Query 037798
Match_columns 687
No_of_seqs 328 out of 1337
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 07:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.5 2.5E-14 8.6E-19 123.5 5.8 60 482-541 6-66 (82)
2 4h10_B Circadian locomoter out 99.4 5.7E-13 2E-17 111.8 5.8 57 482-538 8-65 (71)
3 1hlo_A Protein (transcription 99.3 7.9E-13 2.7E-17 113.5 6.2 61 481-541 11-73 (80)
4 1nkp_B MAX protein, MYC proto- 99.3 1E-12 3.5E-17 113.4 6.9 60 482-541 2-63 (83)
5 4ati_A MITF, microphthalmia-as 99.3 1.5E-12 5.2E-17 119.6 6.6 60 482-541 27-90 (118)
6 1nkp_A C-MYC, MYC proto-oncoge 99.3 1.7E-12 5.7E-17 113.6 6.4 60 482-541 6-68 (88)
7 1an4_A Protein (upstream stimu 99.3 5E-13 1.7E-17 110.2 2.6 52 483-534 6-63 (65)
8 1a0a_A BHLH, protein (phosphat 99.3 3.4E-13 1.2E-17 110.9 0.7 52 483-534 3-61 (63)
9 4h10_A ARYL hydrocarbon recept 99.2 1.7E-12 5.8E-17 109.7 2.6 51 482-532 9-63 (73)
10 1nlw_A MAD protein, MAX dimeri 99.2 1.5E-11 5.3E-16 105.6 7.4 59 483-541 2-63 (80)
11 3u5v_A Protein MAX, transcript 99.2 1.2E-11 4E-16 105.4 3.5 59 481-539 4-66 (76)
12 1mdy_A Protein (MYOD BHLH doma 98.9 1.2E-09 4.2E-14 91.0 4.2 54 481-534 11-66 (68)
13 2ql2_B Neurod1, neurogenic dif 98.8 3.5E-09 1.2E-13 86.2 5.2 53 483-535 3-58 (60)
14 4f3l_A Mclock, circadian locom 98.6 2.3E-08 7.9E-13 106.9 4.9 52 482-533 12-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.4 9.4E-08 3.2E-12 103.4 4.8 52 482-533 13-68 (387)
16 2lfh_A DNA-binding protein inh 98.2 2.6E-07 8.8E-12 76.6 1.0 44 489-532 21-67 (68)
17 4ath_A MITF, microphthalmia-as 98.1 2.6E-06 8.9E-11 73.2 4.5 48 494-541 4-55 (83)
18 4aya_A DNA-binding protein inh 97.5 8.3E-05 2.8E-09 65.8 5.3 48 489-536 32-82 (97)
19 1zpv_A ACT domain protein; str 97.0 0.0074 2.5E-07 51.1 11.3 67 612-683 5-71 (91)
20 3e0y_A Conserved domain protei 95.1 0.043 1.5E-06 49.8 7.3 72 115-186 77-159 (181)
21 1u8s_A Glycine cleavage system 95.1 0.081 2.8E-06 51.1 9.7 66 612-683 6-71 (192)
22 3mmh_A FRMSR, methionine-R-sul 94.9 0.056 1.9E-06 51.8 7.5 73 115-188 77-157 (167)
23 1vhm_A Protein YEBR; structura 94.8 0.07 2.4E-06 52.5 8.3 74 115-189 88-169 (195)
24 2ko1_A CTR148A, GTP pyrophosph 94.6 0.21 7.2E-06 41.4 9.7 50 612-661 5-54 (88)
25 3trc_A Phosphoenolpyruvate-pro 94.6 0.11 3.8E-06 46.6 8.4 118 8-185 25-153 (171)
26 2nyi_A Unknown protein; protei 94.5 0.1 3.4E-06 51.0 8.6 69 612-682 5-73 (195)
27 2nyi_A Unknown protein; protei 94.3 0.15 5.2E-06 49.7 9.3 67 612-684 93-165 (195)
28 3dba_A CONE CGMP-specific 3',5 94.0 0.022 7.5E-07 53.9 2.6 71 115-187 82-167 (180)
29 2e4s_A CAMP and CAMP-inhibited 93.9 0.09 3.1E-06 48.3 6.5 70 115-186 85-169 (189)
30 3rfb_A Putative uncharacterize 93.9 0.029 9.9E-07 54.3 3.2 74 115-190 77-159 (171)
31 3oov_A Methyl-accepting chemot 93.8 0.16 5.3E-06 45.5 7.8 121 8-186 19-155 (169)
32 1f5m_A GAF; CGMP binding, sign 93.7 0.044 1.5E-06 52.8 4.0 74 114-188 92-174 (180)
33 3ci6_A Phosphoenolpyruvate-pro 93.6 0.14 4.7E-06 45.4 6.9 72 115-186 74-156 (171)
34 3ksh_A Putative uncharacterize 93.5 0.027 9.3E-07 53.9 2.2 73 115-188 76-156 (160)
35 1u8s_A Glycine cleavage system 93.2 0.42 1.4E-05 46.0 10.1 68 612-684 93-168 (192)
36 2zmf_A CAMP and CAMP-inhibited 92.0 0.1 3.5E-06 47.7 3.8 71 115-185 85-168 (189)
37 3k2n_A Sigma-54-dependent tran 90.8 2.5 8.6E-05 38.0 11.9 118 8-185 23-158 (177)
38 3obi_A Formyltetrahydrofolate 89.6 1.8 6.1E-05 45.1 10.9 69 611-683 5-75 (288)
39 3p96_A Phosphoserine phosphata 89.2 0.83 2.8E-05 48.9 8.3 67 612-682 12-78 (415)
40 2vjw_A GAF-B, GAF family prote 89.2 0.24 8.4E-06 45.5 3.6 48 115-170 55-107 (149)
41 2jhe_A Transcription regulator 88.5 0.93 3.2E-05 41.9 7.2 39 614-653 2-40 (190)
42 3n0v_A Formyltetrahydrofolate 88.5 2.3 7.7E-05 44.2 10.7 68 611-683 7-76 (286)
43 3o1l_A Formyltetrahydrofolate 88.5 2.2 7.5E-05 44.8 10.6 68 612-683 22-91 (302)
44 1ykd_A Adenylate cyclase; GAF 87.7 1.1 3.7E-05 46.9 7.9 57 115-171 262-331 (398)
45 2w3g_A DOSS, two component sen 86.2 0.73 2.5E-05 40.2 4.7 72 115-186 56-138 (153)
46 3lou_A Formyltetrahydrofolate 84.7 4.3 0.00015 42.3 10.4 71 611-683 9-81 (292)
47 3hcy_A Putative two-component 81.4 1.2 4E-05 39.5 4.0 66 119-184 53-130 (151)
48 2pc6_A Probable acetolactate s 80.7 3.5 0.00012 39.5 7.3 65 613-683 5-71 (165)
49 2qyb_A Membrane protein, putat 80.2 5 0.00017 36.4 7.9 71 118-188 70-153 (181)
50 1y7p_A Hypothetical protein AF 80.1 3.6 0.00012 41.3 7.3 62 612-681 4-70 (223)
51 3nrb_A Formyltetrahydrofolate 80.0 6.2 0.00021 41.0 9.4 67 611-683 6-74 (287)
52 2f1f_A Acetolactate synthase i 80.0 2.4 8.2E-05 40.6 5.8 64 613-682 4-69 (164)
53 2fgc_A Acetolactate synthase, 77.6 6.7 0.00023 38.6 8.3 64 613-682 30-95 (193)
54 1mc0_A 3',5'-cyclic nucleotide 77.2 5.1 0.00018 40.9 7.8 69 115-185 245-329 (368)
55 1mc0_A 3',5'-cyclic nucleotide 74.5 2.3 7.8E-05 43.6 4.3 72 115-186 75-159 (368)
56 3ibj_A CGMP-dependent 3',5'-cy 70.3 2.5 8.6E-05 48.4 3.7 70 114-185 244-329 (691)
57 3ibj_A CGMP-dependent 3',5'-cy 59.7 7.5 0.00025 44.5 5.0 67 115-182 76-155 (691)
58 3p01_A Two-component response 58.2 11 0.00037 34.6 5.0 67 119-185 94-171 (184)
59 1ykd_A Adenylate cyclase; GAF 57.6 2.6 8.9E-05 44.0 0.6 56 115-170 75-143 (398)
60 2f06_A Conserved hypothetical 55.2 56 0.0019 29.4 9.2 56 615-680 75-130 (144)
61 2re1_A Aspartokinase, alpha an 51.8 42 0.0014 31.3 8.0 53 606-658 19-73 (167)
62 2dt9_A Aspartokinase; protein- 49.1 50 0.0017 30.7 8.0 53 606-658 10-66 (167)
63 2dtj_A Aspartokinase; protein- 48.8 54 0.0019 30.9 8.3 41 606-646 9-50 (178)
64 3bjc_A CGMP-specific 3',5'-cyc 46.7 4.1 0.00014 48.2 0.0 70 114-185 224-311 (878)
65 3o5y_A Sensor protein; GAF dom 44.5 21 0.00072 33.2 4.5 71 115-187 54-137 (165)
66 2k2n_A Sensor protein, SYB-CPH 38.1 24 0.00081 32.0 3.8 67 119-185 77-159 (172)
67 2f06_A Conserved hypothetical 37.4 1.4E+02 0.0049 26.5 8.9 33 614-646 8-40 (144)
68 3bjc_A CGMP-specific 3',5'-cyc 33.6 8.8 0.0003 45.4 0.0 56 114-171 406-477 (878)
69 2re1_A Aspartokinase, alpha an 33.0 1.8E+02 0.0061 26.9 9.0 49 606-656 97-148 (167)
70 2lb5_A Sensor histidine kinase 32.7 26 0.00088 32.7 3.1 69 119-187 107-191 (208)
71 2qmx_A Prephenate dehydratase; 32.2 1.2E+02 0.004 31.3 8.2 68 613-685 201-269 (283)
72 3cit_A Sensor histidine kinase 30.3 64 0.0022 30.7 5.4 53 117-186 78-140 (160)
73 3ab4_A Aspartokinase; aspartat 27.5 2.4E+02 0.0082 30.2 10.1 39 606-644 258-297 (421)
74 3s1t_A Aspartokinase; ACT doma 27.0 2E+02 0.007 27.2 8.4 53 606-658 10-66 (181)
75 2wt7_A Proto-oncogene protein 26.4 1E+02 0.0035 24.5 5.2 39 490-541 1-39 (63)
76 2dt9_A Aspartokinase; protein- 25.9 2E+02 0.0068 26.5 8.0 67 605-683 88-157 (167)
77 2dtj_A Aspartokinase; protein- 25.3 1.5E+02 0.0052 27.7 7.2 66 606-683 89-157 (178)
78 3luy_A Probable chorismate mut 23.9 3.6E+02 0.012 28.3 10.3 60 621-685 217-277 (329)
79 2qmw_A PDT, prephenate dehydra 22.0 1.6E+02 0.0055 30.1 6.9 67 612-684 186-256 (267)
80 4go7_X Aspartokinase; transfer 21.2 2.4E+02 0.0082 27.4 7.8 54 607-660 30-87 (200)
81 2oqq_A Transcription factor HY 20.6 47 0.0016 24.8 1.9 17 525-541 3-19 (42)
82 3mwb_A Prephenate dehydratase; 20.3 1.8E+02 0.0061 30.4 7.0 67 613-684 202-270 (313)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.48 E-value=2.5e-14 Score=123.46 Aligned_cols=60 Identities=30% Similarity=0.511 Sum_probs=57.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhccCCCC-CCCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 037798 482 MSANHVLAERRRREKLNERFIILRSLVPFV-TKMDKASILGDTIEYVKQLRKKIQDLESRN 541 (687)
Q Consensus 482 ~~~~H~~~ER~RR~kin~~f~~LrsLvP~~-~K~dKaSIL~~aI~YIk~Lq~~v~~Le~~~ 541 (687)
.+.+|+.+||+||++||+.|..|++|||.. .|+||++||.+||+||++|+.+++.|+.++
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~ 66 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQEN 66 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999999999976 899999999999999999999999999988
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.36 E-value=5.7e-13 Score=111.81 Aligned_cols=57 Identities=26% Similarity=0.438 Sum_probs=52.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhccCCC-CCCCCccchHHHHHHHHHHHHHHHHHHH
Q 037798 482 MSANHVLAERRRREKLNERFIILRSLVPF-VTKMDKASILGDTIEYVKQLRKKIQDLE 538 (687)
Q Consensus 482 ~~~~H~~~ER~RR~kin~~f~~LrsLvP~-~~K~dKaSIL~~aI~YIk~Lq~~v~~Le 538 (687)
.+.+|+.+||+||++||++|..|++|||. ..|+||++||..||+||++||.++.=|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 47899999999999999999999999995 5699999999999999999999886554
No 3
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.35 E-value=7.9e-13 Score=113.47 Aligned_cols=61 Identities=31% Similarity=0.524 Sum_probs=57.5
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhccCCCC--CCCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 037798 481 EMSANHVLAERRRREKLNERFIILRSLVPFV--TKMDKASILGDTIEYVKQLRKKIQDLESRN 541 (687)
Q Consensus 481 ~~~~~H~~~ER~RR~kin~~f~~LrsLvP~~--~K~dKaSIL~~aI~YIk~Lq~~v~~Le~~~ 541 (687)
..+.+|+..||+||.+||+.|..|+++||.. .|++|++||..||+||++|++++++|+.++
T Consensus 11 ~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~ 73 (80)
T 1hlo_A 11 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999954 799999999999999999999999999988
No 4
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.34 E-value=1e-12 Score=113.41 Aligned_cols=60 Identities=32% Similarity=0.490 Sum_probs=56.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhccCCC--CCCCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 037798 482 MSANHVLAERRRREKLNERFIILRSLVPF--VTKMDKASILGDTIEYVKQLRKKIQDLESRN 541 (687)
Q Consensus 482 ~~~~H~~~ER~RR~kin~~f~~LrsLvP~--~~K~dKaSIL~~aI~YIk~Lq~~v~~Le~~~ 541 (687)
.+.+|+..||+||.+||+.|..|+++||. ..|++|++||..||+||+.|+.++++|+.++
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~ 63 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999995 5899999999999999999999999988877
No 5
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.31 E-value=1.5e-12 Score=119.61 Aligned_cols=60 Identities=32% Similarity=0.557 Sum_probs=52.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhccCCCC----CCCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 037798 482 MSANHVLAERRRREKLNERFIILRSLVPFV----TKMDKASILGDTIEYVKQLRKKIQDLESRN 541 (687)
Q Consensus 482 ~~~~H~~~ER~RR~kin~~f~~LrsLvP~~----~K~dKaSIL~~aI~YIk~Lq~~v~~Le~~~ 541 (687)
.+.+|+.+||+||++||++|..|++|||.. .|++|++||.+||+||++|+.+++.|+...
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999999999965 478899999999999999999999998765
No 6
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.31 E-value=1.7e-12 Score=113.55 Aligned_cols=60 Identities=30% Similarity=0.458 Sum_probs=55.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhccCCCC---CCCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 037798 482 MSANHVLAERRRREKLNERFIILRSLVPFV---TKMDKASILGDTIEYVKQLRKKIQDLESRN 541 (687)
Q Consensus 482 ~~~~H~~~ER~RR~kin~~f~~LrsLvP~~---~K~dKaSIL~~aI~YIk~Lq~~v~~Le~~~ 541 (687)
.+..|+..||+||.+||+.|..|+.+||.. .|++|++||.+||+||++|+.+.+.|..++
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~ 68 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999954 699999999999999999999998877655
No 7
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.31 E-value=5e-13 Score=110.24 Aligned_cols=52 Identities=33% Similarity=0.567 Sum_probs=48.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhccCCCCC------CCCccchHHHHHHHHHHHHHHH
Q 037798 483 SANHVLAERRRREKLNERFIILRSLVPFVT------KMDKASILGDTIEYVKQLRKKI 534 (687)
Q Consensus 483 ~~~H~~~ER~RR~kin~~f~~LrsLvP~~~------K~dKaSIL~~aI~YIk~Lq~~v 534 (687)
+.+|+.+||+||++||+.|..|++|||... |++|++||.+||+||++|+++.
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999999999999654 7899999999999999999764
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.29 E-value=3.4e-13 Score=110.85 Aligned_cols=52 Identities=27% Similarity=0.397 Sum_probs=47.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhccCCC-------CCCCCccchHHHHHHHHHHHHHHH
Q 037798 483 SANHVLAERRRREKLNERFIILRSLVPF-------VTKMDKASILGDTIEYVKQLRKKI 534 (687)
Q Consensus 483 ~~~H~~~ER~RR~kin~~f~~LrsLvP~-------~~K~dKaSIL~~aI~YIk~Lq~~v 534 (687)
+.+|..+||+||++||..|..|++|||. ..|.+||+||+.||+||++||+++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999993 367789999999999999999765
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.25 E-value=1.7e-12 Score=109.69 Aligned_cols=51 Identities=37% Similarity=0.503 Sum_probs=47.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhccCCCC----CCCCccchHHHHHHHHHHHHH
Q 037798 482 MSANHVLAERRRREKLNERFIILRSLVPFV----TKMDKASILGDTIEYVKQLRK 532 (687)
Q Consensus 482 ~~~~H~~~ER~RR~kin~~f~~LrsLvP~~----~K~dKaSIL~~aI~YIk~Lq~ 532 (687)
.+.+|..+||+||++||+.|..|++|||.+ .|+||++||..||+||+.|+.
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 367999999999999999999999999954 799999999999999999974
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.22 E-value=1.5e-11 Score=105.59 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=55.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhccCCC---CCCCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 037798 483 SANHVLAERRRREKLNERFIILRSLVPF---VTKMDKASILGDTIEYVKQLRKKIQDLESRN 541 (687)
Q Consensus 483 ~~~H~~~ER~RR~kin~~f~~LrsLvP~---~~K~dKaSIL~~aI~YIk~Lq~~v~~Le~~~ 541 (687)
+..|+..||+||..||+.|..|+++||. ..|.+|++||.+|++||++|+.+.++|..++
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~ 63 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999994 4788999999999999999999999998877
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.16 E-value=1.2e-11 Score=105.36 Aligned_cols=59 Identities=25% Similarity=0.401 Sum_probs=48.9
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhccCCC---CCCC-CccchHHHHHHHHHHHHHHHHHHHh
Q 037798 481 EMSANHVLAERRRREKLNERFIILRSLVPF---VTKM-DKASILGDTIEYVKQLRKKIQDLES 539 (687)
Q Consensus 481 ~~~~~H~~~ER~RR~kin~~f~~LrsLvP~---~~K~-dKaSIL~~aI~YIk~Lq~~v~~Le~ 539 (687)
+.+..|+..||+||.+||+.|..||.+||. ..|. .|++||..||+||+.|++++++++.
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999994 4455 6888999999999999999998764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.86 E-value=1.2e-09 Score=91.02 Aligned_cols=54 Identities=28% Similarity=0.445 Sum_probs=49.3
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhccCCC--CCCCCccchHHHHHHHHHHHHHHH
Q 037798 481 EMSANHVLAERRRREKLNERFIILRSLVPF--VTKMDKASILGDTIEYVKQLRKKI 534 (687)
Q Consensus 481 ~~~~~H~~~ER~RR~kin~~f~~LrsLvP~--~~K~dKaSIL~~aI~YIk~Lq~~v 534 (687)
..+..|+..||+|+..||+.|..||.+||. ..|.+|+.||..||+||..|++.+
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999999999999999994 478999999999999999999855
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.81 E-value=3.5e-09 Score=86.19 Aligned_cols=53 Identities=26% Similarity=0.320 Sum_probs=48.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhccCCC---CCCCCccchHHHHHHHHHHHHHHHH
Q 037798 483 SANHVLAERRRREKLNERFIILRSLVPF---VTKMDKASILGDTIEYVKQLRKKIQ 535 (687)
Q Consensus 483 ~~~H~~~ER~RR~kin~~f~~LrsLvP~---~~K~dKaSIL~~aI~YIk~Lq~~v~ 535 (687)
+..|+..||+|+..||+.|..||.+||. ..|.+|+.||..||+||+.|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 5679999999999999999999999994 4689999999999999999998653
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.59 E-value=2.3e-08 Score=106.89 Aligned_cols=52 Identities=25% Similarity=0.498 Sum_probs=42.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhccCC-CCCCCCccchHHHHHHHHHHHHHH
Q 037798 482 MSANHVLAERRRREKLNERFIILRSLVP-FVTKMDKASILGDTIEYVKQLRKK 533 (687)
Q Consensus 482 ~~~~H~~~ER~RR~kin~~f~~LrsLvP-~~~K~dKaSIL~~aI~YIk~Lq~~ 533 (687)
.+.+|+.+||+||++||+.|..|++||| ...|+||++||..||.|||.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 3678999999999999999999999999 678999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.44 E-value=9.4e-08 Score=103.36 Aligned_cols=52 Identities=37% Similarity=0.509 Sum_probs=48.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhccCC----CCCCCCccchHHHHHHHHHHHHHH
Q 037798 482 MSANHVLAERRRREKLNERFIILRSLVP----FVTKMDKASILGDTIEYVKQLRKK 533 (687)
Q Consensus 482 ~~~~H~~~ER~RR~kin~~f~~LrsLvP----~~~K~dKaSIL~~aI~YIk~Lq~~ 533 (687)
.+.+|+.+||+||++||+.|..|++||| ...|+||++||..||.|||.|+..
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 4779999999999999999999999999 678999999999999999999843
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.20 E-value=2.6e-07 Score=76.57 Aligned_cols=44 Identities=27% Similarity=0.403 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCC---CCCCCccchHHHHHHHHHHHHH
Q 037798 489 AERRRREKLNERFIILRSLVPF---VTKMDKASILGDTIEYVKQLRK 532 (687)
Q Consensus 489 ~ER~RR~kin~~f~~LrsLvP~---~~K~dKaSIL~~aI~YIk~Lq~ 532 (687)
.||+|+..||+-|..||.+||. ..|.+|.-||.-||+||..||.
T Consensus 21 rER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 21 EPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4899999999999999999994 4688999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.07 E-value=2.6e-06 Score=73.21 Aligned_cols=48 Identities=25% Similarity=0.510 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhccCCCC----CCCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 037798 494 REKLNERFIILRSLVPFV----TKMDKASILGDTIEYVKQLRKKIQDLESRN 541 (687)
Q Consensus 494 R~kin~~f~~LrsLvP~~----~K~dKaSIL~~aI~YIk~Lq~~v~~Le~~~ 541 (687)
|..||++|..|..|||.. .|.+|.+||..|++||++||+.++.+.+..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999953 578999999999999999999888777654
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.53 E-value=8.3e-05 Score=65.77 Aligned_cols=48 Identities=25% Similarity=0.385 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCC---CCCCCccchHHHHHHHHHHHHHHHHH
Q 037798 489 AERRRREKLNERFIILRSLVPF---VTKMDKASILGDTIEYVKQLRKKIQD 536 (687)
Q Consensus 489 ~ER~RR~kin~~f~~LrsLvP~---~~K~dKaSIL~~aI~YIk~Lq~~v~~ 536 (687)
.||.|-..||+-|..||.+||. ..|..|.-+|.-||+||..|+.-+++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3678888999999999999994 46889999999999999999987654
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.97 E-value=0.0074 Score=51.13 Aligned_cols=67 Identities=12% Similarity=0.216 Sum_probs=58.0
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
.+.|.|.|+.|+|+|.+|..+|.+.|..|.+++....++.+...+...+. + ......|.++|.++..
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~----~-~~~l~~l~~~L~~~~~ 71 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD----E-KQDFTYLRNEFEAFGQ 71 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES----S-CCCHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC----C-CCCHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999988888988888888775 2 4578999999987654
No 20
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=95.14 E-value=0.043 Score=49.78 Aligned_cols=72 Identities=21% Similarity=0.324 Sum_probs=47.4
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCCCcc-c--cccCCCeEEEEeeCC-----cEEEecccccc---cCCHHHHHHH
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDSKTF-S--RAILAKTVVCIPFLD-----GVVELGTTEKV---PEDLALVQHV 183 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f-~--R~~lAkTvvciP~~~-----GVvELGSte~V---~Ed~~lv~~i 183 (687)
.++.|.|+.|+++.+|+++++.+......... . +..-.+.++|||+.. |||.+++.+.- .+|..+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~~l~~l 156 (181)
T 3e0y_A 77 RIKIGDGITGSVARDGQYISLSRASQDPRYRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNTTSIRSFHEDEIYFVSII 156 (181)
T ss_dssp EEETTTSSHHHHHHHCCCEEEEEECCCCCC---------CEEEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHHHH
T ss_pred cccCCCCeeeehhhcCCeEEecCcccCccccccccccccCcceEEEEEEEeCCeEEEEEEEeeCCCCCCCHHHHHHHHHH
Confidence 45668999999999999999986654222111 1 111124999999876 99999998632 3455566555
Q ss_pred HHH
Q 037798 184 KSL 186 (687)
Q Consensus 184 k~~ 186 (687)
-..
T Consensus 157 a~~ 159 (181)
T 3e0y_A 157 ANL 159 (181)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 21
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.14 E-value=0.081 Score=51.14 Aligned_cols=66 Identities=8% Similarity=0.132 Sum_probs=55.0
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
.+.|.|.|+.|+|++..|..+|.+.|+.|+.++..+..|.|+..+...... .....|+++|.++..
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~------~~~~~l~~~L~~~~~ 71 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP------SNITRVETTLPLLGQ 71 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC------CCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998888888876665431 356788888877653
No 22
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=94.85 E-value=0.056 Score=51.75 Aligned_cols=73 Identities=16% Similarity=0.352 Sum_probs=52.9
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCCCccccccCCCeEEEEeeCC-----cEEEeccccc---ccCCHHHHHHHHHH
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRAILAKTVVCIPFLD-----GVVELGTTEK---VPEDLALVQHVKSL 186 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f~R~~lAkTvvciP~~~-----GVvELGSte~---V~Ed~~lv~~ik~~ 186 (687)
.|+.|+|+.|+|+.+|+++.+.+...-+.+ ..+..-.+..+|||+.. |||.+.+.+. -.+|..+++.+-..
T Consensus 77 ~i~~geGi~G~v~~~g~~~~v~Dv~~~p~~-~~~~~~~~S~i~vPi~~~g~viGVL~i~s~~~~~F~~~d~~~L~~lA~~ 155 (167)
T 3mmh_A 77 RIPFGRGVCGQAWAKGGTVVVGDVDAHPDH-IACSSLSRSEIVVPLFSDGRCIGVLDADSEHLAQFDETDALYLGELAKI 155 (167)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCGGGSTTC-CCSSTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred EeccCCChHHHHHhCCcEEEECCcccCcch-hhcCccCCeEEEEEeccCCEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 567799999999999999999987653322 12222335899999864 9999999653 24567777777665
Q ss_pred hh
Q 037798 187 FI 188 (687)
Q Consensus 187 F~ 188 (687)
..
T Consensus 156 la 157 (167)
T 3mmh_A 156 LE 157 (167)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 23
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=94.82 E-value=0.07 Score=52.46 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=53.7
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCCCccccccCCCeEEEEeeCC-----cEEEeccccc---ccCCHHHHHHHHHH
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRAILAKTVVCIPFLD-----GVVELGTTEK---VPEDLALVQHVKSL 186 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f~R~~lAkTvvciP~~~-----GVvELGSte~---V~Ed~~lv~~ik~~ 186 (687)
.|+.|+|+.|+|+.+|+++.+.+....+.+ ..+..-.+.++|||+.. |||++.+.+. -.+|..+++.+-..
T Consensus 88 ~i~~GeGi~G~aa~tg~~i~V~Dv~~~p~~-~~~~~~~~S~l~VPI~~~g~viGVL~i~s~~~~~F~e~d~~~L~~lA~~ 166 (195)
T 1vhm_A 88 RIPVGRGVCGTAVARNQVQRIEDVHVFDGH-IACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQ 166 (195)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCTTTCTTC-CCSCCCCSEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred EecCCCChHHHHHhcCCEEEECCcccCcch-hhcCCCccEEEEEeEeECCEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence 566799999999999999999988753321 11111236999999865 9999999764 24577788777666
Q ss_pred hhh
Q 037798 187 FID 189 (687)
Q Consensus 187 F~~ 189 (687)
...
T Consensus 167 ia~ 169 (195)
T 1vhm_A 167 LEK 169 (195)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 24
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=94.63 E-value=0.21 Score=41.36 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=41.4
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEc
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVK 661 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~ 661 (687)
.+.|.|.++.|+|+|.+|..+|.+.|+.+.++.....++.+...|...+.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~ 54 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK 54 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC
Confidence 35788999999999999999999999999999988766655555655554
No 25
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=94.58 E-value=0.11 Score=46.65 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=75.2
Q ss_pred hHHHHHHHHhhccCCceEEEEeeecCCCceEEecceeecCCcccccccCCCccChHHHHHHHHHHHHHHHHhhccCCCCC
Q 037798 8 SRLQSILQEAVQSVQWTYSLFWQICPQQGILIWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNQ 87 (687)
Q Consensus 8 ~~Lq~~L~~lv~~~~WtYAiFWq~s~~~~vL~WgDGyy~g~~~~~k~~~~~~~~~~~~~~~r~~~lreL~~sl~~g~~~~ 87 (687)
..|+..++.+++-.++.++.+|.+.++.+.|.+- ++.|....
T Consensus 25 ~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~--~~~g~~~~------------------------------------ 66 (171)
T 3trc_A 25 QALKLVVVRLCEALPADACSLFICDDVHGEYVLM--ATQGLNSK------------------------------------ 66 (171)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEE--EEESSCGG------------------------------------
T ss_pred HHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEE--EecCCCcc------------------------------------
Confidence 4677778888888999999999998866544433 11111100
Q ss_pred CCCCCCccCCCCCCCccceeeeeeeeeecCCCCCccceecccCCeeEeeCCCCCCCCc-c--ccccCCCeEEEEeeCC--
Q 037798 88 PTRRPSAALSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARQQHVWLTGANEVDSKT-F--SRAILAKTVVCIPFLD-- 162 (687)
Q Consensus 88 ~~~~~~~als~edltd~Ewfyl~sm~~sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~-f--~R~~lAkTvvciP~~~-- 162 (687)
... .+.++.|.|+.|+++.+++++++.+........ + .+..-.+.++|||+..
T Consensus 67 -------~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~ 124 (171)
T 3trc_A 67 -------QVG---------------KLRLKFGEGLIGLVGEREEPINLADAPLHPAYKHRPELGEEDYHGFLGIPIIEQG 124 (171)
T ss_dssp -------GTT---------------TCEEETTCHHHHHHHHHTSCEEESCGGGSTTCCCCGGGCCCCCCEEEEEEEEETT
T ss_pred -------ccc---------------cEeecCCCChhhHHHhcCCeEEeCCCCCCCcccccccCCcccccEEEEEeEEECC
Confidence 000 014566899999999999999998764422111 1 1222235999999865
Q ss_pred ---cEEEecccccc---cCCHHHHHHHHH
Q 037798 163 ---GVVELGTTEKV---PEDLALVQHVKS 185 (687)
Q Consensus 163 ---GVvELGSte~V---~Ed~~lv~~ik~ 185 (687)
|||.+++.+.- .+|..+++.+-.
T Consensus 125 ~~~Gvl~~~~~~~~~f~~~d~~~l~~la~ 153 (171)
T 3trc_A 125 ELLGILVIQQLESHHFAEEEEAFCVTLAI 153 (171)
T ss_dssp EEEEEEEEEESSSCCCCHHHHHHHHHHHH
T ss_pred EEEEEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 99999997542 244555555443
No 26
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.51 E-value=0.1 Score=50.97 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=52.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
.+.|.|.|+.|+|++..|..+|.++|+.|+.++..+..|.|++.+...... .........|+++|..+.
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~--~~~~~~~~~l~~~L~~~~ 73 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNA--KDGKLIQSALESALPGFQ 73 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS--SSSHHHHHHHHHHSTTCE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecC--ccchhHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999998888888766665431 000012566666665443
No 27
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.29 E-value=0.15 Score=49.67 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=54.6
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeC------CEEEEEEEEEEccccCCcccCHHHHHHHHHHHhhc
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTN------GVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIPQ 684 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~d------g~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~k 684 (687)
...|+|.|+.|+|++..|-..|-++|+.|+.++..+.. ++|+..+...+.. ... .+|+++|..+..+
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~-----~~~-~~l~~~l~~~a~~ 165 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF-----PLY-QEVVTALSRVEEE 165 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG-----GGH-HHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC-----Ccc-HHHHHHHHHHHHH
Confidence 46899999999999999999999999999999988765 7888777666542 235 8888888876543
No 28
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=94.04 E-value=0.022 Score=53.86 Aligned_cols=71 Identities=17% Similarity=0.280 Sum_probs=51.7
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCCCcccc------ccCCCeEEEEeeCC-----cEEEecccccc----cCCHHH
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSR------AILAKTVVCIPFLD-----GVVELGTTEKV----PEDLAL 179 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f~R------~~lAkTvvciP~~~-----GVvELGSte~V----~Ed~~l 179 (687)
.|+.|+|+.|+++.+|+++++.++..-. .|.+ +.-.+.++|||+.. |||+|.+...- .+|..+
T Consensus 82 ~~~~~~gi~g~v~~tg~~v~i~d~~~d~--~f~~~~~~~~~~~~~S~L~vPl~~~~~viGVL~l~n~~~~~~Ft~~d~~l 159 (180)
T 3dba_A 82 VFPLDIGIAGWVAHTKKFFNIPDVKKNN--HFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEEV 159 (180)
T ss_dssp EECTTSSHHHHHHHHTCCEEESCGGGCT--TCCCHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEESSSSSCCHHHHHH
T ss_pred eeeCCCCHHHHHHHhCCEEEecCCCCCc--ccChhhccccCccccEEEEEEeccCCEEEEEEEEEeCCCCCCCCHHHHHH
Confidence 5678999999999999999999875432 3322 22346999999876 99999876532 356677
Q ss_pred HHHHHHHh
Q 037798 180 VQHVKSLF 187 (687)
Q Consensus 180 v~~ik~~F 187 (687)
++.+-+.-
T Consensus 160 L~~lA~~a 167 (180)
T 3dba_A 160 FKKYLNFI 167 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665543
No 29
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=93.91 E-value=0.09 Score=48.32 Aligned_cols=70 Identities=16% Similarity=0.301 Sum_probs=50.0
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCCCccc------cccCCCeEEEEeeCC-----cEEEecccccc----cCCHHH
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDSKTFS------RAILAKTVVCIPFLD-----GVVELGTTEKV----PEDLAL 179 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f~------R~~lAkTvvciP~~~-----GVvELGSte~V----~Ed~~l 179 (687)
.|+.|.|+.|+++.+|+++++.+..... .|. ...-.+.++|||+.. |||.+++...- .+|..|
T Consensus 85 ~~~~~~~~~~~v~~~~~~~~i~d~~~~~--~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~l~~~~~~~~f~~~d~~l 162 (189)
T 2e4s_A 85 RFSIEKGIAGQVARTGEVLNIPDAYADP--RFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDENN 162 (189)
T ss_dssp EEETTSHHHHHHHHHCCCEEESCGGGST--TCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHHH
T ss_pred EeeCCCcHHHHHHHhCCEEEecCCCcCc--ccChhhccccCCccceEEEEEeccCCeEEEEEEEEeCCCCCCCCHHHHHH
Confidence 5677999999999999999998764422 222 123335899999865 99999987643 456666
Q ss_pred HHHHHHH
Q 037798 180 VQHVKSL 186 (687)
Q Consensus 180 v~~ik~~ 186 (687)
++.+-..
T Consensus 163 l~~la~~ 169 (189)
T 2e4s_A 163 FKMFAVF 169 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665443
No 30
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=93.90 E-value=0.029 Score=54.33 Aligned_cols=74 Identities=20% Similarity=0.348 Sum_probs=56.8
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCCC-ccccccCCCeEEEEeeCC-----cEEEeccccc---ccCCHHHHHHHHH
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDSK-TFSRAILAKTVVCIPFLD-----GVVELGTTEK---VPEDLALVQHVKS 185 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~-~f~R~~lAkTvvciP~~~-----GVvELGSte~---V~Ed~~lv~~ik~ 185 (687)
.++.|+|+.|+|+.+|+++-+.+...-+.+ .|. ...+..+|||+.. |||.+.|.+. -.+|..+++.+-.
T Consensus 77 ri~~GeGv~G~va~tg~~i~V~Dv~~~p~~i~~~--~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~ 154 (171)
T 3rfb_A 77 RIALGKGVCGEAAHFQETVIVGDVTTYLNYISCD--SLAKSEIVVPMMKNGQLLGVLDLDSSEIEDYDAMDRDYLEQFVA 154 (171)
T ss_dssp EEETTSHHHHHHHHTTSCEEESCTTSCSSCCCSC--TTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHhhCCEEEECCcccCccccccC--cccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 677899999999999999999988764432 222 2236899999854 9999999643 2477888888888
Q ss_pred Hhhhc
Q 037798 186 LFIDD 190 (687)
Q Consensus 186 ~F~~~ 190 (687)
.+...
T Consensus 155 ~la~~ 159 (171)
T 3rfb_A 155 ILLEK 159 (171)
T ss_dssp HHHHS
T ss_pred HHHHH
Confidence 77654
No 31
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=93.83 E-value=0.16 Score=45.52 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=77.6
Q ss_pred hHHHHHHHHhhccCCceEEEEeeecCCCceEEecceeecCCcccccccCCCccChHHHHHHHHHHHHHHHHhhccCCCCC
Q 037798 8 SRLQSILQEAVQSVQWTYSLFWQICPQQGILIWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNQ 87 (687)
Q Consensus 8 ~~Lq~~L~~lv~~~~WtYAiFWq~s~~~~vL~WgDGyy~g~~~~~k~~~~~~~~~~~~~~~r~~~lreL~~sl~~g~~~~ 87 (687)
..|+..++.+++-.++.++.+|.+.++.+.|...-++- .....
T Consensus 19 ~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g--~~~~~----------------------------------- 61 (169)
T 3oov_A 19 EVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVG--TADFN----------------------------------- 61 (169)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEES--CSSCC-----------------------------------
T ss_pred HHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeC--chhhh-----------------------------------
Confidence 56778888888889999999999987666555432221 10000
Q ss_pred CCCCCCccCCCCCCCccceeeeeeeeeecCCCCCccceecccCCeeEeeCCCCCCCC-------ccccccCCCeEEEEee
Q 037798 88 PTRRPSAALSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARQQHVWLTGANEVDSK-------TFSRAILAKTVVCIPF 160 (687)
Q Consensus 88 ~~~~~~~als~edltd~Ewfyl~sm~~sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~-------~f~R~~lAkTvvciP~ 160 (687)
.-...+.+..|.|+.|+++.+++++++.+....... .+.+..-.+.++|||+
T Consensus 62 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl 120 (169)
T 3oov_A 62 ---------------------PAGVVLPLDQRGGVITKCFTDRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPI 120 (169)
T ss_dssp ---------------------CTTCEEESSGGGHHHHHHHHHTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEE
T ss_pred ---------------------hhcccCCcccccchHHHHHhcCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEEE
Confidence 000012233378999999999999999876543321 1333344469999998
Q ss_pred CC-----cEEEeccccc----ccCCHHHHHHHHHH
Q 037798 161 LD-----GVVELGTTEK----VPEDLALVQHVKSL 186 (687)
Q Consensus 161 ~~-----GVvELGSte~----V~Ed~~lv~~ik~~ 186 (687)
.. |||.+++... -.+|..+++.+-..
T Consensus 121 ~~~~~~iGvl~~~~~~~~~~f~~~d~~~l~~~a~~ 155 (169)
T 3oov_A 121 VVKGEAIGVFAVDNRSSRRSLNDTDVDTIKLFADQ 155 (169)
T ss_dssp EETTEEEEEEEEECTTSSSCCCHHHHHHHHHHHHH
T ss_pred EeCCcEEEEEEEEccccCCCCCHHHHHHHHHHHHH
Confidence 76 9999998643 23556666655443
No 32
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=93.67 E-value=0.044 Score=52.80 Aligned_cols=74 Identities=15% Similarity=0.245 Sum_probs=53.4
Q ss_pred eecCCCCCccceecccCCeeEeeCCCCCCCCccccccCCCeEEEEeeCC------cEEEeccccc---ccCCHHHHHHHH
Q 037798 114 FSFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRAILAKTVVCIPFLD------GVVELGTTEK---VPEDLALVQHVK 184 (687)
Q Consensus 114 ~sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f~R~~lAkTvvciP~~~------GVvELGSte~---V~Ed~~lv~~ik 184 (687)
..|+.|+|+.|+|+.+|+++.+.+...-+.+. .+..-.+.++|||+.. |||++.+.+. -.+|..+++.+-
T Consensus 92 ~~i~~g~Gi~G~aa~~g~~v~v~Dv~~dp~~~-~~~~~~~S~l~vPi~~~~g~viGVL~l~s~~~~~F~~~d~~~L~~la 170 (180)
T 1f5m_A 92 QMIQFGKGVCGTAASTKETQIVPDVNKYPGHI-ACDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHVDKEFLEKLA 170 (180)
T ss_dssp SEEETTSHHHHHHHHHTSCEEESCGGGSTTCC-CSSTTCCEEEEEEEECTTSCEEEEEEEEESSTTCCCHHHHHHHHHHH
T ss_pred eeecCCCcchhhhhhcCCEEEeCCcccCcccc-ccCcccceEEEEEEEcCCCeEEEEEEeccCCCCCcCHHHHHHHHHHH
Confidence 36788999999999999999999876433221 1222225999999976 9999998754 345667777766
Q ss_pred HHhh
Q 037798 185 SLFI 188 (687)
Q Consensus 185 ~~F~ 188 (687)
....
T Consensus 171 ~~~a 174 (180)
T 1f5m_A 171 KLIN 174 (180)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 33
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=93.59 E-value=0.14 Score=45.39 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=45.7
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCCCc-cc--cccCCCeEEEEeeCC-----cEEEecccccc---cCCHHHHHHH
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDSKT-FS--RAILAKTVVCIPFLD-----GVVELGTTEKV---PEDLALVQHV 183 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~-f~--R~~lAkTvvciP~~~-----GVvELGSte~V---~Ed~~lv~~i 183 (687)
.|+.+.|+.|+++.+++++++.+........ +. +..-.++++|||+.. |||.+++.+.- .+|..+++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~f~~~~~~~l~~l 153 (171)
T 3ci6_A 74 SLQLSEGLVGLVGQREEIVNLENASKHERFAYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKQPQDFSEAAESFLVTL 153 (171)
T ss_dssp EEETTSHHHHHHHHHTSCEEESSGGGSTTC---------CCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHH
T ss_pred eeeccCCeehhhhccCceEEecCCCcCcchhccccccccccceEEEEeEEECCEEEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 4456889999999999999998654322111 10 222235999999864 99999998642 2344555544
Q ss_pred HHH
Q 037798 184 KSL 186 (687)
Q Consensus 184 k~~ 186 (687)
-..
T Consensus 154 a~~ 156 (171)
T 3ci6_A 154 CAQ 156 (171)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 34
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=93.54 E-value=0.027 Score=53.90 Aligned_cols=73 Identities=14% Similarity=0.304 Sum_probs=53.8
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCCCccccccCCCeEEEEeeCC-----cEEEecccccc---cCCHHHHHHHHHH
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRAILAKTVVCIPFLD-----GVVELGTTEKV---PEDLALVQHVKSL 186 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f~R~~lAkTvvciP~~~-----GVvELGSte~V---~Ed~~lv~~ik~~ 186 (687)
.++.|+|+.|+|+.+|+++-+.+....+.+. .+....+..+|||+.. |||.+.|.+.- .+|..+++.+-..
T Consensus 76 ri~~GeGv~G~aa~~~~~i~V~Dv~~~p~~i-~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~ 154 (160)
T 3ksh_A 76 HIPIGKGVCGTAVSERRTQVVADVHQFKGHI-ACDANSKSEIVVPIFKDDKIIGVLDIDAPITDRFDDNDKEHLEAIVKI 154 (160)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCGGGSTTCC-GGGTTCSEEEEEEEEETTEEEEEEEEEESSSSCCCHHHHHHHHHHHHH
T ss_pred EeeCCCCHHHHHHhhCCEEEECCcccCcccc-ccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 6778999999999999999999887644321 1222236899999854 99999996432 4667777777665
Q ss_pred hh
Q 037798 187 FI 188 (687)
Q Consensus 187 F~ 188 (687)
+.
T Consensus 155 la 156 (160)
T 3ksh_A 155 IE 156 (160)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 35
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=93.18 E-value=0.42 Score=46.05 Aligned_cols=68 Identities=13% Similarity=0.257 Sum_probs=53.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee--------CCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT--------NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~--------dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
...|.|.|+.|+|++.+|.++|.+.|++|..+...+. .++|+..+...+. ...+..+++++|..+..
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~-----~~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-----SGCNLMQLQEEFDALCT 167 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-----TTSCHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC-----CCCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999888764 3466666655443 34578999999987664
Q ss_pred c
Q 037798 684 Q 684 (687)
Q Consensus 684 k 684 (687)
+
T Consensus 168 ~ 168 (192)
T 1u8s_A 168 A 168 (192)
T ss_dssp H
T ss_pred H
Confidence 3
No 36
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=92.01 E-value=0.1 Score=47.70 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=48.3
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCCCcc----ccccCCCeEEEEeeCC-----cEEEeccccc----ccCCHHHHH
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDSKTF----SRAILAKTVVCIPFLD-----GVVELGTTEK----VPEDLALVQ 181 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f----~R~~lAkTvvciP~~~-----GVvELGSte~----V~Ed~~lv~ 181 (687)
.|+.|.|+.|+++.+|+++++.+......... ......+.++|||+.. |||.+..... -.+|..|++
T Consensus 85 ~~~~~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~d~~ll~ 164 (189)
T 2zmf_A 85 RFSIEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDENNFK 164 (189)
T ss_dssp EEETTSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHHHHH
T ss_pred ccCCCccHHHHHHHhCCeEEEecccccccccccchhhcccccceEEEeeecccCceeeEEEEEEcCCCCCcCHHHHHHHH
Confidence 57789999999999999999987654332211 1222335899999865 8998864432 235666766
Q ss_pred HHHH
Q 037798 182 HVKS 185 (687)
Q Consensus 182 ~ik~ 185 (687)
.+-.
T Consensus 165 ~lA~ 168 (189)
T 2zmf_A 165 MFAV 168 (189)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 37
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=90.81 E-value=2.5 Score=38.05 Aligned_cols=118 Identities=8% Similarity=-0.004 Sum_probs=73.2
Q ss_pred hHHHHHHHHhhccCCceEEEEeeecCCCceE-EecceeecCCcccccccCCCccChHHHHHHHHHHHHHHHHhhccCCCC
Q 037798 8 SRLQSILQEAVQSVQWTYSLFWQICPQQGIL-IWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETN 86 (687)
Q Consensus 8 ~~Lq~~L~~lv~~~~WtYAiFWq~s~~~~vL-~WgDGyy~g~~~~~k~~~~~~~~~~~~~~~r~~~lreL~~sl~~g~~~ 86 (687)
..|+..++.+++-.+..++.+|-+.++.+.| .|..+|..+...
T Consensus 23 ~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~------------------------------------ 66 (177)
T 3k2n_A 23 ELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPE------------------------------------ 66 (177)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCS------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCc------------------------------------
Confidence 4577777777778899999999998865543 443333221100
Q ss_pred CCCCCCCccCCCCCCCccceeeeeeeeeecCCCCCccceecccCCeeEeeCCCCCCC-Ccc--------ccccCCCeEEE
Q 037798 87 QPTRRPSAALSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARQQHVWLTGANEVDS-KTF--------SRAILAKTVVC 157 (687)
Q Consensus 87 ~~~~~~~~als~edltd~Ewfyl~sm~~sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~-~~f--------~R~~lAkTvvc 157 (687)
.. ....++.+.|+.|+++.+++++.+ +....+. ..+ .+..-.+.++|
T Consensus 67 --------~~---------------~~~~~~~~~~~~~~v~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~ 122 (177)
T 3k2n_A 67 --------QL---------------RHQTRSIAGTWLEGHLDDRTVTVA-SIARDIPSFGADGAPLLWTLHELGMRQIVL 122 (177)
T ss_dssp --------TT---------------CCSEEECTTSGGGGGTTCCSCEEE-ETTTTCTTTTTTTCHHHHHHHHHTCCEEEE
T ss_pred --------hh---------------hcccCCccccHHHHHhccCCceEe-chhhcccccCCcchhHHHHHHHcCceEEEE
Confidence 00 012455689999999999999988 5443221 111 12222359999
Q ss_pred EeeCC-----cEEEecccccc---cCCHHHHHHHHH
Q 037798 158 IPFLD-----GVVELGTTEKV---PEDLALVQHVKS 185 (687)
Q Consensus 158 iP~~~-----GVvELGSte~V---~Ed~~lv~~ik~ 185 (687)
||+.. |||.+++...- .+|..|++.+-.
T Consensus 123 vPL~~~~~~iGvL~l~~~~~~~f~~~d~~ll~~lA~ 158 (177)
T 3k2n_A 123 SPLRSGGRVIGFLSFVSAEEKLWSDGDKSLLSGVSS 158 (177)
T ss_dssp EEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHH
Confidence 99866 99999986542 234455554433
No 38
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=89.61 E-value=1.8 Score=45.09 Aligned_cols=69 Identities=14% Similarity=0.288 Sum_probs=55.7
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEE--eeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 611 SDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSF--LTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 611 ~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS--~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
..+.|.+.|+.|+|+...|-..|-+.|..++..+.. ...|.|+..+...+. ....+.+++++++..+..
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~----~~~~~~~~L~~~f~~la~ 75 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAA----AKVIPLASLRTGFGVIAA 75 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEES----SCCCCHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcC----CCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999988775 357888776666554 234678999999876643
No 39
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=89.20 E-value=0.83 Score=48.94 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=56.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
.++|.|.|+.|+|+...|...|-+.|..|+.++-....|.|+..+...+.. ...+.++|+++|..+.
T Consensus 12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~----~~~~~~~l~~~l~~~~ 78 (415)
T 3p96_A 12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPA----DVADGPALRHDVEAAI 78 (415)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECH----HHHTSHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecC----CcCCHHHHHHHHHHHH
Confidence 468999999999999999999999999999999888999988877776653 2235688888887664
No 40
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=89.16 E-value=0.24 Score=45.54 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=39.4
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCCCccccccCCCeEEEEeeCC-----cEEEeccc
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRAILAKTVVCIPFLD-----GVVELGTT 170 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f~R~~lAkTvvciP~~~-----GVvELGSt 170 (687)
.|+.|+|+.|+++.+|+++++.+...-. . .+.++|||+.. |||.+...
T Consensus 55 ~~~~~~g~~g~v~~~g~~v~v~d~~~d~------~--~~s~l~vPL~~~~~~~GvL~l~~~ 107 (149)
T 2vjw_A 55 AIPVQDNAIGQAFRDRAPRRLDVLDGPG------L--GGPALVLPLRATDTVAGVLVAVQG 107 (149)
T ss_dssp EEESSSSHHHHHHHHCCCEEESCCCTTS------C--EEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccCCCCCHHHHHhhcCceEEecCcccCC------C--CCeEEEEEEccCCeEEEEEEEeeC
Confidence 5667999999999999999998875322 1 25899999875 99999886
No 41
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=88.51 E-value=0.93 Score=41.88 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=34.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEE
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFT 653 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~ 653 (687)
-|+|.|..|.|+|.+|+++|.+.++++..++.... |.+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~i~ 40 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GRIY 40 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TEEE
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CEEE
Confidence 48899999999999999999999999999998766 6533
No 42
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=88.47 E-value=2.3 Score=44.25 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=54.7
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEE--eeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 611 SDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSF--LTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 611 ~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS--~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
..+.|.|.|+.|+|+...|-..|-+.|..++..+.. ...|.|+..+..... ...+.+++++++..+..
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~-----~~~~~~~L~~~f~~la~ 76 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQP-----DDFDEAGFRAGLAERSE 76 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC-----SSCCHHHHHHHHHHHHG
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecC-----CCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999998877 357887765554443 24778999999977644
No 43
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=88.46 E-value=2.2 Score=44.77 Aligned_cols=68 Identities=12% Similarity=0.166 Sum_probs=54.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee--CCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT--NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~--dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
.+.|.+.|+.|+|+...|-..|-+.|..++.++.... .|.|+..+..... +...+.+++++++..+..
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~----~~~~~~~~L~~~l~~la~ 91 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRAD----TLPFDLDGFREAFTPIAE 91 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG----GSSSCHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC----CCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999887764 6887765544433 234678999999876543
No 44
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=87.73 E-value=1.1 Score=46.91 Aligned_cols=57 Identities=19% Similarity=0.394 Sum_probs=41.5
Q ss_pred ecCCCCCccceecccCCeeEee-CCCCCCCCccc----c--ccCCCeEEEEeeCC------cEEEecccc
Q 037798 115 SFPSGVGLPGKAYARQQHVWLT-GANEVDSKTFS----R--AILAKTVVCIPFLD------GVVELGTTE 171 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~-~~~~~~~~~f~----R--~~lAkTvvciP~~~------GVvELGSte 171 (687)
.++.|.|+.|+++.+|+++++. +.......... . +.-.+.++|||+.. |||.+.+..
T Consensus 262 ~~~~~~~~~~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~ 331 (398)
T 1ykd_A 262 RVPIGKGFAGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKK 331 (398)
T ss_dssp EEETTSHHHHHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEEC
T ss_pred eccCCCchhhHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecC
Confidence 5677899999999999999998 66443221111 1 22346899999973 999998876
No 45
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=86.16 E-value=0.73 Score=40.20 Aligned_cols=72 Identities=19% Similarity=0.288 Sum_probs=47.5
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCCC-ccc-cccCCCeEEEEeeCC-----cEEEeccccc----ccCCHHHHHHH
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDSK-TFS-RAILAKTVVCIPFLD-----GVVELGTTEK----VPEDLALVQHV 183 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~-~f~-R~~lAkTvvciP~~~-----GVvELGSte~----V~Ed~~lv~~i 183 (687)
.|+.|.|+.|+++.+++++++.+....... .+. +..-.+.++|||+.. |||.+++... -.+|..+++.+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~~~~~l~~l 135 (153)
T 2w3g_A 56 HLPKGLGVIGLLIEDPKPLRLDDVSAHPASIGFPPYHPPMRTFLGVPVRVRDESFGTLYLTDKTNGQPFSDDDEVLVQAL 135 (153)
T ss_dssp SCCCSCTHHHHHHHSCSCEEESSGGGSTTCCCCCTTCCCCCCEEEEEEEETTEEEEEEEEEEETTSCCCCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHhcCCcEEecCcccCchhcCCCCcCCCCCeEEEeeEEECCEEEEEEEEeeCCCCCCCCHHHHHHHHHH
Confidence 345589999999999999999875432111 111 222235999999865 9999998765 23455555555
Q ss_pred HHH
Q 037798 184 KSL 186 (687)
Q Consensus 184 k~~ 186 (687)
-..
T Consensus 136 a~~ 138 (153)
T 2w3g_A 136 AAA 138 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 46
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=84.74 E-value=4.3 Score=42.30 Aligned_cols=71 Identities=14% Similarity=0.242 Sum_probs=52.8
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe--eCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 611 SDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL--TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 611 ~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~--~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
..+.|.+.|+.|+|+...|-..|-+.|..++..+... ..|.|+..+...... .+...+.+++++++..+..
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~~~~~L~~~f~~la~ 81 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATD--DADALRVDALRREFEPIAE 81 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC------CCHHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccC--cccCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999988773 567777644433320 0114678999999876543
No 47
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=81.44 E-value=1.2 Score=39.46 Aligned_cols=66 Identities=5% Similarity=0.027 Sum_probs=40.3
Q ss_pred CCCccceecccCCeeEeeCCCCCCCC-c---cccccCCCeEEEEeeCC-----cEEEeccccccc---CCHHHHHHHH
Q 037798 119 GVGLPGKAYARQQHVWLTGANEVDSK-T---FSRAILAKTVVCIPFLD-----GVVELGTTEKVP---EDLALVQHVK 184 (687)
Q Consensus 119 G~GlpG~a~~~g~~~Wl~~~~~~~~~-~---f~R~~lAkTvvciP~~~-----GVvELGSte~V~---Ed~~lv~~ik 184 (687)
|.|..|+++.+|+++++.+....... . +.+..-.+.++|||+.. |||.+.+...-. +|..|++.+-
T Consensus 53 ~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~g~~s~~~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~ll~~~a 130 (151)
T 3hcy_A 53 GHSPWITGANEPEPIFVENVDDAEFSRELKESIVGEGIAALGFFPLVTEGRLIGKFMTYYDRPHRFADSEIGMALTIA 130 (151)
T ss_dssp BCCSCC---CCCCCEEESCGGGSCCCHHHHHHHHHHTCCEEEEEEEESSSSEEEEEEEEESSCCCCCHHHHHHHHHHH
T ss_pred CCCchhhhhhcCCcEEEeChhhCcccchhHHHHHhcCchheEEeceEECCEEEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 77889999999999999876543321 1 11222225899999866 999998765432 3444444443
No 48
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=80.74 E-value=3.5 Score=39.54 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=49.3
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee--CCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 613 ALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT--NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 613 vlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~--dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
-.|.|....++|+|.+|...|...|+.+.++.+... .+....+|...-. ...++.|.+.|.+++.
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d------~~~leql~kQL~Kl~d 71 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP------DEIVEQITKQLNKLIE 71 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC------HHHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc------HHHHHHHHHHhcCCCC
Confidence 367888999999999999999999998888777643 4777777777522 2346777777777653
No 49
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=80.20 E-value=5 Score=36.37 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=46.7
Q ss_pred CCCCccceecccCCeeEeeCCCCCCCCccc---cccCCCeEEEEeeCC------cEEEecc-ccc---ccCCHHHHHHHH
Q 037798 118 SGVGLPGKAYARQQHVWLTGANEVDSKTFS---RAILAKTVVCIPFLD------GVVELGT-TEK---VPEDLALVQHVK 184 (687)
Q Consensus 118 ~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f~---R~~lAkTvvciP~~~------GVvELGS-te~---V~Ed~~lv~~ik 184 (687)
.|+|+.|+++.+|+++.+.+........+. +..-.+.++|||+.. |||.+.+ ... -.+|..+++.+-
T Consensus 70 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~g~~s~~~vPl~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~~la 149 (181)
T 2qyb_A 70 EIETYIGEAFLSNRLQFVNDTQYMTKPLTRELMQKEGIKSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFLNLLESLA 149 (181)
T ss_dssp CTTSHHHHHHHHTSCEEESCGGGCSCHHHHHHHHHTTCCEEEEEEECCTTSCCCEEEEEEESSCSSCCCHHHHHHHHHHH
T ss_pred CCCCchhhhhhcCCCEEecChhcCCchhhHHHHHhcCcceEEEEEEEeCCCeEEEEEEEecCCCCCCCCHHHHHHHHHHH
Confidence 378999999999999999876543321111 111135899999852 9999998 543 234556666665
Q ss_pred HHhh
Q 037798 185 SLFI 188 (687)
Q Consensus 185 ~~F~ 188 (687)
..+.
T Consensus 150 ~~~a 153 (181)
T 2qyb_A 150 GQLA 153 (181)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 50
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=80.14 E-value=3.6 Score=41.34 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=45.4
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee-----CCEEEEEEEEEEccccCCcccCHHHHHHHHHHH
Q 037798 612 DALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT-----NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQI 681 (687)
Q Consensus 612 dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~-----dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~i 681 (687)
.+.|.|.+..|+|+|.+|+.+|.+.+..+.+++.+.. ++....+ .++.+ . ...++.+.|+++
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d-----~-~Le~LL~kLrkI 70 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEG-----G-DFEKILERVKTF 70 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECS-----S-CHHHHHHHHHTC
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECC-----C-CHHHHHHHHhCC
Confidence 4678899999999999999999999999999999885 4565544 55552 2 677777777653
No 51
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=80.04 E-value=6.2 Score=40.95 Aligned_cols=67 Identities=12% Similarity=0.316 Sum_probs=49.7
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEE--eeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhh
Q 037798 611 SDALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSF--LTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIP 683 (687)
Q Consensus 611 ~dvlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS--~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~ 683 (687)
..+.|.+.|+.|+|+...|-..|-+.|..++..+.. ...|.|+..+..... + ....++++++..+..
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~----~--~~~~~L~~~f~~la~ 74 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP----V--AGVNDFNSAFGKVVE 74 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC----C-----CHHHHHHHHHHG
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC----C--CCHHHHHHHHHHHHH
Confidence 356899999999999999999999999999988775 357787764444332 1 234588888876544
No 52
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=80.00 E-value=2.4 Score=40.62 Aligned_cols=64 Identities=6% Similarity=0.215 Sum_probs=48.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEee--CCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 613 ALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLT--NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 613 vlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~--dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
-.|.|....++|+|.+|...|.+.|+.+.++.+... .+....+|... . ....++.|.+.|++++
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~-----d~~~leqI~kqL~Kl~ 69 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G-----DEKVLEQIEKQLHKLV 69 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S-----CHHHHHHHHHHHHHST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-c-----cHHHHHHHHHHHcCCC
Confidence 367888999999999999999999999988877643 37777777665 2 2234677777777765
No 53
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=77.64 E-value=6.7 Score=38.62 Aligned_cols=64 Identities=14% Similarity=0.255 Sum_probs=50.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEe--eCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 613 ALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFL--TNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 613 vlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~--~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
-.|.|..+.++|.|.+|...|...|+.+.+..+.. ..++..++|.+.-. ...++.|++.|.+++
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~KLi 95 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYKLV 95 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTTST
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcCcC
Confidence 46778889999999999999999999999877753 34788888777532 245778888887754
No 54
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=77.22 E-value=5.1 Score=40.94 Aligned_cols=69 Identities=22% Similarity=0.333 Sum_probs=48.8
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCCCccccc------cCCCeEEEEeeCC------cEEEecccccc----cCCHH
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRA------ILAKTVVCIPFLD------GVVELGTTEKV----PEDLA 178 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f~R~------~lAkTvvciP~~~------GVvELGSte~V----~Ed~~ 178 (687)
.|+.|.|+.|+++.+|+++++.+..... .|.+. +-.+.++|||+.. |||.+++...- .+|..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~i~d~~~~~--~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~f~~~d~~ 322 (368)
T 1mc0_A 245 RIPADQGIAGHVATTGQILNIPDAYAHP--LFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDED 322 (368)
T ss_dssp EECTTSHHHHHHHHHCCCEEESCSTTCT--TCCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSSSCCHHHHH
T ss_pred eecCCCceeeeehhhCCEEEecCcccCc--ccchhhhhccCCccceEEEEeeECCCCcEEEEEEEEECCCCCCCCHHHHH
Confidence 5677999999999999999998775432 23221 2236999999853 89999987643 35566
Q ss_pred HHHHHHH
Q 037798 179 LVQHVKS 185 (687)
Q Consensus 179 lv~~ik~ 185 (687)
|++.+-.
T Consensus 323 ll~~la~ 329 (368)
T 1mc0_A 323 LATAFSI 329 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665443
No 55
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=74.54 E-value=2.3 Score=43.62 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=47.1
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCCCccc--cccCCCeEEEEeeC----C---cEEEeccccc----ccCCHHHHH
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDSKTFS--RAILAKTVVCIPFL----D---GVVELGTTEK----VPEDLALVQ 181 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f~--R~~lAkTvvciP~~----~---GVvELGSte~----V~Ed~~lv~ 181 (687)
.|+.|.|+.|.++.+|+++++.+........+. ...-.++++|||+. + |||.+.+... -.+|..+++
T Consensus 75 ~~~~~~g~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~~~~~~f~~~d~~~l~ 154 (368)
T 1mc0_A 75 SFPLTMGRLGQVVEDKQCIQLKDLTSDDVQQLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGDFFTDEDEHVIQ 154 (368)
T ss_dssp EEESSSSSHHHHHHHCCCEEGGGSCHHHHHHHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSCCSHHHHHHH
T ss_pred eeccccCHHHHHHhcCCeEEecccccccccccccccCcccceEEEEEeecCCCCcEEEEEEeecCCCCCCCCHHHHHHHH
Confidence 567799999999999999999876432111111 12224699999985 3 8999876543 234556666
Q ss_pred HHHHH
Q 037798 182 HVKSL 186 (687)
Q Consensus 182 ~ik~~ 186 (687)
.+-..
T Consensus 155 ~la~~ 159 (368)
T 1mc0_A 155 HCFHY 159 (368)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 56
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=70.26 E-value=2.5 Score=48.45 Aligned_cols=70 Identities=21% Similarity=0.329 Sum_probs=49.3
Q ss_pred eecCCCCCccceecccCCeeEeeCCCCCCCCcccc------ccCCCeEEEEeeCC------cEEEecccccc----cCCH
Q 037798 114 FSFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSR------AILAKTVVCIPFLD------GVVELGTTEKV----PEDL 177 (687)
Q Consensus 114 ~sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f~R------~~lAkTvvciP~~~------GVvELGSte~V----~Ed~ 177 (687)
..++.|.|+.|+++.+|+++++.+...... |.+ +.-.+.++|||+.. |||.+.+...- .+|.
T Consensus 244 ~~~~~~~gi~g~v~~~g~~v~i~d~~~d~~--~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f~~~d~ 321 (691)
T 3ibj_A 244 IRIPADQGIAGHVATTGQILNIPDAYAHPL--FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDE 321 (691)
T ss_dssp EEEETTSHHHHHHHHHCSCEEESCSTTSTT--C------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSCCTTTT
T ss_pred eeccCCCCHHHHHHHhCCEEEecCcccCcc--ccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCCCHHHH
Confidence 357789999999999999999987754332 222 12235999999853 89999876533 5677
Q ss_pred HHHHHHHH
Q 037798 178 ALVQHVKS 185 (687)
Q Consensus 178 ~lv~~ik~ 185 (687)
.+++.+-.
T Consensus 322 ~ll~~lA~ 329 (691)
T 3ibj_A 322 DLATAFSI 329 (691)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766544
No 57
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=59.73 E-value=7.5 Score=44.49 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=43.7
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCCCcc--ccccCCCeEEEEeeCC-------cEEEeccccc----ccCCHHHHH
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDSKTF--SRAILAKTVVCIPFLD-------GVVELGTTEK----VPEDLALVQ 181 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f--~R~~lAkTvvciP~~~-------GVvELGSte~----V~Ed~~lv~ 181 (687)
.++.| |+.|+++.+|+++++.+...-..... ......++++|||+.. |||.+..... -.+|..+++
T Consensus 76 ~~p~~-Gi~g~v~~~~~pv~i~d~~~~~~~~~~~~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~~~~~~ft~~d~~lL~ 154 (691)
T 3ibj_A 76 SFPLT-GCLGQVVEDKKSIQLKDLTSEDVQQLQSMLGCELQAMLCVPVISRATDQVVALACAFNKLEGDLFTDEDEHVIQ 154 (691)
T ss_dssp EEECC-SSSHHHHHHCCCEEGGGSCHHHHHHHHHHHTSCCSCEEEEEEECSSSCSEEEEEEEESBSSSCCCCTTHHHHHH
T ss_pred ecCCc-cHHHHHHHHCCeEEeccchhccccccccccCCccceEEEEEeEcCCCCcEEEEEEEEcCCCCCCCCHHHHHHHH
Confidence 56779 99999999999999987653210000 1112246999999863 7999764422 345566655
Q ss_pred H
Q 037798 182 H 182 (687)
Q Consensus 182 ~ 182 (687)
.
T Consensus 155 ~ 155 (691)
T 3ibj_A 155 H 155 (691)
T ss_dssp H
T ss_pred H
Confidence 4
No 58
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=58.24 E-value=11 Score=34.62 Aligned_cols=67 Identities=19% Similarity=0.148 Sum_probs=43.1
Q ss_pred CCCccceecccCCeeEeeCCCCCC---CCccccccCCCeEEEEeeCC-----cEEEecccccc---cCCHHHHHHHHH
Q 037798 119 GVGLPGKAYARQQHVWLTGANEVD---SKTFSRAILAKTVVCIPFLD-----GVVELGTTEKV---PEDLALVQHVKS 185 (687)
Q Consensus 119 G~GlpG~a~~~g~~~Wl~~~~~~~---~~~f~R~~lAkTvvciP~~~-----GVvELGSte~V---~Ed~~lv~~ik~ 185 (687)
+.|+.|+++.+|+++.+.+..... ...+.+..-.+.++|||+.. |||.+.+...- .+|..|++.|-.
T Consensus 94 ~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~~GvL~l~~~~~~~f~~~d~~ll~~lA~ 171 (184)
T 3p01_A 94 QDPLTNEAIATGQIQVAANIAKDPKLASISQYQDNGIQSHVVIPITYRNEMLGVLSLQWQQPISLREDELTLIHLSAQ 171 (184)
T ss_dssp GCHHHHHHHHHCSCEEESCGGGCHHHHTCHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHhhCCeEEEeccccCccccchhHHHHhCccEEEEEEEEECCEEEEEEEeCcCCCCCCCHHHHHHHHHHHH
Confidence 467889999999999987654322 11112222336999999865 99999765432 345556665544
No 59
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=57.61 E-value=2.6 Score=43.97 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=40.9
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCC-Ccccc------ccCCCeEEEEeeCC------cEEEeccc
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDS-KTFSR------AILAKTVVCIPFLD------GVVELGTT 170 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~-~~f~R------~~lAkTvvciP~~~------GVvELGSt 170 (687)
.++.|.|+.|.++.+|+++++.+....+. ..|.+ ..-.++++|||+.. |||.+...
T Consensus 75 ~~~~~~g~~g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~ 143 (398)
T 1ykd_A 75 RIPADKGIAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNK 143 (398)
T ss_dssp EEETTSHHHHHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEE
T ss_pred ecCCCCchhhhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEecc
Confidence 56779999999999999999988754321 22322 22345999999862 89998765
No 60
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=55.23 E-value=56 Score=29.35 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=38.3
Q ss_pred EEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHH
Q 037798 615 VELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQ 680 (687)
Q Consensus 615 IeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ 680 (687)
|-+.-+.++|.+.+|+++|.+.|+.+...-++..++...+.|+. . ..+...++|++
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~--~--------d~~~A~~~L~~ 130 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP--S--------NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE--S--------CHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe--C--------CHHHHHHHHHH
Confidence 55567899999999999999999999665443234544444433 2 25666666665
No 61
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=51.76 E-value=42 Score=31.30 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=36.0
Q ss_pred EEEEcCeEEEEEEe-cCCCChHHHHHHHHHhcCcEEEEEEEE-eeCCEEEEEEEE
Q 037798 606 VSIIESDALVELQC-GNKEGLLLDIMQMLRELLIEVTAVQSF-LTNGVFTAQLRA 658 (687)
Q Consensus 606 Vsi~e~dvlIeI~C-~~reglLl~Im~aLeeL~LdV~sVqsS-~~dg~l~~tI~a 658 (687)
|....+.++|.|.. +.++|.+.+|+++|.+.|+.|..+..+ ..+|....+|..
T Consensus 19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v 73 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTV 73 (167)
T ss_dssp EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEE
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEE
Confidence 34455667888874 789999999999999999888765433 224544444433
No 62
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=49.10 E-value=50 Score=30.72 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=35.5
Q ss_pred EEEEcCeEEEEEEe-cCCCChHHHHHHHHHhcCcEEEEEEEEee---CCEEEEEEEE
Q 037798 606 VSIIESDALVELQC-GNKEGLLLDIMQMLRELLIEVTAVQSFLT---NGVFTAQLRA 658 (687)
Q Consensus 606 Vsi~e~dvlIeI~C-~~reglLl~Im~aLeeL~LdV~sVqsS~~---dg~l~~tI~a 658 (687)
|....+.++|.|.. +.++|.+.+|+++|.+.++.|..+..+.. +|....+|..
T Consensus 10 Ia~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V 66 (167)
T 2dt9_A 10 VALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTV 66 (167)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEE
T ss_pred EEEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEE
Confidence 34455666777765 67899999999999988888776544322 4444444443
No 63
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=48.77 E-value=54 Score=30.94 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=30.0
Q ss_pred EEEEcCeEEEEEE-ecCCCChHHHHHHHHHhcCcEEEEEEEE
Q 037798 606 VSIIESDALVELQ-CGNKEGLLLDIMQMLRELLIEVTAVQSF 646 (687)
Q Consensus 606 Vsi~e~dvlIeI~-C~~reglLl~Im~aLeeL~LdV~sVqsS 646 (687)
|....+.++|.|. -+.++|.+.+|++.|.+.++.|..+..+
T Consensus 9 Ia~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s 50 (178)
T 2dtj_A 9 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN 50 (178)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEEC
T ss_pred EEecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcC
Confidence 3445566678884 5789999999999999999655544333
No 64
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=46.66 E-value=4.1 Score=48.23 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=0.0
Q ss_pred eecCCCCCccceecccCCeeEeeCCCCCCCCcccc------ccCCCeEEEEeeCC------cEEEeccccc------ccC
Q 037798 114 FSFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSR------AILAKTVVCIPFLD------GVVELGTTEK------VPE 175 (687)
Q Consensus 114 ~sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f~R------~~lAkTvvciP~~~------GVvELGSte~------V~E 175 (687)
..|+.|.|+.|.++.+|+++++.++..-+ .|.. +.-.++++|||+.. |||.+.+... -.+
T Consensus 224 ~~~p~~~gi~g~v~~~g~pv~I~D~~~dp--~f~~~~~~~~~~~~~S~L~vPL~~~~g~viGvL~l~~~~~~~~~~ft~~ 301 (878)
T 3bjc_A 224 IRLEWNKGIVGHVAALGEPLNIKDAYEDP--RFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEK 301 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeCCccHHHHHHhcCceEEeCCcccCc--ccccccccccCCccceEEEEeeEcCCCCEEEEEEEEecCCCCCCCCCHH
Confidence 35788999999999999999998765422 2222 12235999999874 8999986542 234
Q ss_pred CHHHHHHHHH
Q 037798 176 DLALVQHVKS 185 (687)
Q Consensus 176 d~~lv~~ik~ 185 (687)
|..+++.+-.
T Consensus 302 D~~lL~~lA~ 311 (878)
T 3bjc_A 302 DEKDFAAYLA 311 (878)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 5555554433
No 65
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=44.46 E-value=21 Score=33.19 Aligned_cols=71 Identities=20% Similarity=0.430 Sum_probs=46.6
Q ss_pred ecCCCCCccceecccCCeeEeeCCCCCCCCccc-----cccCCCeEEEEeeCC-----cEEEecccccc---cCCHHHHH
Q 037798 115 SFPSGVGLPGKAYARQQHVWLTGANEVDSKTFS-----RAILAKTVVCIPFLD-----GVVELGTTEKV---PEDLALVQ 181 (687)
Q Consensus 115 sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f~-----R~~lAkTvvciP~~~-----GVvELGSte~V---~Ed~~lv~ 181 (687)
.++.|.++.|+++.+|+++=+..+.. + ..|. +..-.++++|+|+.. |||-|++...- .+|..+++
T Consensus 54 ~ip~~~s~~~~v~~~~~~~v~~~~~~-~-~~~~~~~~~~~~~~~S~l~vPL~~~~~~iGvl~l~~~~~~~f~~~d~~~l~ 131 (165)
T 3o5y_A 54 TIPKEQSLYWSALDQRQTIFRSLTDT-Q-DNFYEKQYLAILDLKSILVIPIYSKNKRVGVLSIGRKQQIDWSLDDLAFLE 131 (165)
T ss_dssp EECSTTCHHHHHHHHTSCEEEESCCT-T-CCCTTHHHHHTTTCCEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred ccCCccCHHHHHHHhCCeEEEcCccc-c-cccccchHHHhhCCCEEEEeCeeECCEEEEEEEEEeCCCCCCCHHHHHHHH
Confidence 46667888999999999985432221 1 1232 333346999999865 99999997643 35566666
Q ss_pred HHHHHh
Q 037798 182 HVKSLF 187 (687)
Q Consensus 182 ~ik~~F 187 (687)
.+-+.+
T Consensus 132 ~la~~~ 137 (165)
T 3o5y_A 132 QLTDHL 137 (165)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 66
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=38.10 E-value=24 Score=32.02 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=41.8
Q ss_pred CCCccce----ecccCCeeEeeCCCCCCCCcc----ccccCCCeEEEEeeCC-----cEEEecccccc---cCCHHHHHH
Q 037798 119 GVGLPGK----AYARQQHVWLTGANEVDSKTF----SRAILAKTVVCIPFLD-----GVVELGTTEKV---PEDLALVQH 182 (687)
Q Consensus 119 G~GlpG~----a~~~g~~~Wl~~~~~~~~~~f----~R~~lAkTvvciP~~~-----GVvELGSte~V---~Ed~~lv~~ 182 (687)
..|..|. ++.+|+++.+.+........+ .+..-.+.++|||+.. |||.+-....- .++..+++.
T Consensus 77 ~~~~~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~~~l~G~l~~~~~~~~~~~~~e~~~l~~ 156 (172)
T 2k2n_A 77 EAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEELQVVQL 156 (172)
T ss_dssp GGCCCCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECCCSCSSCCCEEEEEEECSCCCCCHHHHHHHHH
T ss_pred cccccccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEEEEECCEEEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 3555555 489999999998754332222 2233346999999876 99999876432 233445554
Q ss_pred HHH
Q 037798 183 VKS 185 (687)
Q Consensus 183 ik~ 185 (687)
+-.
T Consensus 157 la~ 159 (172)
T 2k2n_A 157 LAD 159 (172)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 67
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=37.45 E-value=1.4e+02 Score=26.55 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=27.7
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCcEEEEEEEE
Q 037798 614 LVELQCGNKEGLLLDIMQMLRELLIEVTAVQSF 646 (687)
Q Consensus 614 lIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS 646 (687)
.|.|.-+.++|.|.+|+.+|.+.|+.|..+...
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~ 40 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIA 40 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEE
Confidence 466677899999999999999999888876554
No 68
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=33.59 E-value=8.8 Score=45.43 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=0.0
Q ss_pred eecCCCCCccceecccCCeeEeeCCCCCCCCccccc---------cCCCeEEEEeeCC-------cEEEecccc
Q 037798 114 FSFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRA---------ILAKTVVCIPFLD-------GVVELGTTE 171 (687)
Q Consensus 114 ~sF~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f~R~---------~lAkTvvciP~~~-------GVvELGSte 171 (687)
..|+.|.|+.|+++.+|+++++.+..... .|.+. .-.+.++|||+.. |||+|....
T Consensus 406 ~~~p~~~gi~g~v~~~g~~v~i~D~~~d~--r~~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL~l~~~~ 477 (878)
T 3bjc_A 406 DANKINYMYAQYVKNTMEPLNIPDVSKDK--RFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKM 477 (878)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccchhhhHHHHHhhcCCeeeecCccccc--ccccccccccCccccccceEEEEEEecCCCCcEEEEEEEEEcC
Confidence 35778899999999999999998764322 22221 2246999999853 788886643
No 69
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=33.04 E-value=1.8e+02 Score=26.92 Aligned_cols=49 Identities=12% Similarity=0.069 Sum_probs=34.9
Q ss_pred EEEEcCeEEEEEEecC---CCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEE
Q 037798 606 VSIIESDALVELQCGN---KEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQL 656 (687)
Q Consensus 606 Vsi~e~dvlIeI~C~~---reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI 656 (687)
|.+..+-..|.|.... ++|++.+++++|.+.|+.|.... +....+.+.|
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv 148 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLI 148 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEE
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEE
Confidence 4444555678887764 88999999999999999998754 3444444333
No 70
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=32.66 E-value=26 Score=32.73 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=44.1
Q ss_pred CCCccce----ecccCCeeEeeCCCCCCCCcc----ccccCCCeEEEEeeCC-----cEEEeccccc---ccCCHHHHHH
Q 037798 119 GVGLPGK----AYARQQHVWLTGANEVDSKTF----SRAILAKTVVCIPFLD-----GVVELGTTEK---VPEDLALVQH 182 (687)
Q Consensus 119 G~GlpG~----a~~~g~~~Wl~~~~~~~~~~f----~R~~lAkTvvciP~~~-----GVvELGSte~---V~Ed~~lv~~ 182 (687)
++|..|. ++.+|+++-+.+........+ .+..-.+.++|||+.. |||.+.+... -.++..|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vPi~~~~~l~GvL~~~~~~~~~~~~~e~~ll~~ 186 (208)
T 2lb5_A 107 EAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEELQVVQL 186 (208)
T ss_dssp GGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEEEEECCEeEEEEEEeeCCCCCCCHHHHHHHHH
Confidence 4555554 789999998887654332222 2333346999999865 9999988743 2345566666
Q ss_pred HHHHh
Q 037798 183 VKSLF 187 (687)
Q Consensus 183 ik~~F 187 (687)
|-..+
T Consensus 187 la~~~ 191 (208)
T 2lb5_A 187 LADQV 191 (208)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 71
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=32.15 E-value=1.2e+02 Score=31.30 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=48.1
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCcEEEEEEEEeeC-CEEEEEEEEEEccccCCcccCHHHHHHHHHHHhhcc
Q 037798 613 ALVELQCGNKEGLLLDIMQMLRELLIEVTAVQSFLTN-GVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIPQY 685 (687)
Q Consensus 613 vlIeI~C~~reglLl~Im~aLeeL~LdV~sVqsS~~d-g~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~k~ 685 (687)
..|-+.-+.++|.|.++|..|...|++.+...|--.. +..-|.|.+.+. |. ..-..+++||..+-..|
T Consensus 201 tsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e----g~-~~d~~v~~aL~~L~~~~ 269 (283)
T 2qmx_A 201 TSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI----GH-REDQNVHNALENLREFA 269 (283)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE----SC-TTSHHHHHHHHHHHTTC
T ss_pred EEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe----cC-CCcHHHHHHHHHHHHhc
Confidence 3444555789999999999999999999999988643 344566666666 32 22256777777665443
No 72
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=30.30 E-value=64 Score=30.68 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=33.9
Q ss_pred CCCCCccceecccCCeeEeeCCCCCCCCccccccCCCeEEEEeeC-C-----cEEEecccccc----cCCHHHHHHHHHH
Q 037798 117 PSGVGLPGKAYARQQHVWLTGANEVDSKTFSRAILAKTVVCIPFL-D-----GVVELGTTEKV----PEDLALVQHVKSL 186 (687)
Q Consensus 117 ~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~f~R~~lAkTvvciP~~-~-----GVvELGSte~V----~Ed~~lv~~ik~~ 186 (687)
.+|.|+.| +.|.. ++ +.--+.|+|||+. . |||++...... .||.++++.+-..
T Consensus 78 ~~~~~~~g-------pr~~~---------~t-g~~t~svl~vPL~~~~g~~~Gvlql~N~~~~~~f~~eD~e~l~lLA~~ 140 (160)
T 3cit_A 78 TADPLAIG-------PQWLE---------RP-GTHLPCVLLLPLRGADEGSFGTLVLANSVAISAPDGEDIESLQLLATL 140 (160)
T ss_dssp CCCTTCCS-------CEEEE---------CT-TSSSCEEEEEEEECSSSSEEEEEEEEESSCCCCCCHHHHHHHHHHHHH
T ss_pred cccccccc-------ccccc---------cc-CcccceeEEEeeecCCCcEEEEEEEeccCCCCCCCHHHHHHHHHHHHH
Confidence 56778888 77873 11 1112489999994 3 99999655544 4566666655443
No 73
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=27.49 E-value=2.4e+02 Score=30.22 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=31.9
Q ss_pred EEEEcCeEEEEEE-ecCCCChHHHHHHHHHhcCcEEEEEE
Q 037798 606 VSIIESDALVELQ-CGNKEGLLLDIMQMLRELLIEVTAVQ 644 (687)
Q Consensus 606 Vsi~e~dvlIeI~-C~~reglLl~Im~aLeeL~LdV~sVq 644 (687)
|....+.++|.|. .+.++|.+.+|++.|.+.++.|..+.
T Consensus 258 i~~~~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~ 297 (421)
T 3ab4_A 258 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVL 297 (421)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEE
T ss_pred EEeeCCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEE
Confidence 4555677788887 57889999999999999999887653
No 74
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=26.98 E-value=2e+02 Score=27.16 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=34.9
Q ss_pred EEEEcCeEEEEEE-ecCCCChHHHHHHHHHhcCcEEEEEEEE-ee--CCEEEEEEEE
Q 037798 606 VSIIESDALVELQ-CGNKEGLLLDIMQMLRELLIEVTAVQSF-LT--NGVFTAQLRA 658 (687)
Q Consensus 606 Vsi~e~dvlIeI~-C~~reglLl~Im~aLeeL~LdV~sVqsS-~~--dg~l~~tI~a 658 (687)
|....+.++|.|. -+.++|.+.+|+++|.+.++.|..+.-+ .. +|....+|..
T Consensus 10 Ia~~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv 66 (181)
T 3s1t_A 10 VAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTC 66 (181)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEE
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEE
Confidence 3344556667764 4578999999999999998887755322 22 4554444444
No 75
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.36 E-value=1e+02 Score=24.47 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 037798 490 ERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRKKIQDLESRN 541 (687)
Q Consensus 490 ER~RR~kin~~f~~LrsLvP~~~K~dKaSIL~~aI~YIk~Lq~~v~~Le~~~ 541 (687)
||++|.+...+..+-++ =..-.+|+..|+.+++.|+.++
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~n 39 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDEK 39 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666677665 2344678888888888888877
No 76
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=25.92 E-value=2e+02 Score=26.49 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=43.5
Q ss_pred EEEEEcCeEEEEEEecC---CCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHH
Q 037798 605 QVSIIESDALVELQCGN---KEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQI 681 (687)
Q Consensus 605 ~Vsi~e~dvlIeI~C~~---reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~i 681 (687)
.|.+.++-+.|.|.... ++|++.+++++|.+.|+.|.-+..| .-.+.+-| +.+ ..+...++|++.
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~S--e~~is~vv--~~~--------d~~~Av~~Lh~~ 155 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATS--EVRISVII--PAE--------YAEAALRAVHQA 155 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEEC--SSEEEEEE--EGG--------GHHHHHHHHHHH
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEcc--CCEEEEEE--eHH--------HHHHHHHHHHHH
Confidence 45555666678887764 8899999999999999999655433 33333222 222 256666777765
Q ss_pred hh
Q 037798 682 IP 683 (687)
Q Consensus 682 i~ 683 (687)
+-
T Consensus 156 f~ 157 (167)
T 2dt9_A 156 FE 157 (167)
T ss_dssp TC
T ss_pred Hc
Confidence 53
No 77
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=25.34 E-value=1.5e+02 Score=27.75 Aligned_cols=66 Identities=14% Similarity=0.256 Sum_probs=43.9
Q ss_pred EEEEcCeEEEEEEec---CCCChHHHHHHHHHhcCcEEEEEEEEeeCCEEEEEEEEEEccccCCcccCHHHHHHHHHHHh
Q 037798 606 VSIIESDALVELQCG---NKEGLLLDIMQMLRELLIEVTAVQSFLTNGVFTAQLRAKVKDNVNGKKASIVEVKRAINQII 682 (687)
Q Consensus 606 Vsi~e~dvlIeI~C~---~reglLl~Im~aLeeL~LdV~sVqsS~~dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii 682 (687)
|++.++-++|.|... .++|++.+++++|.+.++.|.-+. +..-.+.+.| .+ -..+...++|++.+
T Consensus 89 v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~Is~vV----~~------~d~~~Av~~Lh~~F 156 (178)
T 2dtj_A 89 VLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLI----RE------DDLDAAARALHEQF 156 (178)
T ss_dssp EEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEE----EG------GGHHHHHHHHHHHH
T ss_pred EEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEE----eH------HHHHHHHHHHHHHH
Confidence 455566678888776 567999999999999999987754 3333333322 21 23566667777665
Q ss_pred h
Q 037798 683 P 683 (687)
Q Consensus 683 ~ 683 (687)
.
T Consensus 157 ~ 157 (178)
T 2dtj_A 157 Q 157 (178)
T ss_dssp T
T ss_pred c
Confidence 3
No 78
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=23.94 E-value=3.6e+02 Score=28.33 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=45.4
Q ss_pred CCCChHHHHHHHHHhcCcEEEEEEEEeeC-CEEEEEEEEEEccccCCcccCHHHHHHHHHHHhhcc
Q 037798 621 NKEGLLLDIMQMLRELLIEVTAVQSFLTN-GVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIPQY 685 (687)
Q Consensus 621 ~reglLl~Im~aLeeL~LdV~sVqsS~~d-g~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~k~ 685 (687)
.++|.|.++|..|...|++.+...|--.. +..-|.|...+. |. ..-..|++||..+-..|
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e----g~-~~d~~v~~AL~~L~~~~ 277 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLD----AA-PWEERFRDALVEIAEHG 277 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEES----SC-TTSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEe----CC-cCCHHHHHHHHHHHHhC
Confidence 48999999999999999999999988654 455677888876 32 22356777877765443
No 79
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=21.97 E-value=1.6e+02 Score=30.06 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=45.5
Q ss_pred eEEEEEEe---cCCCChHHHHHHHHHhcCcEEEEEEEEeeCC-EEEEEEEEEEccccCCcccCHHHHHHHHHHHhhc
Q 037798 612 DALVELQC---GNKEGLLLDIMQMLRELLIEVTAVQSFLTNG-VFTAQLRAKVKDNVNGKKASIVEVKRAINQIIPQ 684 (687)
Q Consensus 612 dvlIeI~C---~~reglLl~Im~aLeeL~LdV~sVqsS~~dg-~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~k 684 (687)
...|-+.. +.++|.|.++|..+...|++.+...|--..+ ..-|.|...+. + ..-..|++||..+-..
T Consensus 186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~-----~~d~~v~~aL~~L~~~ 256 (267)
T 2qmw_A 186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S-----AITTDIKKVIAILETL 256 (267)
T ss_dssp CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C-----CSCHHHHHHHHHHHHT
T ss_pred eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c-----CCcHHHHHHHHHHHHh
Confidence 34555666 6899999999999999999999999886432 23344444443 2 1235677777666443
No 80
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=21.19 E-value=2.4e+02 Score=27.43 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=36.5
Q ss_pred EEEcCeEEEEEE-ecCCCChHHHHHHHHHhcCcEEEEEE--EEe-eCCEEEEEEEEEE
Q 037798 607 SIIESDALVELQ-CGNKEGLLLDIMQMLRELLIEVTAVQ--SFL-TNGVFTAQLRAKV 660 (687)
Q Consensus 607 si~e~dvlIeI~-C~~reglLl~Im~aLeeL~LdV~sVq--sS~-~dg~l~~tI~aKv 660 (687)
....+.+.|.|. .|.++|++.+|+.+|.+.++.|--+. +|. .++....+|...-
T Consensus 30 a~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~ 87 (200)
T 4go7_X 30 AHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR 87 (200)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG
T ss_pred EccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch
Confidence 345566677774 67899999999999999888765542 232 3455555555543
No 81
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.55 E-value=47 Score=24.85 Aligned_cols=17 Identities=35% Similarity=0.855 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhhh
Q 037798 525 EYVKQLRKKIQDLESRN 541 (687)
Q Consensus 525 ~YIk~Lq~~v~~Le~~~ 541 (687)
.|+.+|+.++++|+.++
T Consensus 3 aYl~eLE~r~k~le~~n 19 (42)
T 2oqq_A 3 AYLSELENRVKDLENKN 19 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 48888888888888777
No 82
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=20.34 E-value=1.8e+02 Score=30.41 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=45.2
Q ss_pred EEEEEEec-CCCChHHHHHHHHHhcCcEEEEEEEEee-CCEEEEEEEEEEccccCCcccCHHHHHHHHHHHhhc
Q 037798 613 ALVELQCG-NKEGLLLDIMQMLRELLIEVTAVQSFLT-NGVFTAQLRAKVKDNVNGKKASIVEVKRAINQIIPQ 684 (687)
Q Consensus 613 vlIeI~C~-~reglLl~Im~aLeeL~LdV~sVqsS~~-dg~l~~tI~aKv~en~~G~~~s~~eIkqAL~~ii~k 684 (687)
..|-+.-+ .++|.|.++|..|...|++.+.+.|--. .+..-|.|...+. |. ..-..+++||..+-..
T Consensus 202 TSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e----g~-~~d~~v~~aL~~L~~~ 270 (313)
T 3mwb_A 202 TTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDAD----GH-ATDSRVADALAGLHRI 270 (313)
T ss_dssp EEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEE----SC-TTSHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEe----CC-CCcHHHHHHHHHHHHh
Confidence 34455665 7999999999999999999999998753 3333345555555 22 2234567777665443
Done!