score=28.79 Aligned_cols=22 Identities=9% Similarity=0.222 Sum_probs=15.4
Q ss_pred HHHHHHHHhCCCchhhhHHHHH
Q 037795 114 FEALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 114 ~~tl~~LE~~GFdV~~l~sRL~ 135 (227)
+..+..|...||.+..++.-|.
T Consensus 53 l~~i~~l~~~g~~l~~i~~~~~ 74 (278)
T 1r8e_A 53 LDLIKSLKYIGTPLEEMKKAQD 74 (278)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHHHCCCCHHHHHHHHH
Confidence 4456677788999887766553
No 63
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=51.90 E-value=35 Score=27.87 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhh
Q 037795 178 EIKMLEESKAKLTSKNESEIAASK 201 (227)
Q Consensus 178 ~I~eLe~~~~~~~~~~d~ei~~Lk 201 (227)
+|.++++++.+....++.+|.+++
T Consensus 24 ~ia~l~r~~~~i~~~~n~eI~~ik 47 (171)
T 2p2u_A 24 EIATIDRKVGEIEAQMNEAIDAAK 47 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333333
No 64
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=50.23 E-value=40 Score=23.23 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 144 HEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 144 ~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
+.+...+...++.++.+.+.+...|+..+..++..+..|.+
T Consensus 18 R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 18 RQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666777777666666666655544
No 65
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=49.63 E-value=66 Score=23.36 Aligned_cols=33 Identities=9% Similarity=0.146 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 149 EQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 149 ~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
.+++.+...|...+.++.++..+ +++.+.+.+.
T Consensus 28 ~~l~~~q~~i~~lE~el~~~r~e---~~~ql~EYq~ 60 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEMRAR---MQQQLDEYQE 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 34455555555555555555444 4444444433
No 66
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=49.62 E-value=18 Score=26.70 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=13.3
Q ss_pred HHHHHHhCCCchhhhHHHHH
Q 037795 116 ALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 116 tl~~LE~~GFdV~~l~sRL~ 135 (227)
.+..|...||....++..|.
T Consensus 51 ~I~~l~~~G~~l~~I~~~l~ 70 (109)
T 1r8d_A 51 QILFFKEIGFRLDEIKEMLD 70 (109)
T ss_dssp HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHh
Confidence 34456777888777766654
No 67
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=49.09 E-value=77 Score=24.63 Aligned_cols=52 Identities=8% Similarity=0.091 Sum_probs=21.8
Q ss_pred HHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHH
Q 037795 154 YECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNE 209 (227)
Q Consensus 154 le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e 209 (227)
|+..+.........+...+.++|.+=+.|+++ .....+.+.-+++..+.+-+
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~----~R~t~~SLeD~E~k~n~aiE 91 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERA----KRATIVSLEDFEQRLNQAIE 91 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH----HHHHHhhHHHHHHHHHHHHH
Confidence 44444444444444444444444444444442 11224444444444444433
No 68
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=48.65 E-value=77 Score=26.18 Aligned_cols=25 Identities=8% Similarity=0.239 Sum_probs=10.8
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHhHH
Q 037795 195 SEIAASKSKVDVGNENIQNAQLDFE 219 (227)
Q Consensus 195 ~ei~~Lks~~~~~~e~~~~ae~eF~ 219 (227)
+.|.++-.++..+..++...+.+|+
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 69
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=48.53 E-value=1.2e+02 Score=28.88 Aligned_cols=12 Identities=8% Similarity=0.169 Sum_probs=5.0
Q ss_pred HHHhhhhhHHHH
Q 037795 196 EIAASKSKVDVG 207 (227)
Q Consensus 196 ei~~Lks~~~~~ 207 (227)
.|..|+..+...
T Consensus 183 ki~~l~~~~~~~ 194 (464)
T 1m1j_B 183 KIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 70
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=48.09 E-value=51 Score=28.58 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhh
Q 037795 149 EQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSK 203 (227)
Q Consensus 149 ~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~ 203 (227)
...+.++++....+..+++..++++.+-.++.+-.|++|.+++.-|+-+..-++.
T Consensus 171 ~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (228)
T 3q0x_A 171 FRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEVQAQ 225 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecc
Confidence 3445555666677788888888889999999999999999888877766555443
No 71
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=47.82 E-value=1.1e+02 Score=29.40 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=15.0
Q ss_pred hhHHHhhhhhHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQ 212 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~ 212 (227)
-++|-+|++++.+--++|+
T Consensus 145 ~skIQRLE~dI~~q~~~Cr 163 (491)
T 1m1j_A 145 VVEMKRLEVDIDIKIRACK 163 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6778888888887777775
No 72
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=47.50 E-value=1.6e+02 Score=27.05 Aligned_cols=35 Identities=14% Similarity=0.360 Sum_probs=22.3
Q ss_pred HHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037795 118 LNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECH 157 (227)
Q Consensus 118 ~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~ 157 (227)
..|..-|+++ . +.+++.+-..+..++.+...++.+
T Consensus 16 ~~~~~r~~~~----~-~~~~~~~~~~~r~~~~~~~~l~~~ 50 (421)
T 1ses_A 16 RAIREKGVAL----D-LEALLALDREVQELKKRLQEVQTE 50 (421)
T ss_dssp HHHHHHTCCC----C-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCc----C-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456668875 2 667777766666666666666555
No 73
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=47.32 E-value=1.5e+02 Score=26.19 Aligned_cols=28 Identities=7% Similarity=0.169 Sum_probs=17.1
Q ss_pred CCCCCC-CccccCCchhhhhHHHHHHHHHHHHHHHHHh
Q 037795 63 MPQKPH-FNLLDGSKDMYLEGLVTGYMLTFANVVEQTS 99 (227)
Q Consensus 63 vPQ~PH-F~pL~~~~e~~REg~A~Glm~tF~~l~e~v~ 99 (227)
-|=.|| ++.+. .|++|++-++.+.+.+.
T Consensus 93 a~g~pHsWp~~L---------g~L~WLvel~~~~~~~~ 121 (315)
T 2ve7_A 93 TVGAPHTWPHIV---------AALVWLIDCIKIHTAMK 121 (315)
T ss_dssp TTTSTTTHHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHH---------HHHHHHHHHHHHHHHhh
Confidence 466677 44433 37778877776665553
No 74
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=47.27 E-value=84 Score=23.25 Aligned_cols=19 Identities=0% Similarity=-0.087 Sum_probs=7.5
Q ss_pred HHHHHHhhhhhhhhhhhhh
Q 037795 153 EYECHILEQTSEQSKITVE 171 (227)
Q Consensus 153 ~le~~i~e~~~e~skle~~ 171 (227)
..+++|..+..+.-.....
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ 24 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDR 24 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333333
No 75
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.25 E-value=1.5e+02 Score=29.00 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHH
Q 037795 173 DHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQL 216 (227)
Q Consensus 173 ~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~ 216 (227)
++++++|.-|++++.. +. ..|..||+-++..-..|+-.|-
T Consensus 113 ~ELRRrIqyLKekVdn---Ql-snIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIE---KV-QHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666654222 22 5566666666666666664443
No 76
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=46.91 E-value=1.3e+02 Score=25.19 Aligned_cols=59 Identities=15% Similarity=-0.034 Sum_probs=31.6
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 037795 132 SCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK 192 (227)
Q Consensus 132 sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~ 192 (227)
=+|..++.+|.++..= .=+-+..++..++.|+.++....++-++.-...+.+...++..
T Consensus 5 yple~~~~~k~~r~e~--aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~ 63 (169)
T 3k29_A 5 YPLEPVLSIKKDRVDR--AEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQ 63 (169)
T ss_dssp CTTHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889998887643 3333444445555555555544444444444444444444443
No 77
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=46.31 E-value=46 Score=25.33 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=21.1
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHHHhHhhh
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFESVAVCL 225 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa~ 225 (227)
.-.+.+|..+.+..++.+...+..|..++.-|
T Consensus 55 ~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~ 86 (93)
T 3sjb_C 55 NRKLDSLDKEINNLKDEIQSENKAFQAHLHKL 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777888888888888888876544
No 78
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=46.08 E-value=90 Score=23.27 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 037795 129 TVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLT 190 (227)
Q Consensus 129 ~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~ 190 (227)
.++..|+|=|.||.+-.++........ -.+..++.++....++|.+|++++..+.
T Consensus 29 ~ir~eI~KElKiKeGaENL~katt~~k-------k~~~~V~~eL~~sn~kl~~L~~eL~eL~ 83 (86)
T 1cxz_B 29 RLRREIRKELKLKEGAENLRRATTDLG-------RSLGPVELLLRGSSRRLDLLHQQLQELH 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHhHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466667777777777777766555522 2245677778888888888888877654
No 79
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=45.51 E-value=2.1e+02 Score=33.58 Aligned_cols=18 Identities=0% Similarity=0.084 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhccc
Q 037795 85 TGYMLTFANVVEQTSKLQ 102 (227)
Q Consensus 85 ~Glm~tF~~l~e~v~~l~ 102 (227)
-.+.-.++..=.+|..++
T Consensus 1862 ~~~~~~~~~iH~sv~~~s 1879 (3245)
T 3vkg_A 1862 DAVVSSLVYIHQTIGEAN 1879 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444445544443
No 80
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=45.04 E-value=1.6e+02 Score=27.87 Aligned_cols=9 Identities=11% Similarity=-0.031 Sum_probs=5.6
Q ss_pred HHHHhCCCc
Q 037795 118 LNLESHGFD 126 (227)
Q Consensus 118 ~~LE~~GFd 126 (227)
..|..-||+
T Consensus 55 ~~l~~R~~~ 63 (501)
T 1wle_A 55 RALDLRKGE 63 (501)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHcCCC
Confidence 456666775
No 81
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=44.72 E-value=38 Score=24.21 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhhhhh
Q 037795 149 EQLLEYECHILEQTS 163 (227)
Q Consensus 149 ~~~k~le~~i~e~~~ 163 (227)
..++.|+.++.+.+.
T Consensus 29 ~~i~~LE~~v~~le~ 43 (70)
T 1gd2_E 29 DHLKALETQVVTLKE 43 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 82
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=44.61 E-value=87 Score=22.65 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=37.1
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh--hhHHHhhhhhHHHHHHHHHHH
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN--ESEIAASKSKVDVGNENIQNA 214 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~--d~ei~~Lks~~~~~~e~~~~a 214 (227)
++.|+..+..+....+.++.+|...... .+..+..+ -.+++.+++.++ ...|.++.....++++.+.+.
T Consensus 8 I~~Lr~~~d~L~kkq~~L~~~i~~e~~~---Ak~~~~kn------K~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 8 IQRLRDTEEMLSKKQEFLEKKIEQELTA---AKKHGTKN------KRAALQALKRKKRYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHcC------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666666666666666665532222 22221111 124444566665 677777777777766665543
No 83
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=44.12 E-value=96 Score=29.47 Aligned_cols=30 Identities=10% Similarity=0.078 Sum_probs=18.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHHHhHhhhC
Q 037795 197 IAASKSKVDVGNENIQNAQLDFESVAVCLG 226 (227)
Q Consensus 197 i~~Lks~~~~~~e~~~~ae~eF~svaaa~~ 226 (227)
...++.+...+++....++.+++..+..++
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~iP 142 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLNVG 142 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344555666666666666667766665543
No 84
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=43.48 E-value=45 Score=31.76 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=10.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHH
Q 037795 163 SEQSKITVELDHVVKEIKMLEESK 186 (227)
Q Consensus 163 ~e~skle~~l~e~er~I~eLe~~~ 186 (227)
.+...++..+.+++..+.+++.++
T Consensus 78 ~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 78 AEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 85
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A*
Probab=43.39 E-value=1.3e+02 Score=28.81 Aligned_cols=87 Identities=17% Similarity=0.282 Sum_probs=52.7
Q ss_pred chhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhH-HHHHHHHHHHHHHHHHhhhhhhHHHhhhh--
Q 037795 126 DVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELD-HVVKEIKMLEESKAKLTSKNESEIAASKS-- 202 (227)
Q Consensus 126 dV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~-e~er~I~eLe~~~~~~~~~~d~ei~~Lks-- 202 (227)
+..+++.-||+...|...|.+-++.|.-.++++..+ +-+.++ +.=..+.-|+.+.-.++..+|.|+..|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~l~~~~ 79 (473)
T 1uur_A 6 NLSSPQPILDTIYKLLSEQEQTLVQMIHEQSLLLNR------LPPTLDENSLAPLKSLSQKQITLSGQMNTEMSALDATK 79 (473)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999998888886643 122111 12222233555555555555555555542
Q ss_pred --------hHHHHHHHHHHHHHhH
Q 037795 203 --------KVDVGNENIQNAQLDF 218 (227)
Q Consensus 203 --------~~~~~~e~~~~ae~eF 218 (227)
+...+..-|++.+-++
T Consensus 80 ~~~il~p~~l~~l~~l~q~L~~~~ 103 (473)
T 1uur_A 80 KGMILEPTDLAKLFALKQDLQIQF 103 (473)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred hcccCChHHHhHHHHHHHHhHhhh
Confidence 3445666666666555
No 86
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=43.17 E-value=49 Score=24.78 Aligned_cols=25 Identities=16% Similarity=-0.007 Sum_probs=8.9
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHH
Q 037795 132 SCLSEMQSIKEKHEQLQEQLLEYEC 156 (227)
Q Consensus 132 sRL~kLL~lK~~~~~~~~~~k~le~ 156 (227)
+|=|++-.++...+.+...+..++.
T Consensus 9 ~~~~~~~~Lq~~~~~LE~~l~e~E~ 33 (95)
T 3mov_A 9 SRENLYFQGQKESRACLERIQELED 33 (95)
T ss_dssp ---------CCCCHHHHHHHHHHHH
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566555555555555554
No 87
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=43.09 E-value=6.9 Score=26.75 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=26.5
Q ss_pred HhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 037795 139 SIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEES 185 (227)
Q Consensus 139 ~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~ 185 (227)
++|++-+..+.+-.+++.-+...+.....++..+..+|+.|.-|++.
T Consensus 7 qlknrvayklkenaklenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 7 QLKNRVAYKLKENAKLENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 34444444444555566666666666666776666677777666663
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.75 E-value=1.3e+02 Score=27.05 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=24.3
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHHHhHhhhC
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFESVAVCLG 226 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa~~ 226 (227)
.++|-.+......+.+-.+||..+=+..|+-+|
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (487)
T 3oja_A 455 KKLNGEADLALASANATLQELVVREQNLASQLG 487 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhhhHhcccHHHHHHHHHHHHHHhcC
Confidence 677777777777777777777777776666665
No 89
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=42.61 E-value=1.3e+02 Score=24.08 Aligned_cols=47 Identities=11% Similarity=0.280 Sum_probs=22.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhh---hhHHHhhhhhHHHHHHHHHHHH
Q 037795 169 TVELDHVVKEIKMLEESKAKLTSKN---ESEIAASKSKVDVGNENIQNAQ 215 (227)
Q Consensus 169 e~~l~e~er~I~eLe~~~~~~~~~~---d~ei~~Lks~~~~~~e~~~~ae 215 (227)
+...++..|++.-++..+.+..+.- .+.|..|+.+...+...+..++
T Consensus 72 drKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 72 DRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3334444444444444444433321 4555555555555555555443
No 90
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=42.14 E-value=73 Score=23.01 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 149 EQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 149 ~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
+.+..|+.++.-.+.-...|-..+-.-.+.|..|++++..+
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544444444444444444444444444444444
No 91
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=41.77 E-value=1.5e+02 Score=24.68 Aligned_cols=27 Identities=7% Similarity=-0.088 Sum_probs=24.4
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
+.=..+|+..+...++.|.++...|..
T Consensus 127 ~~L~~~L~~a~~e~eeeS~~l~~~F~~ 153 (192)
T 2p22_C 127 IALKKKLEQNTKKLDEESSQLETTTRS 153 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 677889999999999999999999965
No 92
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.73 E-value=1e+02 Score=22.74 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=10.7
Q ss_pred hhHHHhhhhhHHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQN 213 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ 213 (227)
+.++.+|+.+-...++.+..
T Consensus 54 ~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 54 ERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544
No 93
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=41.38 E-value=1.2e+02 Score=27.90 Aligned_cols=31 Identities=10% Similarity=0.288 Sum_probs=18.9
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHhHHHhHhhh
Q 037795 195 SEIAASKSKVDVGNENIQNAQLDFESVAVCL 225 (227)
Q Consensus 195 ~ei~~Lks~~~~~~e~~~~ae~eF~svaaa~ 225 (227)
++...++.+...+++....++.+++..+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 105 (425)
T 2dq3_A 75 NRVKELKEEIDRLEEELRKVEEELKNTLLWI 105 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555666666666666666666666554
No 94
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=41.38 E-value=1.8e+02 Score=25.34 Aligned_cols=30 Identities=10% Similarity=0.378 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037795 128 KTVHSCLSEMQSIKEKHEQLQEQLLEYECH 157 (227)
Q Consensus 128 ~~l~sRL~kLL~lK~~~~~~~~~~k~le~~ 157 (227)
|.+|.|=..+-.+|+++.++.++.-+++.+
T Consensus 97 K~IR~~E~svqp~R~~R~~l~~~I~kLk~k 126 (234)
T 3plt_A 97 KSIRNIEASVQPSRDRKEKITDEIAHLKYK 126 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 444444455667777788888877777654
No 95
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=40.93 E-value=78 Score=22.98 Aligned_cols=15 Identities=13% Similarity=0.031 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 037795 174 HVVKEIKMLEESKAK 188 (227)
Q Consensus 174 e~er~I~eLe~~~~~ 188 (227)
.....|..++.+++.
T Consensus 32 ~~q~~i~~lE~el~~ 46 (86)
T 1x8y_A 32 TSRRLLAEKEREMAE 46 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444433333
No 96
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=40.60 E-value=44 Score=21.46 Aligned_cols=16 Identities=25% Similarity=0.167 Sum_probs=10.7
Q ss_pred hhhHHHhhhhhHHHHH
Q 037795 193 NESEIAASKSKVDVGN 208 (227)
Q Consensus 193 ~d~ei~~Lks~~~~~~ 208 (227)
+|.+|++||++...+.
T Consensus 19 KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 19 KDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHH
Confidence 4777888877655443
No 97
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=40.49 E-value=1.6e+02 Score=24.47 Aligned_cols=50 Identities=10% Similarity=0.133 Sum_probs=33.3
Q ss_pred HhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795 139 SIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK 188 (227)
Q Consensus 139 ~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~ 188 (227)
.+|..++.+.-....++..+.+...-...++...+.+++.+..|+-++..
T Consensus 31 rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 31 RLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666666666666666777777777777777776665554
No 98
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.14 E-value=1.5e+02 Score=24.18 Aligned_cols=27 Identities=11% Similarity=0.015 Sum_probs=13.4
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
-.+-..++..++.+.+.+.+.+--..+
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~~~l~~ 133 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKDTLLDT 133 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555544433
No 99
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=39.93 E-value=44 Score=31.20 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 037795 146 QLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLT 190 (227)
Q Consensus 146 ~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~ 190 (227)
++++++.+++..+...+.....++..+..++.+|..|++++..+.
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 455566666666777777777777777777777777777665553
No 100
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=39.80 E-value=1.6e+02 Score=24.41 Aligned_cols=26 Identities=4% Similarity=0.266 Sum_probs=13.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 196 EIAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 196 ei~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
++-+++..+....+.+..++.++...
T Consensus 166 ~~eK~~~k~~~~~~~~~~a~~~Y~~~ 191 (301)
T 2efk_A 166 DVEKAKQQAHLRSHMAEESKNEYAAQ 191 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555443
No 101
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=39.17 E-value=81 Score=22.64 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhh
Q 037795 148 QEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAAS 200 (227)
Q Consensus 148 ~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~L 200 (227)
..++..+...|...+.++.++.++ +++.+.|.|+ +--.|..-|.||+.-
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e---~~~ql~EYq~-LlniKl~Le~EIatY 52 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRAR---MQQQLDEYQE-LLDIKLALDMEIHAY 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 345666666666667666666665 5555555544 111122226666653
No 102
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.48 E-value=71 Score=24.45 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHH
Q 037795 150 QLLEYECHILEQTSEQSKITVELDHVV 176 (227)
Q Consensus 150 ~~k~le~~i~e~~~e~skle~~l~e~e 176 (227)
+...+.++|...+.|..+|...++..|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666644433
No 103
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=37.05 E-value=2e+02 Score=24.61 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=12.0
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 195 SEIAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 195 ~ei~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
+++.+++..++.....+..++.++..
T Consensus 183 k~~eK~~~k~~k~~~~~~~a~~~Y~~ 208 (337)
T 2x3v_A 183 EQQKKLVDKVDKCRQDVQKTQEKYEK 208 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 104
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.94 E-value=53 Score=30.68 Aligned_cols=6 Identities=33% Similarity=0.263 Sum_probs=2.7
Q ss_pred HHhCCC
Q 037795 120 LESHGF 125 (227)
Q Consensus 120 LE~~GF 125 (227)
|..-|+
T Consensus 18 ~~~R~~ 23 (455)
T 2dq0_A 18 LIKRGE 23 (455)
T ss_dssp HHHHTC
T ss_pred HHHhCC
Confidence 334455
No 105
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.55 E-value=1.3e+02 Score=24.16 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=11.8
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQNAQL 216 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~ 216 (227)
-.+-..++..++.+.+.+.+.+.
T Consensus 95 r~~~~~~e~r~~~L~~ql~e~e~ 117 (135)
T 2e7s_A 95 RMEKYAIEILNKRLTEQLREKDM 117 (135)
T ss_dssp THHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555443
No 106
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.47 E-value=91 Score=22.62 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=5.8
Q ss_pred hhHHHhhhhhHH
Q 037795 194 ESEIAASKSKVD 205 (227)
Q Consensus 194 d~ei~~Lks~~~ 205 (227)
|++|..|+++.+
T Consensus 53 d~eI~~LqseLD 64 (72)
T 3nmd_A 53 DELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555554443
No 107
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=35.12 E-value=2e+02 Score=24.14 Aligned_cols=20 Identities=0% Similarity=0.062 Sum_probs=10.3
Q ss_pred HHHhhhhhHHHHHHHHHHHH
Q 037795 196 EIAASKSKVDVGNENIQNAQ 215 (227)
Q Consensus 196 ei~~Lks~~~~~~e~~~~ae 215 (227)
.|+.|+.++....+.+....
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~ 108 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLH 108 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555444443
No 108
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=34.83 E-value=1.1e+02 Score=23.61 Aligned_cols=16 Identities=13% Similarity=-0.026 Sum_probs=5.9
Q ss_pred hhhhhhhhhhhhhhHH
Q 037795 159 LEQTSEQSKITVELDH 174 (227)
Q Consensus 159 ~e~~~e~skle~~l~e 174 (227)
.++..+..+++...+.
T Consensus 54 ~eK~re~e~~Kr~~~~ 69 (103)
T 4h22_A 54 EEKNKEFEREKHAHSI 69 (103)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 109
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=34.41 E-value=96 Score=22.36 Aligned_cols=21 Identities=5% Similarity=0.068 Sum_probs=8.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhh
Q 037795 151 LLEYECHILEQTSEQSKITVE 171 (227)
Q Consensus 151 ~k~le~~i~e~~~e~skle~~ 171 (227)
++.++.+|...+.+...|++.
T Consensus 24 le~le~~Ie~LE~~i~~le~~ 44 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQ 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 110
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=34.03 E-value=11 Score=29.26 Aligned_cols=48 Identities=23% Similarity=0.142 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHHhH
Q 037795 171 ELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESVA 222 (227)
Q Consensus 171 ~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~sva 222 (227)
.++++|..+..|+++.. ..-.|..+|+.+.+.+.+.|++...-|.||+
T Consensus 59 ~~~~LE~e~~~L~~e~e----~L~~En~~l~~E~~~lk~k~e~L~~~a~s~~ 106 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVE----KLASENASMKLELDALRSKYEALQNFARTVA 106 (107)
T ss_dssp HHHHHHHHHTTTSSTTT----TTTSTTSHHHHTTTSSSSCC-----------
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556655655555322 2245556666677777777777776666664
No 111
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=34.02 E-value=0.88 Score=41.58 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=34.8
Q ss_pred cccCCCCCCCccccCCchhhhh--HHHHHHHHHHHHHHHHHhcccCC-CchhhHHHHHHHHHHHHhCCCchhhhHHHHHH
Q 037795 60 FQKMPQKPHFNLLDGSKDMYLE--GLVTGYMLTFANVVEQTSKLQVS-DPTSIFNGMFEALLNLESHGFDVKTVHSCLSE 136 (227)
Q Consensus 60 Fk~vPQ~PHF~pL~~~~e~~RE--g~A~Glm~tF~~l~e~v~~l~id-D~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~k 136 (227)
++..|..|||..+.++--.+|. ..-.-+|..+-.+|..|---+-. || -|.+. ..+|+|+.+..++.+
T Consensus 262 ~~~t~~~~~flSiLQhLLli~~d~~~~~~~~~Lid~~v~qivl~~~~~Dp--d~~~~--------~l~~~v~~l~d~l~~ 331 (386)
T 2bnx_A 262 VKDSKAEPHFLSILQHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDP--DFKCR--------HLQIDIERLVDQMID 331 (386)
T ss_dssp HTTSTHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHTCGGGCCC--CTTCS--------CCCCCCTTTC-----
T ss_pred HcCCCchhHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhccCCCCC--Ccccc--------cccchHHHHHHHHhh
Confidence 4557788888776655333332 11234677777777777622211 22 12110 567899988877754
No 112
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=34.01 E-value=2e+02 Score=23.77 Aligned_cols=24 Identities=8% Similarity=-0.199 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhh
Q 037795 147 LQEQLLEYECHILEQTSEQSKITV 170 (227)
Q Consensus 147 ~~~~~k~le~~i~e~~~e~skle~ 170 (227)
+.+...++.+.+.....++.+.+.
T Consensus 121 ~~~~~~k~~k~~~~~~~~l~KaK~ 144 (305)
T 2efl_A 121 NFHDGRKAQQHIETCWKQLESSKR 144 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333
No 113
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=34.01 E-value=2.6e+02 Score=26.20 Aligned_cols=12 Identities=8% Similarity=0.307 Sum_probs=6.2
Q ss_pred hhhHHHHHHHHH
Q 037795 128 KTVHSCLSEMQS 139 (227)
Q Consensus 128 ~~l~sRL~kLL~ 139 (227)
+.+..||++|-.
T Consensus 63 r~~~~rIe~L~~ 74 (390)
T 1deq_A 63 QDFTSRINKLRD 74 (390)
T ss_pred hhHHHHHHHHHH
Confidence 455555555433
No 114
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.84 E-value=78 Score=22.84 Aligned_cols=23 Identities=9% Similarity=-0.064 Sum_probs=12.5
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQNAQL 216 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~ 216 (227)
+.+|.+|+..+..+.+.+.+++.
T Consensus 41 q~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 41 RLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 66677777777666666665553
No 115
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=33.77 E-value=1.5e+02 Score=22.82 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=30.3
Q ss_pred HHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh---hhhhHHHhhhhhHHHHHHHHHHHH
Q 037795 153 EYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS---KNESEIAASKSKVDVGNENIQNAQ 215 (227)
Q Consensus 153 ~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~---~~d~ei~~Lks~~~~~~e~~~~ae 215 (227)
+.......+-.+++.+-=.+|.+--.+.++++.++.+.. .+..++.++|-..+.+...+..++
T Consensus 13 KAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 13 KAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555544455555555555555444322 135555555555555554444443
No 116
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=33.62 E-value=46 Score=19.86 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=15.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHh
Q 037795 168 ITVELDHVVKEIKMLEESKAKLT 190 (227)
Q Consensus 168 le~~l~e~er~I~eLe~~~~~~~ 190 (227)
++.+-|-+|.+|.-|+|+.+.++
T Consensus 5 lefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhc
Confidence 45556677777888887766553
No 117
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=33.52 E-value=1.6e+02 Score=22.46 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=13.4
Q ss_pred HHHHHHHhCCCchhhhHHHHH
Q 037795 115 EALLNLESHGFDVKTVHSCLS 135 (227)
Q Consensus 115 ~tl~~LE~~GFdV~~l~sRL~ 135 (227)
..+..|...||.+..++.-|.
T Consensus 48 ~~I~~lr~~G~sl~eI~~~l~ 68 (135)
T 1q06_A 48 TLLRQARQVGFNLEESGELVN 68 (135)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHH
Confidence 345556777888876665443
No 118
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=33.51 E-value=2.2e+02 Score=26.40 Aligned_cols=8 Identities=38% Similarity=0.501 Sum_probs=3.0
Q ss_pred HHhhhhhH
Q 037795 197 IAASKSKV 204 (227)
Q Consensus 197 i~~Lks~~ 204 (227)
|..|+..+
T Consensus 121 i~~l~~~i 128 (409)
T 1m1j_C 121 ITQLKQKI 128 (409)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 119
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=33.03 E-value=90 Score=22.83 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=29.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhh---hhhHHHhhhhhHHHHHHHHHHHHH
Q 037795 167 KITVELDHVVKEIKMLEESKAKLTSK---NESEIAASKSKVDVGNENIQNAQL 216 (227)
Q Consensus 167 kle~~l~e~er~I~eLe~~~~~~~~~---~d~ei~~Lks~~~~~~e~~~~ae~ 216 (227)
.+..++..+|..|..|++-+...... -.-||.++--+.+-+++.+++.+.
T Consensus 22 ~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 22 ILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 45556666777777777754442211 166777777777777777766553
No 120
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.61 E-value=1.4e+02 Score=21.44 Aligned_cols=26 Identities=8% Similarity=0.113 Sum_probs=16.0
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHH
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFE 219 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~ 219 (227)
+.+|.+|+...+.+++.+.+.+..+.
T Consensus 78 ~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 78 QLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666655544
No 121
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=31.56 E-value=70 Score=28.20 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 037795 148 QEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS 191 (227)
Q Consensus 148 ~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~ 191 (227)
.+..+.++.++...+....+|.+.+.+..++|..|++++.++.+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33456777777788888888888888888888888888877644
No 122
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.51 E-value=72 Score=25.67 Aligned_cols=8 Identities=13% Similarity=0.443 Sum_probs=2.8
Q ss_pred HHHHHHhH
Q 037795 134 LSEMQSIK 141 (227)
Q Consensus 134 L~kLL~lK 141 (227)
+.++=.++
T Consensus 24 ~~~le~l~ 31 (135)
T 2e7s_A 24 IENYNQLK 31 (135)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 123
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=31.10 E-value=1.5e+02 Score=21.29 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=11.5
Q ss_pred HHHhHHhHHHHHHHHHHHHHH
Q 037795 137 MQSIKEKHEQLQEQLLEYECH 157 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~ 157 (227)
+=++|...+.+...+..++..
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~ 23 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEEN 23 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334556666665555555553
No 124
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=30.69 E-value=62 Score=23.69 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=13.2
Q ss_pred HHHHHHHhCCCchhhhHHHH
Q 037795 115 EALLNLESHGFDVKTVHSCL 134 (227)
Q Consensus 115 ~tl~~LE~~GFdV~~l~sRL 134 (227)
..+..|...||.+..++.-|
T Consensus 49 ~~I~~lr~~G~sl~~I~~~l 68 (108)
T 2vz4_A 49 QQILFYRELGFPLDEVAALL 68 (108)
T ss_dssp HHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHH
Confidence 34556677888887766544
No 125
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=30.52 E-value=98 Score=22.26 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=8.3
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 037795 167 KITVELDHVVKEIKMLEES 185 (227)
Q Consensus 167 kle~~l~e~er~I~eLe~~ 185 (227)
.++..++.++..|..|+.+
T Consensus 69 ~L~~~~e~i~~~i~~le~~ 87 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQ 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 126
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.93 E-value=1.4e+02 Score=28.31 Aligned_cols=34 Identities=9% Similarity=-0.076 Sum_probs=14.7
Q ss_pred HHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 037795 119 NLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYEC 156 (227)
Q Consensus 119 ~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~ 156 (227)
.|.+-|+++.. +.+++.+-..|..++-+...+..
T Consensus 25 ~~~~R~~~~~~----~d~~~~ld~~~r~~~~~~~~l~~ 58 (484)
T 3lss_A 25 SQRRRFADPDI----VDAIIEADKKWRRTQFLTEASKK 58 (484)
T ss_dssp HHHHTTCCTTH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCChHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555665421 34444444444444444333333
No 127
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.61 E-value=3.7e+02 Score=25.47 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=12.0
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhH
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDF 218 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF 218 (227)
...|..|+...+.+.+.|++.+...
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445545555555555444433
No 128
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=29.03 E-value=18 Score=34.84 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=12.3
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFESV 221 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~sv 221 (227)
+.|-.+++.++..+.+....++.+...+
T Consensus 432 ~~e~~~~~~~~~~a~~~~~~~~~~l~~~ 459 (575)
T 2i1j_A 432 DSETRRLQEEVEDARRKQDEAAAALLAA 459 (575)
T ss_dssp ----------CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666777777777777777776665544
No 129
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=28.90 E-value=45 Score=27.94 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHH
Q 037795 83 LVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKE 142 (227)
Q Consensus 83 ~A~Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~ 142 (227)
.+..+-++|..+|-+..+-..++.. +.-..||++||+|- .||-+++..|+
T Consensus 26 s~s~f~ll~~elV~q~~~~~~~~~~-------ev~~rLe~mGy~IG---~RLiE~~~~r~ 75 (193)
T 3cue_D 26 NTELFTLTYGSIVAQLCQDYERDFN-------KVNDHLYSMGYNIG---CRLIEDFLART 75 (193)
T ss_dssp EHHHHHHHHHHHHHHHHHHTTTCHH-------HHHHHHHHHHHHHH---HHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHhccccHH-------HHHHHHHHhCHHHH---HHHHHHHHhcc
Confidence 3444778899998876654444321 34688999999997 69999988887
No 130
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=28.75 E-value=1.6e+02 Score=21.87 Aligned_cols=7 Identities=29% Similarity=0.548 Sum_probs=3.0
Q ss_pred hHHHHHH
Q 037795 130 VHSCLSE 136 (227)
Q Consensus 130 l~sRL~k 136 (227)
+||.|..
T Consensus 15 LQSALea 21 (81)
T 1wt6_A 15 LQEALEE 21 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 131
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=28.53 E-value=1.1e+02 Score=22.75 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=22.7
Q ss_pred hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 037795 140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184 (227)
Q Consensus 140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~ 184 (227)
|+.+...+.++...++.++.+.++++.....+ ....++|..|.+
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~-~~~~~hI~~Lh~ 49 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALAKLKNRDAK-QTVQKHIDLLHT 49 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH-HHHHHHHHHHHH
Confidence 34444445555555555555555555433211 235667776665
No 132
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=28.42 E-value=2.7e+02 Score=23.48 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=17.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHH
Q 037795 165 QSKITVELDHVVKEIKMLEESKA 187 (227)
Q Consensus 165 ~skle~~l~e~er~I~eLe~~~~ 187 (227)
..|+=..|.++-.||-+|++++.
T Consensus 177 ~~KF~~lLNeKK~KIR~lq~~Ll 199 (213)
T 1ik9_A 177 YKRFILVLNEKKTKIRSLHNKLL 199 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 45777788888888888886553
No 133
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.06 E-value=93 Score=28.61 Aligned_cols=33 Identities=9% Similarity=0.271 Sum_probs=14.8
Q ss_pred HHHhCCCc-hhhhHHHHHHHHHhHHhHHHHHHHHHHHH
Q 037795 119 NLESHGFD-VKTVHSCLSEMQSIKEKHEQLQEQLLEYE 155 (227)
Q Consensus 119 ~LE~~GFd-V~~l~sRL~kLL~lK~~~~~~~~~~k~le 155 (227)
.|..-|++ +. -+.+++.+-..+..++.+...++
T Consensus 17 ~~~~r~~~~~~----~~~~~~~~~~~~r~~~~~~~~l~ 50 (425)
T 2dq3_A 17 RLATRDKELVS----LVDKVLELDKRRREIIKRLEALR 50 (425)
T ss_dssp HHTTTCGGGHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCchh----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556776 22 13444444444444443333333
No 134
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=27.55 E-value=1.1e+02 Score=28.00 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHH-HHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHHhHhhhC
Q 037795 148 QEQLLEYECHILEQTSEQSKITVELDHVVKEIKM-LEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESVAVCLG 226 (227)
Q Consensus 148 ~~~~k~le~~i~e~~~e~skle~~l~e~er~I~e-Le~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa~~ 226 (227)
.++...++++-.....+...+.++...+-+.|.+ -.+.. +..-++...++.++..+++....++.+++..+..++
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 102 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEK----EALIARGKALGEEAKRLEEALREKEARLEALLLQVP 102 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3555555555555555555555555555555443 00000 011234455566666667777777777777666553
No 135
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.52 E-value=2.5e+02 Score=22.93 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=16.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 037795 152 LEYECHILEQTSEQSKITVELDHVVKEIKMLEESK 186 (227)
Q Consensus 152 k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~ 186 (227)
..++..+..++.....+++++.+..+.+.-++-+.
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl 105 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAAL 105 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555443
No 136
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=27.17 E-value=2.3e+02 Score=22.26 Aligned_cols=11 Identities=0% Similarity=0.232 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 037795 175 VVKEIKMLEES 185 (227)
Q Consensus 175 ~er~I~eLe~~ 185 (227)
.|++|.++.++
T Consensus 66 ~e~E~ae~k~K 76 (115)
T 3vem_A 66 LERKMAEVQAE 76 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 137
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=27.09 E-value=89 Score=22.39 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=36.3
Q ss_pred HHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Q 037795 95 VEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQS 139 (227)
Q Consensus 95 ~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~ 139 (227)
+++|+.--.| .....+..++.|.+...+--|+..+..|+.+|+.
T Consensus 17 l~~VK~rF~~-~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~ 60 (80)
T 2cr7_A 17 LDQVKIRFGS-DPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFH 60 (80)
T ss_dssp HHHHHHHTSS-CHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGG
T ss_pred HHHHHHHHcc-ChHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Confidence 4455544444 5699999999999999999999999999999876
No 138
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=26.97 E-value=2.3e+02 Score=23.47 Aligned_cols=37 Identities=8% Similarity=0.043 Sum_probs=20.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 037795 165 QSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASK 201 (227)
Q Consensus 165 ~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lk 201 (227)
+....+...++||.|..|+=.+..+...+|.=|..|+
T Consensus 119 L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~ 155 (170)
T 3l4q_C 119 LRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLT 155 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3333444456666666666666666555555555544
No 139
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=26.66 E-value=1.6e+02 Score=20.26 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=23.0
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVE 171 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~ 171 (227)
=.+-+.++.+.++.+..|+.++..++.+++.|..+
T Consensus 18 reAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~e 52 (63)
T 2dgc_A 18 TEAARRSRARKLQRMKQLEDKVEELLSKNYHLENE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777777776666665554
No 140
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=26.35 E-value=2.3e+02 Score=22.01 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=21.9
Q ss_pred hhhhhhHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795 190 TSKNESEIAASKSKVDVGNENIQNAQLDFES 220 (227)
Q Consensus 190 ~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~s 220 (227)
++.--+.++.|...+.+.+..+.++.--|--
T Consensus 40 ~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq 70 (112)
T 1x79_B 40 SEDSSHQISALVLRAQASEILLEELQQGLSQ 70 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334677788888888888887777777743
No 141
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=25.69 E-value=2.7e+02 Score=22.59 Aligned_cols=91 Identities=10% Similarity=0.046 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhHHhHHHHHHH--HHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh-hhHHHhhhhhHHH
Q 037795 130 VHSCLSEMQSIKEKHEQLQEQ--LLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN-ESEIAASKSKVDV 206 (227)
Q Consensus 130 l~sRL~kLL~lK~~~~~~~~~--~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~-d~ei~~Lks~~~~ 206 (227)
+|+-+---|.-|..+.++.+- ...+.+.+.+.+.-.++|++..+++-..|..++.++..+..+. ...|.+ +.
T Consensus 51 iQktvR~~L~rkkhkPRi~g~~kv~~L~~~~~~~~~i~~~Lk~~k~k~~~~v~~~~~~i~~~i~kIK~~~i~~-----~~ 125 (148)
T 3gn4_A 51 MQKTIRMWLCKRRHKPRIDGLVKVGTLKKRLDKFNEVVSALKDGKQEMSKQVKDLEISIDALMAKIKSTMMTR-----EQ 125 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHHHHTTSCCCH-----HH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCH-----HH
Confidence 344444455555555554433 5566666666677777777777778778888877776654442 222222 34
Q ss_pred HHHHHHHHHHhHHHhHhhh
Q 037795 207 GNENIQNAQLDFESVAVCL 225 (227)
Q Consensus 207 ~~e~~~~ae~eF~svaaa~ 225 (227)
|+..+++.-.+....++++
T Consensus 126 Id~~y~~lv~~~~~~l~~l 144 (148)
T 3gn4_A 126 IQKEYDALVKSSAVLLSAL 144 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766655
No 142
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=25.35 E-value=1.2e+02 Score=20.30 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=20.9
Q ss_pred HhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhH
Q 037795 139 SIKEKHEQLQEQLLEYECHILEQTSEQSKITVELD 173 (227)
Q Consensus 139 ~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~ 173 (227)
+-+.++.+.+..+.+|+.++..++.+...|...+.
T Consensus 12 sA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~ 46 (55)
T 1dh3_A 12 AARESRRKKKEYVKSLENRVAVLENQNKTLIEELK 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666667777766666665555555533
No 143
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=23.96 E-value=46 Score=25.36 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=37.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhh-------hh-hhHHHhhhhhHHHHHHHHHHHHHhHHHhHhh
Q 037795 166 SKITVELDHVVKEIKMLEESKAKLTS-------KN-ESEIAASKSKVDVGNENIQNAQLDFESVAVC 224 (227)
Q Consensus 166 skle~~l~e~er~I~eLe~~~~~~~~-------~~-d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa 224 (227)
++.-.+...+-+.+.+|.+++...-. .+ .-.+.+|..+.+..++.+...+..|..++..
T Consensus 26 s~~~~~~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~~~L~s~ks~fd~~l~~ 92 (94)
T 3vlc_E 26 NELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHK 92 (94)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHHHHTTTTHHHHTTCC--
T ss_pred cHhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555666667777776665322 22 4556667777788888888888888876654
No 144
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=23.83 E-value=3.9e+02 Score=23.89 Aligned_cols=7 Identities=14% Similarity=0.363 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 037795 211 IQNAQLD 217 (227)
Q Consensus 211 ~~~ae~e 217 (227)
|++++.+
T Consensus 213 lQ~lEe~ 219 (406)
T 4dyl_A 213 LQDLHEE 219 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 145
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.63 E-value=1.6e+02 Score=26.97 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhh
Q 037795 147 LQEQLLEYECHILEQTSEQSKITVE 171 (227)
Q Consensus 147 ~~~~~k~le~~i~e~~~e~skle~~ 171 (227)
+..+...+++.|.+.+.++..+++.
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~~ 39 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNEI 39 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 146
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=23.54 E-value=97 Score=24.17 Aligned_cols=20 Identities=10% Similarity=0.439 Sum_probs=12.5
Q ss_pred HHHHHHHhCCCchhhhHHHH
Q 037795 115 EALLNLESHGFDVKTVHSCL 134 (227)
Q Consensus 115 ~tl~~LE~~GFdV~~l~sRL 134 (227)
..+..|...||.+..++.-|
T Consensus 52 ~~I~~lr~~G~sl~~I~~~l 71 (146)
T 3hh0_A 52 QQIQSFKHLGFSLGEIQNII 71 (146)
T ss_dssp HHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 34455667788877665443
No 147
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.21 E-value=2.5e+02 Score=21.33 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=11.9
Q ss_pred hhHHHhhhhhHHHHHHHHHHH
Q 037795 194 ESEIAASKSKVDVGNENIQNA 214 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~a 214 (227)
-.+-..++..++.+.+.+.+.
T Consensus 75 r~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 75 RKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 444455556666666666553
No 148
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=23.14 E-value=20 Score=32.60 Aligned_cols=39 Identities=10% Similarity=0.190 Sum_probs=22.3
Q ss_pred cCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhH
Q 037795 102 QVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKH 144 (227)
Q Consensus 102 ~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~ 144 (227)
.++||...|..+++.+..=+ .-.++.|-|.-||.++++.
T Consensus 247 d~~d~~~~~~~l~~~~~~t~----~~~~flSiLQhLLli~~d~ 285 (386)
T 2bnx_A 247 EMDDFGEVFQIILNTVKDSK----AEPHFLSILQHLLLVRNDY 285 (386)
T ss_dssp HCCCHHHHHHHHHHHHTTST----HHHHHHHHHHHHTTSCCCT
T ss_pred CCCCHHHHHHHHHHHHcCCC----chhHHHHHHHHHHhCCCcc
Confidence 34566666666555543311 2345677777777777653
No 149
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=22.92 E-value=4.5e+02 Score=25.59 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=31.7
Q ss_pred HhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHH
Q 037795 158 ILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQ 215 (227)
Q Consensus 158 i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae 215 (227)
++.-+.+..++.++|..-++.+..+++.++.. -.-|-.+++++++++..+.++.
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t----~~~~~~~~~~~~~~n~~~~~~~ 369 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQERQAKA----VQVYNSRKSELDAANKTLADAI 369 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHhhhhHHHHHH
Confidence 34445556677777777777777777644422 3344455555566666655543
No 150
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=22.84 E-value=2.7e+02 Score=21.65 Aligned_cols=13 Identities=0% Similarity=-0.015 Sum_probs=5.3
Q ss_pred hhHHHhhhhhHHH
Q 037795 194 ESEIAASKSKVDV 206 (227)
Q Consensus 194 d~ei~~Lks~~~~ 206 (227)
-.++-+|+..+..
T Consensus 89 ~~eKe~L~~ql~~ 101 (110)
T 2v4h_A 89 VEKKEYLQEQLEQ 101 (110)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHH
Confidence 3444444444333
No 151
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=22.83 E-value=1.4e+02 Score=27.87 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 147 LQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 147 ~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
.+++...++..|..++.....|+..+..++.+|.+|++....+
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l 131 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQL 131 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555554444
No 152
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.62 E-value=1.9e+02 Score=19.73 Aligned_cols=27 Identities=11% Similarity=0.104 Sum_probs=11.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 037795 160 EQTSEQSKITVELDHVVKEIKMLEESK 186 (227)
Q Consensus 160 e~~~e~skle~~l~e~er~I~eLe~~~ 186 (227)
+...+...++..-+++...|..|+.+.
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444433
No 153
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.58 E-value=2e+02 Score=19.96 Aligned_cols=45 Identities=11% Similarity=0.216 Sum_probs=34.3
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHH
Q 037795 131 HSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHV 175 (227)
Q Consensus 131 ~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~ 175 (227)
+|-....-.|||.-..+..+.+.+.+-+++......+++..+..+
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778899988888888888888888777777777765444
No 154
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=22.53 E-value=52 Score=31.60 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=29.4
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
|..-+..|.....+...++.++...+.+..+..+.+.+-+.++.+|++++..+
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~ 375 (575)
T 2i1j_A 323 LQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQL 375 (575)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44455566666667777777777777777777777777777777777665543
No 155
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=22.39 E-value=97 Score=21.00 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=12.5
Q ss_pred HHHHHhhhhhhhhhhhhhhHHHHHHHHHHH
Q 037795 154 YECHILEQTSEQSKITVELDHVVKEIKMLE 183 (227)
Q Consensus 154 le~~i~e~~~e~skle~~l~e~er~I~eLe 183 (227)
++..|...+.++.+++++ +++.+.+.|
T Consensus 5 ~q~~i~~le~el~~~r~e---~~~q~~eYq 31 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENE---VARLKKLVG 31 (59)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 344444445555555444 444444443
No 156
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=22.33 E-value=2.7e+02 Score=32.02 Aligned_cols=31 Identities=10% Similarity=0.037 Sum_probs=27.0
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHhHHHhHhh
Q 037795 194 ESEIAASKSKVDVGNENIQNAQLDFESVAVC 224 (227)
Q Consensus 194 d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa 224 (227)
-.||.+-..+++..+..|..++..++.+|..
T Consensus 2197 a~eI~~kl~~a~~t~~~I~~~R~~YrpvA~r 2227 (2695)
T 4akg_A 2197 AMNIEKKLSESEEFFPQFDNLVEEYSIIGKH 2227 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 6788888889999999999999999998753
No 157
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.29 E-value=2.1e+02 Score=25.82 Aligned_cols=28 Identities=7% Similarity=0.023 Sum_probs=13.0
Q ss_pred HhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 037795 158 ILEQTSEQSKITVELDHVVKEIKMLEES 185 (227)
Q Consensus 158 i~e~~~e~skle~~l~e~er~I~eLe~~ 185 (227)
|..++..+..++..|.+++.+|.+|+..
T Consensus 28 i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444555555555555543
No 158
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=22.11 E-value=1.9e+02 Score=19.54 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=12.1
Q ss_pred HHHhhhhhHHHHHHHHHH
Q 037795 196 EIAASKSKVDVGNENIQN 213 (227)
Q Consensus 196 ei~~Lks~~~~~~e~~~~ 213 (227)
++..-|.++..+++.+++
T Consensus 33 ~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 33 DAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 555666777777777765
No 159
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.90 E-value=2.3e+02 Score=20.51 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=14.5
Q ss_pred HHhHHhHHHHHHHHHHHHHHHhhhh
Q 037795 138 QSIKEKHEQLQEQLLEYECHILEQT 162 (227)
Q Consensus 138 L~lK~~~~~~~~~~k~le~~i~e~~ 162 (227)
-.|+..+..+..+++.+++.+....
T Consensus 20 ~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 20 NEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345566666666666666655544
No 160
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=21.71 E-value=36 Score=28.80 Aligned_cols=54 Identities=19% Similarity=0.138 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHh
Q 037795 79 YLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEK 143 (227)
Q Consensus 79 ~REg~A~Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~ 143 (227)
.+|..+..+-++|..+|-.+.+= .++ .-+.-..||++||+|- .||.+++..|+.
T Consensus 20 ~~eVs~s~f~lly~eiV~~~~~~-~~~-------~~ev~~rLe~mGy~IG---~RLiE~~~~r~~ 73 (200)
T 1sz7_A 20 SKKMSSELFTLTYGALVTQLCKD-YEN-------DEDVNKQLDKMGFNIG---VRLIEDFLARSN 73 (200)
T ss_dssp --CCCSHHHHHHHHHHHHHHHHH-HCS-------HHHHHHHHHHHHHHHH---HHHHHHHHHHSS
T ss_pred cchhcHHHHHHHHHHHHHHHHHh-cCC-------HHHHHHHHHHhCHHHh---HHHHHHHHhccC
Confidence 44555666778888888876541 122 2224588999999997 699999888763
No 161
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=21.61 E-value=1.2e+02 Score=21.53 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=36.3
Q ss_pred HHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Q 037795 95 VEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQS 139 (227)
Q Consensus 95 ~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~ 139 (227)
+++|+.--.| ......+.++.|.....+.-|+..+..|+.+|+.
T Consensus 11 l~~VK~~F~~-~p~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf~ 54 (77)
T 2czy_A 11 LDQVKIRFGS-DPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFH 54 (77)
T ss_dssp HHHHHHHTTT-CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcc-ChHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 4455544444 5699999999999999999999999999999876
No 162
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=20.95 E-value=2.8e+02 Score=21.15 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=4.4
Q ss_pred hhHHHhhhhhH
Q 037795 194 ESEIAASKSKV 204 (227)
Q Consensus 194 d~ei~~Lks~~ 204 (227)
..++..|+.+.
T Consensus 110 e~e~~~Lk~~l 120 (129)
T 2fxo_A 110 EDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 163
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.81 E-value=1.1e+02 Score=28.31 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795 147 LQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL 189 (227)
Q Consensus 147 ~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~ 189 (227)
+...+++++..+.-...+...++.++....+.+..+++++..+
T Consensus 47 l~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 47 IYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444455555555555555555554443
No 164
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=20.81 E-value=4.3e+02 Score=23.15 Aligned_cols=49 Identities=10% Similarity=0.239 Sum_probs=30.3
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 037795 137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKA 187 (227)
Q Consensus 137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~ 187 (227)
||.|+..-+ ..+..+++.+|+.+...+..+...+..+|..=++|+-.+.
T Consensus 167 lL~IRK~ma--~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~ 215 (242)
T 3uux_B 167 FLNIQKNST--LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLK 215 (242)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 555555444 3477777777777777777666666666655555555443
No 165
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=20.63 E-value=1.8e+02 Score=21.10 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHh
Q 037795 170 VELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLD 217 (227)
Q Consensus 170 ~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~e 217 (227)
.+|.++|.+|..|+. ++...-..||.++.+-..++..+..++.+
T Consensus 21 sEI~EID~Ki~nL~~----mR~ivldRlA~lEqdE~~LE~~l~~i~~r 64 (72)
T 2xu6_A 21 SEIRDIEVEVENLRQ----KKEKLLGKIANIEQNQLMLEDNLKQIDDR 64 (72)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
No 166
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.33 E-value=1.2e+02 Score=23.15 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=6.5
Q ss_pred hhhHHHHHHHHHHHHH
Q 037795 201 KSKVDVGNENIQNAQL 216 (227)
Q Consensus 201 ks~~~~~~e~~~~ae~ 216 (227)
+-.+.-++-++.+-..
T Consensus 77 RnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 77 RNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 167
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=20.08 E-value=4.3e+02 Score=22.90 Aligned_cols=43 Identities=14% Similarity=0.027 Sum_probs=17.8
Q ss_pred CCchhhhHHHHHHHHH----hHHhHHHHHHHHHHHHHHHhhhhhhhh
Q 037795 124 GFDVKTVHSCLSEMQS----IKEKHEQLQEQLLEYECHILEQTSEQS 166 (227)
Q Consensus 124 GFdV~~l~sRL~kLL~----lK~~~~~~~~~~k~le~~i~e~~~e~s 166 (227)
|=||..+-.||--|+. +.+.++...+..-.-=|.|.+.+..+.
T Consensus 61 dddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~svq 107 (234)
T 3plt_A 61 DDDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQ 107 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345555555444443 344444433333333333444443333
Done!