BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037801
         (84 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
           GN=At1g04910 PE=1 SV=1
          Length = 519

 Score = 33.5 bits (75), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)

Query: 38  AALDYIVSVESDVFIPSYSG--NMARAVEGHLMLRFSGLSKTI 78
           +A+DY+V + SD+F+P+Y G  N A  + GH +  + G   TI
Sbjct: 377 SAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRL--YYGFRTTI 417


>sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter OS=Homo sapiens
           GN=SLC32A1 PE=1 SV=2
          Length = 525

 Score = 30.0 bits (66), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 43  IVSVESDVFIPSYSGNMARAVEGHLMLRFSGLSKTI 78
           + S  S +F+PS  GNM +  E H M+ ++ ++  +
Sbjct: 314 VFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACV 349


>sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transporter OS=Rattus norvegicus
           GN=Slc32a1 PE=1 SV=1
          Length = 525

 Score = 29.6 bits (65), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 43  IVSVESDVFIPSYSGNMARAVEGHLMLRFSGLSKTI 78
           + S  S +F+PS  GNM +  E H M+ ++ ++  +
Sbjct: 314 VFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACV 349


>sp|O35633|VIAAT_MOUSE Vesicular inhibitory amino acid transporter OS=Mus musculus
           GN=Slc32a1 PE=1 SV=3
          Length = 525

 Score = 29.6 bits (65), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 43  IVSVESDVFIPSYSGNMARAVEGHLMLRFSGLSKTI 78
           + S  S +F+PS  GNM +  E H M+ ++ ++  +
Sbjct: 314 VFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACV 349


>sp|Q95KE2|VIAAT_MACFA Vesicular inhibitory amino acid transporter OS=Macaca fascicularis
           GN=SLC32A1 PE=2 SV=1
          Length = 525

 Score = 29.6 bits (65), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 43  IVSVESDVFIPSYSGNMARAVEGHLMLRFSGLSKTI 78
           + S  S +F+PS  GNM +  E H M+ ++ ++  +
Sbjct: 314 VFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACV 349


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.131    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,199,859
Number of Sequences: 539616
Number of extensions: 721719
Number of successful extensions: 2081
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2076
Number of HSP's gapped (non-prelim): 7
length of query: 84
length of database: 191,569,459
effective HSP length: 55
effective length of query: 29
effective length of database: 161,890,579
effective search space: 4694826791
effective search space used: 4694826791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)