BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037803
         (553 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8Z8X0|PHNV_SALTI Putative 2-aminoethylphosphonate transport system permease protein
           PhnV OS=Salmonella typhi GN=phnV PE=3 SV=1
          Length = 263

 Score = 33.5 bits (75), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 16/100 (16%)

Query: 380 MVVALMQKATIRVGGHLLNAITIEHFILRLPYHSKYTFSKGAKNDEMTARFMFGLELSEP 439
           + V LM   + R  G L +  T+ HF+  L          GA  D + A    G   S  
Sbjct: 28  LAVILMSSLSQRWNGILPSGFTLNHFVNAL---------HGAAWDALLASLTIGFCAS-- 76

Query: 440 LVTFALSCGSWSSPAVRVYTASEVESELEVAKREYLQAAV 479
              FAL CG W++ A+R Y    V+++  ++   YL +A+
Sbjct: 77  --LFALLCGVWAALALRQY---GVKTQKWLSMVFYLPSAI 111


>sp|Q1LUA6|TRIO_DANRE Triple functional domain protein OS=Danio rerio GN=trio PE=3 SV=1
          Length = 3028

 Score = 32.7 bits (73), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 201 KQTMRHLDRQKIQLACRLQNPENEGARTISVPDERESGDDGPNRISEDIVRCLSTILLRM 260
           K  +  +D +  +L  R+Q+ E+   RT+ VP  +  G   PN  ++ +V  ++ +L ++
Sbjct: 210 KAPVEEVDNEGQRLLQRIQSSESYANRTVPVPPGQREGQGQPNADTQGLVPRITALLEKL 269

Query: 261 SSGKRKGTSENLH 273
            S     T +NLH
Sbjct: 270 HS-----TRQNLH 277


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.132    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,723,984
Number of Sequences: 539616
Number of extensions: 7862925
Number of successful extensions: 23353
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 23280
Number of HSP's gapped (non-prelim): 194
length of query: 553
length of database: 191,569,459
effective HSP length: 123
effective length of query: 430
effective length of database: 125,196,691
effective search space: 53834577130
effective search space used: 53834577130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)