Query 037801
Match_columns 84
No_of_seqs 100 out of 263
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 07:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 95.5 0.0099 3.4E-07 45.2 3.5 64 6-75 319-382 (408)
2 3zy2_A Putative GDP-fucose pro 89.1 0.31 1.1E-05 38.3 3.5 35 37-73 314-348 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 63.5 20 0.00069 28.7 6.6 32 36-67 386-417 (526)
4 1p3q_Q VPS9P, vacuolar protein 62.8 2.9 9.9E-05 24.6 1.2 35 5-44 16-50 (54)
5 1wgl_A TOLL-interacting protei 49.2 6.7 0.00023 23.0 1.2 43 5-54 13-57 (59)
6 2dhy_A CUE domain-containing p 47.8 7.1 0.00024 23.5 1.2 39 5-48 22-60 (67)
7 1otr_A Protein CUE2; protein-p 37.5 13 0.00046 21.1 1.2 37 5-48 8-46 (49)
8 3l9k_W Dynein intermediate cha 22.2 5.5 0.00019 21.9 -2.2 31 18-52 6-38 (38)
9 4dny_A Metalloprotease STCE; m 20.3 35 0.0012 23.0 1.0 47 13-61 20-66 (126)
10 2a1r_A Poly(A)-specific ribonu 17.2 34 0.0012 26.5 0.5 38 6-43 313-350 (430)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=95.49 E-value=0.0099 Score=45.22 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=49.8
Q ss_pred hhHHHhcccceeccCCCCcccccccccchhhHhHhhhhhhcccceeeecCCCcHHHHHhhhchhhhcccc
Q 037801 6 VFALRNYSSAAKQGKLASVEELEPFVNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHLMLRFSGLS 75 (84)
Q Consensus 6 ~~L~~~FPn~~tKe~L~~~~EL~~f~~~~s~~aAlDy~V~~~SDvFv~t~~GNm~~~v~GhR~~~y~G~~ 75 (84)
.-|++.+|.++.-.. ..+++..+ .....|.||-.||..||+||.|..=.|...|.=.| ...|+.
T Consensus 319 ~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR--~~~G~~ 382 (408)
T 4ap5_A 319 EELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEER--EILGLD 382 (408)
T ss_dssp HHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHH--HHHTBC
T ss_pred HHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHH--HhcCCC
Confidence 457778887664332 34444544 34567899999999999999999999999999999 999985
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=89.08 E-value=0.31 Score=38.35 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=32.4
Q ss_pred HhHhhhhhhcccceeeecCCCcHHHHHhhhchhhhcc
Q 037801 37 MAALDYIVSVESDVFIPSYSGNMARAVEGHLMLRFSG 73 (84)
Q Consensus 37 ~aAlDy~V~~~SDvFv~t~~GNm~~~v~GhR~~~y~G 73 (84)
.|+||-+||.+||+||.|..-.|...|.=.| --.|
T Consensus 314 ~a~ID~~I~~~A~~FIGN~~SSFSa~I~rER--di~G 348 (362)
T 3zy2_A 314 DMYTSLAIMGRADLFVGNCVSTFSHIVKRER--DHAG 348 (362)
T ss_dssp CHHHHHHHHHHSSEEEECTTCHHHHHHHHHH--HHSS
T ss_pred hhHHHHHHHHhCCEeecCccccccHHHHHHH--HhcC
Confidence 7999999999999999999889999999888 7777
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=63.54 E-value=20 Score=28.69 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=27.8
Q ss_pred hHhHhhhhhhcccceeeecCCCcHHHHHhhhc
Q 037801 36 QMAALDYIVSVESDVFIPSYSGNMARAVEGHL 67 (84)
Q Consensus 36 ~~aAlDy~V~~~SDvFv~t~~GNm~~~v~GhR 67 (84)
..+-+|.++.+++|+||.|.+-|+.+++...+
T Consensus 386 ~~~l~DL~lLs~cd~~Vgt~sS~~srla~~l~ 417 (526)
T 2de0_X 386 RGVILDIHFLSQADFLVCTFSSQVCRVAYEIM 417 (526)
T ss_dssp HHHHHHHHHHHHSSEEEECTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeeecCCCCHHHHHHHHHh
Confidence 56889999999999999999988888776665
No 4
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=62.79 E-value=2.9 Score=24.62 Aligned_cols=35 Identities=3% Similarity=0.010 Sum_probs=16.9
Q ss_pred hhhHHHhcccceeccCCCCcccccccccchhhHhHhhhhh
Q 037801 5 VVFALRNYSSAAKQGKLASVEELEPFVNHASQMAALDYIV 44 (84)
Q Consensus 5 ~~~L~~~FPn~~tKe~L~~~~EL~~f~~~~s~~aAlDy~V 44 (84)
+.-|++|||++-. |.+ .+=+ ..+.++..+|||-..
T Consensus 16 ~~~L~~MFP~lD~-evI--~~Vl--~a~~G~~~~~IdaLL 50 (54)
T 1p3q_Q 16 LNTLQNMFPDMDP-SLI--EDVC--IAAASRIGPCVDALL 50 (54)
T ss_dssp HHHHHHHSTTSCH-HHH--HHHH--HHSCC--CGGGC---
T ss_pred HHHHHHHcccCCH-HHH--HHHH--HHcCCCHHHHHHHHH
Confidence 5679999999842 222 0001 134556666666543
No 5
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=49.19 E-value=6.7 Score=22.97 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=29.5
Q ss_pred hhhHHHhcccceeccCCCCccccccc--ccchhhHhHhhhhhhcccceeeec
Q 037801 5 VVFALRNYSSAAKQGKLASVEELEPF--VNHASQMAALDYIVSVESDVFIPS 54 (84)
Q Consensus 5 ~~~L~~~FPn~~tKe~L~~~~EL~~f--~~~~s~~aAlDy~V~~~SDvFv~t 54 (84)
+.-|++|||++-. +-++.. .+.++..+|||-...+..+-|=|+
T Consensus 13 l~~L~emFP~ld~-------~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 13 LKAIQDMFPNMDQ-------EVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHCSSSCH-------HHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHCCCCCH-------HHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 6789999999742 333332 346668899998888877765543
No 6
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.76 E-value=7.1 Score=23.55 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=23.2
Q ss_pred hhhHHHhcccceeccCCCCcccccccccchhhHhHhhhhhhccc
Q 037801 5 VVFALRNYSSAAKQGKLASVEELEPFVNHASQMAALDYIVSVES 48 (84)
Q Consensus 5 ~~~L~~~FPn~~tKe~L~~~~EL~~f~~~~s~~aAlDy~V~~~S 48 (84)
+.-|++|||++-.. .+ ..-|. .+.++..+|||-+..+..
T Consensus 22 v~~L~~MFP~lD~~-vI--~~vL~--a~~G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 22 MDDFKTMFPNMDYD-II--ECVLR--ANSGAVDATIDQLLQMNL 60 (67)
T ss_dssp HHHHHHHCSSSCHH-HH--HHHHH--HHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHH-HH--HHHHH--HcCCCHHHHHHHHHhcCC
Confidence 56799999997432 22 11111 245667788887665543
No 7
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=37.46 E-value=13 Score=21.09 Aligned_cols=37 Identities=5% Similarity=0.151 Sum_probs=22.5
Q ss_pred hhhHHHhcccceeccCCCCccccccc--ccchhhHhHhhhhhhccc
Q 037801 5 VVFALRNYSSAAKQGKLASVEELEPF--VNHASQMAALDYIVSVES 48 (84)
Q Consensus 5 ~~~L~~~FPn~~tKe~L~~~~EL~~f--~~~~s~~aAlDy~V~~~S 48 (84)
+.-|.+|||++- .++.+.- ...+...+|+|-++...+
T Consensus 8 v~~L~EMFP~~~-------~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 8 LSILMDMFPAIS-------KSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHCSSSC-------HHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCC-------HHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 456899999862 3333332 245667777777665543
No 8
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=22.22 E-value=5.5 Score=21.92 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=21.2
Q ss_pred ccCCCCcccccccccchhh--HhHhhhhhhcccceee
Q 037801 18 QGKLASVEELEPFVNHASQ--MAALDYIVSVESDVFI 52 (84)
Q Consensus 18 Ke~L~~~~EL~~f~~~~s~--~aAlDy~V~~~SDvFv 52 (84)
|..+++++|...|..++++ ..||| -+-|+|+
T Consensus 6 k~~I~~S~~F~~F~~rsskviERAL~----e~yDi~~ 38 (38)
T 3l9k_W 6 KQMIILSENFQRFVVRAGRVIERALS----ENVDIYT 38 (38)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHHHH----HSSCTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHc----ccccccC
Confidence 5566778888888888884 46764 4556553
No 9
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=20.31 E-value=35 Score=23.05 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=33.7
Q ss_pred ccceeccCCCCcccccccccchhhHhHhhhhhhcccceeeecCCCcHHH
Q 037801 13 SSAAKQGKLASVEELEPFVNHASQMAALDYIVSVESDVFIPSYSGNMAR 61 (84)
Q Consensus 13 Pn~~tKe~L~~~~EL~~f~~~~s~~aAlDy~V~~~SDvFv~t~~GNm~~ 61 (84)
|.=-|+..+.+..||..+..-+ -++|==++.-+.+|+|-+.||+-.+
T Consensus 20 ~~~~~~~~i~s~a~l~~~sd~s--g~~l~~~L~~~d~V~v~t~DG~W~r 66 (126)
T 4dny_A 20 PHNGTKKIINTVAEVNKLSDAS--GSSIHSHLTNNALVEIHTANGRWVR 66 (126)
T ss_dssp CSSSCEEEECSHHHHHGGGCTT--CHHHHHHHTSCSEEEEEEETTBCCS
T ss_pred cCCCceeeEechhhhhhccCCc--hHHHHHHhccCCEEEEEecCCceEc
Confidence 5566788888999999985222 2233333899999999999996544
No 10
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=17.21 E-value=34 Score=26.47 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=28.6
Q ss_pred hhHHHhcccceeccCCCCcccccccccchhhHhHhhhh
Q 037801 6 VFALRNYSSAAKQGKLASVEELEPFVNHASQMAALDYI 43 (84)
Q Consensus 6 ~~L~~~FPn~~tKe~L~~~~EL~~f~~~~s~~aAlDy~ 43 (84)
.-++++||.+++=..+++...+..+...+++..+.++.
T Consensus 313 ~~i~~lFP~i~DTK~la~~~~~~~~~~~~sL~~l~~~l 350 (430)
T 2a1r_A 313 EMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRL 350 (430)
T ss_dssp HHHHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHHHHHT
T ss_pred HHHHHHCCceeehHHhhhccchhhccCCCCHHHHHHHH
Confidence 35789999999998888887766665556666666664
Done!