Query 037798
Match_columns 687
No_of_seqs 328 out of 1337
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:30:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14215 bHLH-MYC_N: bHLH-MYC 100.0 1.2E-50 2.7E-55 393.9 12.3 158 10-187 1-163 (163)
2 cd00083 HLH Helix-loop-helix d 99.2 4.2E-11 9E-16 97.1 5.4 52 483-534 5-59 (60)
3 smart00353 HLH helix loop heli 99.1 7E-11 1.5E-15 93.8 5.3 49 487-535 1-52 (53)
4 PF00010 HLH: Helix-loop-helix 99.1 8.4E-11 1.8E-15 94.5 5.0 49 483-531 2-55 (55)
5 KOG1318 Helix loop helix trans 98.4 2.6E-07 5.6E-12 101.4 6.6 55 483-537 234-292 (411)
6 KOG1319 bHLHZip transcription 98.1 2.3E-06 5E-11 84.3 4.4 59 483-541 63-128 (229)
7 cd04897 ACT_ACR_3 ACT domain-c 97.9 6.8E-05 1.5E-09 64.7 9.2 68 614-684 3-74 (75)
8 cd04895 ACT_ACR_1 ACT domain-c 97.9 9.9E-05 2.2E-09 63.2 9.6 67 613-682 2-68 (72)
9 cd04927 ACT_ACR-like_2 Second 97.8 0.00015 3.3E-09 62.2 9.4 70 613-685 1-74 (76)
10 KOG4304 Transcriptional repres 97.7 1.7E-05 3.6E-10 83.0 3.0 53 483-535 33-93 (250)
11 KOG3561 Aryl-hydrocarbon recep 97.6 3.9E-05 8.5E-10 90.7 4.7 51 483-533 21-75 (803)
12 cd04896 ACT_ACR-like_3 ACT dom 97.6 0.00038 8.2E-09 60.2 8.9 66 614-683 2-73 (75)
13 cd04900 ACT_UUR-like_1 ACT dom 97.5 0.00095 2.1E-08 56.5 10.0 48 614-661 3-51 (73)
14 KOG2483 Upstream transcription 97.5 0.00023 4.9E-09 73.7 7.1 61 479-539 56-119 (232)
15 KOG0561 bHLH transcription fac 97.4 0.0001 2.2E-09 77.6 3.0 54 485-538 63-118 (373)
16 cd04925 ACT_ACR_2 ACT domain-c 97.3 0.0017 3.7E-08 55.3 9.6 68 614-683 2-73 (74)
17 KOG2588 Predicted DNA-binding 97.3 0.00011 2.3E-09 87.4 2.4 62 480-541 274-336 (953)
18 cd04899 ACT_ACR-UUR-like_2 C-t 97.2 0.0023 5.1E-08 52.8 9.2 49 614-662 2-50 (70)
19 KOG3960 Myogenic helix-loop-he 96.8 0.0019 4.2E-08 66.8 6.0 60 482-541 118-179 (284)
20 cd04926 ACT_ACR_4 C-terminal 96.8 0.01 2.2E-07 50.2 9.6 66 614-683 3-68 (72)
21 PF01842 ACT: ACT domain; Int 96.8 0.015 3.2E-07 46.9 9.8 61 614-682 2-65 (66)
22 KOG4029 Transcription factor H 96.6 0.0018 3.9E-08 66.8 4.3 59 483-541 110-172 (228)
23 PF13740 ACT_6: ACT domain; PD 96.5 0.018 4E-07 49.2 9.1 66 612-683 2-67 (76)
24 PF13291 ACT_4: ACT domain; PD 96.5 0.033 7.1E-07 47.6 10.4 51 612-662 6-58 (80)
25 PLN03217 transcription factor 96.4 0.0053 1.2E-07 53.9 4.7 48 494-541 19-72 (93)
26 cd04873 ACT_UUR-ACR-like ACT d 96.3 0.036 7.8E-07 45.2 9.2 48 614-661 2-49 (70)
27 PRK00194 hypothetical protein; 96.2 0.024 5.3E-07 49.6 8.0 67 612-682 3-69 (90)
28 cd04928 ACT_TyrKc Uncharacteri 96.2 0.047 1E-06 46.5 9.3 64 614-682 3-67 (68)
29 PRK05007 PII uridylyl-transfer 96.0 0.03 6.5E-07 68.5 10.6 71 611-684 807-880 (884)
30 cd04872 ACT_1ZPV ACT domain pr 96.0 0.031 6.8E-07 48.9 7.8 68 613-684 2-69 (88)
31 cd04893 ACT_GcvR_1 ACT domains 95.9 0.066 1.4E-06 45.9 9.5 66 613-684 2-67 (77)
32 cd04869 ACT_GcvR_2 ACT domains 95.8 0.081 1.7E-06 45.0 9.4 64 615-683 2-71 (81)
33 cd04875 ACT_F4HF-DF N-terminal 95.7 0.091 2E-06 44.3 9.1 66 614-683 1-68 (74)
34 PRK01759 glnD PII uridylyl-tra 95.4 0.071 1.5E-06 65.1 10.3 68 612-682 783-853 (854)
35 PRK00275 glnD PII uridylyl-tra 95.2 0.09 1.9E-06 64.6 10.7 80 602-684 802-887 (895)
36 cd04870 ACT_PSP_1 CT domains f 95.2 0.12 2.6E-06 43.8 8.4 65 614-683 1-65 (75)
37 cd04888 ACT_PheB-BS C-terminal 95.1 0.085 1.8E-06 44.0 7.2 64 614-681 2-66 (76)
38 cd04887 ACT_MalLac-Enz ACT_Mal 94.7 0.32 7E-06 40.4 9.5 61 615-680 2-63 (74)
39 cd04886 ACT_ThrD-II-like C-ter 94.4 0.37 8E-06 38.9 9.1 61 615-680 1-66 (73)
40 PRK04374 PII uridylyl-transfer 94.4 0.24 5.2E-06 60.7 11.2 79 602-683 784-867 (869)
41 TIGR01693 UTase_glnD [Protein- 94.3 0.21 4.6E-06 61.0 10.5 68 612-682 779-849 (850)
42 PRK04435 hypothetical protein; 94.1 0.23 5E-06 48.1 8.5 70 608-681 65-135 (147)
43 PRK03381 PII uridylyl-transfer 94.1 0.28 6.1E-06 59.4 11.0 71 611-684 598-668 (774)
44 PRK05092 PII uridylyl-transfer 94.1 0.28 6E-06 60.6 11.0 80 602-684 831-916 (931)
45 PRK03381 PII uridylyl-transfer 93.8 0.37 7.9E-06 58.4 11.2 56 612-670 707-762 (774)
46 cd04877 ACT_TyrR N-terminal AC 93.7 0.42 9.2E-06 40.3 8.2 45 614-661 2-46 (74)
47 TIGR01693 UTase_glnD [Protein- 93.5 0.35 7.6E-06 59.1 10.4 71 611-684 667-742 (850)
48 PRK03059 PII uridylyl-transfer 93.5 0.34 7.3E-06 59.4 10.1 70 611-683 785-855 (856)
49 PRK01759 glnD PII uridylyl-tra 93.1 0.52 1.1E-05 57.8 11.0 71 611-684 676-750 (854)
50 PRK05007 PII uridylyl-transfer 92.8 0.7 1.5E-05 56.9 11.5 71 611-684 700-774 (884)
51 cd04876 ACT_RelA-SpoT ACT dom 92.2 0.7 1.5E-05 35.8 7.1 61 615-680 1-62 (71)
52 COG2844 GlnD UTP:GlnB (protein 91.5 0.59 1.3E-05 56.2 8.4 78 602-683 779-858 (867)
53 PRK00275 glnD PII uridylyl-tra 91.0 0.96 2.1E-05 55.8 9.9 70 611-683 703-778 (895)
54 cd04879 ACT_3PGDH-like ACT_3PG 90.9 0.87 1.9E-05 36.4 6.6 59 615-681 2-62 (71)
55 PRK06027 purU formyltetrahydro 90.9 1.4 3.1E-05 47.3 9.9 68 612-683 6-75 (286)
56 cd04881 ACT_HSDH-Hom ACT_HSDH_ 90.8 1.7 3.7E-05 35.5 8.4 47 614-660 2-50 (79)
57 cd04905 ACT_CM-PDT C-terminal 90.8 2.2 4.8E-05 36.4 9.3 63 614-681 3-66 (80)
58 cd04874 ACT_Af1403 N-terminal 90.6 1.7 3.7E-05 35.0 8.1 60 614-680 2-62 (72)
59 PRK08577 hypothetical protein; 90.5 1.9 4.2E-05 40.9 9.5 66 612-681 56-123 (136)
60 PRK03059 PII uridylyl-transfer 90.2 1.4 3E-05 54.1 10.3 71 611-684 677-751 (856)
61 cd04878 ACT_AHAS N-terminal AC 89.9 1.8 3.9E-05 34.8 7.6 47 614-660 2-50 (72)
62 TIGR00655 PurU formyltetrahydr 89.7 2 4.3E-05 46.1 9.8 63 614-680 2-66 (280)
63 KOG3910 Helix loop helix trans 89.4 0.29 6.3E-06 55.3 3.4 56 481-536 525-584 (632)
64 cd04880 ACT_AAAH-PDT-like ACT 89.3 2.4 5.3E-05 35.6 8.2 63 616-680 3-66 (75)
65 cd02116 ACT ACT domains are co 89.3 2.7 5.9E-05 30.6 7.7 35 615-649 1-35 (60)
66 PRK07334 threonine dehydratase 89.2 2.1 4.5E-05 47.9 10.0 64 612-680 326-394 (403)
67 PRK05092 PII uridylyl-transfer 88.5 2.4 5.2E-05 52.6 10.7 79 602-683 720-805 (931)
68 PRK13011 formyltetrahydrofolat 87.9 3.1 6.7E-05 44.8 9.8 67 612-683 7-75 (286)
69 PF13185 GAF_2: GAF domain; PD 87.8 1.7 3.7E-05 39.5 6.8 54 120-173 67-126 (148)
70 cd04894 ACT_ACR-like_1 ACT dom 87.2 3.3 7.2E-05 35.0 7.3 66 614-681 2-67 (69)
71 cd04903 ACT_LSD C-terminal ACT 87.2 2.6 5.6E-05 33.8 6.8 58 615-680 2-61 (71)
72 cd04908 ACT_Bt0572_1 N-termina 86.6 4.9 0.00011 33.0 8.3 45 614-660 3-47 (66)
73 KOG4447 Transcription factor T 86.5 0.45 9.7E-06 46.4 2.2 50 483-532 79-130 (173)
74 KOG3558 Hypoxia-inducible fact 86.5 0.41 8.8E-06 56.2 2.3 42 488-529 52-97 (768)
75 PRK04374 PII uridylyl-transfer 86.1 3.3 7.2E-05 51.0 9.9 71 611-684 689-761 (869)
76 KOG3559 Transcriptional regula 85.0 0.69 1.5E-05 51.3 3.0 42 488-529 7-52 (598)
77 cd04883 ACT_AcuB C-terminal AC 84.6 9.3 0.0002 31.3 9.1 59 614-680 3-63 (72)
78 KOG3560 Aryl-hydrocarbon recep 84.5 0.68 1.5E-05 53.1 2.8 39 491-529 34-76 (712)
79 PRK11061 fused phosphoenolpyru 84.0 5.8 0.00012 48.2 10.5 63 115-177 67-137 (748)
80 cd04904 ACT_AAAH ACT domain of 83.4 7.1 0.00015 33.2 8.0 63 616-685 4-67 (74)
81 COG4492 PheB ACT domain-contai 83.1 5.3 0.00012 38.5 7.6 67 611-681 71-138 (150)
82 PRK13010 purU formyltetrahydro 82.7 5.4 0.00012 43.1 8.6 69 612-683 9-79 (289)
83 cd04884 ACT_CBS C-terminal ACT 81.6 9.1 0.0002 31.8 7.9 62 615-681 2-66 (72)
84 cd04909 ACT_PDH-BS C-terminal 81.4 8.5 0.00019 31.5 7.6 35 614-648 3-37 (69)
85 cd04889 ACT_PDH-BS-like C-term 79.1 7.4 0.00016 30.6 6.3 44 615-658 1-45 (56)
86 cd04902 ACT_3PGDH-xct C-termin 78.8 5.8 0.00013 32.4 5.8 58 615-680 2-61 (73)
87 cd04901 ACT_3PGDH C-terminal A 77.9 2.3 4.9E-05 34.7 3.0 57 616-680 3-59 (69)
88 PRK10872 relA (p)ppGpp synthet 77.6 12 0.00025 45.6 9.9 50 613-662 667-718 (743)
89 PF13710 ACT_5: ACT domain; PD 77.2 8.8 0.00019 31.9 6.3 57 621-683 1-59 (63)
90 TIGR00691 spoT_relA (p)ppGpp s 76.4 13 0.00028 44.8 9.9 51 612-662 610-661 (683)
91 cd04882 ACT_Bt0572_2 C-termina 76.2 12 0.00025 29.9 6.8 56 615-680 2-59 (65)
92 TIGR00119 acolac_sm acetolacta 76.1 12 0.00026 37.0 8.0 63 614-682 3-67 (157)
93 PRK11092 bifunctional (p)ppGpp 75.9 13 0.00029 44.8 9.9 51 612-662 626-677 (702)
94 cd04931 ACT_PAH ACT domain of 75.4 21 0.00045 32.0 8.6 49 613-661 15-64 (90)
95 TIGR01817 nifA Nif-specific re 74.9 4.2 9.1E-05 47.1 5.2 72 115-186 68-151 (534)
96 KOG3898 Transcription factor N 72.7 2.1 4.5E-05 45.4 1.9 50 483-532 73-125 (254)
97 PRK11589 gcvR glycine cleavage 72.7 8.7 0.00019 39.0 6.3 66 611-682 7-72 (190)
98 PRK11895 ilvH acetolactate syn 72.6 17 0.00036 36.1 8.0 63 614-682 4-68 (161)
99 PRK11152 ilvM acetolactate syn 71.3 24 0.00053 30.7 7.8 62 614-682 5-68 (76)
100 COG3830 ACT domain-containing 71.2 7.7 0.00017 35.0 4.8 67 612-682 3-69 (90)
101 cd04929 ACT_TPH ACT domain of 70.8 32 0.00069 29.6 8.4 60 618-684 6-66 (74)
102 cd04885 ACT_ThrD-I Tandem C-te 67.6 21 0.00045 29.6 6.5 59 616-680 2-61 (68)
103 KOG4395 Transcription factor A 67.0 7.7 0.00017 41.0 4.5 53 483-535 175-230 (285)
104 cd04922 ACT_AKi-HSDH-ThrA_2 AC 65.7 42 0.00092 26.7 7.9 59 614-682 3-64 (66)
105 cd04930 ACT_TH ACT domain of t 64.9 40 0.00088 31.5 8.5 65 614-685 43-108 (115)
106 PRK13562 acetolactate synthase 63.9 21 0.00046 31.8 6.0 64 614-682 4-69 (84)
107 PRK06737 acetolactate synthase 63.2 28 0.0006 30.4 6.5 63 614-682 4-68 (76)
108 cd04892 ACT_AK-like_2 ACT doma 62.7 51 0.0011 25.4 7.7 34 614-647 2-38 (65)
109 PRK11589 gcvR glycine cleavage 61.1 41 0.00089 34.2 8.4 65 613-682 96-166 (190)
110 cd04919 ACT_AK-Hom3_2 ACT doma 61.0 46 0.00099 26.7 7.3 36 621-656 13-48 (66)
111 PF05088 Bac_GDH: Bacterial NA 60.7 35 0.00076 44.8 9.5 73 611-686 488-565 (1528)
112 PF01590 GAF: GAF domain; Int 59.7 28 0.00061 31.7 6.5 105 8-172 4-131 (154)
113 smart00065 GAF Domain present 57.9 1.2E+02 0.0026 25.8 10.0 26 8-33 4-29 (149)
114 CHL00100 ilvH acetohydroxyacid 57.8 39 0.00083 34.0 7.4 64 614-683 4-69 (174)
115 TIGR01127 ilvA_1Cterm threonin 56.1 53 0.0012 36.3 9.0 66 610-680 303-373 (380)
116 cd04916 ACT_AKiii-YclM-BS_2 AC 55.9 80 0.0017 25.1 7.9 59 614-682 3-64 (66)
117 PRK06382 threonine dehydratase 55.7 50 0.0011 37.1 8.8 66 610-680 328-398 (406)
118 PF13492 GAF_3: GAF domain; PD 54.0 59 0.0013 28.5 7.4 37 8-44 4-40 (129)
119 cd04932 ACT_AKiii-LysC-EC_1 AC 52.6 1E+02 0.0022 26.4 8.2 37 619-657 11-47 (75)
120 cd04868 ACT_AK-like ACT domain 52.5 54 0.0012 24.7 6.1 27 622-648 13-39 (60)
121 PRK08198 threonine dehydratase 51.7 69 0.0015 35.8 9.1 65 611-680 326-395 (404)
122 COG0317 SpoT Guanosine polypho 50.7 71 0.0015 38.8 9.3 51 612-662 627-678 (701)
123 cd04906 ACT_ThrD-I_1 First of 50.0 76 0.0016 27.6 7.2 61 612-680 1-64 (85)
124 PRK00227 glnD PII uridylyl-tra 47.7 1.1E+02 0.0023 37.3 10.2 63 617-683 552-614 (693)
125 PRK11899 prephenate dehydratas 47.7 1E+02 0.0023 33.1 9.3 68 613-685 195-263 (279)
126 cd04924 ACT_AK-Arch_2 ACT doma 47.6 1.3E+02 0.0028 23.7 7.9 59 614-682 3-64 (66)
127 PRK08178 acetolactate synthase 44.7 88 0.0019 28.7 6.9 64 612-682 8-73 (96)
128 COG0788 PurU Formyltetrahydrof 44.6 1.1E+02 0.0024 33.0 8.6 68 612-683 7-76 (287)
129 cd04937 ACT_AKi-DapG-BS_2 ACT 43.7 1.1E+02 0.0024 24.9 6.9 21 621-641 13-33 (64)
130 cd04890 ACT_AK-like_1 ACT doma 41.4 78 0.0017 25.2 5.6 36 621-658 12-47 (62)
131 COG2844 GlnD UTP:GlnB (protein 41.1 1.3E+02 0.0027 37.2 9.3 58 603-660 675-733 (867)
132 cd04918 ACT_AK1-AT_2 ACT domai 40.2 84 0.0018 25.7 5.7 52 621-682 12-63 (65)
133 cd04923 ACT_AK-LysC-DapG-like_ 36.4 2E+02 0.0044 22.2 7.3 26 621-646 12-37 (63)
134 PF02120 Flg_hook: Flagellar h 35.7 1.2E+02 0.0025 25.9 6.1 48 601-648 26-79 (85)
135 cd04936 ACT_AKii-LysC-BS-like_ 35.1 2.1E+02 0.0046 22.1 7.3 26 621-646 12-37 (63)
136 cd04935 ACT_AKiii-DAPDC_1 ACT 33.8 1.5E+02 0.0032 25.4 6.3 55 620-680 12-67 (75)
137 cd04913 ACT_AKii-LysC-BS-like_ 33.7 1.9E+02 0.0041 23.0 6.8 28 619-646 9-36 (75)
138 cd04933 ACT_AK1-AT_1 ACT domai 31.5 2.8E+02 0.006 24.1 7.7 43 614-658 3-48 (78)
139 cd04912 ACT_AKiii-LysC-EC-like 31.2 1.9E+02 0.0042 24.3 6.6 43 614-658 3-48 (75)
140 cd04915 ACT_AK-Ectoine_2 ACT d 30.5 1.3E+02 0.0028 24.8 5.4 32 622-653 14-45 (66)
141 cd04921 ACT_AKi-HSDH-ThrA-like 29.9 1.8E+02 0.004 24.2 6.3 36 614-649 3-41 (80)
142 cd04934 ACT_AK-Hom3_1 CT domai 29.5 2.9E+02 0.0062 23.5 7.4 59 614-680 3-65 (73)
143 PF13063 DUF3925: Protein of u 29.0 11 0.00023 31.0 -1.3 52 99-168 7-59 (66)
144 KOG3582 Mlx interactors and re 29.0 14 0.0003 44.0 -1.0 61 481-541 650-715 (856)
145 PRK10622 pheA bifunctional cho 28.9 2.6E+02 0.0056 31.6 9.0 64 617-685 302-366 (386)
146 COG3978 Acetolactate synthase 28.0 2.9E+02 0.0063 24.7 7.1 62 614-682 5-68 (86)
147 cd04920 ACT_AKiii-DAPDC_2 ACT 27.5 2.8E+02 0.0061 22.6 6.8 26 621-646 12-37 (63)
148 PF13840 ACT_7: ACT domain ; P 25.7 1E+02 0.0022 25.5 3.9 32 613-644 7-42 (65)
149 PF02344 Myc-LZ: Myc leucine z 25.6 69 0.0015 23.6 2.4 17 490-506 13-29 (32)
150 PRK08526 threonine dehydratase 25.5 2.8E+02 0.006 31.4 8.5 66 610-680 324-394 (403)
151 PRK11898 prephenate dehydratas 24.6 3.3E+02 0.0071 29.3 8.5 68 613-685 197-266 (283)
152 cd04910 ACT_AK-Ectoine_1 ACT d 24.0 2.6E+02 0.0056 24.1 6.1 52 622-683 14-65 (71)
153 PRK05022 anaerobic nitric oxid 23.5 1E+02 0.0023 35.6 4.8 73 115-188 65-153 (509)
154 KOG4447 Transcription factor T 23.3 65 0.0014 31.9 2.5 43 489-531 29-73 (173)
155 COG0077 PheA Prephenate dehydr 22.2 4.7E+02 0.01 28.4 9.0 66 613-683 195-261 (279)
156 COG3976 Uncharacterized protei 21.6 1.9E+02 0.0042 27.9 5.2 73 600-687 62-135 (135)
157 PRK15429 formate hydrogenlyase 21.0 1.3E+02 0.0028 36.3 5.0 70 116-185 252-335 (686)
No 1
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal
Probab=100.00 E-value=1.2e-50 Score=393.85 Aligned_cols=158 Identities=58% Similarity=1.022 Sum_probs=147.8
Q ss_pred HHHHHHHhhccCCceEEEEeeecCCCceEEecceeecCCcccccccCCCccChHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 037798 10 LQSILQEAVQSVQWTYSLFWQICPQQGILIWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNQPT 89 (687)
Q Consensus 10 Lq~~L~~lv~~~~WtYAiFWq~s~~~~vL~WgDGyy~g~~~~~k~~~~~~~~~~~~~~~r~~~lreL~~sl~~g~~~~~~ 89 (687)
||++||+||++.+|+||||||+++++.+|+||||||+|++++++.. ++.+++|+++||+||.++.
T Consensus 1 Lq~~Lr~lv~~~~W~YaVFWk~~~~~~~L~W~DG~~~g~~~~~~~~-------~~~~~~~~~~l~~l~~~~~-------- 65 (163)
T PF14215_consen 1 LQQRLRSLVENSQWTYAVFWKLSPDNSVLVWGDGYCNGPKETRKNG-------EEEQEQRSKVLRELHSSFS-------- 65 (163)
T ss_pred ChHHHHHHhCCCCCcEEEEeEEcCCCCeeeEcceeecCCcccccch-------hhccchhhhHHHHHhhhcc--------
Confidence 7999999999999999999999998899999999999998877643 2567999999999996554
Q ss_pred CCCCccCCCCCCCccceeeeeeeeeecCCCCCccceecccCCeeEeeCCCCCCCCccccccCCC-----eEEEEeeCCcE
Q 037798 90 RRPSAALSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRAILAK-----TVVCIPFLDGV 164 (687)
Q Consensus 90 ~~~~~als~edltd~Ewfyl~sm~~sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f~R~~lAk-----TvvciP~~~GV 164 (687)
..++.+++|+|+||||++||+|+| |+|+|||||++|+|+||++++.++++.|+|+++|| ||||||+.+||
T Consensus 66 ---~~~~~~~~v~~~e~f~~~s~~~sf--g~G~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv~IPv~~GV 140 (163)
T PF14215_consen 66 ---SYALSPEEVTDTEWFYLVSMSYSF--GEGIPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIVCIPVPNGV 140 (163)
T ss_pred ---ccccccchhHHHHHHhhceeeEEe--cCCccEEEeecCccEEEeCCCccccccchhhhhhcccccceEEEEEecCCE
Confidence 246789999999999999999999 99999999999999999999999999999999998 99999999999
Q ss_pred EEecccccccCCHHHHHHHHHHh
Q 037798 165 VELGTTEKVPEDLALVQHVKSLF 187 (687)
Q Consensus 165 vELGSte~V~Ed~~lv~~ik~~F 187 (687)
||||||++|+||++||++||++|
T Consensus 141 vELGSt~~I~Ed~~~v~~vk~~F 163 (163)
T PF14215_consen 141 VELGSTEKIPEDSNLVQRVKSLF 163 (163)
T ss_pred EEeeeeeeeccCHHHHHHHHhhC
Confidence 99999999999999999999998
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.16 E-value=4.2e-11 Score=97.06 Aligned_cols=52 Identities=44% Similarity=0.747 Sum_probs=49.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhccCCCC---CCCCccchHHHHHHHHHHHHHHH
Q 037798 483 SANHVLAERRRREKLNERFIILRSLVPFV---TKMDKASILGDTIEYVKQLRKKI 534 (687)
Q Consensus 483 ~~~H~~~ER~RR~kin~~f~~LrsLvP~~---~K~dKaSIL~~aI~YIk~Lq~~v 534 (687)
+..|+..||+||++||+.|..|+++||.. .|+||++||..||+||+.|+.++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999976 89999999999999999999876
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.13 E-value=7e-11 Score=93.82 Aligned_cols=49 Identities=51% Similarity=0.697 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHhccCC---CCCCCCccchHHHHHHHHHHHHHHHH
Q 037798 487 VLAERRRREKLNERFIILRSLVP---FVTKMDKASILGDTIEYVKQLRKKIQ 535 (687)
Q Consensus 487 ~~~ER~RR~kin~~f~~LrsLvP---~~~K~dKaSIL~~aI~YIk~Lq~~v~ 535 (687)
+..||+||++||+.|..|+++|| ...|++|++||..||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999 47799999999999999999999876
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.11 E-value=8.4e-11 Score=94.53 Aligned_cols=49 Identities=47% Similarity=0.727 Sum_probs=46.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhccCCCC-----CCCCccchHHHHHHHHHHHH
Q 037798 483 SANHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 531 (687)
Q Consensus 483 ~~~H~~~ER~RR~kin~~f~~LrsLvP~~-----~K~dKaSIL~~aI~YIk~Lq 531 (687)
+..|+..||+||.+||+.|..|+.+||.. .|.+|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 45899999999999999999999999965 78999999999999999997
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.44 E-value=2.6e-07 Score=101.43 Aligned_cols=55 Identities=36% Similarity=0.611 Sum_probs=49.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhccCCCC----CCCCccchHHHHHHHHHHHHHHHHHH
Q 037798 483 SANHVLAERRRREKLNERFIILRSLVPFV----TKMDKASILGDTIEYVKQLRKKIQDL 537 (687)
Q Consensus 483 ~~~H~~~ER~RR~kin~~f~~LrsLvP~~----~K~dKaSIL~~aI~YIk~Lq~~v~~L 537 (687)
+.+|++.|||||++||++|..|..|||.+ .|..|.+||..+.+||++|++..++.
T Consensus 234 rd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 234 RDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999965 46679999999999999999887733
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.12 E-value=2.3e-06 Score=84.27 Aligned_cols=59 Identities=34% Similarity=0.518 Sum_probs=53.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhccCCCC-------CCCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 037798 483 SANHVLAERRRREKLNERFIILRSLVPFV-------TKMDKASILGDTIEYVKQLRKKIQDLESRN 541 (687)
Q Consensus 483 ~~~H~~~ER~RR~kin~~f~~LrsLvP~~-------~K~dKaSIL~~aI~YIk~Lq~~v~~Le~~~ 541 (687)
+..|.-+||+||+.||.-|..|+.|||.+ -|..||-||..+|+||.+|.+.+.+-+.+.
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~ 128 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEV 128 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999943 277899999999999999999988887776
No 7
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.92 E-value=6.8e-05 Score=64.74 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=57.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccC----HHHHHHHHHHHhhc
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKAS----IVEVKRAINQIIPQ 684 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s----~~eIkqAL~~ii~k 684 (687)
+|+|.|+.|+|||.+|..+|.+++++|.++.+++.++...-+|..+-.. |.++. .+.|+++|..++.+
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~---g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKD---GRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCC---CCccCCHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999887654 65554 35667777777654
No 8
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.88 E-value=9.9e-05 Score=63.25 Aligned_cols=67 Identities=22% Similarity=0.295 Sum_probs=54.6
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 613 ALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 613 vlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
.+|+|.++.|+|+|.+|.++|.++||+|++|.+++.++.+.-+|...-.. |.++.-.+-.++|++.+
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~---g~kl~d~~~~~~l~~~L 68 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQL---GNKLTDDSLIAYIEKSL 68 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCC---CCCCCCHHHHHHHHHHh
Confidence 37999999999999999999999999999999999999999999887443 66665444444454443
No 9
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.79 E-value=0.00015 Score=62.23 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=57.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe-eCCEEEEEEEEEEccccCCcc---cCHHHHHHHHHHHhhcc
Q 037798 613 ALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL-TNGVFTAQLRAKVKDNVNGKK---ASIVEVKRAINQIIPQY 685 (687)
Q Consensus 613 vlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~-~dg~l~~tI~aKv~en~~G~~---~s~~eIkqAL~~ii~k~ 685 (687)
++|+|.|+.|+|+|.+|..+|..+||+|++|++++ .+|...-+|...-.. |.. ....+|+++|.+++++.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~---~~~~~~~~~~~l~~~L~~~L~~~ 74 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAR---ELLHTKKRREETYDYLRAVLGDS 74 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCC---CCCCCHHHHHHHHHHHHHHHchh
Confidence 47999999999999999999999999999999996 899998888885332 331 23556888888887653
No 10
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.74 E-value=1.7e-05 Score=83.00 Aligned_cols=53 Identities=32% Similarity=0.506 Sum_probs=47.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhccCC--------CCCCCCccchHHHHHHHHHHHHHHHH
Q 037798 483 SANHVLAERRRREKLNERFIILRSLVP--------FVTKMDKASILGDTIEYVKQLRKKIQ 535 (687)
Q Consensus 483 ~~~H~~~ER~RR~kin~~f~~LrsLvP--------~~~K~dKaSIL~~aI~YIk~Lq~~v~ 535 (687)
..+|-+.|||||.|||+.+..||.||| ..+|++||-||.-|++|++.|++...
T Consensus 33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 567889999999999999999999999 22788999999999999999998644
No 11
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.65 E-value=3.9e-05 Score=90.68 Aligned_cols=51 Identities=25% Similarity=0.435 Sum_probs=47.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhccCCCC----CCCCccchHHHHHHHHHHHHHH
Q 037798 483 SANHVLAERRRREKLNERFIILRSLVPFV----TKMDKASILGDTIEYVKQLRKK 533 (687)
Q Consensus 483 ~~~H~~~ER~RR~kin~~f~~LrsLvP~~----~K~dKaSIL~~aI~YIk~Lq~~ 533 (687)
+.+|..+|||||+|+|..+.+|.+|||.. -|+||.+||..||.+||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 67899999999999999999999999943 6999999999999999999884
No 12
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.60 E-value=0.00038 Score=60.16 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=54.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEE--eeCCEEEEEEEEEEccccCCcccC----HHHHHHHHHHHhh
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSF--LTNGVFTAQLRAKVKDNVNGKKAS----IVEVKRAINQIIP 683 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS--~~dg~l~~tI~aKv~en~~G~~~s----~~eIkqAL~~ii~ 683 (687)
+|+|.|+.|+|+|.+|..+|..+||+|.+|.++ +.+....-.|..... |.++. ...|+++|..++.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~----g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSD----GKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCC----CCccCCHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999 999999888888332 53442 4567777777654
No 13
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.51 E-value=0.00095 Score=56.48 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=43.2
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee-CCEEEEEEEEEEc
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT-NGVFTAQLRAKVK 661 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~-dg~l~~tI~aKv~ 661 (687)
.|+|.|+.|+|+|.+|..+|..+||+|++|.+.+. +|.+.-+|...-.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~ 51 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP 51 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC
Confidence 57899999999999999999999999999999876 7998888887643
No 14
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.48 E-value=0.00023 Score=73.67 Aligned_cols=61 Identities=28% Similarity=0.430 Sum_probs=50.8
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHHHhccCCCC--CCCC-ccchHHHHHHHHHHHHHHHHHHHh
Q 037798 479 QDEMSANHVLAERRRREKLNERFIILRSLVPFV--TKMD-KASILGDTIEYVKQLRKKIQDLES 539 (687)
Q Consensus 479 ~~~~~~~H~~~ER~RR~kin~~f~~LrsLvP~~--~K~d-KaSIL~~aI~YIk~Lq~~v~~Le~ 539 (687)
....+..|+.-||+||..|++.|..|+.+||.. .+.. .++||..|+.||+.|+.+..+...
T Consensus 56 ~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~ 119 (232)
T KOG2483|consen 56 AASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQ 119 (232)
T ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHH
Confidence 445688999999999999999999999999943 3433 699999999999999887655443
No 15
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.39 E-value=0.0001 Score=77.62 Aligned_cols=54 Identities=37% Similarity=0.493 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCC--CCCCCCccchHHHHHHHHHHHHHHHHHHH
Q 037798 485 NHVLAERRRREKLNERFIILRSLVP--FVTKMDKASILGDTIEYVKQLRKKIQDLE 538 (687)
Q Consensus 485 ~H~~~ER~RR~kin~~f~~LrsLvP--~~~K~dKaSIL~~aI~YIk~Lq~~v~~Le 538 (687)
--+.-||||-..||.-|..||+|+| -+.|..||.||..|.+||.+|+...-+|-
T Consensus 63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll 118 (373)
T KOG0561|consen 63 IANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELL 118 (373)
T ss_pred hhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccc
Confidence 3455699999999999999999999 46899999999999999999988765553
No 16
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.34 E-value=0.0017 Score=55.35 Aligned_cols=68 Identities=16% Similarity=0.419 Sum_probs=54.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCccc----CHHHHHHHHHHHhh
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKA----SIVEVKRAINQIIP 683 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~----s~~eIkqAL~~ii~ 683 (687)
+|+|.++.|+|+|.+|..+|..+|+.|+.+++++.++.+..+|...-.. +|... ....|+++|.+++.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~--~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEE--TGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCc--CCCCCCCHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999775321 12212 24567777777653
No 17
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.30 E-value=0.00011 Score=87.37 Aligned_cols=62 Identities=32% Similarity=0.570 Sum_probs=57.5
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHhccCC-CCCCCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 037798 480 DEMSANHVLAERRRREKLNERFIILRSLVP-FVTKMDKASILGDTIEYVKQLRKKIQDLESRN 541 (687)
Q Consensus 480 ~~~~~~H~~~ER~RR~kin~~f~~LrsLvP-~~~K~dKaSIL~~aI~YIk~Lq~~v~~Le~~~ 541 (687)
.+.+++|++.|||.|-.||+++..||.+|| ...|..|.++|..||+||++|+...+.|+.++
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~ 336 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLEN 336 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhh
Confidence 466889999999999999999999999999 56899999999999999999999988888766
No 18
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.24 E-value=0.0023 Score=52.76 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=44.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEcc
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKD 662 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~e 662 (687)
+|.|.|+.++|+|.+|+.+|.+++++|.++++.+.++.+...|.+.-..
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~ 50 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDAD 50 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCC
Confidence 6889999999999999999999999999999998888888888887653
No 19
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=96.83 E-value=0.0019 Score=66.78 Aligned_cols=60 Identities=27% Similarity=0.434 Sum_probs=51.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhccC-CCC-CCCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 037798 482 MSANHVLAERRRREKLNERFIILRSLV-PFV-TKMDKASILGDTIEYVKQLRKKIQDLESRN 541 (687)
Q Consensus 482 ~~~~H~~~ER~RR~kin~~f~~LrsLv-P~~-~K~dKaSIL~~aI~YIk~Lq~~v~~Le~~~ 541 (687)
.+..-.+.||||=.|+||-|.+|+.-. ++. ...-|+-||..||+||..||.-++++.+..
T Consensus 118 RRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 118 RRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 466778999999999999999997654 343 466899999999999999999999988766
No 20
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.83 E-value=0.01 Score=50.21 Aligned_cols=66 Identities=21% Similarity=0.253 Sum_probs=51.1
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
.|.|.++.++|+|.+|..+|.+++++|+++.+.+.++....+|+..-.+ |..... +..++|++.|.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~---~~~~~~-~~~~~l~~~l~ 68 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDAN---GNPVDP-KTIEAVRQEIG 68 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCC---CCcCCH-HHHHHHHHHhc
Confidence 5778999999999999999999999999999998888777777775332 433343 44556666654
No 21
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.78 E-value=0.015 Score=46.90 Aligned_cols=61 Identities=10% Similarity=0.242 Sum_probs=47.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCC---EEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNG---VFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg---~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
.|.|.|+.|+|+|.+|+++|.++|+.|.++......+ .+...+... ......+.++|+++.
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD--------EEDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE--------GHGHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC--------CCCHHHHHHHHHccc
Confidence 5789999999999999999999999999999998765 333322222 234788888888764
No 22
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.63 E-value=0.0018 Score=66.80 Aligned_cols=59 Identities=27% Similarity=0.366 Sum_probs=51.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhccCC---C-CCCCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 037798 483 SANHVLAERRRREKLNERFIILRSLVP---F-VTKMDKASILGDTIEYVKQLRKKIQDLESRN 541 (687)
Q Consensus 483 ~~~H~~~ER~RR~kin~~f~~LrsLvP---~-~~K~dKaSIL~~aI~YIk~Lq~~v~~Le~~~ 541 (687)
+..++..||+|=+.+|..|..||.+|| . ..|..|..+|.-||.||+.|+.-++.-+...
T Consensus 110 ~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 110 RQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 456777799999999999999999999 3 6789999999999999999999777665443
No 23
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.54 E-value=0.018 Score=49.20 Aligned_cols=66 Identities=12% Similarity=0.270 Sum_probs=56.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
.++|.+.++.|+|++..|..+|.+.|.++..++.++.++.|.+.+.+.+.+ .+.++++.+|.++..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~------~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPE------DSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESH------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCc------ccHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999888763 367889999988754
No 24
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.48 E-value=0.033 Score=47.61 Aligned_cols=51 Identities=22% Similarity=0.396 Sum_probs=44.9
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe--eCCEEEEEEEEEEcc
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL--TNGVFTAQLRAKVKD 662 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~--~dg~l~~tI~aKv~e 662 (687)
.+.|+|.|..|+|+|.+|..+|.+.++.+.+++... .++.+...|..++++
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d 58 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD 58 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC
Confidence 457899999999999999999999999999999998 478999999999985
No 25
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.35 E-value=0.0053 Score=53.86 Aligned_cols=48 Identities=31% Similarity=0.621 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhccCCCC------CCCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 037798 494 REKLNERFIILRSLVPFV------TKMDKASILGDTIEYVKQLRKKIQDLESRN 541 (687)
Q Consensus 494 R~kin~~f~~LrsLvP~~------~K~dKaSIL~~aI~YIk~Lq~~v~~Le~~~ 541 (687)
-+.|++.+..|+.|+|.. .|..-+-+|.+|..||+.|+++|..|..+.
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerL 72 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 72 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999932 334444589999999999999999999988
No 26
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.30 E-value=0.036 Score=45.18 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=41.8
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEc
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVK 661 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~ 661 (687)
.|.|.|+.++|+|.+|+.+|.+.++.|.++.+.+.++.....|++.-.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~ 49 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS 49 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC
Confidence 577899999999999999999999999999998876676677777654
No 27
>PRK00194 hypothetical protein; Validated
Probab=96.17 E-value=0.024 Score=49.57 Aligned_cols=67 Identities=18% Similarity=0.378 Sum_probs=56.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
.++|.|.|+.++|++.+|.+.|.+.|++|..++..+..+.+...+.+.+. +...++.+++++|.++-
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~l~~~l~~l~ 69 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS----ESKKDFAELKEELEELG 69 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec----CCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999999999888888888887777665 22456788888887754
No 28
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.16 E-value=0.047 Score=46.47 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=51.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe-eCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL-TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~-~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
.|-|.|+.|+|+|.+|..+|..+||+|+.+++.+ .||..+-+|...=. ..-....+.++|++.+
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~-----~~~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW-----KRGETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC-----CccchHHHHHHHHHhh
Confidence 3568899999999999999999999999999986 68998888877633 2234567777777765
No 29
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.03 E-value=0.03 Score=68.54 Aligned_cols=71 Identities=13% Similarity=0.190 Sum_probs=59.3
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccC---HHHHHHHHHHHhhc
Q 037798 611 SDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKAS---IVEVKRAINQIIPQ 684 (687)
Q Consensus 611 ~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s---~~eIkqAL~~ii~k 684 (687)
.-.+|+|.|+.|+|||.+|.++|.++||+|++|.++|.++.+.-+|...-.. |.+++ ..+|+++|..++..
T Consensus 807 ~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~---g~~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 807 RRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATAD---RRALNEELQQELRQRLTEALNP 880 (884)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCC---CCcCCHHHHHHHHHHHHHHHhh
Confidence 3458999999999999999999999999999999999999999999886443 66666 35667777766643
No 30
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.99 E-value=0.031 Score=48.87 Aligned_cols=68 Identities=13% Similarity=0.326 Sum_probs=57.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhhc
Q 037798 613 ALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIPQ 684 (687)
Q Consensus 613 vlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~k 684 (687)
.+|.+.|+.++|++.+|.+.|-+.|+++..++..+..+.|...+.+.+. +...++.+++.+|..+..+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~----~~~~~~~~L~~~l~~l~~~ 69 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS----ESNLDFAELQEELEELGKE 69 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC----CCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999988888888877777655 2246688999888876543
No 31
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=95.95 E-value=0.066 Score=45.92 Aligned_cols=66 Identities=9% Similarity=0.155 Sum_probs=56.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhhc
Q 037798 613 ALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIPQ 684 (687)
Q Consensus 613 vlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~k 684 (687)
+.|.+.||.|+|+...|-+.|.+.|..++.++....++.|+..+...+. ..+..+++++|..+..+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~------~~~~~~l~~~l~~~~~~ 67 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS------WDAIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec------cccHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999877766654 24688888888876543
No 32
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=95.79 E-value=0.081 Score=44.97 Aligned_cols=64 Identities=14% Similarity=0.289 Sum_probs=54.0
Q ss_pred EEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeC------CEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 615 VELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTN------GVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 615 IeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~d------g~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
|.|.|+.++|++.+|-+.|.+.|+++..++..+.+ +.|...+...+.. ..+..+++.+|..+-.
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-----~~~~~~l~~~l~~l~~ 71 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-----GTDLDALREELEELCD 71 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-----CCCHHHHHHHHHHHHH
Confidence 67999999999999999999999999999988876 7787777777652 3578899998887653
No 33
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.66 E-value=0.091 Score=44.29 Aligned_cols=66 Identities=15% Similarity=0.311 Sum_probs=50.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe--eCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL--TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~--~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
.|.|.|+.|+|++.+|.+.|.+.|+.+..++..+ ..+.|...+...+.. ...+..+++++|..+-.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~----~~~~~~~l~~~l~~l~~ 68 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEG----FDLSREALEAAFAPVAA 68 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCC----CCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999999999998885 445544444443331 13578999999887654
No 34
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.36 E-value=0.071 Score=65.12 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=56.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCH---HHHHHHHHHHh
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASI---VEVKRAINQII 682 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~---~eIkqAL~~ii 682 (687)
-.+|+|.++.|+|+|.+|.++|.++|++|++|.++|.++.+.-+|...-.. |.+++- .+|+++|..++
T Consensus 783 ~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~---g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 783 QTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQ---GQALDEEERKALKSRLLSNL 853 (854)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCC---CCcCChHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999999999999988886443 655553 56666666654
No 35
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.24 E-value=0.09 Score=64.56 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=63.3
Q ss_pred ceEEEEEE--cCeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCccc----CHHHHH
Q 037798 602 TSVQVSII--ESDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKA----SIVEVK 675 (687)
Q Consensus 602 ~~V~Vsi~--e~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~----s~~eIk 675 (687)
+.|.+.-. .+-..|+|.++.|+|+|.+|..+|..+||+|++|.++|.++.+.-+|...-.+ |..+ ...+|+
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~---g~~l~~~~~~~~l~ 878 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDAD---NQPLSDPQLCSRLQ 878 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCC---CCCCCCHHHHHHHH
Confidence 44444432 23458999999999999999999999999999999999999999999887543 5433 246788
Q ss_pred HHHHHHhhc
Q 037798 676 RAINQIIPQ 684 (687)
Q Consensus 676 qAL~~ii~k 684 (687)
++|.+++..
T Consensus 879 ~~L~~~L~~ 887 (895)
T PRK00275 879 DAICEQLDA 887 (895)
T ss_pred HHHHHHHhc
Confidence 888888754
No 36
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.19 E-value=0.12 Score=43.83 Aligned_cols=65 Identities=12% Similarity=0.190 Sum_probs=55.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
+|.+.++.|+|+..+|-++|.++|+++..+..++..+.|...+.+.+.. ..++.+++++|..+..
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~-----~~~~~~l~~~l~~l~~ 65 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPD-----SADSEALLKDLLFKAH 65 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCC-----CCCHHHHHHHHHHHHH
Confidence 4788999999999999999999999999998888899988888877763 2578899998887653
No 37
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.14 E-value=0.085 Score=44.02 Aligned_cols=64 Identities=13% Similarity=0.251 Sum_probs=48.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee-CCEEEEEEEEEEccccCCcccCHHHHHHHHHHH
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT-NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQI 681 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~-dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~i 681 (687)
.|.|.++.++|+|.+|+++|.+.++++..++.+.. ++.....|...+.+ .......|.++|+++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~----~~~~l~~l~~~L~~i 66 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTST----MNGDIDELLEELREI 66 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCc----hHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999987653 57666777776652 223466666666654
No 38
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.67 E-value=0.32 Score=40.45 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=47.6
Q ss_pred EEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee-CCEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 615 VELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT-NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 615 IeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~-dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
|+|.++.|+|+|.+|+.+|.+.|..+.+++.... ++.....|..++++ ..-...|.++|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~-----~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPS-----EEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCC-----HHHHHHHHHHHhc
Confidence 7889999999999999999999999999998775 57877888887764 1223445555544
No 39
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.43 E-value=0.37 Score=38.94 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=44.1
Q ss_pred EEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee-----CCEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 615 VELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT-----NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 615 IeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~-----dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
|.|.++.++|.|.+|+++|.+.++++.++..... .+.....|+..+.+ ......+.++|++
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~-----~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRG-----AEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCC-----HHHHHHHHHHHHH
Confidence 4678899999999999999999999999987653 46666666666542 1223455555544
No 40
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.37 E-value=0.24 Score=60.72 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=61.8
Q ss_pred ceEEEEEE--cCeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccC---HHHHHH
Q 037798 602 TSVQVSII--ESDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKAS---IVEVKR 676 (687)
Q Consensus 602 ~~V~Vsi~--e~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s---~~eIkq 676 (687)
+.|.+.-. ++-..|+|.++.|+|+|.+|..+|..+||+|++|.++|.++.+.-+|...-.. |.... ..+|++
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~---g~~~~~~~~~~l~~ 860 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEH---DRPLSESARQALRD 860 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC---CCcCChHHHHHHHH
Confidence 45555432 23458999999999999999999999999999999999999999999887443 43332 367777
Q ss_pred HHHHHhh
Q 037798 677 AINQIIP 683 (687)
Q Consensus 677 AL~~ii~ 683 (687)
+|..++.
T Consensus 861 ~L~~~l~ 867 (869)
T PRK04374 861 ALCACLD 867 (869)
T ss_pred HHHHHhc
Confidence 7777663
No 41
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.26 E-value=0.21 Score=60.99 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=55.0
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccC---HHHHHHHHHHHh
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKAS---IVEVKRAINQII 682 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s---~~eIkqAL~~ii 682 (687)
-.+|+|.|+.|+|+|.+|.++|..+|++|.++.++|.++...-.|.+.... |.+++ ...|+++|..++
T Consensus 779 ~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~---g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 779 ATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLF---GLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred eEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCC---CCCCCHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999999988888888887553 54444 345555555543
No 42
>PRK04435 hypothetical protein; Provisional
Probab=94.13 E-value=0.23 Score=48.13 Aligned_cols=70 Identities=10% Similarity=0.181 Sum_probs=55.2
Q ss_pred EEcCeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe-eCCEEEEEEEEEEccccCCcccCHHHHHHHHHHH
Q 037798 608 IIESDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL-TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQI 681 (687)
Q Consensus 608 i~e~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~-~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~i 681 (687)
..+..+.|.+.++.++|+|.+|++.|.+.+.+|.+++.+. .+|....+|...+.+ ....+.+|..+|+++
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~----~~~~L~~Li~~L~~i 135 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSS----MEGDIDELLEKLRNL 135 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCC----hHHHHHHHHHHHHcC
Confidence 4566788999999999999999999999999999998766 468777778777763 223566777776653
No 43
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.11 E-value=0.28 Score=59.42 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=60.2
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhhc
Q 037798 611 SDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIPQ 684 (687)
Q Consensus 611 ~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~k 684 (687)
+-+.|.|.|+.|+|++.+|..+|..+|++|+++++.+.||.++.+|.+.-.. |.....+.|+++|.+++..
T Consensus 598 ~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~---~~~~~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 598 HMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRF---GSPPDAALLRQDLRRALDG 668 (774)
T ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC---CCcchHHHHHHHHHHHHcC
Confidence 4458899999999999999999999999999999999999999998886443 4434468899999888764
No 44
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.07 E-value=0.28 Score=60.64 Aligned_cols=80 Identities=15% Similarity=0.205 Sum_probs=63.6
Q ss_pred ceEEEEEE--cCeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCccc----CHHHHH
Q 037798 602 TSVQVSII--ESDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKA----SIVEVK 675 (687)
Q Consensus 602 ~~V~Vsi~--e~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~----s~~eIk 675 (687)
+.|.+.-. +.-..|+|.|+.|+|+|.+|..+|.++|++|.++.++|.++...-+|.+.-.+ |.++ ...+|+
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~---g~~i~~~~~~~~l~ 907 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLF---GLKITNEARQAAIR 907 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCC---CCcCCCHHHHHHHH
Confidence 45555433 23458999999999999999999999999999999999999999999887543 4322 256788
Q ss_pred HHHHHHhhc
Q 037798 676 RAINQIIPQ 684 (687)
Q Consensus 676 qAL~~ii~k 684 (687)
++|.+++..
T Consensus 908 ~~L~~~L~~ 916 (931)
T PRK05092 908 RALLAALAE 916 (931)
T ss_pred HHHHHHhcC
Confidence 898888753
No 45
>PRK03381 PII uridylyl-transferase; Provisional
Probab=93.81 E-value=0.37 Score=58.44 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=49.4
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccC
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKAS 670 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s 670 (687)
-..|+|.|+.|+|+|.+|..+|..+|++|+++.++|.++.+.-+|...-.+ |..++
T Consensus 707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~---g~~~~ 762 (774)
T PRK03381 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAA---GGPLA 762 (774)
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCC---CCcCc
Confidence 369999999999999999999999999999999999999999999887543 54443
No 46
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=93.65 E-value=0.42 Score=40.34 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=37.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEc
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVK 661 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~ 661 (687)
.|+|.|..|.|+|.+|+++|.+.+..+.++++... +. ..|...+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~ 46 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTI 46 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEec
Confidence 47899999999999999999999999999998776 55 33444454
No 47
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=93.51 E-value=0.35 Score=59.13 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=58.4
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEE-eeCCEEEEEEEEEEccccCCcccC----HHHHHHHHHHHhhc
Q 037798 611 SDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSF-LTNGVFTAQLRAKVKDNVNGKKAS----IVEVKRAINQIIPQ 684 (687)
Q Consensus 611 ~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS-~~dg~l~~tI~aKv~en~~G~~~s----~~eIkqAL~~ii~k 684 (687)
+-..|.|.++.|+|+|.+|..+|..+||+|++|+++ +.+|.++-+|..+-.. |.... ...|+++|.+++..
T Consensus 667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~---g~~~~~~~~~~~i~~~L~~~L~~ 742 (850)
T TIGR01693 667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF---GSPPAAERVFQELLQGLVDVLAG 742 (850)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCC---CCCCCcHHHHHHHHHHHHHHHcC
Confidence 345899999999999999999999999999999999 6799999899887654 43332 45688888888754
No 48
>PRK03059 PII uridylyl-transferase; Provisional
Probab=93.46 E-value=0.34 Score=59.37 Aligned_cols=70 Identities=10% Similarity=0.138 Sum_probs=55.5
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCC-cccCHHHHHHHHHHHhh
Q 037798 611 SDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNG-KKASIVEVKRAINQIIP 683 (687)
Q Consensus 611 ~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G-~~~s~~eIkqAL~~ii~ 683 (687)
+-..|+|.|+.|+|+|.+|..+|..+||+|++|.++|.++.+.-+|...-.. . ..-....|+++|.++|.
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~---~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSG---LSDNRLQIQLETELLDALA 855 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCC---CCCHHHHHHHHHHHHHHhc
Confidence 3458999999999999999999999999999999999999999999883110 1 11234577777777653
No 49
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.12 E-value=0.52 Score=57.77 Aligned_cols=71 Identities=11% Similarity=0.266 Sum_probs=57.4
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe-eCCEEEEEEEEEEccccCCcccCH---HHHHHHHHHHhhc
Q 037798 611 SDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL-TNGVFTAQLRAKVKDNVNGKKASI---VEVKRAINQIIPQ 684 (687)
Q Consensus 611 ~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~-~dg~l~~tI~aKv~en~~G~~~s~---~eIkqAL~~ii~k 684 (687)
+-..|.|.|+.|+|+|.+|..+|..+||+|+++++.+ .+|.++-+|.+.-.+ |..++. ..|+++|.+++..
T Consensus 676 ~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~---g~~~~~~~~~~l~~~L~~aL~~ 750 (854)
T PRK01759 676 GGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELN---GKLLEFDRRRQLEQALTKALNT 750 (854)
T ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCC---CCCCCHHHHHHHHHHHHHHHcC
Confidence 4458999999999999999999999999999999877 899999999886443 543433 3577788777753
No 50
>PRK05007 PII uridylyl-transferase; Provisional
Probab=92.78 E-value=0.7 Score=56.88 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=56.6
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe-eCCEEEEEEEEEEccccCCcccC---HHHHHHHHHHHhhc
Q 037798 611 SDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL-TNGVFTAQLRAKVKDNVNGKKAS---IVEVKRAINQIIPQ 684 (687)
Q Consensus 611 ~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~-~dg~l~~tI~aKv~en~~G~~~s---~~eIkqAL~~ii~k 684 (687)
+-..|.|.|+.|+|+|.+|..+|..+||+|+++++.+ .+|.++-+|...-.+ |...+ ...|+++|.+++..
T Consensus 700 ~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~---g~~~~~~~~~~I~~~L~~aL~~ 774 (884)
T PRK05007 700 GGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPD---GSPLSQDRHQVIRKALEQALTQ 774 (884)
T ss_pred CeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCC---CCCCCHHHHHHHHHHHHHHHcC
Confidence 3568999999999999999999999999999999876 577988888776443 44333 34578888887754
No 51
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=92.21 E-value=0.7 Score=35.84 Aligned_cols=61 Identities=25% Similarity=0.434 Sum_probs=43.9
Q ss_pred EEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeC-CEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 615 VELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTN-GVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 615 IeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~d-g~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
|+|.|+.++|.+.+|++.|.+.++++..+.....+ +.....+..++.. ......+.++|..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 62 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD-----LEHLARIMRKLRQ 62 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC-----HHHHHHHHHHHhC
Confidence 46789999999999999999999999998877654 5555566665542 1234455555543
No 52
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=0.59 Score=56.15 Aligned_cols=78 Identities=13% Similarity=0.198 Sum_probs=60.4
Q ss_pred ceEEEEEE--cCeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHH
Q 037798 602 TSVQVSII--ESDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAIN 679 (687)
Q Consensus 602 ~~V~Vsi~--e~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~ 679 (687)
|.|.+.-. .+.-+||+.+..|+|+|..|-.+|.+++|+++++.++|.+..+.-+|...... |.++ -.+++++|.
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~---~~~l-~~~~~q~l~ 854 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDAD---GQAL-NAELRQSLL 854 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccc---cccC-CHHHHHHHH
Confidence 55655533 23458999999999999999999999999999999999999877777776654 5555 455666666
Q ss_pred HHhh
Q 037798 680 QIIP 683 (687)
Q Consensus 680 ~ii~ 683 (687)
+.+-
T Consensus 855 ~~ll 858 (867)
T COG2844 855 QRLL 858 (867)
T ss_pred HHHH
Confidence 5543
No 53
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=91.03 E-value=0.96 Score=55.80 Aligned_cols=70 Identities=6% Similarity=0.155 Sum_probs=56.2
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEE-EeeCCEEEEEEEEEEccccCCcc-c----CHHHHHHHHHHHhh
Q 037798 611 SDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQS-FLTNGVFTAQLRAKVKDNVNGKK-A----SIVEVKRAINQIIP 683 (687)
Q Consensus 611 ~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqs-S~~dg~l~~tI~aKv~en~~G~~-~----s~~eIkqAL~~ii~ 683 (687)
+-+.|.|.|+.|+|+|.+|..+|..+||+|+.|++ ++.||..+-+|.+.-.+ |.. . ..+.|.++|.+++.
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~---g~~~~~~~~r~~~i~~~L~~~L~ 778 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDD---GEPIGDNPARIEQIREGLTEALR 778 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCC---CCCccchHHHHHHHHHHHHHHHc
Confidence 34578999999999999999999999999999998 55789988888876543 432 1 24568888888765
No 54
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=90.91 E-value=0.87 Score=36.39 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=45.6
Q ss_pred EEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeC--CEEEEEEEEEEccccCCcccCHHHHHHHHHHH
Q 037798 615 VELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTN--GVFTAQLRAKVKDNVNGKKASIVEVKRAINQI 681 (687)
Q Consensus 615 IeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~d--g~l~~tI~aKv~en~~G~~~s~~eIkqAL~~i 681 (687)
|.|.++.++|+|.+|++.|.+.++.+.++.+.... +...+.|+. . . ....++.+.|+++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~----~--~~~~~l~~~l~~~ 62 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--D----S--PVPEEVLEELKAL 62 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--C----C--CCCHHHHHHHHcC
Confidence 67889999999999999999999999999887753 666666655 3 1 1356777777654
No 55
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=90.88 E-value=1.4 Score=47.27 Aligned_cols=68 Identities=13% Similarity=0.287 Sum_probs=56.6
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe--eCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL--TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~--~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
.+.|.+.|+.|+|+..+|-++|.++|+.+...+.++ ..|.|...+.+.+. ....+..+++++|..+-.
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~----~~~~~~~~L~~~L~~l~~ 75 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD----GLIFNLETLRADFAALAE 75 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC----CCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999998 88887777776662 233568899999887654
No 56
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.80 E-value=1.7 Score=35.51 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=37.8
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee-C-CEEEEEEEEEE
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT-N-GVFTAQLRAKV 660 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~-d-g~l~~tI~aKv 660 (687)
+|.|.+..++|+|.+|+..|.+.+..+.++..... + +.....|...+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~ 50 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE 50 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc
Confidence 68899999999999999999999999999877653 3 55555555544
No 57
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=90.80 E-value=2.2 Score=36.42 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=45.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee-CCEEEEEEEEEEccccCCcccCHHHHHHHHHHH
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT-NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQI 681 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~-dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~i 681 (687)
.|.+.-+.++|.|.+|++.|.+.++.++++.+... ++...+.|++.+. |. .....++.+|..+
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~----~~-~~~~~~~~~l~~l 66 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE----GH-IEDPNVAEALEEL 66 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE----CC-CCCHHHHHHHHHH
Confidence 45566678999999999999999999999987764 4455577777766 32 3345555555444
No 58
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.61 E-value=1.7 Score=35.04 Aligned_cols=60 Identities=20% Similarity=0.330 Sum_probs=43.0
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee-CCEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT-NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~-dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
.|.+.++.++|.|.+|++.|.+.++.+.++..... ++.....| .+. +. ....++.++|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i--~~~----~~-~~~~~~~~~L~~ 62 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYM--ELE----GV-GDIEELVEELRS 62 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEE--EEe----cc-ccHHHHHHHHhC
Confidence 46788999999999999999999999998887765 35544443 333 11 245566666654
No 59
>PRK08577 hypothetical protein; Provisional
Probab=90.53 E-value=1.9 Score=40.94 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=51.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee--CCEEEEEEEEEEccccCCcccCHHHHHHHHHHH
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT--NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQI 681 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~--dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~i 681 (687)
.+.|.|.+..++|+|.+|++.|.+.+.++.++++... ++.+...+...+.. ......++.++|+++
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~----~~~~l~~l~~~L~~l 123 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSK----SDIDLEELEEELKKL 123 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCC----chhhHHHHHHHHHcC
Confidence 5689999999999999999999999999998877663 56666777777763 113466777776653
No 60
>PRK03059 PII uridylyl-transferase; Provisional
Probab=90.20 E-value=1.4 Score=54.14 Aligned_cols=71 Identities=8% Similarity=0.073 Sum_probs=56.6
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEE-eeCCEEEEEEEEEEccccCCcc---cCHHHHHHHHHHHhhc
Q 037798 611 SDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSF-LTNGVFTAQLRAKVKDNVNGKK---ASIVEVKRAINQIIPQ 684 (687)
Q Consensus 611 ~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS-~~dg~l~~tI~aKv~en~~G~~---~s~~eIkqAL~~ii~k 684 (687)
+-+.|-|.|+.|+|+|.+|.-+|..+||+|++|++. +.||+++-+|.+.-.. |.. ...+.|+++|.+++..
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~---~~~~~~~~~~~i~~~l~~~l~~ 751 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPE---EDVHYRDIINLVEHELAERLAE 751 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCC---CCCChHHHHHHHHHHHHHHHcC
Confidence 445789999999999999999999999999999995 5799999988876432 331 1356678888887754
No 61
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=89.93 E-value=1.8 Score=34.75 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=38.1
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee--CCEEEEEEEEEE
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT--NGVFTAQLRAKV 660 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~--dg~l~~tI~aKv 660 (687)
.|.+.+..++|+|.+|+..|.+.++.+.++..... ++...+.|..++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 46788899999999999999999999999987763 566666665554
No 62
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=89.69 E-value=2 Score=46.09 Aligned_cols=63 Identities=13% Similarity=0.277 Sum_probs=52.7
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee--CCEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT--NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~--dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
.|.+.|+.++|+...|-+.|-+.|..++.++.+.. .++|+..+...+. +...+.++++++|..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~----~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE----GFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC----CCCCCHHHHHHHHHH
Confidence 47899999999999999999999999999988875 4888766666554 234688999999888
No 63
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=89.44 E-value=0.29 Score=55.30 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=47.6
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhccCC----CCCCCCccchHHHHHHHHHHHHHHHHH
Q 037798 481 EMSANHVLAERRRREKLNERFIILRSLVP----FVTKMDKASILGDTIEYVKQLRKKIQD 536 (687)
Q Consensus 481 ~~~~~H~~~ER~RR~kin~~f~~LrsLvP----~~~K~dKaSIL~~aI~YIk~Lq~~v~~ 536 (687)
|.|...++.||-|-..||+-|++|..|.- +...-.|..||..|+.-|-.|+++|.|
T Consensus 525 ERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 525 ERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999998875 223346899999999999999999875
No 64
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=89.34 E-value=2.4 Score=35.62 Aligned_cols=63 Identities=14% Similarity=0.213 Sum_probs=42.9
Q ss_pred EEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCC-EEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 616 ELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNG-VFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 616 eI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg-~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
-+..+.++|.|.+|++.+.+.|+.++++++.-..+ ...+.|...+..+ -.......+...|.+
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~--~~~~~~~~~l~~l~~ 66 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGH--IDDPDVKEALEELKR 66 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECC--CCCHHHHHHHHHHHH
Confidence 34557899999999999999999999998886543 4445555555510 023445555555554
No 65
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=89.34 E-value=2.7 Score=30.57 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=30.9
Q ss_pred EEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeC
Q 037798 615 VELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTN 649 (687)
Q Consensus 615 IeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~d 649 (687)
|.+.|+.++|.+.+|++.|...++.+..+..+..+
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999999999999999999999999876643
No 66
>PRK07334 threonine dehydratase; Provisional
Probab=89.21 E-value=2.1 Score=47.90 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=49.9
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee-----CCEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT-----NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~-----dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
.+.|+|.+..|+|+|.+|+.+|.+.++.|.++++... ++.....|..+|++ ..-...|.++|++
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d-----~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD-----AAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC-----HHHHHHHHHHHHH
Confidence 4789999999999999999999999999999998764 67877777777764 1223445555544
No 67
>PRK05092 PII uridylyl-transferase; Provisional
Probab=88.50 E-value=2.4 Score=52.56 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=60.1
Q ss_pred ceEEEEEE--cCeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe-eCCEEEEEEEEEEccccCCcc----cCHHHH
Q 037798 602 TSVQVSII--ESDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL-TNGVFTAQLRAKVKDNVNGKK----ASIVEV 674 (687)
Q Consensus 602 ~~V~Vsi~--e~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~-~dg~l~~tI~aKv~en~~G~~----~s~~eI 674 (687)
+.|.+... .+-..|.|.|+.|+|+|.+|..+|..+|++|+++++++ .||+.+.+|..+-.. |.. -....|
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~---g~~~~~~~~~~~l 796 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAF---GRDEDEPRRLARL 796 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCC---CCCCCCHHHHHHH
Confidence 34444433 24568999999999999999999999999999999887 688877778776543 422 236678
Q ss_pred HHHHHHHhh
Q 037798 675 KRAINQIIP 683 (687)
Q Consensus 675 kqAL~~ii~ 683 (687)
.++|.+++.
T Consensus 797 ~~~L~~~l~ 805 (931)
T PRK05092 797 AKAIEDALS 805 (931)
T ss_pred HHHHHHHHc
Confidence 888888774
No 68
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=87.89 E-value=3.1 Score=44.77 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=53.4
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe--eCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL--TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~--~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
.+.|.|.|+.|+|+..+|-+.|-++++++..++..+ .++.|...+...+. ...+..+++++|..+-.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-----~~~~~~~L~~~L~~l~~ 75 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-----EGLDEDALRAGFAPIAA 75 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-----CCCCHHHHHHHHHHHHH
Confidence 467889999999999999999999999999998864 56676655554444 23679999999987644
No 69
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=87.78 E-value=1.7 Score=39.54 Aligned_cols=54 Identities=19% Similarity=0.328 Sum_probs=34.9
Q ss_pred CCccceecccCCeeEee-CCCCCCCCccccccCCCeEEEEeeCC-----cEEEecccccc
Q 037798 120 VGLPGKAYARQQHVWLT-GANEVDSKTFSRAILAKTVVCIPFLD-----GVVELGTTEKV 173 (687)
Q Consensus 120 ~GlpG~a~~~g~~~Wl~-~~~~~~~~~f~R~~lAkTvvciP~~~-----GVvELGSte~V 173 (687)
.|+.+.++.+++++|+. ...........+..-.+.++|||+.. |||.|++.+.-
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~ 126 (148)
T PF13185_consen 67 VGLWEGVLRTGEPIIINDDDSSFPPWELARHPGIRSILCVPLRSGGEVIGVLSLYSKEPN 126 (148)
T ss_dssp EETTSHHHHHTS-EEESCCCGGGSTTHHHCCTT-SEEEEEEEEETTEEEEEEEEEESSTT
T ss_pred hhHHHHHHhcCceEEEeCccccccchhhhccccCCEEEEEEEeECCEEEEEEEEeeCCCC
Confidence 34555559999999999 22222223334444445999999866 99999997763
No 70
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.22 E-value=3.3 Score=34.98 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=51.8
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHH
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQI 681 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~i 681 (687)
.|.|.||.+.|+-.++...+-++||.++....|+.+..-+..+-..-+. ....+.-.-+|+.|.++
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~--~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRP--PSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCC--CCCcccHHHHHHHHHhc
Confidence 5789999999999999999999999999999998887666655554332 12456677888887654
No 71
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.19 E-value=2.6 Score=33.77 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=41.5
Q ss_pred EEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee--CCEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 615 VELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT--NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 615 IeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~--dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
|.+.++.++|.|.+|...|.+.++.+.++..... ++...+.| .+.. . ...++.++|++
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i--~v~~----~--~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVI--EVDQ----P--IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEE--EeCC----C--CCHHHHHHHHc
Confidence 6788999999999999999999999998876652 34544443 3331 1 35566666654
No 72
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=86.63 E-value=4.9 Score=32.99 Aligned_cols=45 Identities=27% Similarity=0.249 Sum_probs=35.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEE
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKV 660 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv 660 (687)
.|.|..+.++|.|.+|+++|.+.|+.|.++-+....+. ..++.++
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 46678899999999999999999999998877665542 4455555
No 73
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=86.53 E-value=0.45 Score=46.40 Aligned_cols=50 Identities=30% Similarity=0.440 Sum_probs=45.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhccCC--CCCCCCccchHHHHHHHHHHHHH
Q 037798 483 SANHVLAERRRREKLNERFIILRSLVP--FVTKMDKASILGDTIEYVKQLRK 532 (687)
Q Consensus 483 ~~~H~~~ER~RR~kin~~f~~LrsLvP--~~~K~dKaSIL~~aI~YIk~Lq~ 532 (687)
+.-|++.||+|=..||+-|..||.++| .+.|..|.--|.-|..||..|-+
T Consensus 79 rv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 79 RVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 667999999999999999999999999 56788888889999999998865
No 74
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=86.52 E-value=0.41 Score=56.24 Aligned_cols=42 Identities=45% Similarity=0.618 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCC----CCCCCCccchHHHHHHHHHH
Q 037798 488 LAERRRREKLNERFIILRSLVP----FVTKMDKASILGDTIEYVKQ 529 (687)
Q Consensus 488 ~~ER~RR~kin~~f~~LrsLvP----~~~K~dKaSIL~~aI~YIk~ 529 (687)
-+-|-||.|-|+-|..|..+|| ..+..|||||+.=||-|+|-
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 4568899999999999999999 34678999999999999873
No 75
>PRK04374 PII uridylyl-transferase; Provisional
Probab=86.13 E-value=3.3 Score=51.05 Aligned_cols=71 Identities=11% Similarity=0.128 Sum_probs=57.2
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe-eCCEEEEEEEEEEccccCCc-ccCHHHHHHHHHHHhhc
Q 037798 611 SDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL-TNGVFTAQLRAKVKDNVNGK-KASIVEVKRAINQIIPQ 684 (687)
Q Consensus 611 ~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~-~dg~l~~tI~aKv~en~~G~-~~s~~eIkqAL~~ii~k 684 (687)
+-+.|-|.|+.++|+|.+|.-+|..+||+|++|++.+ .||..+-+|.+.-.+ |. ......|.++|.+++..
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~---~~~~~~~~~i~~~l~~~l~~ 761 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQD---TYADGDPQRLAAALRQVLAG 761 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCC---CCChHHHHHHHHHHHHHHcC
Confidence 3457889999999999999999999999999999987 799999999886432 32 23355688888887754
No 76
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=84.99 E-value=0.69 Score=51.33 Aligned_cols=42 Identities=45% Similarity=0.598 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC----CCCCCccchHHHHHHHHHH
Q 037798 488 LAERRRREKLNERFIILRSLVPF----VTKMDKASILGDTIEYVKQ 529 (687)
Q Consensus 488 ~~ER~RR~kin~~f~~LrsLvP~----~~K~dKaSIL~~aI~YIk~ 529 (687)
-+-|.||++-|-.|..|..++|- .+..||++|+.=|..|||-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 35689999999999999999993 3679999999999999985
No 77
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.60 E-value=9.3 Score=31.33 Aligned_cols=59 Identities=12% Similarity=0.258 Sum_probs=43.2
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee--CCEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT--NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~--dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
.|.+..+.++|.|.+|++.|.+.++.+.++..... .+.-.+.|+....+ ..+++++|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~--------~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN--------PRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC--------HHHHHHHHHH
Confidence 56778899999999999999999999988764432 35555566654432 4577777764
No 78
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=84.52 E-value=0.68 Score=53.06 Aligned_cols=39 Identities=38% Similarity=0.731 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhccCCC----CCCCCccchHHHHHHHHHH
Q 037798 491 RRRREKLNERFIILRSLVPF----VTKMDKASILGDTIEYVKQ 529 (687)
Q Consensus 491 R~RR~kin~~f~~LrsLvP~----~~K~dKaSIL~~aI~YIk~ 529 (687)
+|-|+|||..+..|.+|+|. ++|.||.|||.=++.|++-
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence 34489999999999999994 5899999999999999863
No 79
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=84.03 E-value=5.8 Score=48.20 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=43.4
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCCCc-ccccc--CCCeEEEEeeCC-----cEEEecccccccCCH
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDSKT-FSRAI--LAKTVVCIPFLD-----GVVELGTTEKVPEDL 177 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~-f~R~~--lAkTvvciP~~~-----GVvELGSte~V~Ed~ 177 (687)
.|+.|+|+.|+++.+|+++++.+...-+... +.... -.+.++|||+.. |||.+.....-.-+.
T Consensus 67 ~l~~geGi~G~Va~tg~pV~V~Dv~~dprf~~~~~~~~~~~~S~L~VPL~~~geVIGVL~v~~~~~~~Fs~ 137 (748)
T PRK11061 67 TLAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPSVKEERFRAFLGVPIIYRRQLLGVLVVQQRELRQFDE 137 (748)
T ss_pred eccCCcchHHHHhccCceEEECCcccCcccccCccccCccceEEEEEEEeeCCEEEEEEEEeeCCCCCCCH
Confidence 5667999999999999999998776432221 12111 123899999877 888887776533333
No 80
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=83.41 E-value=7.1 Score=33.15 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=44.4
Q ss_pred EEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeC-CEEEEEEEEEEccccCCcccCHHHHHHHHHHHhhcc
Q 037798 616 ELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTN-GVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIPQY 685 (687)
Q Consensus 616 eI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~d-g~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~k~ 685 (687)
-+..+.++|.|.+||+.+...|+.++++.|.-.. ...-+.|...+. | ....++++|..+-..|
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~----~---~~~~~~~~l~~L~~~~ 67 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCE----V---DRGDLDQLISSLRRVV 67 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEE----c---ChHHHHHHHHHHHHhc
Confidence 3455789999999999999999999999988643 344456666665 3 2334666666554433
No 81
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=83.06 E-value=5.3 Score=38.46 Aligned_cols=67 Identities=12% Similarity=0.256 Sum_probs=54.1
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe-eCCEEEEEEEEEEccccCCcccCHHHHHHHHHHH
Q 037798 611 SDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL-TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQI 681 (687)
Q Consensus 611 ~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~-~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~i 681 (687)
..+.+.+.-..|-|.|.++++++-..++.|++++=+. .+|+.-.||..... +...++++|..+|+++
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s----sm~~~V~~ii~kl~k~ 138 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS----SMEKDVDKIIEKLRKV 138 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch----hhhhhHHHHHHHHhcc
Confidence 3557778889999999999999999999999987665 68888777776665 4456788888888764
No 82
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=82.74 E-value=5.4 Score=43.05 Aligned_cols=69 Identities=14% Similarity=0.286 Sum_probs=50.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEE--eeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSF--LTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS--~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
.+.|.|.|+.|+|+...|-+.|-+.|+.++.++-. +..+.|+..+...... ....+..+++++|..+-.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~---~~~~~~~~l~~~l~~l~~ 79 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQS---AEAASVDTFRQEFQPVAE 79 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCC---CCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999998874 3334444333332211 135688999999887643
No 83
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.61 E-value=9.1 Score=31.83 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=43.5
Q ss_pred EEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee---CCEEEEEEEEEEccccCCcccCHHHHHHHHHHH
Q 037798 615 VELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT---NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQI 681 (687)
Q Consensus 615 IeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~---dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~i 681 (687)
+.+.=+.++|.|.+|++.|.+.|..++++..... .+.-...++..+.. .+ ....|+++|.+.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~--~~---~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMD--RS---KENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEec--ch---HHHHHHHHHhCc
Confidence 4566689999999999999999999999876653 34444555554421 01 266777777654
No 84
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.41 E-value=8.5 Score=31.46 Aligned_cols=35 Identities=11% Similarity=0.271 Sum_probs=30.2
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT 648 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~ 648 (687)
-+.+.++.++|.|.+|++.|.+.++++.++.....
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 46778899999999999999999999998865553
No 85
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=79.13 E-value=7.4 Score=30.63 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=34.8
Q ss_pred EEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeC-CEEEEEEEE
Q 037798 615 VELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTN-GVFTAQLRA 658 (687)
Q Consensus 615 IeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~d-g~l~~tI~a 658 (687)
|.+.++.++|.|.+|.+.|.+.++.+.++.....+ +.-.+.|..
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v 45 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIF 45 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEE
Confidence 45788999999999999999999999998877654 444444433
No 86
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=78.78 E-value=5.8 Score=32.43 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=42.5
Q ss_pred EEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe--eCCEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 615 VELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL--TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 615 IeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~--~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
+-+..+.++|.+.+|.+.|.+.|+.+.++.++. .++...+.|+.... ...++.++|.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~--------~~~~~~~~l~~ 61 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP--------VPDEVLEELRA 61 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC--------CCHHHHHHHHc
Confidence 345788999999999999999999999887765 35666666655432 23466666654
No 87
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=77.85 E-value=2.3 Score=34.66 Aligned_cols=57 Identities=18% Similarity=0.063 Sum_probs=40.6
Q ss_pred EEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 616 ELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 616 eI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
-+.+..++|+|.+|+..|.+.+..+..+.....++.....|...+. ...++.++|++
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~--------~l~~li~~l~~ 59 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE--------VSEELLEALRA 59 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC--------CCHHHHHHHHc
Confidence 3577899999999999999999999877655555666555544332 34566666654
No 88
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=77.61 E-value=12 Score=45.59 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=44.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee--CCEEEEEEEEEEcc
Q 037798 613 ALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT--NGVFTAQLRAKVKD 662 (687)
Q Consensus 613 vlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~--dg~l~~tI~aKv~e 662 (687)
+.|.|.+..|.|+|.+|..+|.+.++.|.++++... ++++...|..+|++
T Consensus 667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~ 718 (743)
T PRK10872 667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN 718 (743)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC
Confidence 579999999999999999999999999999998764 68888888888874
No 89
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=77.19 E-value=8.8 Score=31.91 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=43.1
Q ss_pred CCCChHHHHHHHHHhcCcEEEEEEEEe--eCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 621 NKEGLLLDIMQMLRELLIEVTAVQSFL--TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 621 ~reglLl~Im~aLeeL~LdV~sVqsS~--~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
.++|.|.+|+..+..-|+.+.+..++. .+++..++|.++- ..-.++.|.+.|.|++.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~------~~~~i~~l~~Ql~Klid 59 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG------DDREIEQLVKQLEKLID 59 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-------CCHHHHHHHHHHCSTT
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee------CchhHHHHHHHHhccCC
Confidence 378999999999999999888888877 7888877776653 23557777777777653
No 90
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=76.37 E-value=13 Score=44.83 Aligned_cols=51 Identities=10% Similarity=0.187 Sum_probs=45.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee-CCEEEEEEEEEEcc
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT-NGVFTAQLRAKVKD 662 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~-dg~l~~tI~aKv~e 662 (687)
.+.|.|.+.+|+|+|.+|+.+|.+.+..|.++++... ++++...|...|++
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 661 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN 661 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC
Confidence 3579999999999999999999999999999998876 58888888888874
No 91
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.25 E-value=12 Score=29.85 Aligned_cols=56 Identities=20% Similarity=0.330 Sum_probs=38.8
Q ss_pred EEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeC--CEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 615 VELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTN--GVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 615 IeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~d--g~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
|.|.-+.++|.|.+|++.|.+.++.+.++..+... +...+.| ++. + ...+++.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~--~ve----~----~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIF--RTE----D----IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEE--EeC----C----HHHHHHHHHH
Confidence 56677899999999999999999999887765443 4433333 332 1 5566666654
No 92
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=76.06 E-value=12 Score=36.95 Aligned_cols=63 Identities=8% Similarity=0.189 Sum_probs=48.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee--CCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT--NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~--dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
.|.|.-+.++|.|.+|...|...|+.+.++..... ++....+|+..-. ...++.|.+.|.|++
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d------~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGD------DKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECC------HHHHHHHHHHHhcCc
Confidence 46778889999999999999999999998887764 4777777777542 234666777776655
No 93
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=75.90 E-value=13 Score=44.81 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=44.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeC-CEEEEEEEEEEcc
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTN-GVFTAQLRAKVKD 662 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~d-g~l~~tI~aKv~e 662 (687)
.+.|.|.+.+|.|+|.+|+.+|.+.++.+.++++...+ +++...|...|++
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 677 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD 677 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC
Confidence 35799999999999999999999999999999987754 6777888888874
No 94
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.36 E-value=21 Score=32.01 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=37.6
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee-CCEEEEEEEEEEc
Q 037798 613 ALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT-NGVFTAQLRAKVK 661 (687)
Q Consensus 613 vlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~-dg~l~~tI~aKv~ 661 (687)
..|-+..+.++|.|.+||..+...|+.++++.|.-. ....-+.|...+.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDie 64 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLD 64 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE
Confidence 345556688999999999999999999999998763 3334456666665
No 95
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=74.91 E-value=4.2 Score=47.08 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=49.1
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCCCc-c--ccccCCCeEEEEeeCC-----cEEEeccccc----ccCCHHHHHH
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDSKT-F--SRAILAKTVVCIPFLD-----GVVELGTTEK----VPEDLALVQH 182 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~-f--~R~~lAkTvvciP~~~-----GVvELGSte~----V~Ed~~lv~~ 182 (687)
.|..|+|+.|+++.+++++++.+...-.... . ....-.++++|||+.. |||.+.+... -.+|.+|+..
T Consensus 68 ~~~~~~gi~g~v~~~~~pvii~Dv~~d~~~~~~~~~~~~~~~S~l~VPL~~~g~viGvL~v~s~~~~~~ft~~d~~lL~~ 147 (534)
T TIGR01817 68 RYRVGEGAIGQIVATGNSLVVPDVAAEPLFLDRLSLYDPGPVPFIGVPIKADSETIGVLAADRDFRSRERLEEEVRFLEM 147 (534)
T ss_pred cccCCccHHHHHHhcCCeEEecccccCchhhhccccccCCcceEEEEEEcCCCEEEEEEEEEeccccccccHHHHHHHHH
Confidence 4566999999999999999999875322110 0 0112235999999965 9999998753 3456666665
Q ss_pred HHHH
Q 037798 183 VKSL 186 (687)
Q Consensus 183 ik~~ 186 (687)
+-..
T Consensus 148 lA~~ 151 (534)
T TIGR01817 148 VANL 151 (534)
T ss_pred HHHH
Confidence 5444
No 96
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=72.71 E-value=2.1 Score=45.40 Aligned_cols=50 Identities=26% Similarity=0.381 Sum_probs=44.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhccCC---CCCCCCccchHHHHHHHHHHHHH
Q 037798 483 SANHVLAERRRREKLNERFIILRSLVP---FVTKMDKASILGDTIEYVKQLRK 532 (687)
Q Consensus 483 ~~~H~~~ER~RR~kin~~f~~LrsLvP---~~~K~dKaSIL~~aI~YIk~Lq~ 532 (687)
+..-+..||+|--.+|+-|..||.++| ...|+.|+-.|.-|-+||..|+.
T Consensus 73 R~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 73 RLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred cccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 556678899999999999999999999 45788999999999999998875
No 97
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=72.68 E-value=8.7 Score=39.00 Aligned_cols=66 Identities=8% Similarity=0.026 Sum_probs=54.5
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 611 SDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 611 ~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
..++|.+.++.|+|+...|-++|-+.|..+...+.+..+|.|...+.+... ..++..++.+|...-
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~------~~~~~~le~~L~~l~ 72 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS------WNAITLIESTLPLKG 72 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC------hhHHHHHHHHHHhhh
Confidence 456788999999999999999999999999999999999988887766433 346777777776543
No 98
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=72.55 E-value=17 Score=36.15 Aligned_cols=63 Identities=13% Similarity=0.221 Sum_probs=47.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee--CCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT--NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~--dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
.|.|.-+.++|.|.+|...|...|+.+.++..... ++...++|++.-. .-.++.|.+-|.+++
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~------~~~i~qi~kQl~KLi 68 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGD------EQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECC------HHHHHHHHHHHhccc
Confidence 57778889999999999999999999998877754 4777777776532 234666666666654
No 99
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=71.28 E-value=24 Score=30.73 Aligned_cols=62 Identities=10% Similarity=0.192 Sum_probs=47.0
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe--eCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL--TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~--~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
.|.+.-..++|+|.+|+..+..-|..|.+..... .+++...+|.+. . ...++.|.+-|.|++
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~------~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-S------ERPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-C------CchHHHHHHHHhcCc
Confidence 5677778999999999999999888888777766 566666666653 2 355777777777665
No 100
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=71.22 E-value=7.7 Score=35.00 Aligned_cols=67 Identities=10% Similarity=0.256 Sum_probs=54.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
.++|.|.-..|+|+...|..+|-++++.++.+.=+..+|+|...+-+.... ...+..+++..|....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~----~~~d~~~lr~~l~~~~ 69 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISK----EVVDFAALRDELAAEG 69 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCCh----HhccHHHHHHHHHHHH
Confidence 357788888999999999999999999999998888999999888776642 4566777777666544
No 101
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.84 E-value=32 Score=29.56 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=43.3
Q ss_pred EecCCCChHHHHHHHHHhcCcEEEEEEEEee-CCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhhc
Q 037798 618 QCGNKEGLLLDIMQMLRELLIEVTAVQSFLT-NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIPQ 684 (687)
Q Consensus 618 ~C~~reglLl~Im~aLeeL~LdV~sVqsS~~-dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~k 684 (687)
.-+.++|.|.+||..++..|+.++++.+.-. +...-+.|...+. |. ...|+++|..+-..
T Consensus 6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e----~~---~~~i~~~l~~l~~~ 66 (74)
T cd04929 6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCE----CD---QRRLDELVQLLKRE 66 (74)
T ss_pred EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE----cC---HHHHHHHHHHHHHh
Confidence 3478899999999999999999999998763 3444566666665 32 23666766655433
No 102
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.58 E-value=21 Score=29.59 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=39.8
Q ss_pred EEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeC-CEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 616 ELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTN-GVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 616 eI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~d-g~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
.|.=|.|+|-|.++++.|.+ +.+|+.++....+ +.....+..++++ ...+.+|.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~-----~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD-----REDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC-----HHHHHHHHHHHHH
Confidence 45668999999999999999 9999988776532 2222233334432 2346677777765
No 103
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=66.98 E-value=7.7 Score=40.97 Aligned_cols=53 Identities=30% Similarity=0.285 Sum_probs=44.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhccCCC---CCCCCccchHHHHHHHHHHHHHHHH
Q 037798 483 SANHVLAERRRREKLNERFIILRSLVPF---VTKMDKASILGDTIEYVKQLRKKIQ 535 (687)
Q Consensus 483 ~~~H~~~ER~RR~kin~~f~~LrsLvP~---~~K~dKaSIL~~aI~YIk~Lq~~v~ 535 (687)
+..-+..||+|-..||.-|..||.+||. ..|..|---|..|-.||--|-..+.
T Consensus 175 r~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 175 RLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 4456788999999999999999999994 4677788889999999988876553
No 104
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=65.72 E-value=42 Score=26.71 Aligned_cols=59 Identities=12% Similarity=0.195 Sum_probs=37.4
Q ss_pred EEEEEec---CCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 614 LVELQCG---NKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 614 lIeI~C~---~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
+|.|.+. ..++++.+|+++|.+.++.|..+..+..+..+.+.+.. .....+.++|++.+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~----------~~~~~~~~~lh~~~ 64 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDE----------DDATKALRAVHERF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeH----------HHHHHHHHHHHHHH
Confidence 4555553 46789999999999999999877554444344333322 12345566666554
No 105
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.95 E-value=40 Score=31.51 Aligned_cols=65 Identities=6% Similarity=0.015 Sum_probs=44.2
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee-CCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhhcc
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT-NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIPQY 685 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~-dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~k~ 685 (687)
.|-+..++++|.|.+||..+...|+.++++.|--. ....-+.|...+. |. ..+++++|..+-..|
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdie----g~---~~~~~~aL~~L~~~~ 108 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCE----VH---RSDLLQLISSLRQVA 108 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEE----eC---HHHHHHHHHHHHHhc
Confidence 34444588999999999999999999999998764 3333455556655 21 224666666554333
No 106
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=63.93 E-value=21 Score=31.82 Aligned_cols=64 Identities=14% Similarity=0.265 Sum_probs=45.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEE--eeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSF--LTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS--~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
.|.+.-..++|+|.+|-.++...|..+.|..++ ...++-..+|.+.+. ....++.|.+-|.|.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~-----d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ-----DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC-----CHHHHHHHHHHHhCCc
Confidence 567778899999999999998776665555444 467888888877542 3345666766666654
No 107
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=63.17 E-value=28 Score=30.43 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=44.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe--eCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL--TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~--~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
.|.+.-..++|+|.+|..++...|..+.+..++. ..++...+|.+.- ....++.|..-|.+.+
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~------~~~~i~qi~kQL~KLi 68 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC------TENEATLLVSQLKKLI 68 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC------CHHHHHHHHHHHhCCc
Confidence 5677888999999999999988887777766664 5677777776642 2234555655555544
No 108
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=62.69 E-value=51 Score=25.41 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=26.9
Q ss_pred EEEEEec---CCCChHHHHHHHHHhcCcEEEEEEEEe
Q 037798 614 LVELQCG---NKEGLLLDIMQMLRELLIEVTAVQSFL 647 (687)
Q Consensus 614 lIeI~C~---~reglLl~Im~aLeeL~LdV~sVqsS~ 647 (687)
+|.|.+. .+.+++.+|+++|.+.++.+..+..+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4566554 567899999999999999998876544
No 109
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=61.09 E-value=41 Score=34.19 Aligned_cols=65 Identities=9% Similarity=0.180 Sum_probs=50.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeC----C--EEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 613 ALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTN----G--VFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 613 vlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~d----g--~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
..|++.-+.|+|++.+|-++|-+.|++|...++.+.. + +|...+.+.+.. ...+.+++.+|..+-
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~-----~~~~~~L~~~l~~l~ 166 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA-----SQDAANIEQAFKALC 166 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC-----CCCHHHHHHHHHHHH
Confidence 4566778899999999999999999999988877643 2 666666666653 345888888887654
No 110
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.00 E-value=46 Score=26.71 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=26.8
Q ss_pred CCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEE
Q 037798 621 NKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQL 656 (687)
Q Consensus 621 ~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI 656 (687)
.++|++.+|+++|.+.++++..+..+..+..+.+++
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v 48 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGASEINISCVI 48 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEE
Confidence 468999999999999999998775544444444433
No 111
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=60.65 E-value=35 Score=44.76 Aligned_cols=73 Identities=11% Similarity=0.196 Sum_probs=56.9
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe-----eCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhhcc
Q 037798 611 SDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL-----TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIPQY 685 (687)
Q Consensus 611 ~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~-----~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~k~ 685 (687)
+.+.++|..+.++..|++||-+|++|||.|+.-..-. ...+.++.|...... +.......+++.+..++.+.
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~---~~~~~~~~~~~~~~~a~~~v 564 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPD---GDALDLDDIRERFEEAFEAV 564 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCC---CccccHHHHHHHHHHHHHHH
Confidence 3578999998899999999999999999999865443 234677888888764 55577888888887777654
Q ss_pred C
Q 037798 686 V 686 (687)
Q Consensus 686 ~ 686 (687)
|
T Consensus 565 ~ 565 (1528)
T PF05088_consen 565 W 565 (1528)
T ss_pred h
Confidence 3
No 112
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=59.71 E-value=28 Score=31.69 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=68.1
Q ss_pred hHHHHHHHHhhccCCceEEEEeeecCCCceEEecceeecCCcccccccCCCccChHHHHHHHHHHHHHHHHhhccCCCCC
Q 037798 8 SRLQSILQEAVQSVQWTYSLFWQICPQQGILIWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNQ 87 (687)
Q Consensus 8 ~~Lq~~L~~lv~~~~WtYAiFWq~s~~~~vL~WgDGyy~g~~~~~k~~~~~~~~~~~~~~~r~~~lreL~~sl~~g~~~~ 87 (687)
..|+..|+.+++-.+..++.++.+..+...+...-++........
T Consensus 4 ~~l~~~~~~l~~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~----------------------------------- 48 (154)
T PF01590_consen 4 ELLQRILRELAELLGADRASIFLLDPDGNRLYSVAGVGLPDPPPG----------------------------------- 48 (154)
T ss_dssp HHHHHHHHHHHHHHTESEEEEEEEETTTTEEEEEEEEEGGGSEHH-----------------------------------
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEecCCCeEEEEEeecccccccc-----------------------------------
Confidence 467888888888889999999888776554433333322211000
Q ss_pred CCCCCCccCCCCCCCccceeeeeeeeeecCCCCCccceecccCCeeEeeCCCCCCCCc------------------cccc
Q 037798 88 PTRRPSAALSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARQQHVWLTGANEVDSKT------------------FSRA 149 (687)
Q Consensus 88 ~~~~~~~als~edltd~Ewfyl~sm~~sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~------------------f~R~ 149 (687)
.+.+..+.+..|+++.+++++++.+........ |.+.
T Consensus 49 -------------------------~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (154)
T PF01590_consen 49 -------------------------GRRLSMDESICGQVLQSREPIVISDVAADPRFAPQIAAQSALRALSSAERPFLAE 103 (154)
T ss_dssp -------------------------HEEEETTSSHHHHHHHHTSCEEESSSGGSTTSSCHHHHHHTTBTTTHHHHHHHHT
T ss_pred -------------------------cccccccccHHHHHHhCCCeEeecccccccccccccccccccccccccccccccc
Confidence 012233566789999999999988775433211 1113
Q ss_pred cCCCeEEEEeeCC-----cEEEeccccc
Q 037798 150 ILAKTVVCIPFLD-----GVVELGTTEK 172 (687)
Q Consensus 150 ~lAkTvvciP~~~-----GVvELGSte~ 172 (687)
.-.++++|+|+.. |||.|..+..
T Consensus 104 ~~~~s~l~vPi~~~g~~~G~l~l~~~~~ 131 (154)
T PF01590_consen 104 YGVRSYLCVPIISGGRLIGVLSLYRTRP 131 (154)
T ss_dssp TTESEEEEEEEEETTEEEEEEEEEEESS
T ss_pred ccCceeeEeeeecccCcEEEEEEEECCC
Confidence 3335999999865 9999998887
No 113
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=57.85 E-value=1.2e+02 Score=25.81 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=21.9
Q ss_pred hHHHHHHHHhhccCCceEEEEeeecC
Q 037798 8 SRLQSILQEAVQSVQWTYSLFWQICP 33 (687)
Q Consensus 8 ~~Lq~~L~~lv~~~~WtYAiFWq~s~ 33 (687)
..++..++.+++-.++.++.+|.+..
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~i~~~~~ 29 (149)
T smart00065 4 ELLQTILEELRQLLGADRVLIYLVDE 29 (149)
T ss_pred HHHHHHHHHHHHHhCCceEEEEEEec
Confidence 45777888888888999999999887
No 114
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=57.80 E-value=39 Score=34.03 Aligned_cols=64 Identities=9% Similarity=0.232 Sum_probs=47.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe--eCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL--TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~--~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
.|.+.-..++|+|.+|...|...|+++.+.++.. ..+.-..+|. +.. +... ++.|.+.|.+++.
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIv--v~~---~~~~-ieqL~kQL~KLid 69 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMV--VPG---DDRT-IEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEE--EEC---CHHH-HHHHHHHHHHHhH
Confidence 5778888999999999999999999998888765 4555544444 331 1222 7889999988764
No 115
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=56.08 E-value=53 Score=36.31 Aligned_cols=66 Identities=11% Similarity=0.225 Sum_probs=48.6
Q ss_pred cCeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe-----eCCEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 610 ESDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL-----TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 610 e~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~-----~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
+..+.|.|.=+.++|.|.+|++.|.+.+.+|+++.... ..+....+|+.+++. .....+|.++|.+
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~-----~~~~~~i~~~L~~ 373 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG-----KEHLDEILKILRD 373 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC-----HHHHHHHHHHHHH
Confidence 44568888889999999999999999999999986552 235556666666641 2335677777765
No 116
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.93 E-value=80 Score=25.06 Aligned_cols=59 Identities=12% Similarity=0.068 Sum_probs=37.1
Q ss_pred EEEEEec---CCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 614 LVELQCG---NKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 614 lIeI~C~---~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
+|.|.+. .+++++.+|+++|.+.++++..+..+..+..+.+++.. .......++|++.+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~----------~d~~~~~~~lh~~~ 64 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHN----------EDADKAVKAIYEEF 64 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeH----------HHHHHHHHHHHHHH
Confidence 3444443 56889999999999999999777554433333333321 22455666777654
No 117
>PRK06382 threonine dehydratase; Provisional
Probab=55.66 E-value=50 Score=37.09 Aligned_cols=66 Identities=11% Similarity=0.113 Sum_probs=47.8
Q ss_pred cCeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEE-----eeCCEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 610 ESDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSF-----LTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 610 e~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS-----~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
+..+.|.|.-+.++|.|.+|.+.|.+.+.+|+++... ...+...++|+.+.++ .-....|+++|.+
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~-----~~~~~~v~~~L~~ 398 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG-----QDHLDRILNALRE 398 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC-----HHHHHHHHHHHHH
Confidence 3456788888999999999999999999999988764 2345556667776651 1124467777655
No 118
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=53.97 E-value=59 Score=28.52 Aligned_cols=37 Identities=14% Similarity=0.085 Sum_probs=25.9
Q ss_pred hHHHHHHHHhhccCCceEEEEeeecCCCceEEeccee
Q 037798 8 SRLQSILQEAVQSVQWTYSLFWQICPQQGILIWGDGY 44 (687)
Q Consensus 8 ~~Lq~~L~~lv~~~~WtYAiFWq~s~~~~vL~WgDGy 44 (687)
.-+++.++.+++..+...+.+|.+......+..--++
T Consensus 4 ~l~~~i~~~l~~~~~~~~~~l~~~d~~~~~~~~~~~~ 40 (129)
T PF13492_consen 4 ELLERILELLRELLGADRAALFLLDEDGNRLRVVAGW 40 (129)
T ss_dssp HHHHHHHHHHHHHST-SEEEEEEEETTCECEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEEe
Confidence 4577788888888999999999998765444443333
No 119
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.64 E-value=1e+02 Score=26.43 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=27.8
Q ss_pred ecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEE
Q 037798 619 CGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLR 657 (687)
Q Consensus 619 C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~ 657 (687)
.+.++|.+.+|+++|.+.++.|-.+..+ ...+.+++.
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s--~~~iSftv~ 47 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITTS--EISVALTLD 47 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEeec--CCEEEEEEe
Confidence 3567899999999999999999887543 344555554
No 120
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=52.52 E-value=54 Score=24.66 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHHhcCcEEEEEEEEee
Q 037798 622 KEGLLLDIMQMLRELLIEVTAVQSFLT 648 (687)
Q Consensus 622 reglLl~Im~aLeeL~LdV~sVqsS~~ 648 (687)
..|.+.+|+++|.+.++.+..+..+..
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~~ 39 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSES 39 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 678999999999999999987765543
No 121
>PRK08198 threonine dehydratase; Provisional
Probab=51.67 E-value=69 Score=35.79 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=47.4
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe-----eCCEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 611 SDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL-----TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 611 ~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~-----~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
..+.+.|.=+.++|.|.++++.|.+.|..|+.+.... ..+...++|..+++. .....+|.++|.+
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~-----~~~~~~l~~~L~~ 395 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRG-----PEHIEEILDALRD 395 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCC-----HHHHHHHHHHHHH
Confidence 4557778889999999999999999999999887763 245566666666541 1245677777654
No 122
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=50.71 E-value=71 Score=38.75 Aligned_cols=51 Identities=27% Similarity=0.346 Sum_probs=44.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee-CCEEEEEEEEEEcc
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT-NGVFTAQLRAKVKD 662 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~-dg~l~~tI~aKv~e 662 (687)
.+-|.|.-.+|+|+|.+|+++|.+.+..|++|++... ++++...|...|..
T Consensus 627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n 678 (701)
T COG0317 627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKN 678 (701)
T ss_pred EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECc
Confidence 3578888899999999999999999999999998884 67777788888874
No 123
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.98 E-value=76 Score=27.56 Aligned_cols=61 Identities=10% Similarity=0.201 Sum_probs=37.9
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe---eCCEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL---TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~---~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
+.++.|.=|.++|-|.+++++|- +.+|..+.... ..+.+.+.| ++++ ..-....+.++|.+
T Consensus 1 e~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~i--e~~~----~~~~~~~i~~~L~~ 64 (85)
T cd04906 1 EALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGV--SVAN----GAEELAELLEDLKS 64 (85)
T ss_pred CeEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEE--EeCC----cHHHHHHHHHHHHH
Confidence 35678888999999999999998 55666555543 233333333 4331 12335566666654
No 124
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=47.69 E-value=1.1e+02 Score=37.33 Aligned_cols=63 Identities=11% Similarity=0.167 Sum_probs=53.9
Q ss_pred EEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 617 LQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 617 I~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
+-||.+.|+|.++.-+|--.++.|+++.+.+ +|.....|.+.-.- |....+..+.|++...+.
T Consensus 552 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~---~~~~~~~~~~~~~~~~~~ 614 (693)
T PRK00227 552 IWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANG---PQDFDPQEFLQAYKSGVY 614 (693)
T ss_pred EecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCC---CCCCChHHHHHHHHHhhc
Confidence 4559999999999999999999999999999 88888887776542 688889999999887764
No 125
>PRK11899 prephenate dehydratase; Provisional
Probab=47.68 E-value=1e+02 Score=33.15 Aligned_cols=68 Identities=13% Similarity=0.155 Sum_probs=49.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee-CCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhhcc
Q 037798 613 ALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT-NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIPQY 685 (687)
Q Consensus 613 vlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~-dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~k~ 685 (687)
..|-+..+.++|.|.+||+.+...|+..+...|--. ++..-|.|...+. |. ..-..+++||..+-..+
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~e----g~-~~d~~v~~aL~~l~~~~ 263 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIE----GH-PEDRNVALALEELRFFS 263 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEE----CC-CCCHHHHHHHHHHHHhc
Confidence 344455578999999999999999999999998854 5666777777777 32 22335677776664443
No 126
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.59 E-value=1.3e+02 Score=23.73 Aligned_cols=59 Identities=10% Similarity=0.049 Sum_probs=36.9
Q ss_pred EEEEEec---CCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 614 LVELQCG---NKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 614 lIeI~C~---~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
+|.|.+. ..++++.+|+++|.+.++.+.-+..+..+..+.+++.. . ....+.+.|++.+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~--~--------~~~~~~~~Lh~~~ 64 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAE--D--------DGWAAVKAVHDEF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeH--H--------HHHHHHHHHHHHh
Confidence 3444443 46789999999999999999766544433333333322 2 2456666777655
No 127
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=44.73 E-value=88 Score=28.68 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=42.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEE--EEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQ--SFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVq--sS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
...|.+.-..++|+|.+|.-.+..-|..+.|.. -+...++-..+|.+. .+ ..++.|.+-|.|++
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~------~~i~Qi~kQL~KLi 73 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DD------QRLEQMISQIEKLE 73 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-Cc------hHHHHHHHHHhCCc
Confidence 356778888999999999999976666555544 444566666666543 21 34666666666554
No 128
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=44.61 E-value=1.1e+02 Score=32.98 Aligned_cols=68 Identities=16% Similarity=0.307 Sum_probs=51.6
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee--CCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT--NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~--dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
...+.+.||.++|+...|-..|-+.|..++..+-... .|+|+. ++.+.. .+...+.+.+.+++..+..
T Consensus 7 ~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFm--R~~f~~--~~~~~~~~~l~~~f~~~a~ 76 (287)
T COG0788 7 TFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFM--RVEFEG--EGGPLDREALRAAFAPLAE 76 (287)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEE--EEEEec--CCCcccHHHHHHHHHHHHH
Confidence 4578899999999999999999999999997766642 455554 555542 1345788888888877554
No 129
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=43.66 E-value=1.1e+02 Score=24.85 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=19.6
Q ss_pred CCCChHHHHHHHHHhcCcEEE
Q 037798 621 NKEGLLLDIMQMLRELLIEVT 641 (687)
Q Consensus 621 ~reglLl~Im~aLeeL~LdV~ 641 (687)
..+|++.+++++|.+.++.+.
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEE
Confidence 578999999999999999996
No 130
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=41.36 E-value=78 Score=25.23 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=27.2
Q ss_pred CCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEE
Q 037798 621 NKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRA 658 (687)
Q Consensus 621 ~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~a 658 (687)
.+.|.+.+|+++|.+.++.|..+.. ....+.+++..
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t--~~~~is~~v~~ 47 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT--SENSVTLYLDD 47 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec--CCCEEEEEEeh
Confidence 5678999999999999999998843 33445555543
No 131
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=41.08 E-value=1.3e+02 Score=37.23 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=48.1
Q ss_pred eEEEEEEcCeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe-eCCEEEEEEEEEE
Q 037798 603 SVQVSIIESDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL-TNGVFTAQLRAKV 660 (687)
Q Consensus 603 ~V~Vsi~e~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~-~dg~l~~tI~aKv 660 (687)
.+.++...+..-|-|.|+.++.++..|.-++...|++|+.+|+-+ .||..+-+|...-
T Consensus 675 ~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~ 733 (867)
T COG2844 675 LISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLE 733 (867)
T ss_pred eeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEec
Confidence 344455556678889999999999999999999999999999986 6898888776653
No 132
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.25 E-value=84 Score=25.72 Aligned_cols=52 Identities=8% Similarity=0.032 Sum_probs=35.1
Q ss_pred CCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 621 NKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 621 ~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
+.+|++.+++++|.+.++.|.-+..++.+-.+.+.+..+ ......++|++.+
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~~----------~~~~av~~Lh~~f 63 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVNISLIVNDS----------EAEGCVQALHKSF 63 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHH----------HHHHHHHHHHHHH
Confidence 356899999999999999998777666555554444332 1345556666544
No 133
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.40 E-value=2e+02 Score=22.24 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=22.1
Q ss_pred CCCChHHHHHHHHHhcCcEEEEEEEE
Q 037798 621 NKEGLLLDIMQMLRELLIEVTAVQSF 646 (687)
Q Consensus 621 ~reglLl~Im~aLeeL~LdV~sVqsS 646 (687)
..++++.+|+++|.+.++.+..+..+
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMISTS 37 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEcc
Confidence 45789999999999999999877643
No 134
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=35.66 E-value=1.2e+02 Score=25.90 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=35.8
Q ss_pred CceEEEEEEcCeEEEEEEecCCCC------hHHHHHHHHHhcCcEEEEEEEEee
Q 037798 601 ATSVQVSIIESDALVELQCGNKEG------LLLDIMQMLRELLIEVTAVQSFLT 648 (687)
Q Consensus 601 ~~~V~Vsi~e~dvlIeI~C~~reg------lLl~Im~aLeeL~LdV~sVqsS~~ 648 (687)
...|++++.++.+.|.|.+...+- -+-.+-++|...|+.+..++++..
T Consensus 26 ~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 26 SVEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp -EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred cEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 467888888999999999986542 377788899999999998877654
No 135
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=35.06 E-value=2.1e+02 Score=22.11 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=22.3
Q ss_pred CCCChHHHHHHHHHhcCcEEEEEEEE
Q 037798 621 NKEGLLLDIMQMLRELLIEVTAVQSF 646 (687)
Q Consensus 621 ~reglLl~Im~aLeeL~LdV~sVqsS 646 (687)
..++++.+|+++|.+.++.+..+..+
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMISTS 37 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcc
Confidence 46789999999999999999887644
No 136
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.78 E-value=1.5e+02 Score=25.38 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=36.1
Q ss_pred cCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcc-cCHHHHHHHHHH
Q 037798 620 GNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKK-ASIVEVKRAINQ 680 (687)
Q Consensus 620 ~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~-~s~~eIkqAL~~ 680 (687)
+..+|++.+|+++|.+.++.|-.+.. ....+.+++...-. |-. -.+.+|.+.|++
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~--s~~~isftv~~~~~----~~~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST--SETNVTVSLDPDPN----GLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEeCccc----ccchHHHHHHHHHHHh
Confidence 45789999999999999999988854 33455555544321 101 135566666665
No 137
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=33.66 E-value=1.9e+02 Score=23.04 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=23.2
Q ss_pred ecCCCChHHHHHHHHHhcCcEEEEEEEE
Q 037798 619 CGNKEGLLLDIMQMLRELLIEVTAVQSF 646 (687)
Q Consensus 619 C~~reglLl~Im~aLeeL~LdV~sVqsS 646 (687)
.+.++|.+.+|+++|.+.++.+..+..+
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 3678899999999999999999766443
No 138
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.55 E-value=2.8e+02 Score=24.14 Aligned_cols=43 Identities=16% Similarity=0.327 Sum_probs=30.4
Q ss_pred EEEEEe---cCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEE
Q 037798 614 LVELQC---GNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRA 658 (687)
Q Consensus 614 lIeI~C---~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~a 658 (687)
+|.|.. +..+|.+.+|+++|.+.|+.|-.+.. ....+.+++..
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q--s~~sISftV~~ 48 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT--SEVSISLTLDP 48 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--cCCEEEEEEEh
Confidence 444443 45789999999999999999988754 33445555543
No 139
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=31.24 E-value=1.9e+02 Score=24.29 Aligned_cols=43 Identities=12% Similarity=0.286 Sum_probs=30.5
Q ss_pred EEEEEe---cCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEE
Q 037798 614 LVELQC---GNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRA 658 (687)
Q Consensus 614 lIeI~C---~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~a 658 (687)
+|.|.+ +..+|++.+|+++|.+.++.|..+.. .+..+.+.+..
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~--s~~~is~~v~~ 48 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST--SEVSVSLTLDP 48 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc--CCcEEEEEEEc
Confidence 445533 35689999999999999999987753 33555555544
No 140
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=30.49 E-value=1.3e+02 Score=24.84 Aligned_cols=32 Identities=25% Similarity=0.168 Sum_probs=25.0
Q ss_pred CCChHHHHHHHHHhcCcEEEEEEEEeeCCEEE
Q 037798 622 KEGLLLDIMQMLRELLIEVTAVQSFLTNGVFT 653 (687)
Q Consensus 622 reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~ 653 (687)
++|++.+++++|.+.++++..+..+..+-.+.
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is 45 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRNVDVQ 45 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCeeEEE
Confidence 56899999999999999998776655443433
No 141
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=29.90 E-value=1.8e+02 Score=24.16 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=26.8
Q ss_pred EEEEEe---cCCCChHHHHHHHHHhcCcEEEEEEEEeeC
Q 037798 614 LVELQC---GNKEGLLLDIMQMLRELLIEVTAVQSFLTN 649 (687)
Q Consensus 614 lIeI~C---~~reglLl~Im~aLeeL~LdV~sVqsS~~d 649 (687)
+|.|.. ....+++.+|+++|.+.++.+..+..+..+
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~ 41 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQASSE 41 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 455533 356789999999999999999877655443
No 142
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=29.54 E-value=2.9e+02 Score=23.52 Aligned_cols=59 Identities=10% Similarity=0.290 Sum_probs=37.8
Q ss_pred EEEEEec---CCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEE-EccccCCcccCHHHHHHHHHH
Q 037798 614 LVELQCG---NKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAK-VKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 614 lIeI~C~---~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aK-v~en~~G~~~s~~eIkqAL~~ 680 (687)
+|.|.+. ..+|.+.+|+++|.+.++.|-.+.. ....+.+++... +. + -.+.+|.+.|++
T Consensus 3 ~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~--s~~~isftv~~~~~~----~--~~l~~l~~el~~ 65 (73)
T cd04934 3 VINIHSNKKSLSHGFLARIFAILDKYRLSVDLIST--SEVHVSMALHMENAE----D--TNLDAAVKDLQK 65 (73)
T ss_pred EEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEehhhcC----h--HHHHHHHHHHHH
Confidence 3455444 3679999999999999999988754 334455555432 11 0 135566666666
No 143
>PF13063 DUF3925: Protein of unknown function (DUF3925)
Probab=29.03 E-value=11 Score=31.04 Aligned_cols=52 Identities=27% Similarity=0.591 Sum_probs=39.2
Q ss_pred CCCCccceeeeeeeeeecCCCCCccceecccCCeeEeeCCCCC-CCCccccccCCCeEEEEeeCCcEEEec
Q 037798 99 EDLTESEWFYLMCVSFSFPSGVGLPGKAYARQQHVWLTGANEV-DSKTFSRAILAKTVVCIPFLDGVVELG 168 (687)
Q Consensus 99 edltd~Ewfyl~sm~~sF~~G~GlpG~a~~~g~~~Wl~~~~~~-~~~~f~R~~lAkTvvciP~~~GVvELG 168 (687)
|-+++-|.||...|.--|..| |+-+.+.+ -+++|+-+- .+..|+.+|+|-|-
T Consensus 7 e~isnrefyfvlymmll~v~g--------------w~idvnglfls~yf~lag----~i~lplvggivg~f 59 (66)
T PF13063_consen 7 EMISNREFYFVLYMMLLFVAG--------------WVIDVNGLFLSKYFSLAG----MIMLPLVGGIVGFF 59 (66)
T ss_pred hhhcccchHHHHHHHHHHHhh--------------heEecchhhHHHHhhhcc----eEeeeeccceEEEE
Confidence 456677889988888788554 88888754 477887654 77899999998663
No 144
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=29.01 E-value=14 Score=44.04 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=50.6
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhccCCC-----CCCCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 037798 481 EMSANHVLAERRRREKLNERFIILRSLVPF-----VTKMDKASILGDTIEYVKQLRKKIQDLESRN 541 (687)
Q Consensus 481 ~~~~~H~~~ER~RR~kin~~f~~LrsLvP~-----~~K~dKaSIL~~aI~YIk~Lq~~v~~Le~~~ 541 (687)
...+.|..+|.+||..+.-.|..|.+++-+ ..|+.++.-+..++.||..++.+...+.++-
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~ 715 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEA 715 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhh
Confidence 457899999999999999999999999874 3577777889999999999888766655443
No 145
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=28.94 E-value=2.6e+02 Score=31.56 Aligned_cols=64 Identities=16% Similarity=0.264 Sum_probs=47.2
Q ss_pred EEecCCCChHHHHHHHHHhcCcEEEEEEEEe-eCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhhcc
Q 037798 617 LQCGNKEGLLLDIMQMLRELLIEVTAVQSFL-TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIPQY 685 (687)
Q Consensus 617 I~C~~reglLl~Im~aLeeL~LdV~sVqsS~-~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~k~ 685 (687)
+.-++++|.|.+|++.|...|+..+...|-- .++..-|.|...+. |. ..-..+++||..+-..|
T Consensus 302 ~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~e----g~-~~d~~~~~aL~~l~~~~ 366 (386)
T PRK10622 302 MATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQ----AN-LRSAEMQKALKELGEIT 366 (386)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEe----CC-CCCHHHHHHHHHHHHhc
Confidence 3336899999999999999999999999884 56667777777776 32 22235677777665443
No 146
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=28.05 E-value=2.9e+02 Score=24.71 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=46.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee--CCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT--NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~--dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
.+.|.-..+|+.|.+|+.+.+--|+-|..++.|.. .|..-+.|..+- .-+++.+..-|.|+.
T Consensus 5 qldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s-------~R~~~lL~~QLeKl~ 68 (86)
T COG3978 5 QLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS-------DRSVDLLTSQLEKLY 68 (86)
T ss_pred EEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC-------CCChHHHHHHHHHHc
Confidence 45667788999999999999999999999999986 566555554432 245666766666654
No 147
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.54 E-value=2.8e+02 Score=22.58 Aligned_cols=26 Identities=4% Similarity=-0.033 Sum_probs=20.6
Q ss_pred CCCChHHHHHHHHHhcCcEEEEEEEE
Q 037798 621 NKEGLLLDIMQMLRELLIEVTAVQSF 646 (687)
Q Consensus 621 ~reglLl~Im~aLeeL~LdV~sVqsS 646 (687)
..+|++.+++++|.+.++.+++...|
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~~~s 37 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQAAN 37 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEEeCC
Confidence 57899999999999988777654433
No 148
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=25.73 E-value=1e+02 Score=25.53 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=26.5
Q ss_pred EEEEEEec----CCCChHHHHHHHHHhcCcEEEEEE
Q 037798 613 ALVELQCG----NKEGLLLDIMQMLRELLIEVTAVQ 644 (687)
Q Consensus 613 vlIeI~C~----~reglLl~Im~aLeeL~LdV~sVq 644 (687)
..|.|.++ ..+|++.+|+.+|.+-|+.|..+.
T Consensus 7 ~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 7 AKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 46777777 378999999999999999998776
No 149
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=25.63 E-value=69 Score=23.62 Aligned_cols=17 Identities=47% Similarity=0.706 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhc
Q 037798 490 ERRRREKLNERFIILRS 506 (687)
Q Consensus 490 ER~RR~kin~~f~~Lrs 506 (687)
=|+||+.|+.++..||+
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 38899999999999885
No 150
>PRK08526 threonine dehydratase; Provisional
Probab=25.52 E-value=2.8e+02 Score=31.36 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=46.8
Q ss_pred cCeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeC-----CEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 610 ESDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTN-----GVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 610 e~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~d-----g~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
+..+.+.+.-|.++|-|.++++.|-+.+.+|+.+...... +.....+..++++ .-...+|.++|++
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~-----~~~~~~~~~~l~~ 394 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKG-----KEHQEEIRKILTE 394 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCC-----HHHHHHHHHHHHH
Confidence 3456788889999999999999999999999988875522 3344445555542 2335666666654
No 151
>PRK11898 prephenate dehydratase; Provisional
Probab=24.64 E-value=3.3e+02 Score=29.33 Aligned_cols=68 Identities=22% Similarity=0.138 Sum_probs=44.5
Q ss_pred EEEEEEecC-CCChHHHHHHHHHhcCcEEEEEEEEee-CCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhhcc
Q 037798 613 ALVELQCGN-KEGLLLDIMQMLRELLIEVTAVQSFLT-NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIPQY 685 (687)
Q Consensus 613 vlIeI~C~~-reglLl~Im~aLeeL~LdV~sVqsS~~-dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~k~ 685 (687)
..|-+..+. ++|.|.++|+.+...|+.++++.|.-. +...-+.|...+. |. ..-..++++|..+-..|
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~e----g~-~~~~~~~~al~~L~~~~ 266 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVE----GH-IDDVLVAEALKELEALG 266 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEE----cc-CCCHHHHHHHHHHHHhc
Confidence 344456655 599999999999999999999998864 3334455556655 22 22234566665554333
No 152
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=24.01 E-value=2.6e+02 Score=24.13 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=34.8
Q ss_pred CCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 622 KEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 622 reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
..|...+||++|.++++.+++. .++-+.+.+-|....+ ....+.++|.+.++
T Consensus 14 ~~g~d~~i~~~l~~~~v~ii~K--~~nANtit~yl~~~~k--------~~~r~~~~Le~~~p 65 (71)
T cd04910 14 EVGYDLEILELLQRFKVSIIAK--DTNANTITHYLAGSLK--------TIKRLTEDLENRFP 65 (71)
T ss_pred ChhHHHHHHHHHHHcCCeEEEE--ecCCCeEEEEEEcCHH--------HHHHHHHHHHHhCc
Confidence 4578999999999999999988 3444444554433322 25566666666554
No 153
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=23.46 E-value=1e+02 Score=35.61 Aligned_cols=73 Identities=10% Similarity=0.128 Sum_probs=47.7
Q ss_pred ecCCCCC-ccceecccCCeeEeeCCCCCCCCcccc---ccCC----CeEEEEeeCC-----cEEEeccccc---ccCCHH
Q 037798 115 SFPSGVG-LPGKAYARQQHVWLTGANEVDSKTFSR---AILA----KTVVCIPFLD-----GVVELGTTEK---VPEDLA 178 (687)
Q Consensus 115 sF~~G~G-lpG~a~~~g~~~Wl~~~~~~~~~~f~R---~~lA----kTvvciP~~~-----GVvELGSte~---V~Ed~~ 178 (687)
.|..|+| ..|.++.+|.++.+.+...++. .+.| .... +.++|||+.. |||.+-+... -.+|..
T Consensus 65 ~~~~geGP~l~av~~~g~~v~v~~~~~~p~-~~~~~~~~~~~~~gi~S~l~vPL~~~~~~~GvL~l~~~~~~~f~~~~~~ 143 (509)
T PRK05022 65 RFALEEHPRLEAILRAGDPVRFPADSELPD-PYDGLIPGVQESLPVHDCMGLPLFVDGRLIGALTLDALDPGQFDAFSDE 143 (509)
T ss_pred ccCCCcchHHHHHHhcCCeEEEecCCCCCc-ccccccccccccCCcceEEEEEEEECCEEEEEEEEeeCCCCcCCHHHHH
Confidence 5677999 6799988899998886544332 1211 1111 2789999854 9999987653 445566
Q ss_pred HHHHHHHHhh
Q 037798 179 LVQHVKSLFI 188 (687)
Q Consensus 179 lv~~ik~~F~ 188 (687)
++..+-..+.
T Consensus 144 ~l~~~a~~~a 153 (509)
T PRK05022 144 ELRALAALAA 153 (509)
T ss_pred HHHHHHHHHH
Confidence 7766665554
No 154
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=23.30 E-value=65 Score=31.92 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCC--CCCccchHHHHHHHHHHHH
Q 037798 489 AERRRREKLNERFIILRSLVPFVT--KMDKASILGDTIEYVKQLR 531 (687)
Q Consensus 489 ~ER~RR~kin~~f~~LrsLvP~~~--K~dKaSIL~~aI~YIk~Lq 531 (687)
.||.|-.++|+.+.-|+.|+|... ++.+.=-|.-+-+||.+|.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~d 73 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLD 73 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHH
Confidence 588888999999999999999542 2222111444444554443
No 155
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=22.20 E-value=4.7e+02 Score=28.43 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=47.6
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee-CCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 613 ALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT-NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 613 vlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~-dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
..|-+.-+.++|.|.++|..|...|++.....|--. .+...+-|...+. |..-+ ..|++||..+=.
T Consensus 195 Tsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~e----g~~~~-~~v~~AL~el~~ 261 (279)
T COG0077 195 TSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIE----GHIDD-PLVKEALEELKE 261 (279)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEe----cCcCc-HhHHHHHHHHHh
Confidence 344555569999999999999999999999988754 4555566677776 32222 667777766543
No 156
>COG3976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.58 E-value=1.9e+02 Score=27.87 Aligned_cols=73 Identities=14% Similarity=0.067 Sum_probs=50.2
Q ss_pred CCceEEEEEEcCeE-EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHH
Q 037798 600 VATSVQVSIIESDA-LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAI 678 (687)
Q Consensus 600 ~~~~V~Vsi~e~dv-lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL 678 (687)
...+|+|.|.++.+ -|++.--..+--. -=++++-+.-+++.+||+-+|-+- |...+-.-|-++|
T Consensus 62 g~lqv~vtIk~grItaikvl~h~~d~~~--~~~a~evvp~eivkAQStdVD~iS-------------gAT~tS~aiI~sv 126 (135)
T COG3976 62 GILQVQVTIKGGRITAIKVLKHPSDRRT--NRQALEVVPDEIVKAQSTDVDIIS-------------GATLTSRAIIQSV 126 (135)
T ss_pred ceEEEEEEEecCcEEEEEEecCCCCcch--hhhhcccccHHHhhccccccceee-------------ccccchHHHHHHH
Confidence 44688899998887 6888655322222 345667777788999988777543 5556666778888
Q ss_pred HHHhhccCC
Q 037798 679 NQIIPQYVN 687 (687)
Q Consensus 679 ~~ii~k~~~ 687 (687)
++++.|..|
T Consensus 127 ekaLek~~~ 135 (135)
T COG3976 127 EKALEKASS 135 (135)
T ss_pred HHHHhccCC
Confidence 888877643
No 157
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=21.01 E-value=1.3e+02 Score=36.26 Aligned_cols=70 Identities=16% Similarity=0.332 Sum_probs=42.7
Q ss_pred cCCCCCccceecccCCeeEeeCCCCCCCCccccc------cCCCeEEEEeeCC-----cEEEecccccc---cCCHHHHH
Q 037798 116 FPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRA------ILAKTVVCIPFLD-----GVVELGTTEKV---PEDLALVQ 181 (687)
Q Consensus 116 F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f~R~------~lAkTvvciP~~~-----GVvELGSte~V---~Ed~~lv~ 181 (687)
.+.+.|+.|+++.+|+++=+.++..-....+.+. .-.++++|||+.. |||.+++...- .+|..+++
T Consensus 252 ~~~~~~l~g~V~~~~~p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~v~GvL~l~~~~~~~F~~~dl~lL~ 331 (686)
T PRK15429 252 VDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLKLLR 331 (686)
T ss_pred CCcccchHHHHHhcCceEEEECccCcccchhhhhhhhcccccceEEEEEeEEECCEEEEEEEEeeCCCCcCCHHHHHHHH
Confidence 3345689999999999997754432111111111 1135889999865 99999865432 24555555
Q ss_pred HHHH
Q 037798 182 HVKS 185 (687)
Q Consensus 182 ~ik~ 185 (687)
.|-.
T Consensus 332 ~iA~ 335 (686)
T PRK15429 332 QIAE 335 (686)
T ss_pred HHHH
Confidence 4443
Done!