BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037799
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V7R|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Inhibitor
pdb|3V8J|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase
pdb|3V8K|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Biotin
pdb|3V8L|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Biotinyl-5'-Amp
Length = 329
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 8 NYLTVQPWTPSFDVNKTDMEQVNVWIRLPGLAVHLYNRK--ILQKLGEL--VGIVIRIDP 63
NY++ Q S ++++T +++V ++L G + N K +LQ+L ++ GI ID
Sbjct: 24 NYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQLPDIWYQGI---IDQ 80
Query: 64 HTASSARGRFARI-----AVRLSLDKPLV 87
+T SSA F+ + + +L+ K LV
Sbjct: 81 YTKSSALFDFSEVYDSIDSTQLAAKKSLV 109
>pdb|3V7C|A Chain A, Cystal Structure Of Sabpl In Complex With Inhibitor
pdb|3V7S|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Inhibitor 0364
Length = 329
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 8 NYLTVQPWTPSFDVNKTDMEQVNVWIRLPGLAVHLYNRK--ILQKLGEL--VGIVIRIDP 63
NY++ Q S ++++T +++V ++L G + N K +LQ+L ++ GI ID
Sbjct: 18 NYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQLPDIWYQGI---IDQ 74
Query: 64 HTASSARGRFARI-----AVRLSLDKPLV 87
+T SSA F+ + + +L+ K LV
Sbjct: 75 YTKSSALFDFSEVYDSIDSTQLAAKKSLV 103
>pdb|4DQ2|A Chain A, Structure Of Staphylococcus Aureus Biotin Protein Ligase
In Complex With Biotinol-5'-Amp
Length = 328
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 8 NYLTVQPWTPSFDVNKTDMEQVNVWIRLPGLAVHLYNRK--ILQKLGEL--VGIVIRIDP 63
NY++ Q S ++++T +++V ++L G + N K +LQ+L ++ GI ID
Sbjct: 17 NYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQLPDIWYQGI---IDQ 73
Query: 64 HTASSARGRFARI-----AVRLSLDKPLV 87
+T SSA F+ + + +L+ K LV
Sbjct: 74 YTKSSALFDFSEVYDSIDSTQLAAKKSLV 102
>pdb|3RIR|A Chain A, Crystal Strucrture Of Biotin Protein Ligase From S. Aureus
pdb|3RKW|A Chain A, Structural Characterisation Of Staphylococcus Aureus
Biotin Protein Ligase
pdb|3RKX|A Chain A, Structural Characterisation Of Staphylococcus Aureus
Biotin Protein Ligase
pdb|3RKY|A Chain A, Structural Characterisation Of Staphylococcus Aureus
Biotin Protein Ligase
Length = 323
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 8 NYLTVQPWTPSFDVNKTDMEQVNVWIRLPGLAVHLYNRK--ILQKLGEL--VGIVIRIDP 63
NY++ Q S ++++T +++V ++L G + N K +LQ+L ++ GI ID
Sbjct: 18 NYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQLPDIWYQGI---IDQ 74
Query: 64 HTASSARGRFARI-----AVRLSLDKPLV 87
+T SSA F+ + + +L+ K LV
Sbjct: 75 YTKSSALFDFSEVYDSIDSTQLAAKKSLV 103
>pdb|1ZTM|A Chain A, Structure Of The Uncleaved Paramyxovirus (hpiv3) Fusion
Protein
pdb|1ZTM|B Chain B, Structure Of The Uncleaved Paramyxovirus (hpiv3) Fusion
Protein
pdb|1ZTM|C Chain C, Structure Of The Uncleaved Paramyxovirus (hpiv3) Fusion
Protein
Length = 490
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 4 LTLNNYLTVQPWTPSFDVN--KTDMEQVNVWIR 34
+TLNN + + P S ++N K+D+E+ WIR
Sbjct: 425 ITLNNSVALDPIDISIELNKAKSDLEESKEWIR 457
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition
In The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 45 RKILQKLGELVGIVIRIDPHTASSARGRFARIAVRLSLDKPLVSQFVLDGKV 96
R+ K G + + I DP T S F S+D+ + +Q +LDGKV
Sbjct: 21 REYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKV 72
>pdb|3HDO|A Chain A, Crystal Structure Of A Histidinol-Phosphate
Aminotransferase From Geobacter Metallireducens
pdb|3HDO|B Chain B, Crystal Structure Of A Histidinol-Phosphate
Aminotransferase From Geobacter Metallireducens
Length = 360
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 13 QPWTPSFDVNKTDMEQVNVWIRLPGLAVHLYNRKILQKLGELVGIVIRIDP 63
P+ PS +V K +E++ G A+ +Y QKL E+ G + DP
Sbjct: 36 NPYPPSPEVVKAILEELGP----DGAALRIYPSASSQKLREVAGELYGFDP 82
>pdb|1GP1|A Chain A, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
pdb|1GP1|B Chain B, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
Length = 198
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 62 DPHTASSARGRFARIAVRLSLDKPLVSQFVLDGKVQK-VEYEGLPVICFTCGRYGH 116
+P SS RG+ I SL V + +Q+ + GL V+ F C ++GH
Sbjct: 24 EPFNLSSLRGKVLLIENVASLXGTTVRDYTQMNDLQRRLGPRGLVVLGFPCNQFGH 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,861,249
Number of Sequences: 62578
Number of extensions: 134894
Number of successful extensions: 437
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 10
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)