Query 037802
Match_columns 312
No_of_seqs 238 out of 1740
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 04:32:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02164 sulfotransferase 100.0 2.5E-77 5.3E-82 548.0 28.3 306 4-312 31-343 (346)
2 KOG1584 Sulfotransferase [Gene 100.0 1.1E-76 2.4E-81 521.4 22.1 287 14-312 1-294 (297)
3 PF00685 Sulfotransfer_1: Sulf 100.0 1.2E-39 2.5E-44 291.0 12.5 248 51-309 1-267 (267)
4 PF13469 Sulfotransfer_3: Sulf 99.0 1.4E-10 3E-15 98.7 2.4 23 212-236 191-213 (215)
5 KOG3988 Protein-tyrosine sulfo 98.7 5.3E-09 1.2E-13 91.4 2.2 146 137-310 175-327 (378)
6 PF09037 Sulphotransf: Stf0 su 98.2 1.2E-06 2.5E-11 77.7 4.4 92 138-237 112-219 (245)
7 KOG3704 Heparan sulfate D-gluc 98.1 2.4E-05 5.1E-10 68.5 9.7 153 131-303 180-344 (360)
8 KOG3703 Heparan sulfate N-deac 97.1 0.0065 1.4E-07 58.5 12.0 96 137-234 685-790 (873)
9 KOG3922 Sulfotransferases [Pos 96.0 0.0084 1.8E-07 53.6 4.3 104 51-162 78-183 (361)
10 PF06990 Gal-3-0_sulfotr: Gala 95.2 0.035 7.7E-07 52.8 5.7 110 46-163 62-172 (402)
11 PF03567 Sulfotransfer_2: Sulf 94.4 0.045 9.9E-07 47.7 3.9 26 51-76 8-33 (253)
12 COG4424 Uncharacterized protei 83.9 1 2.2E-05 38.4 2.8 51 207-257 188-238 (250)
13 COG4424 Uncharacterized protei 75.4 3.6 7.7E-05 35.2 3.5 28 52-79 6-33 (250)
14 KOG4651 Chondroitin 6-sulfotra 67.6 2 4.2E-05 39.8 0.3 32 49-80 79-110 (324)
15 KOG4157 beta-1,6-N-acetylgluco 38.7 35 0.00075 32.7 3.5 171 44-238 197-368 (418)
16 PF01498 HTH_Tnp_Tc3_2: Transp 38.3 40 0.00086 23.2 3.0 62 215-305 7-71 (72)
17 cd00808 GluRS_core catalytic c 36.5 56 0.0012 28.8 4.3 53 183-237 12-69 (239)
18 COG1158 Rho Transcription term 33.5 42 0.0009 31.3 3.0 28 50-77 172-200 (422)
19 PF04036 DUF372: Domain of unk 31.2 31 0.00066 21.0 1.2 21 229-249 17-37 (38)
20 PF03205 MobB: Molybdopterin g 29.9 61 0.0013 25.8 3.2 25 54-78 3-28 (140)
21 TIGR03715 KxYKxGKxW KxYKxGKxW 29.8 44 0.00095 18.9 1.7 15 60-74 7-21 (29)
22 PF07498 Rho_N: Rho terminatio 28.9 85 0.0018 19.5 3.1 34 215-248 1-36 (43)
23 PF13671 AAA_33: AAA domain; P 28.9 55 0.0012 25.4 2.8 20 54-73 2-22 (143)
24 PF07582 AP_endonuc_2_N: AP en 24.9 1.8E+02 0.004 19.3 4.2 28 206-233 15-42 (55)
25 cd01038 Endonuclease_DUF559 Do 23.1 78 0.0017 23.9 2.5 26 206-231 82-107 (108)
26 PRK09767 hypothetical protein; 21.9 94 0.002 24.1 2.8 29 206-234 85-113 (117)
27 cd00418 GlxRS_core catalytic c 21.2 2.2E+02 0.0049 24.9 5.3 53 183-237 12-69 (230)
No 1
>PLN02164 sulfotransferase
Probab=100.00 E-value=2.5e-77 Score=548.05 Aligned_cols=306 Identities=40% Similarity=0.717 Sum_probs=263.8
Q ss_pred hhhhHHHhcCCCCCCCCccc-ceeeccEeccCCchhhHHHhhhcCccCCCCeEEEcCCCccchHHHHHHHHHHcCCCCCC
Q 037802 4 QEEGLLLDEYPKEKFWEILD-LYQLDGYWYSGDVIPGMLAFKSEFEALSDDVILASSMKTGTTWLKALCICIMGNQRKND 82 (312)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~r~~Dv~i~syPKSGtTWl~~il~~i~~~~~~~~ 82 (312)
.+|+++|+|||++++|.... ++.|+|+|+|..+.++++.++++|++|++|||||||||||||||++|+++|+++++++.
T Consensus 31 ~~~~~~~~~lp~~~~~~~~~~~~~y~G~w~~~~~~~~~~~~~~~f~~r~~DV~laSyPKsGTTWlq~iv~~i~~~~~~~~ 110 (346)
T PLN02164 31 KRYQDLIATLPHKKGWRPKEPLIEYGGHWWLQPLLEGLLHAQEFFQARPNDFLVCSYPKTGTTWLKALTFAIANRSRFDD 110 (346)
T ss_pred HHHHHHHhhCCCCcCCCCCCCeEEECCEEechhhhHHHHHHHHcCCCCCCCEEEEcCCCchhHHHHHHHHHHHcCCCccc
Confidence 38999999999999998665 88899999999878999999999999999999999999999999999999998876543
Q ss_pred CCccccccccCCCcccceeeeecccc-chHhhhhCCCCeeEeeccCCCCCCCcccCCCceEEEEeeCccceeehhhhhhh
Q 037802 83 GDEVDQLEVKNPHDHIKCLEYFYYFN-LLSKLKDMQSPRVFNTHLPYSALPESIKNSECKIVYIARNPKDTFVSLWHFFN 161 (312)
Q Consensus 83 ~~~~~~l~~~~~~~~~p~le~~~~~~-~~~~~~~~~~pr~iktH~~~~~lp~~~~~~~~k~I~ivRdPrDv~vS~~~~~~ 161 (312)
. .+++....||..+||||...... ..+.+.. ++||++|||+|++++|.++..+++|+|||+|||+|++||+|||..
T Consensus 111 ~--~~pl~~~~p~~~vP~lE~~~~~~~~~~~l~~-~~PRlikTHlp~~~lP~~i~~~~~KiIyv~RnPkDv~VS~yhf~~ 187 (346)
T PLN02164 111 S--SNPLLKRNPHEFVPYIEIDFPFFPSVDVLKD-KGNTLFSTHIPYGLLPDSVVKSGCKMVYIWRDPKDTFISMWTFLH 187 (346)
T ss_pred c--cCcccccCccccCCceecccCCCCchhhhcc-CCCCeeEecCChhhCccccccCCceEEEEecCchhheeeHHHHHh
Confidence 2 45676678899999999764321 2334443 689999999999999999999999999999999999999999987
Q ss_pred ccCCCCCCCCCHHHHHHHhhcCccccCChHHHHHHHHHHHhcCCCcEEEEechhhcCCcHHHHHHHHhHcCCCCCCcch-
Q 037802 162 QILPPNTEPYRLEKAYDSFIKGIHLFGPFHDHVLEYWQESLKNPNKLLFLKYEDLKRDPKGEVRKLASFLCRPFGDEDN- 240 (312)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~f~~g~~~~g~~~~~~~~~w~~~~~~~~~vl~v~YEDL~~d~~~~v~~I~~FLg~~~~~~~~- 240 (312)
.........++|+++++.|+.|...+|+||+|+++||+...+.+++||+|+||||++||.++|++||+|||++++++++
T Consensus 188 ~~~~~~~~~~s~ee~~e~f~~g~~~~G~y~dHv~~yw~~~~~~p~~VLfl~YEDmk~D~~~~v~ria~FLG~~~s~ee~~ 267 (346)
T PLN02164 188 KERSQQGPLNSLEESFDMFCRGLSVYGPYLDHVLGYWKAYQENPDRILFLKYETMRADPLPYVKRLAEFMGYGFTAEEEE 267 (346)
T ss_pred hccccCCCCCCHHHHHHHHHcCCCCCCcHHHHHHHHHHHhhcCCccEEEEEHHHHHHhHHHHHHHHHHHhCCCCchhhcc
Confidence 6543323346899999999999999999999999999985445679999999999999999999999999999997632
Q ss_pred -HHHHHHHHhCChhHHhhhhhhcCCCCCCC---CCCCcceeeccccCCCcccCcHHHHHHHHHHHHhhcCCCCCCC
Q 037802 241 -DEVDKVLWRSSFERLKNLEVNKNGKLSDS---GVPNSSFFRLGNVGDWQNCFTDEMKQGLDEITCKKFEGSGLDL 312 (312)
Q Consensus 241 -~~l~~iv~~~sf~~mk~~~~~~~~~~~~~---~~~~~~f~RkG~vG~Wk~~fs~eq~~~~~~~~~e~l~~~g~~f 312 (312)
+.+++|+++|||++||++++|..+..... ....+.|||||++|||||+||+||.++|+++++++|+|+||.|
T Consensus 268 ~~~v~~ive~~SFe~Mk~~e~n~~~~~~~~~~~~~~~~~FfRKG~vGdWkn~lt~e~~~r~d~~~~ekl~gsgl~~ 343 (346)
T PLN02164 268 KGVVEKVVKLCSFETLKNLEANKGEKDREDRPAVYANSAYFRKGKVGDWQNYLTPEMAARIDGLMEEKFKGTGLLE 343 (346)
T ss_pred hHHHHHHHHHCCHHHHhhhHhhccccccccccccccCcceeeccCCCCCcccCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 56999999999999999887765432100 1245679999999999999999999999999999999999987
No 2
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=100.00 E-value=1.1e-76 Score=521.43 Aligned_cols=287 Identities=43% Similarity=0.739 Sum_probs=249.0
Q ss_pred CCCCCCCc-ccceeeccEeccCCchhhHHHhhhcCccCCCCeEEEcCCCccchHHHHHHHHHHcCCCCCCCCcccccccc
Q 037802 14 PKEKFWEI-LDLYQLDGYWYSGDVIPGMLAFKSEFEALSDDVILASSMKTGTTWLKALCICIMGNQRKNDGDEVDQLEVK 92 (312)
Q Consensus 14 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~Dv~i~syPKSGtTWl~~il~~i~~~~~~~~~~~~~~l~~~ 92 (312)
|+.+.+.. ..++.|+|+|++..+.+.+.+++++|++|++||+||||||||||||++|+.+|+++++.+..+ .+++...
T Consensus 1 p~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~Fq~r~dDiiiaTyPKsGTTWlkel~~~i~~~~d~~~~~-~~pL~~~ 79 (297)
T KOG1584|consen 1 PSEKGSRGRFKLVEYQGCWYPPKFLQALLRVQKHFQARPDDVIIATYPKSGTTWLQELTFLILNRGDFEKAK-RHPLLER 79 (297)
T ss_pred CCccCcCCCcCeEEECCEEecHHHHHHHHHHHhcCCCCCCCEEEEecCCCchHHHHHHHHHHHcCCCccccc-CCchhhc
Confidence 55666665 778889999999999999999999999999999999999999999999999999999776432 3777777
Q ss_pred CCCcccceeeeeccccchHhhhhCCCCeeEeeccCCCCCCCcccCCCceEEEEeeCccceeehhhhhhhccCCCCCCCCC
Q 037802 93 NPHDHIKCLEYFYYFNLLSKLKDMQSPRVFNTHLPYSALPESIKNSECKIVYIARNPKDTFVSLWHFFNQILPPNTEPYR 172 (312)
Q Consensus 93 ~~~~~~p~le~~~~~~~~~~~~~~~~pr~iktH~~~~~lp~~~~~~~~k~I~ivRdPrDv~vS~~~~~~~~~~~~~~~~~ 172 (312)
+||..+|++|.... +...+..+++||+++||+|+.+||+++++.++|+||++|||+|++||+|||.+.... .+.+++
T Consensus 80 ~P~~e~p~~e~~~~--~~~~~~~l~SPRl~kTHlP~~lLp~s~~~~~cKvVYv~RNpKD~~VSy~hf~~~~~~-~~~~~~ 156 (297)
T KOG1584|consen 80 NPHLEVPFLELQLY--GNDSAPDLPSPRLFKTHLPFQLLPESLKESKCKVVYVCRNPKDVLVSYYHFNRMLKT-QPGPGT 156 (297)
T ss_pred CCceeecccccccc--cccccccCCCCcceeccCChhhcchhhhcCCCcEEEEecCccceeeeHHHHHhhhcc-CCCCCc
Confidence 77777777665443 345566778999999999999999999999999999999999999999999998753 445667
Q ss_pred HHHHHHHhhcCccccCChHHHHHHHHHHHhcCCCcEEEEechhhcCCcHHHHHHHHhHcCCCCCCcchHHHHHHHHhCCh
Q 037802 173 LEKAYDSFIKGIHLFGPFHDHVLEYWQESLKNPNKLLFLKYEDLKRDPKGEVRKLASFLCRPFGDEDNDEVDKVLWRSSF 252 (312)
Q Consensus 173 ~~~~~~~f~~g~~~~g~~~~~~~~~w~~~~~~~~~vl~v~YEDL~~d~~~~v~~I~~FLg~~~~~~~~~~l~~iv~~~sf 252 (312)
|++|++.||+|.+.||+||+||++||.. ++++|||+++||||++||..+|++||+|||.++++++ +++++.+.+|
T Consensus 157 ~e~~fe~F~~G~~~~Gp~~dHVl~~W~~--~~~~~VLFl~YEdmk~dp~~~ikrlaeFLg~~~~~Ee---~~~~~~~~~~ 231 (297)
T KOG1584|consen 157 FEEFFESFCNGVVPYGPWWDHVLGYWEL--EDPKNVLFLKYEDMKADPKGEIKKLAEFLGCPFTKEE---EDKGVVHLSF 231 (297)
T ss_pred HHHHHHHHhCCcCCcCChHHHHHHHHHh--cCCCceEEEEHHHhhhCHHHHHHHHHHHhCCCCCHHH---HhhhhHHHHH
Confidence 9999999999999999999999999995 5778999999999999999999999999999999998 8888888888
Q ss_pred hHHhhh-----hhhcCCCCCCCCCCCcceeeccccCCCcccCcHHHHHHHHHHHHhhcCC-CCCCC
Q 037802 253 ERLKNL-----EVNKNGKLSDSGVPNSSFFRLGNVGDWQNCFTDEMKQGLDEITCKKFEG-SGLDL 312 (312)
Q Consensus 253 ~~mk~~-----~~~~~~~~~~~~~~~~~f~RkG~vG~Wk~~fs~eq~~~~~~~~~e~l~~-~g~~f 312 (312)
+.|+.+ +.+..+. .....+.|+|||.+||||||||++|+++||.+++++|+| +||.|
T Consensus 232 ~~~~~n~l~nle~n~~~~---~~~~~~~F~RKG~vGDWKn~~T~~~~ekfD~~~eekm~g~sgL~F 294 (297)
T KOG1584|consen 232 ELCSLNPLSNLEVNKTEK---LLHKISPFFRKGEVGDWKNYLTPEMNEKFDKIYEEKMEGCSGLKF 294 (297)
T ss_pred HHHhhccccCceeccccc---ccccchhhhcCCCcccccccCCHHHHHHHHHHHHHHhcCCCCccc
Confidence 888753 2333222 123337899999999999999999999999999999999 88987
No 3
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=100.00 E-value=1.2e-39 Score=290.97 Aligned_cols=248 Identities=30% Similarity=0.536 Sum_probs=180.8
Q ss_pred CCCeEEEcCCCccchHHHHHHHHHHcCCCCCCCCccccccccCCCcccceeeee------------------ccccchHh
Q 037802 51 SDDVILASSMKTGTTWLKALCICIMGNQRKNDGDEVDQLEVKNPHDHIKCLEYF------------------YYFNLLSK 112 (312)
Q Consensus 51 ~~Dv~i~syPKSGtTWl~~il~~i~~~~~~~~~~~~~~l~~~~~~~~~p~le~~------------------~~~~~~~~ 112 (312)
+.+|||+|+||||||||++||............ ........ ....|+++.. ........
T Consensus 1 ~~~i~I~g~prSGTt~l~~lL~~h~~~~~~~~~--~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (267)
T PF00685_consen 1 PPPIFIVGAPRSGTTWLRELLNSHPDIFSFSPF--KEPHFFNN-RDYSPFLEWYRDFFPFRIKPQEHIPSFSHVESKIVR 77 (267)
T ss_dssp TTSEEEEESTTSSHHHHHHHHHHHHTTTETHHH--TSSHHTTT-HHHSTBTTHHHHTSHEEGTTTEEEGGCTTTETHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHhCccccccccc--ccccccch-hhhhhhhhhhhcccccccccccccccccccchhHHH
Confidence 579999999999999999999996543322000 00000001 2233433321 00002234
Q ss_pred hhhCCCCeeEeeccCCCCCCCcccCCCceEEEEeeCccceeehhhhhhhccCCCCCCCC-CHHHHHHHhhcCccccCChH
Q 037802 113 LKDMQSPRVFNTHLPYSALPESIKNSECKIVYIARNPKDTFVSLWHFFNQILPPNTEPY-RLEKAYDSFIKGIHLFGPFH 191 (312)
Q Consensus 113 ~~~~~~pr~iktH~~~~~lp~~~~~~~~k~I~ivRdPrDv~vS~~~~~~~~~~~~~~~~-~~~~~~~~f~~g~~~~g~~~ 191 (312)
+...+.+++++||+++..++..+..+++|+|+|+|||+|+++|.+++...... ....+ .++++++.++.....++.|+
T Consensus 78 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~KiI~ivRdP~d~~~S~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (267)
T PF00685_consen 78 LRDLPSPRFIKTHLPLDLLPKKLLFPNAKIIYIVRDPRDVIVSRYKHSWRSNP-FSDPGQRFEEFVDWFLQPRLLYGSWA 156 (267)
T ss_dssp HHCSCSSEEEEE-S-GGGSHHHHHHTTEEEEEEE--HHHHHHHHHHHHHHBTT-STTHHSHHHHHHHHHHTTHSTTSCHH
T ss_pred HhhccCchhhhhccccccccccccccccccceecccccchhHHHHHHHHhccc-ccccchhhhhhhhhhhcccccccccc
Confidence 55667899999999988776555568999999999999999999999876642 11222 37888888887777889999
Q ss_pred HHHHHHHHHHhcCCCcEEEEechhhcCCcHHHHHHHHhHcCCCCCCcchHHHHHHHHhCChhHHhhhhhhcCCCCCCCCC
Q 037802 192 DHVLEYWQESLKNPNKLLFLKYEDLKRDPKGEVRKLASFLCRPFGDEDNDEVDKVLWRSSFERLKNLEVNKNGKLSDSGV 271 (312)
Q Consensus 192 ~~~~~~w~~~~~~~~~vl~v~YEDL~~d~~~~v~~I~~FLg~~~~~~~~~~l~~iv~~~sf~~mk~~~~~~~~~~~~~~~ 271 (312)
+++..||.. ..++++++|+||||+.||.+++++|++|||++++++. ++.+++.++++.|+.......... ...
T Consensus 157 ~~~~~~~~~--~~~~~~~~i~YEdl~~dp~~~l~~I~~FLgl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 229 (267)
T PF00685_consen 157 DHLKSWLSS--FDRDNVLIIRYEDLVADPEKELKRICDFLGLPFSDEP---LDKIVEKSSFDNMRSKEARNKSKL--SDG 229 (267)
T ss_dssp HHHHHHHHH--TTTSTEEEEEHHHHHHSHHHHHHHHHHHTTSS--HHH---HHHHHHHTSHHHHHHETTTSSTTS--CTT
T ss_pred ccccchhhh--hccchhhhhcchhhhhhhhHHHHHHHHHHhhccchhh---hHHHHHhhhhhhhccccccccccc--ccC
Confidence 999999985 3557999999999999999999999999999999888 999999999999997543322110 011
Q ss_pred CCcceeeccccCCCcccCcHHHHHHHHHHHHhhcCCCC
Q 037802 272 PNSSFFRLGNVGDWQNCFTDEMKQGLDEITCKKFEGSG 309 (312)
Q Consensus 272 ~~~~f~RkG~vG~Wk~~fs~eq~~~~~~~~~e~l~~~g 309 (312)
....++|+|.+|+||++||+++++.|+++|++.|+.+|
T Consensus 230 ~~~~~~~~~~~~~W~~~l~~e~~~~i~~~~~~~m~~~~ 267 (267)
T PF00685_consen 230 SSSRFFRKGKSGRWKNELSPEQIDRIERICGDAMRELG 267 (267)
T ss_dssp TTSTSSEET-STGGGGTSBHHHHHHHHHHHHHHHTTSS
T ss_pred CcceeeeecccCcccccCCHHHHHHHHHHHHHHHccCC
Confidence 34678999999999999999999999999999999987
No 4
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=99.00 E-value=1.4e-10 Score=98.69 Aligned_cols=23 Identities=35% Similarity=0.728 Sum_probs=18.0
Q ss_pred echhhcCCcHHHHHHHHhHcCCCCC
Q 037802 212 KYEDLKRDPKGEVRKLASFLCRPFG 236 (312)
Q Consensus 212 ~YEDL~~d~~~~v~~I~~FLg~~~~ 236 (312)
+||||++||.+++++|++ + ++++
T Consensus 191 ~yedl~~~p~~~l~~i~~-~-~~l~ 213 (215)
T PF13469_consen 191 RYEDLVADPEATLRRICA-L-LELT 213 (215)
T ss_dssp EHHHHHHSHHHHHHHHHH-C-----
T ss_pred CHHHHHHCHHHHHHHHHH-h-hCCc
Confidence 679999999999999999 6 7664
No 5
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=5.3e-09 Score=91.36 Aligned_cols=146 Identities=17% Similarity=0.279 Sum_probs=82.4
Q ss_pred CCCceEEEEeeCccceeehhhhhhhccCCCCCCCCCHHHHHHHhhcCccccCChHHHHHHH-HH-HHhcCCCcEEEEech
Q 037802 137 NSECKIVYIARNPKDTFVSLWHFFNQILPPNTEPYRLEKAYDSFIKGIHLFGPFHDHVLEY-WQ-ESLKNPNKLLFLKYE 214 (312)
Q Consensus 137 ~~~~k~I~ivRdPrDv~vS~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~g~~~~~~~~~-w~-~~~~~~~~vl~v~YE 214 (312)
.|++|+++++||.|.++-|.--.--...+ -+..++.+-+. . |.+..+- .. -..-..++.+.|.||
T Consensus 175 fPNAKfllMvRDgRAtVhSmIsRKVtIaG-----fdlssyr~c~t-------k-WN~aie~M~~QC~~vg~~~Cl~VyYE 241 (378)
T KOG3988|consen 175 FPNAKFLLMVRDGRATVHSMISRKVTIAG-----FDLSSYRQCMT-------K-WNQAIEVMYFQCMEVGKKKCLKVYYE 241 (378)
T ss_pred CCCceEEEEEecchHHHHHHHhccceecc-----ccchHHHHHHH-------H-HHHHHHHHHHHHHhccccchhHHHHH
Confidence 58999999999999999886542211110 12222222111 0 1111110 00 000133489999999
Q ss_pred hhcCCcHHHHHHHHhHcCCCCCCcchHHHH--HHHHh---CChhHHhhhhhhcCCCCCCCCCCCcceeeccccCCCcccC
Q 037802 215 DLKRDPKGEVRKLASFLCRPFGDEDNDEVD--KVLWR---SSFERLKNLEVNKNGKLSDSGVPNSSFFRLGNVGDWQNCF 289 (312)
Q Consensus 215 DL~~d~~~~v~~I~~FLg~~~~~~~~~~l~--~iv~~---~sf~~mk~~~~~~~~~~~~~~~~~~~f~RkG~vG~Wk~~f 289 (312)
.|+.-|.+.+++|.+||++++++.. +. ..+-. .|..+. |. + ......-+.-+.--.|-..+
T Consensus 242 qLVlhPe~~mr~Il~FLdipw~d~v---LhHedlIgk~~gVsLskv---Er--S------sdQVikpVNl~AlskWvg~i 307 (378)
T KOG3988|consen 242 QLVLHPEEWMRRILKFLDIPWSDAV---LHHEDLIGKPGGVSLSKV---ER--S------SDQVIKPVNLEALSKWVGCI 307 (378)
T ss_pred HHHhCHHHHHHHHHHHhCCCcHHHH---HhHHHhcCCCCCCChhhh---hc--c------HhhhhccccHHHHHHHhccC
Confidence 9999999999999999999998764 21 11110 011000 00 0 00011112334556899999
Q ss_pred cHHHHHHHHHHHHhhcCCCCC
Q 037802 290 TDEMKQGLDEITCKKFEGSGL 310 (312)
Q Consensus 290 s~eq~~~~~~~~~e~l~~~g~ 310 (312)
+++..+.++.++ +-|+-.|+
T Consensus 308 p~dvvrdma~iA-PmL~~LGY 327 (378)
T KOG3988|consen 308 PEDVVRDMADIA-PMLAILGY 327 (378)
T ss_pred CHHHHHHHHHHH-HHHHHhCC
Confidence 999999988764 44444444
No 6
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=98.23 E-value=1.2e-06 Score=77.70 Aligned_cols=92 Identities=23% Similarity=0.342 Sum_probs=48.0
Q ss_pred CCceEEEEee-CccceeehhhhhhhccC--CCC-C---C--------CCCHHHHHHHhhcCccccCChHHHHHHHHHHHh
Q 037802 138 SECKIVYIAR-NPKDTFVSLWHFFNQIL--PPN-T---E--------PYRLEKAYDSFIKGIHLFGPFHDHVLEYWQESL 202 (312)
Q Consensus 138 ~~~k~I~ivR-dPrDv~vS~~~~~~~~~--~~~-~---~--------~~~~~~~~~~f~~g~~~~g~~~~~~~~~w~~~~ 202 (312)
++.++||+.| |...-+||++.-.+... ... + . .-++++... .+. .......-|....
T Consensus 112 ~~~~~I~L~R~d~l~QAvS~~~A~qtg~w~~~~~~~~~~r~~~~~~~~yd~~~i~~-~i~-------~i~~~~~~w~~~f 183 (245)
T PF09037_consen 112 GDVKFIHLRRRDLLRQAVSLWRARQTGVWHQHADGTRDERVSPPRKPRYDFEEIAH-LID-------RIEDQEAFWRNWF 183 (245)
T ss_dssp TS-EEEEEE-S-HHHHHHHHHHHHHHS-----------TT----------HHHHHH-HHH-------HHHHHHHHHHHHH
T ss_pred CCeEEEEEEeCCHHHHHHHHHHHHhCCCcccCCCCCccccccccccceeCHHHHHH-HHH-------HHHHHHHHHHHHH
Confidence 3599999997 99999999987544321 000 0 0 001111111 110 0011111122111
Q ss_pred -cCCCcEEEEechhhcCCcHHHHHHHHhHcCCCCCC
Q 037802 203 -KNPNKLLFLKYEDLKRDPKGEVRKLASFLCRPFGD 237 (312)
Q Consensus 203 -~~~~~vl~v~YEDL~~d~~~~v~~I~~FLg~~~~~ 237 (312)
....+-+.|.||||.+||.+++.+|++|||++...
T Consensus 184 ~~~~i~pl~i~YEdL~~dp~~~~~~Vl~fLgv~~~~ 219 (245)
T PF09037_consen 184 ARHGIEPLEITYEDLLADPQKTVARVLDFLGVDPPL 219 (245)
T ss_dssp HHTT---EEEEHHHHHHHHHHHHHHHHHHTTS-GGG
T ss_pred HHcCCCeeEEEHHHHHhCHHHHHHHHHHHhCCCCcc
Confidence 12235588999999999999999999999997543
No 7
>KOG3704 consensus Heparan sulfate D-glucosaminyl 3-O-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.4e-05 Score=68.49 Aligned_cols=153 Identities=19% Similarity=0.233 Sum_probs=94.5
Q ss_pred CCCccc--CCCceEEEEeeCccceeehhhhhhhccCCCCCCCCCHHHHHHHhhcC---c-------cccCChHHHHHHHH
Q 037802 131 LPESIK--NSECKIVYIARNPKDTFVSLWHFFNQILPPNTEPYRLEKAYDSFIKG---I-------HLFGPFHDHVLEYW 198 (312)
Q Consensus 131 lp~~~~--~~~~k~I~ivRdPrDv~vS~~~~~~~~~~~~~~~~~~~~~~~~f~~g---~-------~~~g~~~~~~~~~w 198 (312)
.|+.+. +++.|.|+|+|||.-.++|-|-..-..++..+ +|+.+ .|..+ . +..|-|..|+..|.
T Consensus 180 ~P~Rv~~M~pd~KLivvvR~PvtRaiSDyTQt~sk~~~~P---~fe~l--afkn~~~g~id~~w~ai~iglY~~Hle~WL 254 (360)
T KOG3704|consen 180 VPKRVYSMNPDTKLIVVVRDPVTRAISDYTQTLSKKPDIP---TFEVL--AFKNRTAGLIDTSWKAIRIGLYAVHLENWL 254 (360)
T ss_pred cchHHHhcCCCceEEEEEcCchhhhHHHHHHHHhcCCCCC---ceeee--eeecCccceeecchhhhhhhHHHHHHHHHH
Confidence 354443 68899999999999999999987655433222 33322 12211 1 23466888999987
Q ss_pred HHHhcCCCcEEEEechhhcCCcHHHHHHHHhHcCCCCCCcchHHHHHHHHhCChhHHhhhhhhcCCCCCCCCCCCcceee
Q 037802 199 QESLKNPNKLLFLKYEDLKRDPKGEVRKLASFLCRPFGDEDNDEVDKVLWRSSFERLKNLEVNKNGKLSDSGVPNSSFFR 278 (312)
Q Consensus 199 ~~~~~~~~~vl~v~YEDL~~d~~~~v~~I~~FLg~~~~~~~~~~l~~iv~~~sf~~mk~~~~~~~~~~~~~~~~~~~f~R 278 (312)
... .-.++|+|.=|-|+.||..++.++-+|||++-.-.+ .+--|++-|.-.. ..+.........=
T Consensus 255 ~yF--pL~q~lfVsGerli~dPa~E~~rVqdFLgLkr~it~--------khfyFnktKGFpC-----lkK~e~ss~prCL 319 (360)
T KOG3704|consen 255 RYF--PLRQILFVSGERLISDPAGELGRVQDFLGLKRVITD--------KHFYFNKTKGFPC-----LKKAEDSSRPRCL 319 (360)
T ss_pred HhC--chhheEEecCceeecCcHHHHHHHHHHhcccceecc--------ceeEEecCCCcee-----eeccccCCCcccc
Confidence 763 335999999999999999999999999998743221 1222333222100 0000000111110
Q ss_pred ccccCCCcccCcHHHHHHHHHHHHh
Q 037802 279 LGNVGDWQNCFTDEMKQGLDEITCK 303 (312)
Q Consensus 279 kG~vG~Wk~~fs~eq~~~~~~~~~e 303 (312)
--.-|.-..+..++.++++.+.|.+
T Consensus 320 gksKgr~hp~idp~~i~rLrefyrp 344 (360)
T KOG3704|consen 320 GKSKGRTHPHIDPEVIRRLREFYRP 344 (360)
T ss_pred ccccCCCCCCCCHHHHHHHHHHhcc
Confidence 0123455678999999999988875
No 8
>KOG3703 consensus Heparan sulfate N-deacetylase/N-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0065 Score=58.49 Aligned_cols=96 Identities=20% Similarity=0.228 Sum_probs=66.1
Q ss_pred CCCceEEEEeeCccceeehhhhhhhccCCCCCC---------CCCH-HHHHHHhhcCccccCChHHHHHHHHHHHhcCCC
Q 037802 137 NSECKIVYIARNPKDTFVSLWHFFNQILPPNTE---------PYRL-EKAYDSFIKGIHLFGPFHDHVLEYWQESLKNPN 206 (312)
Q Consensus 137 ~~~~k~I~ivRdPrDv~vS~~~~~~~~~~~~~~---------~~~~-~~~~~~f~~g~~~~g~~~~~~~~~w~~~~~~~~ 206 (312)
-|.+|+|-|.-||.|.+-|+|.|.+........ .++. ...++...+--..-|-|..|+..|.... ...
T Consensus 685 vP~AKIvtILinPadRAYSWyQHqraH~DpvAl~~~fyeVIsas~~aps~lk~lq~RClvpG~Ya~HlerWL~y~--~~~ 762 (873)
T KOG3703|consen 685 VPHAKIVTILINPADRAYSWYQHQRAHEDPVALNYSFYEVISASSSAPSALKALQNRCLVPGWYATHLERWLTYF--PAQ 762 (873)
T ss_pred CCcceEEEEEeChHHhhhHHHHHHhhcCCcceecceeEEEEecCCCCcHHHHHHHHhccCcchHHHHHHHHHHhC--Ccc
Confidence 378999999999999999999998754211100 0000 0111111111122355677888887763 346
Q ss_pred cEEEEechhhcCCcHHHHHHHHhHcCCC
Q 037802 207 KLLFLKYEDLKRDPKGEVRKLASFLCRP 234 (312)
Q Consensus 207 ~vl~v~YEDL~~d~~~~v~~I~~FLg~~ 234 (312)
++++|.=+.|..||..++..+-.|||+.
T Consensus 763 QlliiDg~qLr~~Pa~vm~~~qkfLgv~ 790 (873)
T KOG3703|consen 763 QLLIIDGQQLRTNPATVMNELQKFLGVT 790 (873)
T ss_pred cEEEEccHHhccCcHHHHHHHHHHhCCC
Confidence 8999999999999999999999999994
No 9
>KOG3922 consensus Sulfotransferases [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.0084 Score=53.60 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=60.6
Q ss_pred CCCeEEEcCCCccchHHHHHHHHHHcCCCCCCCCccccccccCCCcccceeeeeccccchHhhh--hCCCCeeEeeccCC
Q 037802 51 SDDVILASSMKTGTTWLKALCICIMGNQRKNDGDEVDQLEVKNPHDHIKCLEYFYYFNLLSKLK--DMQSPRVFNTHLPY 128 (312)
Q Consensus 51 ~~Dv~i~syPKSGtTWl~~il~~i~~~~~~~~~~~~~~l~~~~~~~~~p~le~~~~~~~~~~~~--~~~~pr~iktH~~~ 128 (312)
+.-|+----||||+|=...|+.-+.....+.. ...+.+...+-+....-..-...+. ..+.|.++.-|..|
T Consensus 78 ~~vViyNRVpKtGStTf~niaydL~ekn~F~v-------lh~nvtkn~~vlsl~dQ~qfvknIssw~e~~P~~yhgHV~F 150 (361)
T KOG3922|consen 78 MEVVIYNRVPKTGSTTFVNIAYDLSEKNGFHV-------LHINVTKNETVLSLPDQQQFVKNISSWTEMKPALYHGHVAF 150 (361)
T ss_pred ceEEEEecCCCccchhHHHHHHHHHhccCceE-------EEeeccccceeeccHHHHHHHHhhccccccCcceeeeeeee
Confidence 34566778899999988888888876554421 1111111111111000000011111 23568899999886
Q ss_pred CCCCCcccCCCceEEEEeeCccceeehhhhhhhc
Q 037802 129 SALPESIKNSECKIVYIARNPKDTFVSLWHFFNQ 162 (312)
Q Consensus 129 ~~lp~~~~~~~~k~I~ivRdPrDv~vS~~~~~~~ 162 (312)
--+.+ +--++.-+|-|+|||.+.++|+|+|.+-
T Consensus 151 ldFsk-Fgi~~PIYINvIRdPveRllS~yyflRf 183 (361)
T KOG3922|consen 151 LDFSK-FGIARPIYINVIRDPVERLLSYYYFLRF 183 (361)
T ss_pred eehhh-hCCCCceEEeeeccHHHHHHhHhhhhcc
Confidence 33222 2123467888999999999999998763
No 10
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=95.25 E-value=0.035 Score=52.76 Aligned_cols=110 Identities=11% Similarity=0.127 Sum_probs=63.2
Q ss_pred cCccCCCCeEEEcCCCccchHHHHHHHHHHcCCCCCCCCccccccccCCCcccceeeeeccccchHhhhhCCCCeeEeec
Q 037802 46 EFEALSDDVILASSMKTGTTWLKALCICIMGNQRKNDGDEVDQLEVKNPHDHIKCLEYFYYFNLLSKLKDMQSPRVFNTH 125 (312)
Q Consensus 46 ~~~~r~~Dv~i~syPKSGtTWl~~il~~i~~~~~~~~~~~~~~l~~~~~~~~~p~le~~~~~~~~~~~~~~~~pr~iktH 125 (312)
.=+|+.+-|||=|+ |||+|=++.|+.......+...+. |.. ...+-..|..-... ............++..|
T Consensus 62 ~C~P~~nIvFlKTH-KTgSSTv~nIL~Rfg~~~nL~~al---P~~-~~~~~~~P~~f~~~---~v~~~~~~~~~nIl~~H 133 (402)
T PF06990_consen 62 SCQPKTNIVFLKTH-KTGSSTVQNILFRFGEKHNLTFAL---PRG-GRNQFGYPAPFNAR---FVEGYPPGGRFNILCHH 133 (402)
T ss_pred cccccceEEEEecC-CcccHHHHHHHHHHHHHcCCEEec---CCC-CCCCCCCCCcCCcc---ccccCCCCCCceEEeeh
Confidence 34556666777665 999999999999876544332210 000 00011122110000 01111122345788889
Q ss_pred cCCCCC-CCcccCCCceEEEEeeCccceeehhhhhhhcc
Q 037802 126 LPYSAL-PESIKNSECKIVYIARNPKDTFVSLWHFFNQI 163 (312)
Q Consensus 126 ~~~~~l-p~~~~~~~~k~I~ivRdPrDv~vS~~~~~~~~ 163 (312)
+.|+.- -..+..+++++|-|+|||...+.|.|+|++..
T Consensus 134 ~rfn~~~~~~lmP~dt~yiTILRdP~~~feS~f~Yy~~~ 172 (402)
T PF06990_consen 134 MRFNRPEVRKLMPPDTKYITILRDPVSHFESSFNYYKRY 172 (402)
T ss_pred hccCHHHHHHhCCCCCeEEEEEcCHHHHHHhHHHHhhcc
Confidence 988631 11222357899999999999999999998753
No 11
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=94.41 E-value=0.045 Score=47.70 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=18.4
Q ss_pred CCCeEEEcCCCccchHHHHHHHHHHc
Q 037802 51 SDDVILASSMKTGTTWLKALCICIMG 76 (312)
Q Consensus 51 ~~Dv~i~syPKSGtTWl~~il~~i~~ 76 (312)
+..|+.+-.||||.|=+..++..+.+
T Consensus 8 ~~~i~f~~ipK~g~Ts~~~~l~~~~~ 33 (253)
T PF03567_consen 8 KHKIIFCHIPKTGGTSLKSILRRLYG 33 (253)
T ss_dssp --EEEE---SSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhh
Confidence 45688899999999999999888776
No 12
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.88 E-value=1 Score=38.44 Aligned_cols=51 Identities=18% Similarity=0.089 Sum_probs=38.4
Q ss_pred cEEEEechhhcCCcHHHHHHHHhHcCCCCCCcchHHHHHHHHhCChhHHhh
Q 037802 207 KLLFLKYEDLKRDPKGEVRKLASFLCRPFGDEDNDEVDKVLWRSSFERLKN 257 (312)
Q Consensus 207 ~vl~v~YEDL~~d~~~~v~~I~~FLg~~~~~~~~~~l~~iv~~~sf~~mk~ 257 (312)
.-+-|-||.|-+||...+..+|+.||++....-.-.+++-.+..|-+-|..
T Consensus 188 ep~riaYe~Lsadp~aava~~~ealgv~~p~a~~p~~a~qad~~s~eWv~R 238 (250)
T COG4424 188 EPIRIAYEVLSADPTAAVASVLEALGVDPPLAPAPMLARQADQRSDEWVDR 238 (250)
T ss_pred cHHHHhHHHHccCcHHHHHHHHHHhCCCCCCCcCchHHHhhhhhhHHHHHH
Confidence 456778999999999999999999999876543223556566666666654
No 13
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.44 E-value=3.6 Score=35.17 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=23.0
Q ss_pred CCeEEEcCCCccchHHHHHHHHHHcCCC
Q 037802 52 DDVILASSMKTGTTWLKALCICIMGNQR 79 (312)
Q Consensus 52 ~Dv~i~syPKSGtTWl~~il~~i~~~~~ 79 (312)
+--+|++-||||+|||-.+|...-..|+
T Consensus 6 r~Ylilt~pRSGStlLckllaatG~sG~ 33 (250)
T COG4424 6 RPYLILTTPRSGSTLLCKLLAATGCSGE 33 (250)
T ss_pred cceeEecCCCCcchHHHHHHHhcCCCCC
Confidence 3468999999999999999888765554
No 14
>KOG4651 consensus Chondroitin 6-sulfotransferase and related sulfotransferases [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=67.59 E-value=2 Score=39.77 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=26.3
Q ss_pred cCCCCeEEEcCCCccchHHHHHHHHHHcCCCC
Q 037802 49 ALSDDVILASSMKTGTTWLKALCICIMGNQRK 80 (312)
Q Consensus 49 ~r~~Dv~i~syPKSGtTWl~~il~~i~~~~~~ 80 (312)
+-+..+..|.-|||++|....|+..|.+.+.+
T Consensus 79 apk~kl~~C~I~Ksms~l~~nimc~L~n~~~y 110 (324)
T KOG4651|consen 79 APKYKLIYCEIPKSMSTLWTNIMCLLYNETQY 110 (324)
T ss_pred CCCCceEEEeecccHhhhhhhhheeEeChhhh
Confidence 44678899999999999999998888766543
No 15
>KOG4157 consensus beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=38.74 E-value=35 Score=32.69 Aligned_cols=171 Identities=16% Similarity=0.147 Sum_probs=85.3
Q ss_pred hhcCccCCCCeEEEcCCCccchHHHHHHHHHHcCCCCCCCCccccccccCCCcccceeeeeccccchHhhhhCCCCeeEe
Q 037802 44 KSEFEALSDDVILASSMKTGTTWLKALCICIMGNQRKNDGDEVDQLEVKNPHDHIKCLEYFYYFNLLSKLKDMQSPRVFN 123 (312)
Q Consensus 44 ~~~~~~r~~Dv~i~syPKSGtTWl~~il~~i~~~~~~~~~~~~~~l~~~~~~~~~p~le~~~~~~~~~~~~~~~~pr~ik 123 (312)
...+.|-...+-+.|.|+.|+||.+.++..+..--... ........+...+ .|. .......-..+|
T Consensus 197 ~~~~~p~ss~~~~st~~~~~~t~~~~~~~tat~~~t~s-----~y~~g~~~~~~~~-~~~--------n~~~~~~~~~~~ 262 (418)
T KOG4157|consen 197 ARSSLPSSTAVPLSSFPGLGNTWARYLIQQATGFLTGS-----IYKDGGLLKTGFP-GER--------NHVCNSNVSLVK 262 (418)
T ss_pred ccccCCCCCcccceeeeecccceeeeeeeceeeEeeee-----EEecccccccccc-ccc--------cccccceeeeee
Confidence 34556666668899999999999998877754210000 0000000000000 000 000011224566
Q ss_pred eccCCCCCCCcccCCCceEEEEeeCccceeehhhhhhhccCCCCCCCCCHHH-HHHHhhcCccccCChHHHHHHHHHHHh
Q 037802 124 THLPYSALPESIKNSECKIVYIARNPKDTFVSLWHFFNQILPPNTEPYRLEK-AYDSFIKGIHLFGPFHDHVLEYWQESL 202 (312)
Q Consensus 124 tH~~~~~lp~~~~~~~~k~I~ivRdPrDv~vS~~~~~~~~~~~~~~~~~~~~-~~~~f~~g~~~~g~~~~~~~~~w~~~~ 202 (312)
+|.... +. .......|.++|+|.=.++.........+.....+..+.. .++.+..+ ..-.|-.|..+ |..
T Consensus 263 ~~~~~~--~v--~~~~~~~i~ll~~~~~~~~~~~~r~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~ss~~~~-w~~-- 333 (418)
T KOG4157|consen 263 TGEWGS--VV--GAVFSAAILLLRDPEKAYIAEFNRKSGGHIGFASPKSYKSKKWPQFVSN--KLSGWSSHTLS-WAR-- 333 (418)
T ss_pred cceecc--ee--eecchhheeeeccccccccccccccccccccccccchhccccccccccC--CCCCccccchh-hhc--
Confidence 776544 11 0122356777788775555444322211100000001110 01111111 11234455566 443
Q ss_pred cCCCcEEEEechhhcCCcHHHHHHHHhHcCCCCCCc
Q 037802 203 KNPNKLLFLKYEDLKRDPKGEVRKLASFLCRPFGDE 238 (312)
Q Consensus 203 ~~~~~vl~v~YEDL~~d~~~~v~~I~~FLg~~~~~~ 238 (312)
...+++.+.||+|..++...+..+..|+|++..++
T Consensus 334 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (418)
T KOG4157|consen 334 -KGTGSLVVFYDDLVHPTVAPLRLIVDFLQHPVPES 368 (418)
T ss_pred -ccccceeEEeecccccccccccccccccCcccccc
Confidence 22366999999999999999999999999776654
No 16
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=38.35 E-value=40 Score=23.22 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=30.9
Q ss_pred hhcCCcHHHHHHHHhHc---CCCCCCcchHHHHHHHHhCChhHHhhhhhhcCCCCCCCCCCCcceeeccccCCCcccCcH
Q 037802 215 DLKRDPKGEVRKLASFL---CRPFGDEDNDEVDKVLWRSSFERLKNLEVNKNGKLSDSGVPNSSFFRLGNVGDWQNCFTD 291 (312)
Q Consensus 215 DL~~d~~~~v~~I~~FL---g~~~~~~~~~~l~~iv~~~sf~~mk~~~~~~~~~~~~~~~~~~~f~RkG~vG~Wk~~fs~ 291 (312)
...+||..+...|..-| |.+++... |.+++... | + ++..-.|+..||+
T Consensus 7 ~v~~~p~~s~~~i~~~l~~~~~~vS~~T---I~r~L~~~-------------g------------~-~~~~~~~kP~Ls~ 57 (72)
T PF01498_consen 7 MVRRNPRISAREIAQELQEAGISVSKST---IRRRLREA-------------G------------L-KKRKARKKPFLSP 57 (72)
T ss_dssp ---------HHHHHHHT---T--S-HHH---HHHHHHHT--------------------------E-EEETTEEEES--H
T ss_pred HHHHCCCCCHHHHHHHHHHccCCcCHHH---HHHHHHHc-------------C------------c-cccccccCCCCCH
Confidence 45578899999999999 98888776 77665321 1 1 2466678889999
Q ss_pred HHHHHHHHHHHhhc
Q 037802 292 EMKQGLDEITCKKF 305 (312)
Q Consensus 292 eq~~~~~~~~~e~l 305 (312)
.+.+.=-+.+.+++
T Consensus 58 ~~~~~Rl~fA~~h~ 71 (72)
T PF01498_consen 58 KHKKKRLEFAKEHL 71 (72)
T ss_dssp HHHHHHHHHH----
T ss_pred HHHHHHHHHhhhcc
Confidence 98877666666554
No 17
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=36.47 E-value=56 Score=28.83 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=37.5
Q ss_pred CccccCChHHHHHHHHHHHhcCCCcEEEEechhhc--CCc---HHHHHHHHhHcCCCCCC
Q 037802 183 GIHLFGPFHDHVLEYWQESLKNPNKLLFLKYEDLK--RDP---KGEVRKLASFLCRPFGD 237 (312)
Q Consensus 183 g~~~~g~~~~~~~~~w~~~~~~~~~vl~v~YEDL~--~d~---~~~v~~I~~FLg~~~~~ 237 (312)
|....|....-+.+|..++. ....+++|.||.- +.. ...+.+.+++||+++++
T Consensus 12 G~LHlG~~~~al~n~l~ar~--~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~ 69 (239)
T cd00808 12 GFLHIGGARTALFNYLFARK--HGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDE 69 (239)
T ss_pred CcccHHHHHHHHHHHHHHHH--cCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCc
Confidence 55566777778888877753 2468999999962 222 24566667899999986
No 18
>COG1158 Rho Transcription termination factor [Transcription]
Probab=33.49 E-value=42 Score=31.31 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=21.5
Q ss_pred CCCCeEEEcCCCccc-hHHHHHHHHHHcC
Q 037802 50 LSDDVILASSMKTGT-TWLKALCICIMGN 77 (312)
Q Consensus 50 r~~Dv~i~syPKSGt-TWl~~il~~i~~~ 77 (312)
+..--+||+-||+|- |.||.|...|..+
T Consensus 172 kGQR~LIVAPPkaGKT~lLq~IA~aIt~N 200 (422)
T COG1158 172 KGQRGLIVAPPKAGKTTLLQNIANAITTN 200 (422)
T ss_pred CCceeeEecCCCCCchHHHHHHHHHHhcC
Confidence 466789999999995 5677777777654
No 19
>PF04036 DUF372: Domain of unknown function (DUF372); InterPro: IPR007179 This is a group of proteins of unknown function. It is found N-terminal to another domain of unknown function (IPR007181 from INTERPRO).; PDB: 2I52_B 2IEC_D 2OGF_C.
Probab=31.18 E-value=31 Score=21.01 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=14.2
Q ss_pred hHcCCCCCCcchHHHHHHHHh
Q 037802 229 SFLCRPFGDEDNDEVDKVLWR 249 (312)
Q Consensus 229 ~FLg~~~~~~~~~~l~~iv~~ 249 (312)
+|.|.|++++....++++++.
T Consensus 17 QF~GtPvs~~~~~~le~aie~ 37 (38)
T PF04036_consen 17 QFVGTPVSPETAESLEKAIEE 37 (38)
T ss_dssp HHTT-EESTTTHHHHHHHHHH
T ss_pred HhcCCcCCcchHHHHHHHHhc
Confidence 699999998764556666653
No 20
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=29.94 E-value=61 Score=25.85 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=17.2
Q ss_pred eEEEcCCCccchHHH-HHHHHHHcCC
Q 037802 54 VILASSMKTGTTWLK-ALCICIMGNQ 78 (312)
Q Consensus 54 v~i~syPKSGtTWl~-~il~~i~~~~ 78 (312)
|.||++..||-|.+- .|+..+...+
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 679999999976555 4555555444
No 21
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=29.80 E-value=44 Score=18.89 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=11.9
Q ss_pred CCccchHHHHHHHHH
Q 037802 60 MKTGTTWLKALCICI 74 (312)
Q Consensus 60 PKSGtTWl~~il~~i 74 (312)
-|||.+|+..-+..+
T Consensus 7 yKsGK~Wv~a~~~~~ 21 (29)
T TIGR03715 7 YKSGKQWVFAAITTL 21 (29)
T ss_pred EecccHHHHHHHHHH
Confidence 489999999876654
No 22
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=28.94 E-value=85 Score=19.49 Aligned_cols=34 Identities=21% Similarity=0.085 Sum_probs=22.3
Q ss_pred hhcCCcHHHHHHHHhHcCCCCCCcch--HHHHHHHH
Q 037802 215 DLKRDPKGEVRKLASFLCRPFGDEDN--DEVDKVLW 248 (312)
Q Consensus 215 DL~~d~~~~v~~I~~FLg~~~~~~~~--~~l~~iv~ 248 (312)
||.+-+..+++.||.-+|++-..... ++|.+|++
T Consensus 1 eL~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~ 36 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIEGYSKMRKQELIFAILK 36 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHHH
Confidence 56677889999999999997543332 45666654
No 23
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=28.86 E-value=55 Score=25.43 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=15.4
Q ss_pred eEEEcCCCcc-chHHHHHHHH
Q 037802 54 VILASSMKTG-TTWLKALCIC 73 (312)
Q Consensus 54 v~i~syPKSG-tTWl~~il~~ 73 (312)
|++++.|=|| |||.+++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 7899999999 5677776433
No 24
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=24.93 E-value=1.8e+02 Score=19.26 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=21.5
Q ss_pred CcEEEEechhhcCCcHHHHHHHHhHcCC
Q 037802 206 NKLLFLKYEDLKRDPKGEVRKLASFLCR 233 (312)
Q Consensus 206 ~~vl~v~YEDL~~d~~~~v~~I~~FLg~ 233 (312)
+-++.|-+||...++..-+++-++||-.
T Consensus 15 dG~~siE~ED~~~~~~~G~~~a~~~lr~ 42 (55)
T PF07582_consen 15 DGWLSIEHEDALMDPEEGAREAAAFLRK 42 (55)
T ss_dssp -SEEEE---STTTSHHHHHHHHHHHHHT
T ss_pred CceEEEEeecCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999743
No 25
>cd01038 Endonuclease_DUF559 Domain of unknown function, appears to be related to a diverse group of endonucleases.
Probab=23.10 E-value=78 Score=23.92 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=23.2
Q ss_pred CcEEEEechhhcCCcHHHHHHHHhHc
Q 037802 206 NKLLFLKYEDLKRDPKGEVRKLASFL 231 (312)
Q Consensus 206 ~~vl~v~YEDL~~d~~~~v~~I~~FL 231 (312)
-.|+-++++|+..+|..++.+|.+.|
T Consensus 82 w~vlR~~~~dv~~~~~~~~~~I~~~l 107 (108)
T cd01038 82 FRVLRFWNNEVLRNIEAVLEAILAAL 107 (108)
T ss_pred CEEEEEEHHHHhhCHHHHHHHHHHHh
Confidence 37899999999999999999998765
No 26
>PRK09767 hypothetical protein; Provisional
Probab=21.86 E-value=94 Score=24.13 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=25.8
Q ss_pred CcEEEEechhhcCCcHHHHHHHHhHcCCC
Q 037802 206 NKLLFLKYEDLKRDPKGEVRKLASFLCRP 234 (312)
Q Consensus 206 ~~vl~v~YEDL~~d~~~~v~~I~~FLg~~ 234 (312)
-.|+-+..+|+..|+..++..|.+.|+..
T Consensus 85 ~~VlRf~n~dV~~~~~~Vl~~I~~~l~~~ 113 (117)
T PRK09767 85 WTVLRFWNNEIDCNEEAVLEIILQELNRR 113 (117)
T ss_pred CEEEEEEHHHHHhCHHHHHHHHHHHHhcc
Confidence 37888889999999999999999998764
No 27
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=21.16 E-value=2.2e+02 Score=24.90 Aligned_cols=53 Identities=11% Similarity=0.156 Sum_probs=36.4
Q ss_pred CccccCChHHHHHHHHHHHhcCCCcEEEEechhhcCC--c---HHHHHHHHhHcCCCCCC
Q 037802 183 GIHLFGPFHDHVLEYWQESLKNPNKLLFLKYEDLKRD--P---KGEVRKLASFLCRPFGD 237 (312)
Q Consensus 183 g~~~~g~~~~~~~~~w~~~~~~~~~vl~v~YEDL~~d--~---~~~v~~I~~FLg~~~~~ 237 (312)
|....|.-..-+.+|..++. . +--+++|.||.=.. . ...+.+-+++||+.+++
T Consensus 12 G~lHlG~~r~al~n~l~Ar~-~-~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~ 69 (230)
T cd00418 12 GYLHIGHARTALFNFAFARK-Y-GGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDE 69 (230)
T ss_pred CcccHHHHHHHHHHHHHHHH-c-CCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCC
Confidence 44455666666778777643 2 46789999998442 2 34566667799999986
Done!