BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037799
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 6 LNNYLTVQPWTPSFDVNKTDMEQVNVWIRLPGLAVHLYNRKI---LQKLGELVGIVIRID 62
+N Y ++ + +N + +Q + + + GL+ + + L + GE+V I+ D
Sbjct: 4 MNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTD 63
Query: 63 PHTASSARGRFARIAVRLSLDKPL-VSQFVLDGKV 96
P T S F S+DK L + + LDGK+
Sbjct: 64 PVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKL 98
>sp|Q92QD0|DEFL_RHIME Peptide deformylase-like OS=Rhizobium meliloti (strain 1021)
GN=R01402 PE=3 SV=1
Length = 172
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 27/117 (23%)
Query: 36 PGLAVHLYNRKILQKLGELVGIVIRIDPHTASSA-----------------RGRFARIAV 78
PG+ + + ILQ+L VI +DP T + G + V
Sbjct: 43 PGIGITASHIGILQRL-----TVIEVDPQTGPRSFVNPEIVWQSSETAWHTEGSVSMPGV 97
Query: 79 RLSLDKPL---VSQFVLDGKVQKVEYEGLPVICF--TCGRYGHTFWTLDDSHEKRQK 130
+++P+ VS LDG+ ++ E EGL +C + FW S KR++
Sbjct: 98 AEEVERPVRVRVSFQTLDGETREEEAEGLMAVCLQHEIDQLNGIFWIRRLSRLKRER 154
>sp|A6TBH3|MDTA_KLEP7 Multidrug resistance protein MdtA OS=Klebsiella pneumoniae subsp.
pneumoniae (strain ATCC 700721 / MGH 78578) GN=mdtA PE=3
SV=1
Length = 412
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 37 GLAVHLYNRKILQKL--GELVGIVIRIDPHTAS-SARGRFARIAVRLSLDKPLVSQFVLD 93
L+V ++R QK+ GEL+ + +ID T + + RF+ + L ++ + ++ ++D
Sbjct: 256 ALSVEAWDRTNKQKISVGELLSLDNQIDATTGTIKLKARFSNLDDALFPNQFVNARLLVD 315
Query: 94 GKVQKVEYEGLPVICFTCGRYGHTFWTLDDSHE 126
+ V +P G GH W L+D ++
Sbjct: 316 TQQNAVV---IPAAALQMGNEGHFVWVLNDENK 345
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 6 LNNYLTVQPWTPSFDVNKTDMEQVNVWIRLPGLAVHLYNRKI---LQKLGELVGIVIRID 62
+N Y ++ + +N + +Q + + + GL+ + + L + GE+V I+ D
Sbjct: 123 MNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTD 182
Query: 63 PHTASSARGRFARIAVRLSLDKPL-VSQFVLDGKV 96
P T S F S+DK L + + LDGK+
Sbjct: 183 PVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKL 217
>sp|P24904|GB_ILTVT Envelope glycoprotein B OS=Infectious laryngotracheitis virus
(strain Thorne V882) GN=gB PE=3 SV=1
Length = 883
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 2 HFLTLNNYLTVQPWTPSFDVNKTDMEQVNVWIRLPG--------LAVHLYNRKILQKLGE 53
+FL NYL + +T VN +++E+V+++I L + V +Y R+ L+ G
Sbjct: 615 YFLLGENYLLYEDYTFVRQVNASEIEEVSIFINLNATILEDLDFVPVEVYTREELRDTGT 674
Query: 54 L 54
L
Sbjct: 675 L 675
>sp|Q02409|GB_ILTV6 Envelope glycoprotein B OS=Infectious laryngotracheitis virus
(strain 632) GN=gB PE=3 SV=2
Length = 873
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 2 HFLTLNNYLTVQPWTPSFDVNKTDMEQVNVWIRLPG--------LAVHLYNRKILQKLGE 53
+FL NYL + +T VN +++E+V+++I L + V +Y R+ L+ G
Sbjct: 605 YFLLGENYLLYEDYTFVRQVNASEIEEVSIFINLNATILEDLDFVPVEVYTREELRDTGT 664
Query: 54 L 54
L
Sbjct: 665 L 665
>sp|P0A0E7|DLDH_STAAW Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MW2)
GN=pdhD PE=3 SV=1
Length = 468
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 87 VSQFVLDGKVQKVEYEGLPVICFT 110
V+ +DG+ +V+Y G+P +CFT
Sbjct: 331 VAAEAIDGQAAEVDYIGMPAVCFT 354
>sp|P0A0E8|DLDH_STAAU Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus GN=pdhD PE=3
SV=1
Length = 468
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 87 VSQFVLDGKVQKVEYEGLPVICFT 110
V+ +DG+ +V+Y G+P +CFT
Sbjct: 331 VAAEAIDGQAAEVDYIGMPAVCFT 354
>sp|Q6GAB8|DLDH_STAAS Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain
MSSA476) GN=pdhD PE=3 SV=1
Length = 468
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 87 VSQFVLDGKVQKVEYEGLPVICFT 110
V+ +DG+ +V+Y G+P +CFT
Sbjct: 331 VAAEAIDGQAAEVDYIGMPAVCFT 354
>sp|Q6GHY9|DLDH_STAAR Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain
MRSA252) GN=pdhD PE=3 SV=1
Length = 468
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 87 VSQFVLDGKVQKVEYEGLPVICFT 110
V+ +DG+ +V+Y G+P +CFT
Sbjct: 331 VAAEAIDGQAAEVDYIGMPAVCFT 354
>sp|P99084|DLDH_STAAN Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain N315)
GN=pdhD PE=1 SV=1
Length = 468
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 87 VSQFVLDGKVQKVEYEGLPVICFT 110
V+ +DG+ +V+Y G+P +CFT
Sbjct: 331 VAAEAIDGQAAEVDYIGMPAVCFT 354
>sp|P0A0E6|DLDH_STAAM Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=pdhD PE=1 SV=1
Length = 468
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 87 VSQFVLDGKVQKVEYEGLPVICFT 110
V+ +DG+ +V+Y G+P +CFT
Sbjct: 331 VAAEAIDGQAAEVDYIGMPAVCFT 354
>sp|Q5HGY8|DLDH_STAAC Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain COL)
GN=pdhD PE=3 SV=1
Length = 468
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 87 VSQFVLDGKVQKVEYEGLPVICFT 110
V+ +DG+ +V+Y G+P +CFT
Sbjct: 331 VAAEAIDGQAAEVDYIGMPAVCFT 354
>sp|Q5UXX4|SYK_HALMA Lysine--tRNA ligase OS=Haloarcula marismortui (strain ATCC 43049 /
DSM 3752 / JCM 8966 / VKM B-1809) GN=lysS PE=3 SV=1
Length = 545
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 47 ILQKLGELVGIVIRIDPHTASSARGRFARIAVRLSLDKPLVSQFVLDGKVQKVEYEGLPV 106
+LQK ELVG+ + +T A G F + R+ L++ ++ VL KV+ + +P
Sbjct: 136 LLQKSAELVGVDVEFVSNTELYADGEFEAVTRRV-LERADRARDVLAEYQNKVDDDYVPF 194
Query: 107 I--CFTCGR 113
+ C CG+
Sbjct: 195 LPQCAECGK 203
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,120,369
Number of Sequences: 539616
Number of extensions: 1734327
Number of successful extensions: 5707
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5699
Number of HSP's gapped (non-prelim): 17
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)