Query 037801
Match_columns 84
No_of_seqs 100 out of 263
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 99.4 1.7E-13 3.6E-18 102.4 1.9 67 5-75 279-345 (351)
2 PF15264 TSSC4: Tumour suppres 68.7 3.7 8E-05 28.3 1.8 33 13-47 61-93 (115)
3 PF02845 CUE: CUE domain; Int 49.9 11 0.00023 20.8 1.2 34 5-45 5-40 (42)
4 smart00546 CUE Domain that may 49.0 11 0.00023 20.7 1.2 35 5-44 6-40 (43)
5 COG4957 Predicted transcriptio 36.0 8.8 0.00019 27.8 -0.7 8 40-47 74-81 (148)
6 PF12038 DUF3524: Domain of un 29.2 1E+02 0.0022 22.6 3.9 72 1-75 67-145 (168)
7 PF14771 DUF4476: Domain of un 28.1 15 0.00033 23.2 -0.5 17 5-21 59-75 (95)
8 PF03474 DMA: DMRTA motif; In 26.1 51 0.0011 18.9 1.5 14 2-15 2-15 (39)
9 PF12434 Malate_DH: Malate deh 25.5 31 0.00067 18.6 0.5 12 31-42 13-24 (28)
10 PF11037 Musclin: Insulin-resi 21.4 51 0.0011 23.5 1.1 45 37-83 61-113 (132)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=99.37 E-value=1.7e-13 Score=102.41 Aligned_cols=67 Identities=24% Similarity=0.366 Sum_probs=47.6
Q ss_pred hhhHHHhcccceeccCCCCcccccccccchhhHhHhhhhhhcccceeeecCCCcHHHHHhhhchhhhcccc
Q 037801 5 VVFALRNYSSAAKQGKLASVEELEPFVNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHLMLRFSGLS 75 (84)
Q Consensus 5 ~~~L~~~FPn~~tKe~L~~~~EL~~f~~~~s~~aAlDy~V~~~SDvFv~t~~GNm~~~v~GhR~~~y~G~~ 75 (84)
|.+|++.||++++|+.+.+.+|++++.+ +++|+||++||++||+||.|...+|...|+++| .+.|+.
T Consensus 279 l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R--~~~g~~ 345 (351)
T PF10250_consen 279 LDPLKNMFPNVVTKDDLLSHEELEPLND--DQLAMVDQEICSRSDVFIGTCGSTFSSNIARER--HYRGKP 345 (351)
T ss_dssp ----HHHHHHHHGGGT--EE--S-------S--HHHHHHHHHHSSEEEE-TT-HHHHHHHHHH--HHSSSS
T ss_pred HHHHHHHhhhhEeccccCCHHHhhhccc--cchhHHHHHHHhcCCEEEecCcchhHHHhhccc--CcCCCC
Confidence 5899999999999999999999999966 999999999999999999999556999999999 888864
No 2
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=68.71 E-value=3.7 Score=28.32 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=26.2
Q ss_pred ccceeccCCCCcccccccccchhhHhHhhhhhhcc
Q 037801 13 SSAAKQGKLASVEELEPFVNHASQMAALDYIVSVE 47 (84)
Q Consensus 13 Pn~~tKe~L~~~~EL~~f~~~~s~~aAlDy~V~~~ 47 (84)
|.=+||.+|....| ....++|+.||++|+-.+.
T Consensus 61 P~KwTkYSL~dv~e--D~sd~sN~~aAl~FL~~l~ 93 (115)
T PF15264_consen 61 PEKWTKYSLDDVSE--DMSDQSNRAAALAFLRELR 93 (115)
T ss_pred cccceeeecCCCcc--ccccchhHHHHHHHHHHHH
Confidence 56689999987766 4568999999999996543
No 3
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=49.88 E-value=11 Score=20.79 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=22.3
Q ss_pred hhhHHHhcccceeccCCCCccccccc--ccchhhHhHhhhhhh
Q 037801 5 VVFALRNYSSAAKQGKLASVEELEPF--VNHASQMAALDYIVS 45 (84)
Q Consensus 5 ~~~L~~~FPn~~tKe~L~~~~EL~~f--~~~~s~~aAlDy~V~ 45 (84)
+.-|+++||++- .+.++.- .+.++..+|+|.+.+
T Consensus 5 v~~L~~mFP~~~-------~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 5 VQQLQEMFPDLD-------REVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHSSSS--------HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHCCCCC-------HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 467899999973 3333333 346678888887765
No 4
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=49.01 E-value=11 Score=20.75 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=19.1
Q ss_pred hhhHHHhcccceeccCCCCcccccccccchhhHhHhhhhh
Q 037801 5 VVFALRNYSSAAKQGKLASVEELEPFVNHASQMAALDYIV 44 (84)
Q Consensus 5 ~~~L~~~FPn~~tKe~L~~~~EL~~f~~~~s~~aAlDy~V 44 (84)
+.-|++|||++-.-. + ..-|+ .+.++..+|+|-+.
T Consensus 6 v~~L~~mFP~l~~~~-I--~~~L~--~~~g~ve~~i~~LL 40 (43)
T smart00546 6 LHDLKDMFPNLDEEV-I--KAVLE--ANNGNVEATINNLL 40 (43)
T ss_pred HHHHHHHCCCCCHHH-H--HHHHH--HcCCCHHHHHHHHH
Confidence 567999999974321 1 11111 13556667766543
No 5
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=35.95 E-value=8.8 Score=27.82 Aligned_cols=8 Identities=50% Similarity=0.949 Sum_probs=7.1
Q ss_pred hhhhhhcc
Q 037801 40 LDYIVSVE 47 (84)
Q Consensus 40 lDy~V~~~ 47 (84)
=|||||+|
T Consensus 74 pD~IicLE 81 (148)
T COG4957 74 PDYIICLE 81 (148)
T ss_pred CCeEEEec
Confidence 49999998
No 6
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=29.19 E-value=1e+02 Score=22.63 Aligned_cols=72 Identities=11% Similarity=-0.008 Sum_probs=48.8
Q ss_pred CCchhhhHHHhccccee-------ccCCCCcccccccccchhhHhHhhhhhhcccceeeecCCCcHHHHHhhhchhhhcc
Q 037801 1 SLCPVVFALRNYSSAAK-------QGKLASVEELEPFVNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHLMLRFSG 73 (84)
Q Consensus 1 ~~~~~~~L~~~FPn~~t-------Ke~L~~~~EL~~f~~~~s~~aAlDy~V~~~SDvFv~t~~GNm~~~v~GhR~~~y~G 73 (84)
|...|.-|+.+.|++.. ||.=.+-=. .+=+...-+-.-++++=|+.+|.-+-+..=||...+.|-| .|..
T Consensus 67 smldLa~l~gL~p~l~~~p~ilYFHENQl~YP~-~~~~~rd~~~~~~ni~saLaAD~v~FNS~~nr~sFL~~~~--~fL~ 143 (168)
T PF12038_consen 67 SMLDLATLRGLRPDLANVPKILYFHENQLAYPV-SPGQERDFQYGMNNIYSALAADRVVFNSAFNRDSFLDGIP--SFLK 143 (168)
T ss_pred ccccHHHHHhhccCCCCCCEEEEEecCcccCCC-CCCccccccHHHHHHHHHHhceeeeecchhhHHHHHHHHH--HHHH
Confidence 45677888888887533 333221110 0111223355778999999999999998899999999999 7765
Q ss_pred cc
Q 037801 74 LS 75 (84)
Q Consensus 74 ~~ 75 (84)
..
T Consensus 144 ~~ 145 (168)
T PF12038_consen 144 RM 145 (168)
T ss_pred HC
Confidence 43
No 7
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=28.15 E-value=15 Score=23.19 Aligned_cols=17 Identities=6% Similarity=-0.095 Sum_probs=12.5
Q ss_pred hhhHHHhcccceeccCC
Q 037801 5 VVFALRNYSSAAKQGKL 21 (84)
Q Consensus 5 ~~~L~~~FPn~~tKe~L 21 (84)
|.-|+-++|++++++.-
T Consensus 59 l~~lk~l~p~i~D~~n~ 75 (95)
T PF14771_consen 59 LKALKLLYPYIVDPQNY 75 (95)
T ss_pred HHHHHHHhhhccCHHHH
Confidence 56678888888888643
No 8
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=26.08 E-value=51 Score=18.91 Aligned_cols=14 Identities=14% Similarity=0.282 Sum_probs=11.9
Q ss_pred CchhhhHHHhcccc
Q 037801 2 LCPVVFALRNYSSA 15 (84)
Q Consensus 2 ~~~~~~L~~~FPn~ 15 (84)
-.|++-|..+||+-
T Consensus 2 r~pidiL~rvFP~~ 15 (39)
T PF03474_consen 2 RSPIDILTRVFPHQ 15 (39)
T ss_pred CCHHHHHHHHCCCC
Confidence 36899999999985
No 9
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=25.53 E-value=31 Score=18.63 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=8.8
Q ss_pred ccchhhHhHhhh
Q 037801 31 VNHASQMAALDY 42 (84)
Q Consensus 31 ~~~~s~~aAlDy 42 (84)
+.-..+.|||+|
T Consensus 13 ~r~~lR~AALeY 24 (28)
T PF12434_consen 13 KRAQLRQAALEY 24 (28)
T ss_pred HHHHHHHHHHHh
Confidence 344568899998
No 10
>PF11037 Musclin: Insulin-resistance promoting peptide in skeletal muscle; InterPro: IPR021088 Osteocrin, also known as Musclin, is a muscle derived secretory peptide which induces insulin resistance in vitro. It encodes a 130 amino acid sequence including a N-terminal 30 amino acid signal sequence. Musclin expression level is tightly regulated by nutritional changes [, ].
Probab=21.36 E-value=51 Score=23.51 Aligned_cols=45 Identities=31% Similarity=0.514 Sum_probs=29.5
Q ss_pred HhHhhhhhhcccceee-------ecCCCcHHHHHhhhchhhhccc-cceeecCCC
Q 037801 37 MAALDYIVSVESDVFI-------PSYSGNMARAVEGHLMLRFSGL-SKTIEINTR 83 (84)
Q Consensus 37 ~aAlDy~V~~~SDvFv-------~t~~GNm~~~v~GhR~~~y~G~-~kTI~Pdr~ 83 (84)
+--||=.|++|-||+= |.++--.+++-+|-= -..|+ ||.+..-||
T Consensus 61 LllLDeLVsLENDViETKkKRSFpGFgsPlDRlSags~--d~kgKqRk~v~~pkr 113 (132)
T PF11037_consen 61 LLLLDELVSLENDVIETKKKRSFPGFGSPLDRLSAGSV--DHKGKQRKVVEHPKR 113 (132)
T ss_pred HHHHHHHHHhhhhhhhhhccccCCCCCChhhhhccCCc--CccccccccccCchh
Confidence 3448999999999984 444435888888822 22276 666655544
Done!