Query 037799
Match_columns 131
No_of_seqs 113 out of 612
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 07:04:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nc8_A Nucleocapsid protein; H 96.7 0.00051 1.7E-08 35.1 0.9 20 105-124 6-25 (29)
2 1dsq_A Nucleic acid binding pr 96.6 0.00086 2.9E-08 33.4 1.7 19 106-124 3-21 (26)
3 1a6b_B Momulv, zinc finger pro 96.4 0.0011 3.7E-08 36.6 1.3 22 105-126 10-31 (40)
4 1u6p_A GAG polyprotein; MLV, A 96.1 0.0017 5.7E-08 38.4 1.1 23 105-127 23-45 (56)
5 2hqh_E Restin; beta/BETA struc 95.2 0.0061 2.1E-07 30.2 1.0 19 105-123 3-21 (26)
6 2ec7_A GAG polyprotein (PR55GA 94.9 0.011 3.9E-07 33.5 1.8 20 105-124 6-25 (49)
7 2ysa_A Retinoblastoma-binding 94.8 0.0076 2.6E-07 35.4 0.8 18 106-123 8-25 (55)
8 2ihx_A Nucleocapsid (NC) prote 94.5 0.015 5E-07 34.5 1.6 19 105-123 4-22 (61)
9 2a51_A Nucleocapsid protein; s 94.4 0.015 5.2E-07 31.3 1.4 18 107-124 2-19 (39)
10 2bl6_A Nucleocapsid protein P1 94.4 0.015 5.3E-07 30.9 1.4 17 107-123 2-18 (37)
11 2a51_A Nucleocapsid protein; s 94.3 0.016 5.4E-07 31.2 1.3 18 106-123 22-39 (39)
12 2bl6_A Nucleocapsid protein P1 94.2 0.015 5.2E-07 30.9 1.1 19 105-123 19-37 (37)
13 1a1t_A Nucleocapsid protein; s 94.1 0.019 6.4E-07 33.2 1.4 19 105-123 12-30 (55)
14 3nyb_B Protein AIR2; polya RNA 93.7 0.023 7.7E-07 36.0 1.3 20 105-124 46-65 (83)
15 2cqf_A RNA-binding protein LIN 93.4 0.029 1E-06 33.4 1.4 19 105-123 7-25 (63)
16 2ec7_A GAG polyprotein (PR55GA 93.0 0.03 1E-06 31.7 1.0 18 106-123 28-45 (49)
17 3nyb_B Protein AIR2; polya RNA 93.0 0.023 7.9E-07 35.9 0.5 20 105-124 5-24 (83)
18 2li8_A Protein LIN-28 homolog 92.9 0.035 1.2E-06 34.3 1.3 20 104-123 23-42 (74)
19 2ihx_A Nucleocapsid (NC) prote 92.7 0.043 1.5E-06 32.4 1.4 20 105-124 30-49 (61)
20 1cl4_A Protein (GAG polyprotei 92.5 0.023 7.9E-07 33.4 0.0 18 107-124 3-20 (60)
21 1a1t_A Nucleocapsid protein; s 92.1 0.047 1.6E-06 31.4 1.0 18 106-123 34-51 (55)
22 1cl4_A Protein (GAG polyprotei 91.9 0.059 2E-06 31.6 1.3 22 104-125 29-50 (60)
23 2cqf_A RNA-binding protein LIN 91.3 0.073 2.5E-06 31.6 1.3 21 105-125 29-49 (63)
24 3ts2_A Protein LIN-28 homolog 90.0 0.088 3E-06 36.6 0.9 19 106-124 98-116 (148)
25 2li8_A Protein LIN-28 homolog 89.5 0.12 4.2E-06 31.8 1.2 21 105-125 46-66 (74)
26 3ts2_A Protein LIN-28 homolog 87.9 0.17 5.8E-06 35.1 1.2 21 105-125 119-139 (148)
27 2lli_A Protein AIR2; RNA surve 86.5 0.26 9E-06 32.8 1.5 20 104-123 104-123 (124)
28 2pzo_E CAP-Gly domain-containi 86.3 0.24 8.1E-06 27.1 1.0 19 105-123 20-38 (42)
29 2lli_A Protein AIR2; RNA surve 83.5 0.43 1.5E-05 31.7 1.4 20 106-125 65-84 (124)
30 3e2u_E CAP-Gly domain-containi 78.2 0.75 2.6E-05 25.2 1.0 19 105-123 20-38 (42)
31 1ef4_A Subunit N, DNA-directed 70.3 1.3 4.5E-05 25.7 0.7 14 104-117 2-16 (55)
32 4ayb_N DNA-directed RNA polyme 69.1 1.5 5.3E-05 26.3 0.9 14 104-117 3-17 (66)
33 1twf_J DNA-directed RNA polyme 66.2 1.9 6.5E-05 26.2 0.9 14 104-117 3-17 (70)
34 2jmo_A Parkin; IBR, E3 ligase, 53.4 4.7 0.00016 24.6 1.1 19 105-124 58-76 (80)
35 3alr_A Nanos protein; zinc-fin 33.6 23 0.0008 23.0 2.0 20 106-125 72-94 (106)
36 2yqp_A Probable ATP-dependent 30.7 14 0.00048 21.5 0.5 12 106-117 20-31 (60)
37 1wwh_A Nucleoporin 35, nucleop 30.5 62 0.0021 21.3 3.8 34 28-63 22-55 (119)
38 2kwq_A Protein MCM10 homolog; 30.3 20 0.00067 22.8 1.3 18 98-115 57-75 (92)
39 2row_A RHO-associated protein 30.0 44 0.0015 20.6 2.8 25 90-114 20-44 (84)
40 2w0t_A Lethal(3)malignant brai 29.8 16 0.00053 20.0 0.6 16 105-120 6-21 (43)
41 3bs9_A Nucleolysin TIA-1 isofo 26.6 70 0.0024 18.3 3.4 30 33-63 9-38 (87)
42 3mdf_A Peptidyl-prolyl CIS-tra 26.5 70 0.0024 18.2 3.3 30 33-63 10-39 (85)
43 3kj0_B BCL-2-like protein 11; 25.9 51 0.0017 15.8 2.0 19 37-55 3-21 (27)
44 1x4a_A Splicing factor, argini 25.8 76 0.0026 19.2 3.5 31 35-66 27-57 (109)
45 2cqc_A Arginine/serine-rich sp 25.0 63 0.0021 18.9 2.9 28 35-63 20-47 (95)
46 2ghp_A U4/U6 snRNA-associated 24.9 73 0.0025 22.9 3.8 62 4-65 183-245 (292)
47 2cpf_A RNA binding motif prote 24.5 72 0.0025 18.8 3.2 30 34-64 9-38 (98)
48 1hp9_A Kappa-hefutoxin 1; scor 24.2 8.6 0.00029 18.3 -1.0 15 108-122 4-19 (26)
49 1why_A Hypothetical protein ri 23.7 73 0.0025 18.8 3.1 31 35-66 22-52 (97)
50 3s7r_A Heterogeneous nuclear r 23.5 68 0.0023 18.4 2.9 29 34-63 15-43 (87)
51 1l3k_A Heterogeneous nuclear r 23.3 1.1E+02 0.0036 20.2 4.2 59 5-64 79-137 (196)
52 1jyo_A SICP; bacterial pathoge 23.3 27 0.00093 23.4 1.0 22 44-65 4-25 (130)
53 2lxi_A RNA-binding protein 10; 23.1 23 0.00077 21.3 0.5 65 33-103 4-81 (91)
54 2ywk_A Putative RNA-binding pr 23.1 87 0.003 18.2 3.3 30 34-64 20-49 (95)
55 1qd1_A Formiminotransferase-cy 22.9 25 0.00085 27.4 0.8 42 13-55 155-202 (325)
56 3j20_Y 30S ribosomal protein S 22.4 25 0.00087 19.5 0.6 12 102-113 16-27 (50)
57 2krb_A Eukaryotic translation 21.8 44 0.0015 19.2 1.7 30 35-64 6-40 (81)
58 2ytc_A PRE-mRNA-splicing facto 21.5 93 0.0032 17.7 3.2 30 35-65 17-46 (85)
59 1znf_A 31ST zinc finger from X 21.3 28 0.00096 14.7 0.6 10 105-114 1-10 (27)
60 2dnz_A Probable RNA-binding pr 21.1 87 0.003 18.2 3.0 31 34-65 9-39 (95)
61 1tt9_A Formimidoyltransferase- 21.1 46 0.0016 27.7 2.1 44 13-57 156-205 (541)
62 2wh6_B BCL-2-like protein 11; 20.9 71 0.0024 15.2 1.9 20 37-56 1-20 (26)
63 2kvh_A Zinc finger and BTB dom 20.5 27 0.00094 14.9 0.4 11 105-115 3-13 (27)
64 1paa_A Yeast transcription fac 20.4 31 0.0011 14.9 0.6 10 105-114 2-11 (30)
65 1fje_B Nucleolin RBD12, protei 20.3 53 0.0018 21.5 2.0 53 4-61 77-129 (175)
66 2dnp_A RNA-binding protein 14; 20.3 97 0.0033 17.9 3.1 30 35-65 14-43 (90)
67 2dgu_A Heterogeneous nuclear r 20.3 93 0.0032 18.6 3.1 29 35-64 16-44 (103)
No 1
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=96.65 E-value=0.00051 Score=35.09 Aligned_cols=20 Identities=25% Similarity=0.685 Sum_probs=17.6
Q ss_pred ccccccccccccCcCcCCCc
Q 037799 105 PVICFTCGRYGHTFWTLDDS 124 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~~ 124 (131)
...||+||..||..++|+.+
T Consensus 6 ~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSS
T ss_pred CCEEEECCccccCHhHCccc
Confidence 35699999999999999865
No 2
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=96.64 E-value=0.00086 Score=33.39 Aligned_cols=19 Identities=32% Similarity=0.863 Sum_probs=17.2
Q ss_pred cccccccccccCcCcCCCc
Q 037799 106 VICFTCGRYGHTFWTLDDS 124 (131)
Q Consensus 106 ~~C~~Cg~~GH~~~~C~~~ 124 (131)
..||.||..||..+.|+..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 5699999999999999864
No 3
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=96.41 E-value=0.0011 Score=36.56 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=18.9
Q ss_pred ccccccccccccCcCcCCCchh
Q 037799 105 PVICFTCGRYGHTFWTLDDSHE 126 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~~~~ 126 (131)
..-|++||..||-...|+....
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~~ 31 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSCC
T ss_pred CCeeeECCCCCcchhhCcCCcc
Confidence 3589999999999999997643
No 4
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=96.11 E-value=0.0017 Score=38.38 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=19.6
Q ss_pred ccccccccccccCcCcCCCchhh
Q 037799 105 PVICFTCGRYGHTFWTLDDSHEK 127 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~~~~~ 127 (131)
..-|++||..||-...|+....+
T Consensus 23 ~~~C~~Cge~GH~ardCp~~~~~ 45 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPKKPRG 45 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTTCCCS
T ss_pred CCcceeCCCCCcccccCcCCccc
Confidence 45799999999999999976544
No 5
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=95.19 E-value=0.0061 Score=30.18 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=16.8
Q ss_pred ccccccccccccCcCcCCC
Q 037799 105 PVICFTCGRYGHTFWTLDD 123 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~ 123 (131)
.++|-.|..+||...+|+.
T Consensus 3 RpYCe~CE~FGH~t~~C~d 21 (26)
T 2hqh_E 3 RPYCEICEMFGHWATNCND 21 (26)
T ss_dssp -CEETTTTEESSCGGGCCT
T ss_pred CccchHHHHhCcccccCCc
Confidence 4689999999999999975
No 6
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=94.94 E-value=0.011 Score=33.49 Aligned_cols=20 Identities=25% Similarity=0.685 Sum_probs=14.1
Q ss_pred ccccccccccccCcCcCCCc
Q 037799 105 PVICFTCGRYGHTFWTLDDS 124 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~~ 124 (131)
+..|+.||..||...+|+..
T Consensus 6 ~~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 6 VIRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CCBCTTTCCBTCCTTTCCCS
T ss_pred cCeeeecCCCCcChhhCcCC
Confidence 45677777777777777653
No 7
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.83 E-value=0.0076 Score=35.36 Aligned_cols=18 Identities=33% Similarity=0.755 Sum_probs=16.4
Q ss_pred cccccccccccCcCcCCC
Q 037799 106 VICFTCGRYGHTFWTLDD 123 (131)
Q Consensus 106 ~~C~~Cg~~GH~~~~C~~ 123 (131)
..|+.||..||-.++|+.
T Consensus 8 ~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp CCCTTTCCTTSCGGGCSG
T ss_pred CccccCCCcCcccccCCC
Confidence 479999999999999984
No 8
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=94.50 E-value=0.015 Score=34.52 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=10.0
Q ss_pred ccccccccccccCcCcCCC
Q 037799 105 PVICFTCGRYGHTFWTLDD 123 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~ 123 (131)
+..||.||..||....|+.
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~ 22 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPK 22 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTT
T ss_pred CCcccccCCCCeehhhCcC
Confidence 3445555555555555543
No 9
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=94.43 E-value=0.015 Score=31.30 Aligned_cols=18 Identities=39% Similarity=0.855 Sum_probs=15.5
Q ss_pred ccccccccccCcCcCCCc
Q 037799 107 ICFTCGRYGHTFWTLDDS 124 (131)
Q Consensus 107 ~C~~Cg~~GH~~~~C~~~ 124 (131)
.|++||..||...+|+..
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 589999999999999854
No 10
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=94.39 E-value=0.015 Score=30.90 Aligned_cols=17 Identities=29% Similarity=0.731 Sum_probs=14.1
Q ss_pred ccccccccccCcCcCCC
Q 037799 107 ICFTCGRYGHTFWTLDD 123 (131)
Q Consensus 107 ~C~~Cg~~GH~~~~C~~ 123 (131)
.|++||..||...+|+.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 58888888888888875
No 11
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=94.30 E-value=0.016 Score=31.24 Aligned_cols=18 Identities=28% Similarity=0.587 Sum_probs=16.5
Q ss_pred cccccccccccCcCcCCC
Q 037799 106 VICFTCGRYGHTFWTLDD 123 (131)
Q Consensus 106 ~~C~~Cg~~GH~~~~C~~ 123 (131)
..|+.||..||..+.|+.
T Consensus 22 ~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 22 EGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp SSCTTTCCSSSCTTTSCC
T ss_pred CccccCCCCCCccCcCcC
Confidence 589999999999999974
No 12
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=94.18 E-value=0.015 Score=30.93 Aligned_cols=19 Identities=32% Similarity=0.688 Sum_probs=16.8
Q ss_pred ccccccccccccCcCcCCC
Q 037799 105 PVICFTCGRYGHTFWTLDD 123 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~ 123 (131)
+..|+.||..||..+.|+.
T Consensus 19 ~~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 19 PKVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp BTTCSSCCCTTGGGGTTCC
T ss_pred cCeEccCCCcCCccCcCcC
Confidence 4689999999999999973
No 13
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=94.07 E-value=0.019 Score=33.19 Aligned_cols=19 Identities=37% Similarity=0.756 Sum_probs=13.3
Q ss_pred ccccccccccccCcCcCCC
Q 037799 105 PVICFTCGRYGHTFWTLDD 123 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~ 123 (131)
+..|+.||..||....|+.
T Consensus 12 ~~~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 12 TVKCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp TCBCTTTCCBSSCGGGCSS
T ss_pred CcceeeeCCCCcChhhcCC
Confidence 4567777777777777764
No 14
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=93.67 E-value=0.023 Score=35.97 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=17.9
Q ss_pred ccccccccccccCcCcCCCc
Q 037799 105 PVICFTCGRYGHTFWTLDDS 124 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~~ 124 (131)
..+|++||.-||..++|+..
T Consensus 46 ~~~CYnCG~~GH~~rdC~~~ 65 (83)
T 3nyb_B 46 TIYCYNCGGKGHFGDDCKEK 65 (83)
T ss_dssp CCBCSSSSCBSSCGGGCSSC
T ss_pred CCeecccCCCCcCcccCCcc
Confidence 37999999999999999954
No 15
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.35 E-value=0.029 Score=33.44 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=12.9
Q ss_pred ccccccccccccCcCcCCC
Q 037799 105 PVICFTCGRYGHTFWTLDD 123 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~ 123 (131)
+..||+||..||...+|+.
T Consensus 7 ~~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 7 GDRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCCSSSCCSSSCTTTCCS
T ss_pred CCcccccCCCCcChhhCCC
Confidence 3467777777777777763
No 16
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=92.99 E-value=0.03 Score=31.67 Aligned_cols=18 Identities=28% Similarity=0.728 Sum_probs=16.6
Q ss_pred cccccccccccCcCcCCC
Q 037799 106 VICFTCGRYGHTFWTLDD 123 (131)
Q Consensus 106 ~~C~~Cg~~GH~~~~C~~ 123 (131)
..|+.||..||....|+.
T Consensus 28 ~~C~~Cg~~GH~~~~C~~ 45 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPE 45 (49)
T ss_dssp CSCSSSCCSSCCGGGCCS
T ss_pred CeeCcCCCcCCccCCCcC
Confidence 579999999999999985
No 17
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=92.95 E-value=0.023 Score=35.93 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=16.7
Q ss_pred ccccccccccccCcCcCCCc
Q 037799 105 PVICFTCGRYGHTFWTLDDS 124 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~~ 124 (131)
...|+.||..||..+.|+.+
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG
T ss_pred cCCCCCCCCCCCccccCCCc
Confidence 45799999999999999865
No 18
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=92.90 E-value=0.035 Score=34.28 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.4
Q ss_pred CccccccccccccCcCcCCC
Q 037799 104 LPVICFTCGRYGHTFWTLDD 123 (131)
Q Consensus 104 lp~~C~~Cg~~GH~~~~C~~ 123 (131)
.+..||+||..||....|+.
T Consensus 23 r~~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCSS
T ss_pred CCCcccccCCcCcCcccCCC
Confidence 45679999999999999974
No 19
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=92.65 E-value=0.043 Score=32.41 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=17.6
Q ss_pred ccccccccccccCcCcCCCc
Q 037799 105 PVICFTCGRYGHTFWTLDDS 124 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~~ 124 (131)
...|+.||..||....|+..
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~ 49 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKR 49 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCC
T ss_pred CCeeCCCCCCCCCcCCCcCC
Confidence 35799999999999999864
No 20
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=92.47 E-value=0.023 Score=33.38 Aligned_cols=18 Identities=33% Similarity=0.778 Sum_probs=0.0
Q ss_pred ccccccccccCcCcCCCc
Q 037799 107 ICFTCGRYGHTFWTLDDS 124 (131)
Q Consensus 107 ~C~~Cg~~GH~~~~C~~~ 124 (131)
.||.||..||...+|+..
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~ 20 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEH 20 (60)
T ss_dssp ------------------
T ss_pred ccccCCCCCcCHhhCcCC
Confidence 477777777777777643
No 21
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=92.05 E-value=0.047 Score=31.44 Aligned_cols=18 Identities=28% Similarity=0.722 Sum_probs=16.6
Q ss_pred cccccccccccCcCcCCC
Q 037799 106 VICFTCGRYGHTFWTLDD 123 (131)
Q Consensus 106 ~~C~~Cg~~GH~~~~C~~ 123 (131)
..|+.||..||....|+.
T Consensus 34 ~~C~~Cg~~GH~~~~C~~ 51 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTE 51 (55)
T ss_dssp CBCTTTCCBSSCGGGCSS
T ss_pred CEeCCCCCcCCccCCCcC
Confidence 579999999999999985
No 22
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=91.88 E-value=0.059 Score=31.57 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.0
Q ss_pred CccccccccccccCcCcCCCch
Q 037799 104 LPVICFTCGRYGHTFWTLDDSH 125 (131)
Q Consensus 104 lp~~C~~Cg~~GH~~~~C~~~~ 125 (131)
....|+.||..||..+.|+...
T Consensus 29 ~~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 29 VPGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CCCSCSSCSSCSSCSTTCCCTT
T ss_pred CCcceeECCCCCCccCcCCCcc
Confidence 3568999999999999999654
No 23
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.32 E-value=0.073 Score=31.64 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.4
Q ss_pred ccccccccccccCcCcCCCch
Q 037799 105 PVICFTCGRYGHTFWTLDDSH 125 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~~~ 125 (131)
+..|+.||..||....|+...
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp~~~ 49 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCPLKA 49 (63)
T ss_dssp SSCCTTTCCSSSCTTTCTGGG
T ss_pred CCccCCcCCcCCccCcCCCcc
Confidence 568999999999999998643
No 24
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=90.01 E-value=0.088 Score=36.59 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=16.8
Q ss_pred cccccccccccCcCcCCCc
Q 037799 106 VICFTCGRYGHTFWTLDDS 124 (131)
Q Consensus 106 ~~C~~Cg~~GH~~~~C~~~ 124 (131)
..|++||..||...+|+..
T Consensus 98 ~~C~~Cg~~GH~a~~C~~~ 116 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKLP 116 (148)
T ss_dssp CCCTTTCCSSCCGGGCCSC
T ss_pred CcccEeCCccchhhhCCCC
Confidence 3699999999999999863
No 25
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=89.50 E-value=0.12 Score=31.78 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.4
Q ss_pred ccccccccccccCcCcCCCch
Q 037799 105 PVICFTCGRYGHTFWTLDDSH 125 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~~~ 125 (131)
+..|+.||..||....|+...
T Consensus 46 ~~~C~~Cg~~GH~ar~Cp~~~ 66 (74)
T 2li8_A 46 PKKCHFCQSISHMVASCPLKA 66 (74)
T ss_dssp CCCCTTTCCTTSCGGGCTTGG
T ss_pred CCccCCcCCcCCccCcCcCCc
Confidence 468999999999999998653
No 26
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=87.87 E-value=0.17 Score=35.12 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.5
Q ss_pred ccccccccccccCcCcCCCch
Q 037799 105 PVICFTCGRYGHTFWTLDDSH 125 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~~~ 125 (131)
+..|+.||..||....|+...
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~~ 139 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLKA 139 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTTT
T ss_pred CCcccccCCcCCEeccCcCCC
Confidence 568999999999999999653
No 27
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=86.49 E-value=0.26 Score=32.75 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=17.8
Q ss_pred CccccccccccccCcCcCCC
Q 037799 104 LPVICFTCGRYGHTFWTLDD 123 (131)
Q Consensus 104 lp~~C~~Cg~~GH~~~~C~~ 123 (131)
-...|++||..||..+.|+.
T Consensus 104 ~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 104 HTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCCTTTTSSSCTTTTTSCC
T ss_pred CCCCcCCCCCCCcCcccCcC
Confidence 35799999999999999985
No 28
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=86.31 E-value=0.24 Score=27.12 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=16.6
Q ss_pred ccccccccccccCcCcCCC
Q 037799 105 PVICFTCGRYGHTFWTLDD 123 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~ 123 (131)
..+|-.|..+||...+|+.
T Consensus 20 RpYCd~CEvFGH~t~~Cnd 38 (42)
T 2pzo_E 20 RPYCEICEMFGHWATNCND 38 (42)
T ss_dssp -CEETTTTEESSCGGGCCT
T ss_pred CcccccccccCcccccCCc
Confidence 3689999999999999974
No 29
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=83.48 E-value=0.43 Score=31.71 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=17.4
Q ss_pred cccccccccccCcCcCCCch
Q 037799 106 VICFTCGRYGHTFWTLDDSH 125 (131)
Q Consensus 106 ~~C~~Cg~~GH~~~~C~~~~ 125 (131)
..|+.||..||..+.|+...
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~~~ 84 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPSIW 84 (124)
T ss_dssp CSSSSSCSSCCCTTTCCCST
T ss_pred ccCCCCCcCCcchhhCCCcc
Confidence 57999999999999999764
No 30
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=78.15 E-value=0.75 Score=25.18 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=17.5
Q ss_pred ccccccccccccCcCcCCC
Q 037799 105 PVICFTCGRYGHTFWTLDD 123 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~ 123 (131)
..+|-.|-.+||...+|..
T Consensus 20 RpYCe~CEVFGH~t~eC~d 38 (42)
T 3e2u_E 20 RPYCEICEMFGHWATNCND 38 (42)
T ss_dssp CCEETTTTEESSCGGGCCT
T ss_pred CcccccceecccccccCCc
Confidence 5799999999999999985
No 31
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=70.28 E-value=1.3 Score=25.68 Aligned_cols=14 Identities=36% Similarity=0.994 Sum_probs=10.6
Q ss_pred Ccccccccccc-ccC
Q 037799 104 LPVICFTCGRY-GHT 117 (131)
Q Consensus 104 lp~~C~~Cg~~-GH~ 117 (131)
+|-.||.||++ ||.
T Consensus 2 iPVRCFTCGkvi~~~ 16 (55)
T 1ef4_A 2 IPVRCLSCGKPVSAY 16 (55)
T ss_dssp CSSSCSCTTSCCHHH
T ss_pred CCeecCCCCCChhHH
Confidence 58899999974 443
No 32
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=69.10 E-value=1.5 Score=26.33 Aligned_cols=14 Identities=43% Similarity=1.213 Sum_probs=10.7
Q ss_pred Ccccccccccc-ccC
Q 037799 104 LPVICFTCGRY-GHT 117 (131)
Q Consensus 104 lp~~C~~Cg~~-GH~ 117 (131)
+|-.||.||++ ||.
T Consensus 3 IPVRCFTCGkvi~~k 17 (66)
T 4ayb_N 3 IPIRCFTCGSLIADK 17 (66)
T ss_dssp CCSBCTTTCCBCHHH
T ss_pred CCcccCCCcHhHHHH
Confidence 68899999974 443
No 33
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=66.18 E-value=1.9 Score=26.22 Aligned_cols=14 Identities=50% Similarity=1.360 Sum_probs=10.8
Q ss_pred Ccccccccccc-ccC
Q 037799 104 LPVICFTCGRY-GHT 117 (131)
Q Consensus 104 lp~~C~~Cg~~-GH~ 117 (131)
+|-.||.||++ ||.
T Consensus 3 iPVRCFTCGkvi~~~ 17 (70)
T 1twf_J 3 VPVRCFSCGKVVGDK 17 (70)
T ss_dssp CCSBCTTTCCBCTTC
T ss_pred CCeecCCCCCChHHH
Confidence 58899999974 553
No 34
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=53.39 E-value=4.7 Score=24.60 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=16.9
Q ss_pred ccccccccccccCcCcCCCc
Q 037799 105 PVICFTCGRYGHTFWTLDDS 124 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~C~~~ 124 (131)
..||+.|+.--|. ..|..+
T Consensus 58 ~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 58 FAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp CCEETTTTEECCS-SCSSSC
T ss_pred CeeccccCccccC-Cccccc
Confidence 4699999999999 999876
No 35
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=33.60 E-value=23 Score=22.97 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=16.1
Q ss_pred cccccccccc---cCcCcCCCch
Q 037799 106 VICFTCGRYG---HTFWTLDDSH 125 (131)
Q Consensus 106 ~~C~~Cg~~G---H~~~~C~~~~ 125 (131)
..|-.||--| |+.+.|+...
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~ 94 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVD 94 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCG
T ss_pred ccCCCCCCcCCcccceecCCCCC
Confidence 3688888777 9999999765
No 36
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.69 E-value=14 Score=21.51 Aligned_cols=12 Identities=58% Similarity=1.373 Sum_probs=10.1
Q ss_pred cccccccccccC
Q 037799 106 VICFTCGRYGHT 117 (131)
Q Consensus 106 ~~C~~Cg~~GH~ 117 (131)
+.|-.||++|-.
T Consensus 20 PvCvvCGryGeY 31 (60)
T 2yqp_A 20 PICVVCGRYGEY 31 (60)
T ss_dssp CCCSSSSSCCSE
T ss_pred ceEEEecCccce
Confidence 579999999964
No 37
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=30.48 E-value=62 Score=21.33 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=26.5
Q ss_pred eeeeeeecCCCchhhhhHHHHHHHHhhcceEEEEec
Q 037799 28 QVNVWIRLPGLAVHLYNRKILQKLGELVGIVIRIDP 63 (131)
Q Consensus 28 ~~~vWVri~~lP~~~~~~~~~~~i~~~iG~~l~vD~ 63 (131)
.-+-||-++|.|..- ...+++.+. .+|++++...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~-~~G~Iv~~~~ 55 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFA-QYGNILKHVM 55 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHH-TTSCEEEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHH-hhCcEEEecc
Confidence 347899999999984 445666665 4999999887
No 38
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=30.34 E-value=20 Score=22.76 Aligned_cols=18 Identities=33% Similarity=0.813 Sum_probs=15.0
Q ss_pred EEEEccCcc-ccccccccc
Q 037799 98 KVEYEGLPV-ICFTCGRYG 115 (131)
Q Consensus 98 ~v~YE~lp~-~C~~Cg~~G 115 (131)
.+.|+++|. -|.+||..-
T Consensus 57 t~sl~r~P~~~C~~Cg~~~ 75 (92)
T 2kwq_A 57 TISLDRLPKKHCSTCGLFK 75 (92)
T ss_dssp EEESSSSCCSCCTTTCSCC
T ss_pred eeEeeeCCCCCCCCCCCCc
Confidence 566799999 999999763
No 39
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=30.01 E-value=44 Score=20.62 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=19.0
Q ss_pred EEEcCeEeEEEEccCcccccccccc
Q 037799 90 FVLDGKVQKVEYEGLPVICFTCGRY 114 (131)
Q Consensus 90 v~i~g~~~~v~YE~lp~~C~~Cg~~ 114 (131)
+...|..+....=..|.||.+|+.+
T Consensus 20 ~~~~~H~F~~~~~~~PT~Cd~C~~~ 44 (84)
T 2row_A 20 ICHKGHEFIPTLYHFPTNCEACMKP 44 (84)
T ss_dssp EEETTEEEEEECCSSCEECSSSSSE
T ss_pred EEcCCcceEeEcCCCCcchhhcCHh
Confidence 3456777777777799999999753
No 40
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=29.80 E-value=16 Score=19.99 Aligned_cols=16 Identities=31% Similarity=0.600 Sum_probs=12.5
Q ss_pred ccccccccccccCcCc
Q 037799 105 PVICFTCGRYGHTFWT 120 (131)
Q Consensus 105 p~~C~~Cg~~GH~~~~ 120 (131)
...|-.||.+||....
T Consensus 6 ~~~CE~CG~~g~~~~F 21 (43)
T 2w0t_A 6 PAVCEMCGIVGTREAF 21 (43)
T ss_dssp EEECTTTCCEEETTTS
T ss_pred eehhhhhcCcchhhhh
Confidence 3479999999987654
No 41
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=26.65 E-value=70 Score=18.27 Aligned_cols=30 Identities=7% Similarity=-0.017 Sum_probs=23.1
Q ss_pred eecCCCchhhhhHHHHHHHHhhcceEEEEec
Q 037799 33 IRLPGLAVHLYNRKILQKLGELVGIVIRIDP 63 (131)
Q Consensus 33 Vri~~lP~~~~~~~~~~~i~~~iG~~l~vD~ 63 (131)
|-+-|||.. .+++-++.+-+..|.+..+..
T Consensus 9 l~v~nlp~~-~t~~~l~~~F~~~G~i~~v~i 38 (87)
T 3bs9_A 9 VFVGDLSPE-ITTAAIAAAFAPFGRISDARV 38 (87)
T ss_dssp EEEESCCTT-CCHHHHHHHHGGGSCEEEEEE
T ss_pred EEEeCCCCC-CCHHHHHHHHHhcCCEeEEEE
Confidence 345799987 677778888889999877654
No 42
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=26.53 E-value=70 Score=18.17 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=23.7
Q ss_pred eecCCCchhhhhHHHHHHHHhhcceEEEEec
Q 037799 33 IRLPGLAVHLYNRKILQKLGELVGIVIRIDP 63 (131)
Q Consensus 33 Vri~~lP~~~~~~~~~~~i~~~iG~~l~vD~ 63 (131)
|.+-|||.. .+++-++.+-+..|.+..+..
T Consensus 10 l~V~nl~~~-~~~~~l~~~f~~~G~i~~v~i 39 (85)
T 3mdf_A 10 LYVGGLAEE-VDDKVLHAAFIPFGDITDIQI 39 (85)
T ss_dssp EEEECCCTT-CCHHHHHHHHGGGSCEEEEEC
T ss_pred EEEECCCCC-CCHHHHHHHHhccCCEEEEEE
Confidence 446799976 577788888899999988765
No 43
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=25.86 E-value=51 Score=15.82 Aligned_cols=19 Identities=16% Similarity=0.378 Sum_probs=15.4
Q ss_pred CCchhhhhHHHHHHHHhhc
Q 037799 37 GLAVHLYNRKILQKLGELV 55 (131)
Q Consensus 37 ~lP~~~~~~~~~~~i~~~i 55 (131)
|++.++|-..-++.||...
T Consensus 3 ~~~PE~wiAqELRRIGDeF 21 (27)
T 3kj0_B 3 GGRPEIWYAQELRRIGDEF 21 (27)
T ss_dssp -CCHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHH
Confidence 6788999999999998754
No 44
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.83 E-value=76 Score=19.22 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=24.1
Q ss_pred cCCCchhhhhHHHHHHHHhhcceEEEEecCCC
Q 037799 35 LPGLAVHLYNRKILQKLGELVGIVIRIDPHTA 66 (131)
Q Consensus 35 i~~lP~~~~~~~~~~~i~~~iG~~l~vD~~t~ 66 (131)
|-|||... +++-++.+-+..|.+..+.....
T Consensus 27 V~nLp~~~-t~~~l~~~F~~~G~v~~~~i~~~ 57 (109)
T 1x4a_A 27 VGNLPPDI-RTKDIEDVFYKYGAIRDIDLKNR 57 (109)
T ss_dssp EESCCTTC-CHHHHHHHHGGGSCEEEEEECCS
T ss_pred EeCCCCCC-CHHHHHHHHHhcCCeEEEEEEEC
Confidence 46999865 77778888899999987776543
No 45
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.03 E-value=63 Score=18.86 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=22.0
Q ss_pred cCCCchhhhhHHHHHHHHhhcceEEEEec
Q 037799 35 LPGLAVHLYNRKILQKLGELVGIVIRIDP 63 (131)
Q Consensus 35 i~~lP~~~~~~~~~~~i~~~iG~~l~vD~ 63 (131)
|-|||.. .+++-++.+-+..|.+..+..
T Consensus 20 v~nlp~~-~t~~~l~~~f~~~G~v~~v~i 47 (95)
T 2cqc_A 20 VFGLSLY-TTERDLREVFSKYGPIADVSI 47 (95)
T ss_dssp EESCCSS-CCHHHHHHHHHTTSCEEEEEE
T ss_pred EECCCCC-CCHHHHHHHHHhcCCeeEEEE
Confidence 4699987 567778888899999876654
No 46
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=24.92 E-value=73 Score=22.90 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=37.2
Q ss_pred eeeCceEEEEeecCCCCCCcc-CcceeeeeeecCCCchhhhhHHHHHHHHhhcceEEEEecCC
Q 037799 4 LTLNNYLTVQPWTPSFDVNKT-DMEQVNVWIRLPGLAVHLYNRKILQKLGELVGIVIRIDPHT 65 (131)
Q Consensus 4 ~f~~~~l~l~~w~~~~~~~~~-~~~~~~vWVri~~lP~~~~~~~~~~~i~~~iG~~l~vD~~t 65 (131)
.++|..+.+..-.|....... ....-.--+-+.|||..+.+++-++.+-+..|.+..+....
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~ 245 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPA 245 (292)
T ss_dssp EETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCS
T ss_pred EeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEe
Confidence 355666666655554332111 01111122445799988788999999999999998877654
No 47
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.51 E-value=72 Score=18.78 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=22.7
Q ss_pred ecCCCchhhhhHHHHHHHHhhcceEEEEecC
Q 037799 34 RLPGLAVHLYNRKILQKLGELVGIVIRIDPH 64 (131)
Q Consensus 34 ri~~lP~~~~~~~~~~~i~~~iG~~l~vD~~ 64 (131)
-|-|||.. .+++-++.+-+..|.+..+...
T Consensus 9 ~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~ 38 (98)
T 2cpf_A 9 FIKNLNFS-TTEETLKGVFSKVGAIKSCTIS 38 (98)
T ss_dssp EEESCCTT-CCHHHHHHHHHTTSCEEEEEEE
T ss_pred EEeCCCCC-CCHHHHHHHHHhcCCeEEEEEE
Confidence 35689987 6777788888999998766544
No 48
>1hp9_A Kappa-hefutoxin 1; scorpion toxin, gating modifier, voltage-gated potassium channel; NMR {Synthetic} SCOP: j.33.2.1
Probab=24.16 E-value=8.6 Score=18.33 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=12.2
Q ss_pred cc-cccccccCcCcCC
Q 037799 108 CF-TCGRYGHTFWTLD 122 (131)
Q Consensus 108 C~-~Cg~~GH~~~~C~ 122 (131)
|+ +|-+-||.+..|.
T Consensus 4 cyr~cw~~g~deetck 19 (26)
T 1hp9_A 4 CYRNCWREGNDEETCK 19 (26)
T ss_dssp TTTHHHHHHSCTTHHH
T ss_pred HHHHHHHccCcHHHHH
Confidence 44 6889999999886
No 49
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.68 E-value=73 Score=18.81 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=25.2
Q ss_pred cCCCchhhhhHHHHHHHHhhcceEEEEecCCC
Q 037799 35 LPGLAVHLYNRKILQKLGELVGIVIRIDPHTA 66 (131)
Q Consensus 35 i~~lP~~~~~~~~~~~i~~~iG~~l~vD~~t~ 66 (131)
|-|||.. .+++-++.+-+..|.+..++..+.
T Consensus 22 V~nlp~~-~t~~~l~~~F~~~G~v~~v~~~~~ 52 (97)
T 1why_A 22 VGGLGPN-TSLAALAREFDRFGSIRTIDHVKG 52 (97)
T ss_dssp EECCCSS-CCHHHHHHHHHTTSCEEEEEECSS
T ss_pred EeCCCCC-CCHHHHHHHHHhcCCeeEEEEeCC
Confidence 4689987 677778899999999999887653
No 50
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=23.53 E-value=68 Score=18.42 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=22.5
Q ss_pred ecCCCchhhhhHHHHHHHHhhcceEEEEec
Q 037799 34 RLPGLAVHLYNRKILQKLGELVGIVIRIDP 63 (131)
Q Consensus 34 ri~~lP~~~~~~~~~~~i~~~iG~~l~vD~ 63 (131)
-+-|||... +++-++.+-+..|.+..+..
T Consensus 15 ~V~nlp~~~-t~~~l~~~F~~~G~i~~v~i 43 (87)
T 3s7r_A 15 FVGGLSWDT-SKKDLKDYFTKFGEVVDCTI 43 (87)
T ss_dssp EEECCCTTC-CHHHHHHHHTTTSCEEEEEE
T ss_pred EEeCCCCCC-CHHHHHHHHHhCCCEEEEEE
Confidence 346899775 77778888899999877654
No 51
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=23.28 E-value=1.1e+02 Score=20.24 Aligned_cols=59 Identities=12% Similarity=0.005 Sum_probs=31.7
Q ss_pred eeCceEEEEeecCCCCCCccCcceeeeeeecCCCchhhhhHHHHHHHHhhcceEEEEecC
Q 037799 5 TLNNYLTVQPWTPSFDVNKTDMEQVNVWIRLPGLAVHLYNRKILQKLGELVGIVIRIDPH 64 (131)
Q Consensus 5 f~~~~l~l~~w~~~~~~~~~~~~~~~vWVri~~lP~~~~~~~~~~~i~~~iG~~l~vD~~ 64 (131)
+++..+.+....+........-..-.--|-+.|||.. .+++-++.+-+..|.+..+...
T Consensus 79 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~ 137 (196)
T 1l3k_A 79 VDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKED-TEEHHLRDYFEQYGKIEVIEIM 137 (196)
T ss_dssp ETTEECEEEECCC-----------CCSEEEEECCTTT-CCHHHHHHHHTTTSCEEEEEEE
T ss_pred ECCEEeeeecccCcccccccccCCCcceEEEeCCCCC-CCHHHHHHHHhcCCCeEEEEEe
Confidence 4566666665444322211111111123456799987 5777788888899998766543
No 52
>1jyo_A SICP; bacterial pathogenesis, infectious disease, virulence factor, type III secretion, chaperone, unfolded; 1.90A {Salmonella typhimurium} SCOP: d.198.1.1
Probab=23.27 E-value=27 Score=23.43 Aligned_cols=22 Identities=23% Similarity=0.610 Sum_probs=19.2
Q ss_pred hHHHHHHHHhhcceEEEEecCC
Q 037799 44 NRKILQKLGELVGIVIRIDPHT 65 (131)
Q Consensus 44 ~~~~~~~i~~~iG~~l~vD~~t 65 (131)
.+..+..+|.++|.|+..|++.
T Consensus 4 ~e~LL~~lg~~lg~pL~fDen~ 25 (130)
T 1jyo_A 4 HQDIIANIGEKLGLPLTFDDNN 25 (130)
T ss_dssp HHHHHHHHHHHHTSCCCCCTTS
T ss_pred HHHHHHHHHHHhCCCcccCCCC
Confidence 4678999999999999988875
No 53
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=23.08 E-value=23 Score=21.31 Aligned_cols=65 Identities=12% Similarity=0.018 Sum_probs=35.7
Q ss_pred eecCCCchhhhhHHHHHHHHhhcc-eEEEEe----cCCCcc---chh-----HHHHHHHHhhcCCCceEEEEEcCeEeEE
Q 037799 33 IRLPGLAVHLYNRKILQKLGELVG-IVIRID----PHTASS---ARG-----RFARIAVRLSLDKPLVSQFVLDGKVQKV 99 (131)
Q Consensus 33 Vri~~lP~~~~~~~~~~~i~~~iG-~~l~vD----~~t~~~---~~~-----~~~RV~V~id~~kpL~~~v~i~g~~~~v 99 (131)
|-|.|||.. .+++-++.+-+..| ++..+. ..|... +.- .-|.-.++ -+.....++|..+.|
T Consensus 4 i~v~nLp~~-~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~-----~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 4 VMLRMLPQA-ATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWME-----ANQHSLNILGQKVSM 77 (91)
T ss_dssp EEEETCCSS-CCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHH-----TTTTEEEETTEEEEE
T ss_pred EEEeCCCCC-CCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHH-----hcCCCeEECCEEEEE
Confidence 346799987 46666777777888 665543 332211 111 12222222 122356678888888
Q ss_pred EEcc
Q 037799 100 EYEG 103 (131)
Q Consensus 100 ~YE~ 103 (131)
+|-.
T Consensus 78 ~~a~ 81 (91)
T 2lxi_A 78 HYSD 81 (91)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 8754
No 54
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=23.07 E-value=87 Score=18.23 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=22.6
Q ss_pred ecCCCchhhhhHHHHHHHHhhcceEEEEecC
Q 037799 34 RLPGLAVHLYNRKILQKLGELVGIVIRIDPH 64 (131)
Q Consensus 34 ri~~lP~~~~~~~~~~~i~~~iG~~l~vD~~ 64 (131)
-|-|||.. .+++-++.+-+..|.+..+...
T Consensus 20 ~v~nlp~~-~~~~~l~~~F~~~G~i~~v~i~ 49 (95)
T 2ywk_A 20 FVGNLEAR-VREEILYELFLQAGPLTKVTIC 49 (95)
T ss_dssp EEECCCTT-CCHHHHHHHHGGGSCEEEEEEE
T ss_pred EEECCCCC-CCHHHHHHHHHhcCCEEEEEEE
Confidence 34699987 5667788888999998776543
No 55
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=22.93 E-value=25 Score=27.36 Aligned_cols=42 Identities=12% Similarity=0.235 Sum_probs=32.0
Q ss_pred EeecCCCCCCccCcc----e--eeeeeecCCCchhhhhHHHHHHHHhhc
Q 037799 13 QPWTPSFDVNKTDME----Q--VNVWIRLPGLAVHLYNRKILQKLGELV 55 (131)
Q Consensus 13 ~~w~~~~~~~~~~~~----~--~~vWVri~~lP~~~~~~~~~~~i~~~i 55 (131)
.+|.||+.|....-+ . .--|+--+|+|+ .-+.+++++||..+
T Consensus 155 ~~~~PD~Gp~~~~p~~Gat~vGAr~~liayNVnL-t~~~~~A~~IA~~v 202 (325)
T 1qd1_A 155 AEWAPDFGPSAFVPSWGATVAGARKFLLAFNINL-LSTREQAHRIALDL 202 (325)
T ss_dssp GGGCCSBSCCCCCTTTBCEEEEECSCCEEEEEEE-SSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcceEEEecCCceeeEeeec-cCcHHHHHHHHHHh
Confidence 469999998764211 1 235888999999 77889999999988
No 56
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.42 E-value=25 Score=19.49 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=9.9
Q ss_pred ccCccccccccc
Q 037799 102 EGLPVICFTCGR 113 (131)
Q Consensus 102 E~lp~~C~~Cg~ 113 (131)
+++..||..||.
T Consensus 16 ~~~~k~CP~CG~ 27 (50)
T 3j20_Y 16 IRKNKFCPRCGP 27 (50)
T ss_dssp ECSSEECSSSCS
T ss_pred EEecccCCCCCC
Confidence 467889999986
No 57
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=21.80 E-value=44 Score=19.17 Aligned_cols=30 Identities=7% Similarity=-0.064 Sum_probs=23.2
Q ss_pred cCCCchhhh-----hHHHHHHHHhhcceEEEEecC
Q 037799 35 LPGLAVHLY-----NRKILQKLGELVGIVIRIDPH 64 (131)
Q Consensus 35 i~~lP~~~~-----~~~~~~~i~~~iG~~l~vD~~ 64 (131)
+-|||...- +++-++.+-+..|.+..+...
T Consensus 6 V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~ 40 (81)
T 2krb_A 6 VDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP 40 (81)
T ss_dssp EESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec
Confidence 568887653 568889999999999887654
No 58
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.52 E-value=93 Score=17.65 Aligned_cols=30 Identities=17% Similarity=0.049 Sum_probs=23.5
Q ss_pred cCCCchhhhhHHHHHHHHhhcceEEEEecCC
Q 037799 35 LPGLAVHLYNRKILQKLGELVGIVIRIDPHT 65 (131)
Q Consensus 35 i~~lP~~~~~~~~~~~i~~~iG~~l~vD~~t 65 (131)
+-|||.. .+++-++.+-+..|.+..+....
T Consensus 17 V~~l~~~-~t~~~l~~~f~~~G~i~~~~~~~ 46 (85)
T 2ytc_A 17 VGGLGDT-ITETDLRNHFYQFGEIRTITVVQ 46 (85)
T ss_dssp EECCTTT-SCHHHHHHHHHTTSCEEEEEEEG
T ss_pred EcCCCCC-CCHHHHHHHHHhCCCEeEEEEEC
Confidence 4699987 67777888889999988877653
No 59
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=21.26 E-value=28 Score=14.69 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=5.8
Q ss_pred cccccccccc
Q 037799 105 PVICFTCGRY 114 (131)
Q Consensus 105 p~~C~~Cg~~ 114 (131)
|.-|..||+-
T Consensus 1 ~~~C~~C~k~ 10 (27)
T 1znf_A 1 XYKCGLCERS 10 (27)
T ss_dssp -CBCSSSCCB
T ss_pred CccCCCCCCc
Confidence 3457777754
No 60
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.14 E-value=87 Score=18.24 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=23.2
Q ss_pred ecCCCchhhhhHHHHHHHHhhcceEEEEecCC
Q 037799 34 RLPGLAVHLYNRKILQKLGELVGIVIRIDPHT 65 (131)
Q Consensus 34 ri~~lP~~~~~~~~~~~i~~~iG~~l~vD~~t 65 (131)
-|-|||.. .+++-++.+-+..|.+..+....
T Consensus 9 ~v~nlp~~-~t~~~l~~~f~~~G~v~~v~i~~ 39 (95)
T 2dnz_A 9 YVGSLHFN-ITEDMLRGIFEPFGKIDNIVLMK 39 (95)
T ss_dssp EEESCCTT-CCHHHHHHHHTTTSCEEEEEEEC
T ss_pred EEeCCCCC-CCHHHHHHHHHhcCCEeEEEEee
Confidence 35699987 56777888889999987766543
No 61
>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A
Probab=21.09 E-value=46 Score=27.67 Aligned_cols=44 Identities=9% Similarity=0.187 Sum_probs=33.2
Q ss_pred EeecCCCCCCccCcc----e--eeeeeecCCCchhhhhHHHHHHHHhhcce
Q 037799 13 QPWTPSFDVNKTDME----Q--VNVWIRLPGLAVHLYNRKILQKLGELVGI 57 (131)
Q Consensus 13 ~~w~~~~~~~~~~~~----~--~~vWVri~~lP~~~~~~~~~~~i~~~iG~ 57 (131)
.+|.||++|....-+ . .--|+--+|+|+ .-+.+++++||..|.+
T Consensus 156 ~~~~PD~Gp~~~~~~~G~t~vGAr~~liayNV~L-t~~~~~a~~IA~~vr~ 205 (541)
T 1tt9_A 156 AEWVPDFGPSSFVPSWGATVTGARKFLIAFNINL-LSTKEQAHRIALNLRE 205 (541)
T ss_pred CCCCCCCCCCCCCCCCceEEEecCcceeeeeeec-cccHHHHHHHHHHhhh
Confidence 679999998764211 1 235888999999 7888999999987743
No 62
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=20.89 E-value=71 Score=15.19 Aligned_cols=20 Identities=10% Similarity=0.355 Sum_probs=15.9
Q ss_pred CCchhhhhHHHHHHHHhhcc
Q 037799 37 GLAVHLYNRKILQKLGELVG 56 (131)
Q Consensus 37 ~lP~~~~~~~~~~~i~~~iG 56 (131)
++|.++|-..-++.||....
T Consensus 1 ~m~PE~~iAqELRRIGDeFN 20 (26)
T 2wh6_B 1 DMRPEIWIAQELRRIGDEFN 20 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHhHHHh
Confidence 46788888889999997653
No 63
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.46 E-value=27 Score=14.90 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=7.5
Q ss_pred ccccccccccc
Q 037799 105 PVICFTCGRYG 115 (131)
Q Consensus 105 p~~C~~Cg~~G 115 (131)
|.-|..||.-.
T Consensus 3 ~~~C~~C~k~f 13 (27)
T 2kvh_A 3 PFSCSLCPQRS 13 (27)
T ss_dssp CEECSSSSCEE
T ss_pred CccCCCcChhh
Confidence 55688888643
No 64
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.39 E-value=31 Score=14.93 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=6.8
Q ss_pred cccccccccc
Q 037799 105 PVICFTCGRY 114 (131)
Q Consensus 105 p~~C~~Cg~~ 114 (131)
|..|..||..
T Consensus 2 ~~~C~~C~k~ 11 (30)
T 1paa_A 2 AYACGLCNRA 11 (30)
T ss_dssp CSBCTTTCCB
T ss_pred CcCCcccCcc
Confidence 4568888764
No 65
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=20.32 E-value=53 Score=21.48 Aligned_cols=53 Identities=8% Similarity=-0.058 Sum_probs=34.0
Q ss_pred eeeCceEEEEeecCCCCCCccCcceeeeeeecCCCchhhhhHHHHHHHHhhcceEEEE
Q 037799 4 LTLNNYLTVQPWTPSFDVNKTDMEQVNVWIRLPGLAVHLYNRKILQKLGELVGIVIRI 61 (131)
Q Consensus 4 ~f~~~~l~l~~w~~~~~~~~~~~~~~~vWVri~~lP~~~~~~~~~~~i~~~iG~~l~v 61 (131)
.+.|..+.+..-.+..... .-.... +-+.|||.. .+++-++.+-+.+|++..+
T Consensus 77 ~~~g~~l~v~~~~~~~~~~--~~~~~~--l~v~nlp~~-~t~~~l~~~F~~~g~v~~~ 129 (175)
T 1fje_B 77 KVFGNEIKLEKPKGRDSKK--VRAART--LLAKNLSFN-ITEDELKEVFEDALEIRLV 129 (175)
T ss_dssp EETTEEEEEECCCCSSCST--TGGGGE--EEEESCCSS-CCHHHHHHHCTTCSEEEEE
T ss_pred EeCCeEEEEecCCCccccc--cccCCE--EEEeCCCCC-CCHHHHHHHHHhcCeEEEe
Confidence 3567777776555432221 112223 345799976 5777788888899999888
No 66
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.28 E-value=97 Score=17.92 Aligned_cols=30 Identities=23% Similarity=0.192 Sum_probs=24.0
Q ss_pred cCCCchhhhhHHHHHHHHhhcceEEEEecCC
Q 037799 35 LPGLAVHLYNRKILQKLGELVGIVIRIDPHT 65 (131)
Q Consensus 35 i~~lP~~~~~~~~~~~i~~~iG~~l~vD~~t 65 (131)
+-|||.. .+++-++.+-+..|.+..+....
T Consensus 14 V~nlp~~-~t~~~l~~~F~~~G~v~~~~~~~ 43 (90)
T 2dnp_A 14 VGNVSAA-CTSQELRSLFERRGRVIECDVVK 43 (90)
T ss_dssp EESCCTT-CCHHHHHHHHHHHSCEEEEEECS
T ss_pred EeCCCCC-CCHHHHHHHHHcCCCEEEEEEEC
Confidence 4699987 57777888889999998877653
No 67
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=20.27 E-value=93 Score=18.59 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=23.8
Q ss_pred cCCCchhhhhHHHHHHHHhhcceEEEEecC
Q 037799 35 LPGLAVHLYNRKILQKLGELVGIVIRIDPH 64 (131)
Q Consensus 35 i~~lP~~~~~~~~~~~i~~~iG~~l~vD~~ 64 (131)
|-|||.. .+++-++.+-+..|.+..+...
T Consensus 16 V~nl~~~-~t~~~l~~~F~~~G~i~~v~~~ 44 (103)
T 2dgu_A 16 VRNLANT-VTEEILEKAFSQFGKLERVKKL 44 (103)
T ss_dssp EECCCTT-CCHHHHHHHHHHHSCEEEEEEC
T ss_pred EeCCCCC-CCHHHHHHHHHhcCCEEEEEEE
Confidence 4699987 6778888899999999888765
Done!