Query 037803
Match_columns 553
No_of_seqs 249 out of 561
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:33:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04784 DUF547: Protein of un 100.0 7.3E-39 1.6E-43 287.9 11.3 112 342-475 1-117 (117)
2 PF14389 Lzipper-MIP1: Leucine 99.9 2E-25 4.4E-30 191.2 11.3 88 21-108 1-88 (88)
3 PF07106 TBPIP: Tat binding pr 87.3 2.5 5.5E-05 40.3 7.9 67 27-102 71-137 (169)
4 cd00089 HR1 Protein kinase C-r 86.4 2.7 5.9E-05 34.6 6.6 64 30-106 4-67 (72)
5 PRK11020 hypothetical protein; 70.2 13 0.00028 33.8 5.9 61 32-108 2-62 (118)
6 KOG0995 Centromere-associated 68.0 24 0.00052 40.2 8.8 72 20-109 258-329 (581)
7 KOG4271 Rho-GTPase activating 67.4 2.2 4.7E-05 50.5 0.7 81 16-99 821-904 (1100)
8 PF02403 Seryl_tRNA_N: Seryl-t 62.4 36 0.00077 29.9 7.4 73 29-109 30-102 (108)
9 PF03962 Mnd1: Mnd1 family; I 61.3 47 0.001 32.6 8.6 27 74-100 103-129 (188)
10 KOG0804 Cytoplasmic Zn-finger 59.8 16 0.00035 40.4 5.5 83 16-105 370-452 (493)
11 PF12240 Angiomotin_C: Angiomo 55.7 1.1E+02 0.0024 30.6 10.1 67 33-99 8-89 (205)
12 PF08172 CASP_C: CASP C termin 55.4 96 0.0021 31.9 10.0 29 31-59 2-30 (248)
13 PLN02678 seryl-tRNA synthetase 55.4 73 0.0016 35.6 9.8 86 17-110 20-107 (448)
14 PRK10884 SH3 domain-containing 54.4 17 0.00037 36.3 4.3 25 22-46 87-111 (206)
15 PRK11637 AmiB activator; Provi 54.0 50 0.0011 36.2 8.3 13 437-449 405-417 (428)
16 PF09726 Macoilin: Transmembra 53.0 67 0.0014 37.9 9.4 77 25-107 542-623 (697)
17 PRK05431 seryl-tRNA synthetase 51.9 85 0.0019 34.6 9.7 77 27-111 27-103 (425)
18 PRK11637 AmiB activator; Provi 50.2 68 0.0015 35.1 8.6 29 77-105 92-120 (428)
19 PF09457 RBD-FIP: FIP domain ; 49.7 29 0.00063 26.9 4.0 24 77-100 3-33 (48)
20 PF15619 Lebercilin: Ciliary p 47.0 23 0.0005 35.0 3.9 70 30-99 120-189 (194)
21 PF06698 DUF1192: Protein of u 46.8 29 0.00063 28.0 3.7 25 75-99 22-46 (59)
22 PF10805 DUF2730: Protein of u 46.6 1.7E+02 0.0037 26.0 9.0 65 21-103 28-94 (106)
23 PF02185 HR1: Hr1 repeat; Int 45.7 82 0.0018 25.6 6.4 25 35-59 1-25 (70)
24 cd07596 BAR_SNX The Bin/Amphip 45.6 1.9E+02 0.0042 27.6 10.1 68 30-108 112-179 (218)
25 TIGR02231 conserved hypothetic 44.5 37 0.00079 38.2 5.5 33 74-106 138-170 (525)
26 PF07544 Med9: RNA polymerase 43.9 1.7E+02 0.0037 24.9 8.2 57 31-102 24-80 (83)
27 PF09726 Macoilin: Transmembra 43.6 1.2E+02 0.0027 35.7 9.7 69 25-104 415-483 (697)
28 PRK14127 cell division protein 43.5 41 0.00088 30.4 4.6 29 77-105 40-68 (109)
29 KOG1760 Molecular chaperone Pr 42.0 85 0.0018 29.1 6.3 86 20-108 22-122 (131)
30 PRK11239 hypothetical protein; 41.7 42 0.00091 33.8 4.8 30 75-104 184-213 (215)
31 PF04102 SlyX: SlyX; InterPro 41.4 1.6E+02 0.0034 24.2 7.4 50 32-99 1-50 (69)
32 COG1579 Zn-ribbon protein, pos 40.1 1.5E+02 0.0032 30.5 8.5 34 25-58 49-82 (239)
33 PF09744 Jnk-SapK_ap_N: JNK_SA 39.5 66 0.0014 30.9 5.6 62 31-99 53-114 (158)
34 TIGR03007 pepcterm_ChnLen poly 39.4 1.2E+02 0.0027 33.5 8.6 26 22-47 155-180 (498)
35 PF10458 Val_tRNA-synt_C: Valy 38.5 2.1E+02 0.0046 23.1 8.2 63 33-100 2-65 (66)
36 COG4942 Membrane-bound metallo 37.7 1.9E+02 0.004 32.2 9.3 31 28-58 38-68 (420)
37 PF03148 Tektin: Tektin family 36.9 77 0.0017 34.5 6.3 86 18-103 248-346 (384)
38 PF01920 Prefoldin_2: Prefoldi 36.6 1E+02 0.0022 26.4 6.0 79 27-105 11-93 (106)
39 KOG0977 Nuclear envelope prote 35.8 81 0.0018 36.0 6.4 76 29-107 107-195 (546)
40 TIGR03755 conj_TIGR03755 integ 35.8 95 0.0021 34.3 6.7 71 36-107 308-382 (418)
41 PLN02320 seryl-tRNA synthetase 34.8 2.7E+02 0.0059 31.7 10.3 75 27-110 92-166 (502)
42 PTZ00446 vacuolar sorting prot 34.3 1.9E+02 0.0041 28.7 8.0 54 36-99 131-184 (191)
43 cd00632 Prefoldin_beta Prefold 34.2 1.9E+02 0.0041 25.3 7.4 76 30-105 15-94 (105)
44 PTZ00464 SNF-7-like protein; P 34.1 1.3E+02 0.0028 30.2 7.0 50 36-91 125-174 (211)
45 PF14197 Cep57_CLD_2: Centroso 33.1 1.3E+02 0.0027 25.0 5.6 63 32-101 2-67 (69)
46 KOG2070 Guanine nucleotide exc 32.4 66 0.0014 36.3 4.8 44 16-59 611-654 (661)
47 TIGR00414 serS seryl-tRNA synt 31.9 3E+02 0.0066 30.3 10.0 74 28-109 30-104 (418)
48 PF13851 GAS: Growth-arrest sp 31.7 1.4E+02 0.0031 29.5 6.8 67 31-105 65-131 (201)
49 PRK09039 hypothetical protein; 31.6 1.6E+02 0.0034 31.7 7.5 32 28-59 74-105 (343)
50 PF12761 End3: Actin cytoskele 31.5 1.8E+02 0.004 28.9 7.4 35 70-104 156-190 (195)
51 PF08614 ATG16: Autophagy prot 31.2 70 0.0015 31.3 4.5 74 28-105 67-140 (194)
52 PF07716 bZIP_2: Basic region 30.0 1.3E+02 0.0027 23.3 4.9 26 76-101 27-52 (54)
53 PF07957 DUF3294: Protein of u 29.8 1.5E+02 0.0032 30.0 6.5 34 32-65 74-109 (216)
54 TIGR02338 gimC_beta prefoldin, 29.1 3E+02 0.0065 24.4 7.8 76 32-107 21-100 (110)
55 PF09032 Siah-Interact_N: Siah 28.4 64 0.0014 27.6 3.1 42 37-95 5-47 (79)
56 PRK13729 conjugal transfer pil 28.0 1.1E+02 0.0023 34.5 5.6 23 77-99 100-122 (475)
57 PF11932 DUF3450: Protein of u 27.9 2.3E+02 0.005 28.7 7.8 33 75-107 50-82 (251)
58 TIGR03752 conj_TIGR03752 integ 27.7 1.9E+02 0.0042 32.5 7.5 70 22-105 67-140 (472)
59 KOG0996 Structural maintenance 27.7 1.1E+02 0.0023 38.0 5.8 92 5-98 754-851 (1293)
60 PRK01203 prefoldin subunit alp 27.6 1.1E+02 0.0024 28.5 4.8 30 76-105 2-31 (130)
61 PF10224 DUF2205: Predicted co 27.6 2.5E+02 0.0054 24.1 6.6 21 26-46 14-34 (80)
62 KOG4010 Coiled-coil protein TP 27.4 93 0.002 30.8 4.4 18 77-94 47-64 (208)
63 PF03961 DUF342: Protein of un 27.3 2.5E+02 0.0054 31.1 8.4 75 28-107 334-408 (451)
64 PF09727 CortBP2: Cortactin-bi 27.3 3.3E+02 0.0072 27.1 8.3 53 31-108 137-189 (192)
65 TIGR03185 DNA_S_dndD DNA sulfu 26.8 2.8E+02 0.0061 32.2 9.1 63 31-107 226-288 (650)
66 COG3937 Uncharacterized conser 26.7 86 0.0019 28.3 3.8 33 72-104 66-106 (108)
67 PF10186 Atg14: UV radiation r 26.7 77 0.0017 32.2 4.1 85 25-109 67-154 (302)
68 PF04201 TPD52: Tumour protein 26.5 99 0.0021 29.9 4.4 33 72-104 27-66 (162)
69 smart00338 BRLZ basic region l 26.0 1.5E+02 0.0032 23.6 4.8 16 79-94 45-60 (65)
70 PF15361 RIC3: Resistance to i 25.9 62 0.0013 30.8 2.9 28 27-54 123-151 (152)
71 cd06890 PX_Bem1p The phosphoin 25.7 2.1E+02 0.0045 25.5 6.2 56 35-99 36-91 (112)
72 KOG4673 Transcription factor T 25.6 3.1E+02 0.0067 32.4 8.7 59 32-108 708-766 (961)
73 PF13107 DUF3964: Protein of u 25.4 35 0.00076 30.1 1.0 16 343-359 89-104 (109)
74 KOG4674 Uncharacterized conser 25.1 69 0.0015 41.4 3.9 82 24-105 801-882 (1822)
75 PF03148 Tektin: Tektin family 24.8 3.7E+02 0.0081 29.2 9.1 87 18-104 47-146 (384)
76 PRK05729 valS valyl-tRNA synth 24.2 2.6E+02 0.0057 33.7 8.4 64 32-100 808-872 (874)
77 PF05266 DUF724: Protein of un 24.0 4.4E+02 0.0094 26.0 8.6 29 77-105 155-183 (190)
78 PF04880 NUDE_C: NUDE protein, 23.7 1.3E+02 0.0028 29.2 4.7 27 78-104 21-47 (166)
79 cd03742 SOCS_Rab40 SOCS (suppr 23.4 88 0.0019 23.8 2.7 36 467-502 6-42 (43)
80 PF07439 DUF1515: Protein of u 23.4 2.1E+02 0.0046 26.0 5.6 28 72-99 38-65 (112)
81 PF13805 Pil1: Eisosome compon 23.2 3.8E+02 0.0082 28.1 8.2 36 75-110 166-201 (271)
82 PF14282 FlxA: FlxA-like prote 23.0 4.6E+02 0.0099 23.3 7.8 60 27-107 18-77 (106)
83 TIGR01005 eps_transp_fam exopo 22.9 5.4E+02 0.012 30.3 10.6 80 30-109 239-337 (754)
84 PF15372 DUF4600: Domain of un 22.8 5.7E+02 0.012 23.9 8.4 58 50-109 27-86 (129)
85 PF15147 DUF4578: Domain of un 22.2 38 0.00083 30.8 0.7 11 445-455 5-16 (127)
86 PF08657 DASH_Spc34: DASH comp 22.1 2E+02 0.0044 29.8 6.1 33 18-50 177-209 (259)
87 TIGR01010 BexC_CtrB_KpsE polys 21.7 3.7E+02 0.008 28.6 8.2 67 26-101 168-234 (362)
88 PF04799 Fzo_mitofusin: fzo-li 21.6 3E+02 0.0065 26.9 6.7 24 76-99 122-145 (171)
89 PF08826 DMPK_coil: DMPK coile 21.6 46 0.00099 27.1 1.0 35 12-46 23-57 (61)
90 PRK13182 racA polar chromosome 21.6 3.1E+02 0.0067 26.7 6.9 21 75-95 126-146 (175)
91 PF05529 Bap31: B-cell recepto 21.4 3.6E+02 0.0079 26.0 7.5 31 75-105 155-185 (192)
92 PRK10265 chaperone-modulator p 21.1 1.4E+02 0.0031 26.2 4.1 24 76-99 73-96 (101)
93 KOG1937 Uncharacterized conser 21.0 5.8E+02 0.013 28.8 9.4 75 31-107 348-422 (521)
94 smart00338 BRLZ basic region l 21.0 2.5E+02 0.0054 22.3 5.2 26 77-102 36-61 (65)
95 PF12795 MscS_porin: Mechanose 20.8 4.2E+02 0.009 26.6 8.0 40 70-109 146-187 (240)
96 KOG2685 Cystoskeletal protein 20.8 4.9E+02 0.011 28.9 8.8 84 17-100 274-370 (421)
97 PF08946 Osmo_CC: Osmosensory 20.3 1.5E+02 0.0034 22.8 3.5 22 75-96 5-34 (46)
98 PF09325 Vps5: Vps5 C terminal 20.3 5.9E+02 0.013 24.9 8.9 35 73-107 162-196 (236)
99 cd07627 BAR_Vps5p The Bin/Amph 20.2 8.4E+02 0.018 24.1 9.9 69 28-107 108-176 (216)
No 1
>PF04784 DUF547: Protein of unknown function, DUF547; InterPro: IPR006869 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans and Arabidopsis thaliana (Mouse-ear cress).
Probab=100.00 E-value=7.3e-39 Score=287.90 Aligned_cols=112 Identities=41% Similarity=0.679 Sum_probs=105.9
Q ss_pred ccCCCCCChhhhHHHHHHHHHHHHHHHHHhcCCCCChHHH---HhhccceEEEECCEeeeHHHHHhhhccCCCCCCcccc
Q 037803 342 SFNLENLNHQEKLAFWINIYNSCMMNAFLENGIPESPEMV---VALMQKATIRVGGHLLNAITIEHFILRLPYHSKYTFS 418 (553)
Q Consensus 342 ~Vdl~~Ls~~EKLAFwINiYNalvmHa~L~~G~P~s~~~~---~~~~~ka~y~IGG~~~Sl~dIEh~ILR~~~~~~~~~~ 418 (553)
+||++.|+++||+|||||+||+|+||+++++|+|.+..++ ..||.+..|+|||+.+||+||||+|||++..
T Consensus 1 ~v~~~~l~~~e~lAFwIN~yNal~~h~~l~~~~~~s~~~~~~~~~~~~~~~y~Igg~~~SL~dIe~~ILR~~~~------ 74 (117)
T PF04784_consen 1 RVDLSSLSREEKLAFWINLYNALVLHAILENGPPKSILDRKLGGSFFSKVRYNIGGQRFSLDDIEHGILRGNRP------ 74 (117)
T ss_pred CcChHHCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhcccccccceEEEECCEEecHHHHHHhhccCCCC------
Confidence 5899999999999999999999999999999999899887 6899999999999999999999999998532
Q ss_pred CCCCChhhhHhHhcCCCCCCCeeeeeeccCCCCCCCCc--ccChhhHHHHHHHHHHHHH
Q 037803 419 KGAKNDEMTARFMFGLELSEPLVTFALSCGSWSSPAVR--VYTASEVESELEVAKREYL 475 (553)
Q Consensus 419 ~~~~~~~~d~r~~~~L~~~ePrIhFAL~cGs~SsP~lr--vYta~~l~~qLe~a~~efl 475 (553)
.++||||||||+||++|||+|| +|||++|++||++|+++||
T Consensus 75 ----------------~~~DprihFaL~cgs~s~P~lr~~~yt~~~l~~qL~~a~~~fi 117 (117)
T PF04784_consen 75 ----------------PWPDPRIHFALNCGSKSCPPLRREAYTAENLDEQLEEAAREFI 117 (117)
T ss_pred ----------------CCCCCceeeeeecCCCCChhhhhhccCHHHHHHHHHHHHHhhC
Confidence 1779999999999999999999 9999999999999999997
No 2
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=99.93 E-value=2e-25 Score=191.24 Aligned_cols=88 Identities=41% Similarity=0.715 Sum_probs=85.3
Q ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 21 SRRASNAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHF 100 (553)
Q Consensus 21 ~r~~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l 100 (553)
|||.+.+++|.+|||||.+||++|++|+++|+|||+|++++.++++++|.+||++|++||+|||+||+||++||+||++|
T Consensus 1 ~rk~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 1 KRKQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 037803 101 RQDLYREA 108 (553)
Q Consensus 101 ~~~L~qe~ 108 (553)
+++||+|+
T Consensus 81 ~~~l~~q~ 88 (88)
T PF14389_consen 81 YRQLFQQR 88 (88)
T ss_pred HHHHHhcC
Confidence 99999873
No 3
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.34 E-value=2.5 Score=40.31 Aligned_cols=67 Identities=25% Similarity=0.427 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 27 AQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQ 102 (553)
Q Consensus 27 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~ 102 (553)
.+--.+|..++.+|+.+|+....-...|+.-|..-.+. | .+.+|..+|+.|+.|+..||.++..|+.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~--------~-t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSE--------P-TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------C-CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44457899999999999999888888888777421111 1 3588999999999999999999999664
No 4
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=86.43 E-value=2.7 Score=34.57 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 30 KYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYR 106 (553)
Q Consensus 30 r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~q 106 (553)
+.-+++-+..|+.+|+.|..++..+|+.+.- +...+. + .-++.+|.+...-.+++..||.+|.+
T Consensus 4 ~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~----~~~~~~------~---~~~~~~~~~l~es~~ki~~Lr~~L~k 67 (72)
T cd00089 4 RSKLQSRLERLEKELSIELKVKEGAENLLRL----YSDEKK------K---KLLAEAEQMLRESKQKLELLKMQLEK 67 (72)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCC------c---cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468999999999999999999999998741 111111 0 34567778888888888888888854
No 5
>PRK11020 hypothetical protein; Provisional
Probab=70.19 E-value=13 Score=33.81 Aligned_cols=61 Identities=26% Similarity=0.337 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037803 32 ALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYREA 108 (553)
Q Consensus 32 ~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe~ 108 (553)
.|.+|+.+|-.+|+. .|+-|..|..+.. +..+.++..||+.|+.+|.+|..+=.. .|..|+
T Consensus 2 ~~K~Eiq~L~drLD~---~~~Klaaa~~rgd----------~~~i~qf~~E~~~l~k~I~~lk~~~~~---~lske~ 62 (118)
T PRK11020 2 VEKNEIKRLSDRLDA---IRHKLAAASLRGD----------AEKYAQFEKEKATLEAEIARLKEVQSQ---KLSKEA 62 (118)
T ss_pred cHHHHHHHHHHHHHH---HHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 478999999999997 8888888876432 234677888888888888887643322 355554
No 6
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.01 E-value=24 Score=40.16 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=54.1
Q ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 20 ASRRASNAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVH 99 (553)
Q Consensus 20 ~~r~~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~ 99 (553)
.+|..+.++++.+|+-||.+.|.=+.+=.....+ ++.....|=.||+..|+|+-.|-++..+
T Consensus 258 ~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~------------------~~~~l~~l~~Eie~kEeE~e~lq~~~d~ 319 (581)
T KOG0995|consen 258 PGKEESLREKKARLQDDVNKFQAYVSQMKSKKQH------------------MEKKLEMLKSEIEEKEEEIEKLQKENDE 319 (581)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777888877776655443333333 4555688999999999999999999999
Q ss_pred HHHHHHhhhh
Q 037803 100 FRQDLYREAV 109 (553)
Q Consensus 100 l~~~L~qe~~ 109 (553)
|++++--|.+
T Consensus 320 Lk~~Ie~Q~i 329 (581)
T KOG0995|consen 320 LKKQIELQGI 329 (581)
T ss_pred HHHHHHhcCC
Confidence 9999987755
No 7
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=67.39 E-value=2.2 Score=50.50 Aligned_cols=81 Identities=14% Similarity=0.240 Sum_probs=67.4
Q ss_pred ccchhhhhcCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--hCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 037803 16 RKTTASRRASNAQRKYALQ-QDVDKLKKKLRHEENVHRALERA--FSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVR 92 (553)
Q Consensus 16 ~~~~~~r~~~~~~~r~~Le-qeV~~Lq~~L~~E~~~r~aLe~a--l~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~ 92 (553)
.-|.++|+++.+++|.+|| +|+.+||..+|.|...|.+..+. +..+.+.. ...-.|.++++-+.+++.-|.. ++
T Consensus 821 QaSder~nks~~~~rts~E~~ekgr~rs~~qapr~~rka~~k~~~lt~~~~~~--d~~~~~sktskkl~k~k~a~hD-a~ 897 (1100)
T KOG4271|consen 821 QASDERRNKSDSERRTSLEFLEKGRLRSIVQAPRLYRKACLKGGLLTNSAGGS--DLSAGPSKTSKKLEKNKLAKHD-AK 897 (1100)
T ss_pred hhhhhhcccccccccccccHhhhhhhhhccccchhHHHHHHhccCcccccccc--ccccCcccchHHHhhhcccccc-cc
Confidence 3488999999999999999 99999999999999999999998 55544432 2245889999999999999988 77
Q ss_pred HHHHHHH
Q 037803 93 LEEQVVH 99 (553)
Q Consensus 93 LE~~v~~ 99 (553)
|.+++..
T Consensus 898 lktk~~n 904 (1100)
T KOG4271|consen 898 LKTKTKN 904 (1100)
T ss_pred ccccccC
Confidence 7766655
No 8
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=62.44 E-value=36 Score=29.86 Aligned_cols=73 Identities=26% Similarity=0.322 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037803 29 RKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYREA 108 (553)
Q Consensus 29 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe~ 108 (553)
.=.+|-++...|+.+++.=+.-|..+.+.++.....- ..+.+|++|+..+=.+|..||.++..+..+++...
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~--------~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIGKLKKAG--------EDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT--------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777777777877776322211 45688999999999999999999999888777664
Q ss_pred h
Q 037803 109 V 109 (553)
Q Consensus 109 ~ 109 (553)
.
T Consensus 102 ~ 102 (108)
T PF02403_consen 102 L 102 (108)
T ss_dssp C
T ss_pred H
Confidence 3
No 9
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=61.26 E-value=47 Score=32.64 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 74 PSTKELLAEVAVLEEEVVRLEEQVVHF 100 (553)
Q Consensus 74 ~~~~eLl~EIA~lE~eV~~LE~~v~~l 100 (553)
..=.++|+++..|+.++..|+.++..+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566789999999999999999998864
No 10
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=59.79 E-value=16 Score=40.37 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=54.0
Q ss_pred ccchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 037803 16 RKTTASRRASNAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEE 95 (553)
Q Consensus 16 ~~~~~~r~~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~ 95 (553)
.+.+...++..-.+-..|+--|.+++++|++|+.+...|.+-+.--. ..+-+.-..+=+.+-..|+.|.-|++
T Consensus 370 ~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~-------~kl~~~~e~~~~~~~s~d~~I~dLqE 442 (493)
T KOG0804|consen 370 SSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWR-------GKLKELEEREKEALGSKDEKITDLQE 442 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777788999999999999999999988887552110 11222222233445566666666776
Q ss_pred HHHHHHHHHH
Q 037803 96 QVVHFRQDLY 105 (553)
Q Consensus 96 ~v~~l~~~L~ 105 (553)
||.+|=..|.
T Consensus 443 QlrDlmf~le 452 (493)
T KOG0804|consen 443 QLRDLMFFLE 452 (493)
T ss_pred HHHhHheehh
Confidence 6666544443
No 11
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=55.73 E-value=1.1e+02 Score=30.62 Aligned_cols=67 Identities=28% Similarity=0.407 Sum_probs=35.6
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhC------C-CCCCCCCCCCCCChhHHHHHHH----HHHHHHHHHHHHHHH
Q 037803 33 LQQDVDKLK----KKLRHEENVHRALERAFS------R-PLGALPRLPPYLPPSTKELLAE----VAVLEEEVVRLEEQV 97 (553)
Q Consensus 33 LeqeV~~Lq----~~L~~E~~~r~aLe~al~------~-~~~~~~~~~~~lp~~~~eLl~E----IA~lE~eV~~LE~~v 97 (553)
|+|-+.+|| ++-+-|..+|.-||+=|. + ..+.-...+..=....+++|.| |=-||.|+++.||+-
T Consensus 8 LQ~AL~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkY 87 (205)
T PF12240_consen 8 LQQALAQLQAACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKY 87 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 455556666666665552 1 1111111222233446677766 667888888888766
Q ss_pred HH
Q 037803 98 VH 99 (553)
Q Consensus 98 ~~ 99 (553)
+.
T Consensus 88 LE 89 (205)
T PF12240_consen 88 LE 89 (205)
T ss_pred HH
Confidence 54
No 12
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=55.41 E-value=96 Score=31.91 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037803 31 YALQQDVDKLKKKLRHEENVHRALERAFS 59 (553)
Q Consensus 31 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~ 59 (553)
.+|+++|..|+.++++.+.+..-||.-|.
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~ 30 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLA 30 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999998765
No 13
>PLN02678 seryl-tRNA synthetase
Probab=55.37 E-value=73 Score=35.55 Aligned_cols=86 Identities=19% Similarity=0.185 Sum_probs=62.2
Q ss_pred cchhhhhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 037803 17 KTTASRRASN--AQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLE 94 (553)
Q Consensus 17 ~~~~~r~~~~--~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE 94 (553)
.++.+|.... -+.-.+|.++-.+|+.+++.-+.-|..+.+.++.-. .-...+.+|++|+..|-++|..||
T Consensus 20 ~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k--------~~~~~~~~l~~~~~~Lk~ei~~le 91 (448)
T PLN02678 20 ESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLK--------IAKEDATELIAETKELKKEITEKE 91 (448)
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4455554322 355667888888888888888888888888775310 012456889999999999999999
Q ss_pred HHHHHHHHHHHhhhhh
Q 037803 95 EQVVHFRQDLYREAVY 110 (553)
Q Consensus 95 ~~v~~l~~~L~qe~~~ 110 (553)
.++..+..+|++..-.
T Consensus 92 ~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 92 AEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999988888877543
No 14
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.39 E-value=17 Score=36.32 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=20.9
Q ss_pred hhcCcHHHHHHHHHHHHHHHHHHHH
Q 037803 22 RRASNAQRKYALQQDVDKLKKKLRH 46 (553)
Q Consensus 22 r~~~~~~~r~~LeqeV~~Lq~~L~~ 46 (553)
...+.+++=-+||+|+.+|+.+|.+
T Consensus 87 ~~p~~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 87 TTPSLRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778899999999998877
No 15
>PRK11637 AmiB activator; Provisional
Probab=53.99 E-value=50 Score=36.15 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=9.9
Q ss_pred CCCeeeeeeccCC
Q 037803 437 SEPLVTFALSCGS 449 (553)
Q Consensus 437 ~ePrIhFAL~cGs 449 (553)
..|.+||.+.-+.
T Consensus 405 ~~~~l~fei~~~~ 417 (428)
T PRK11637 405 GRPSLYFEIRRQG 417 (428)
T ss_pred CCCeEEEEEEECC
Confidence 3689999988654
No 16
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=52.98 E-value=67 Score=37.87 Aligned_cols=77 Identities=23% Similarity=0.419 Sum_probs=57.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH---
Q 037803 25 SNAQRKYALQQDVDKLKKKLRHEENVHRALERAFS--RPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVH--- 99 (553)
Q Consensus 25 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~--~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~--- 99 (553)
+-+.||.+||.|+.+|+..|+.=++--..||.-+. +.-. .--.+.+..|+..++.+-+.=.+||.-+..
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~------~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtr 615 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE------KESEKDTEVLMSALSAMQDKNQHLENSLSAETR 615 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 35678899999999999999876666667776442 0000 112456899999999999999999998876
Q ss_pred HHHHHHhh
Q 037803 100 FRQDLYRE 107 (553)
Q Consensus 100 l~~~L~qe 107 (553)
++.+||..
T Consensus 616 iKldLfsa 623 (697)
T PF09726_consen 616 IKLDLFSA 623 (697)
T ss_pred HHHHHHHH
Confidence 77777743
No 17
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=51.92 E-value=85 Score=34.63 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 27 AQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYR 106 (553)
Q Consensus 27 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~q 106 (553)
-+.=.+|.++-.+|+.+++.=+.-|..+-+.++.... -...+.+|++|+..|-.+|..||+++..+..++.+
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~--------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKR--------KGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555678888888888888888888888888753111 01246789999999999999999999999888888
Q ss_pred hhhhh
Q 037803 107 EAVYI 111 (553)
Q Consensus 107 e~~~~ 111 (553)
....+
T Consensus 99 ~~~~i 103 (425)
T PRK05431 99 LLLRI 103 (425)
T ss_pred HHHhC
Confidence 76533
No 18
>PRK11637 AmiB activator; Provisional
Probab=50.19 E-value=68 Score=35.12 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 77 KELLAEVAVLEEEVVRLEEQVVHFRQDLY 105 (553)
Q Consensus 77 ~eLl~EIA~lE~eV~~LE~~v~~l~~~L~ 105 (553)
.++=.+|+.++.+|..|++++..++.++.
T Consensus 92 ~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 92 RETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 19
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=49.69 E-value=29 Score=26.86 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHH
Q 037803 77 KELLAEVAVLEEEVVR-------LEEQVVHF 100 (553)
Q Consensus 77 ~eLl~EIA~lE~eV~~-------LE~~v~~l 100 (553)
.||+.++.-.|.++.. ||.|+..|
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~L 33 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDNL 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999 88888883
No 20
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=47.04 E-value=23 Score=35.01 Aligned_cols=70 Identities=26% Similarity=0.342 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 30 KYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVH 99 (553)
Q Consensus 30 r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~ 99 (553)
|..|.+.+..++..|++...--..|++=+.-.......--..-=.++.++-.|+..|+.||..|.+++-.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999888887888875542222111111112346788888999999999999888866
No 21
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=46.83 E-value=29 Score=28.05 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 75 STKELLAEVAVLEEEVVRLEEQVVH 99 (553)
Q Consensus 75 ~~~eLl~EIA~lE~eV~~LE~~v~~ 99 (553)
.+.||=.=||.||.||.++|..+..
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888899999999999998876
No 22
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.64 E-value=1.7e+02 Score=26.01 Aligned_cols=65 Identities=22% Similarity=0.359 Sum_probs=43.0
Q ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCh--hHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 21 SRRASNAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPP--STKELLAEVAVLEEEVVRLEEQVV 98 (553)
Q Consensus 21 ~r~~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~--~~~eLl~EIA~lE~eV~~LE~~v~ 98 (553)
.++.+.++.-.+|++.+.+...||+. ||.-+.+ +|. .+.+|=.+|+-++.++..|+.++.
T Consensus 28 ~~~~a~~~~~~~l~~~~~~~~~Rl~~-------lE~~l~~-----------LPt~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 28 RRTYAKREDIEKLEERLDEHDRRLQA-------LETKLEH-----------LPTRDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHH-------HHHHHHh-----------CCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34455666667777777777777764 4544421 332 467778888888888888888887
Q ss_pred HHHHH
Q 037803 99 HFRQD 103 (553)
Q Consensus 99 ~l~~~ 103 (553)
.+..+
T Consensus 90 ~v~~~ 94 (106)
T PF10805_consen 90 GVSHQ 94 (106)
T ss_pred HHHHH
Confidence 74433
No 23
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=45.71 E-value=82 Score=25.60 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 037803 35 QDVDKLKKKLRHEENVHRALERAFS 59 (553)
Q Consensus 35 qeV~~Lq~~L~~E~~~r~aLe~al~ 59 (553)
|-+..|+++|+.|..++.--|+.+.
T Consensus 1 q~i~~L~~~i~~E~ki~~Gae~m~~ 25 (70)
T PF02185_consen 1 QRIEELQKKIDKELKIKEGAENMLQ 25 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999888763
No 24
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.59 E-value=1.9e+02 Score=27.56 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037803 30 KYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYREA 108 (553)
Q Consensus 30 r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe~ 108 (553)
|..+.+++..+++.|.. .+..|+++-..+ ..=|.++.+|..+|..+|.++..++.........+..|.
T Consensus 112 R~~~~~~~~~~~~~l~~---k~~~~~kl~~~~--------~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El 179 (218)
T cd07596 112 RADALLTLQSLKKDLAS---KKAQLEKLKAAP--------GIKPAKVEELEEELEEAESALEEARKRYEEISERLKEEL 179 (218)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHhhcC--------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777776666 555666654332 134568889999999999999988888888776666663
No 25
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.45 E-value=37 Score=38.23 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 74 PSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYR 106 (553)
Q Consensus 74 ~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~q 106 (553)
.+..+|..++..+|.++..|++++..|+.+|.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777788888888888888888888777753
No 26
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=43.88 E-value=1.7e+02 Score=24.89 Aligned_cols=57 Identities=28% Similarity=0.435 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 31 YALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQ 102 (553)
Q Consensus 31 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~ 102 (553)
..+.+.+..|+.+||. .|.+++. +|. |-....+-..||+.||++|....+-+..|+.
T Consensus 24 kd~~~~~~~lk~Klq~---ar~~i~~--------lpg----i~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQK---ARAAIRE--------LPG----IDRSVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHh--------CCC----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999998 6666654 122 5556688889999999999888877777654
No 27
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=43.58 E-value=1.2e+02 Score=35.70 Aligned_cols=69 Identities=23% Similarity=0.334 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 25 SNAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDL 104 (553)
Q Consensus 25 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L 104 (553)
+..+....||+||++|+-.||.-+.+-.-|..-+. .+... -+.|-.||..+-.|...||.++..|-++.
T Consensus 415 ~~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis----~l~~~-------Er~lk~eL~qlr~ene~Lq~Kl~~L~~aR 483 (697)
T PF09726_consen 415 SEPDAISRLEADVKKLRAELQSSRQSEQELRSQIS----SLTNN-------ERSLKSELSQLRQENEQLQNKLQNLVQAR 483 (697)
T ss_pred cChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh----hcccc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667999999999999987766666665542 22222 23455555555555555555555543333
No 28
>PRK14127 cell division protein GpsB; Provisional
Probab=43.50 E-value=41 Score=30.44 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 77 KELLAEVAVLEEEVVRLEEQVVHFRQDLY 105 (553)
Q Consensus 77 ~eLl~EIA~lE~eV~~LE~~v~~l~~~L~ 105 (553)
..|++|++.|++++..||+++..++.++-
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556666777777777777777555443
No 29
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=42.04 E-value=85 Score=29.12 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=55.3
Q ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCC-CCCCC------CCCC-------CChhHHHHHHHHH
Q 037803 20 ASRRASNAQRKYALQQDVDKLKKKLRHEENVHRALERA-FSRPL-GALPR------LPPY-------LPPSTKELLAEVA 84 (553)
Q Consensus 20 ~~r~~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~a-l~~~~-~~~~~------~~~~-------lp~~~~eLl~EIA 84 (553)
.++=..++.|...|++||...+.+++. +..|...- |-.-- -..|. +... |-.....|.++|+
T Consensus 22 iN~Fsrl~~R~~~lk~dik~~k~~~en---ledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~ 98 (131)
T KOG1760|consen 22 INEFSRLNSRKDDLKADIKEAKTEIEN---LEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIE 98 (131)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHH
Confidence 344455667888999999999999986 33333222 11100 01110 0111 2224455778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 037803 85 VLEEEVVRLEEQVVHFRQDLYREA 108 (553)
Q Consensus 85 ~lE~eV~~LE~~v~~l~~~L~qe~ 108 (553)
.||.++-..+..+..|+..||...
T Consensus 99 ~les~~e~I~~~m~~LK~~LYaKF 122 (131)
T KOG1760|consen 99 ELESELESISARMDELKKVLYAKF 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999873
No 30
>PRK11239 hypothetical protein; Provisional
Probab=41.72 E-value=42 Score=33.79 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 75 STKELLAEVAVLEEEVVRLEEQVVHFRQDL 104 (553)
Q Consensus 75 ~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L 104 (553)
...+|-.+|+.||.||+.|+.++..|+.+|
T Consensus 184 ~~~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 184 VDGDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334566777777777777777777766554
No 31
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=41.39 E-value=1.6e+02 Score=24.21 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 32 ALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVH 99 (553)
Q Consensus 32 ~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~ 99 (553)
.||+-|..|+.+|-...+.-..|..++ .+.=.+|..|+..+..|.+++.+
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v------------------~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVV------------------TEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHT---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999988888766666654 23334555555555555555555
No 32
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=40.06 E-value=1.5e+02 Score=30.48 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=26.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 25 SNAQRKYALQQDVDKLKKKLRHEENVHRALERAF 58 (553)
Q Consensus 25 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al 58 (553)
.....-..|+++|.+++..+++...-..-++..+
T Consensus 49 ~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 49 ALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456688999999999999888777788777
No 33
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=39.45 E-value=66 Score=30.90 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 31 YALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVH 99 (553)
Q Consensus 31 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~ 99 (553)
..|+.|+.+|+.+.+.|...|...|.-+. ...-.+-...++|..=|+.||+++-.|+..+.+
T Consensus 53 ~~L~~d~e~L~~q~~~ek~~r~~~e~~l~-------~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 53 ELLREDNEQLETQYEREKELRKQAEEELL-------ELEDQWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46888999999999999999988886442 011123456788989999999999888877766
No 34
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=39.41 E-value=1.2e+02 Score=33.53 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=18.6
Q ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHH
Q 037803 22 RRASNAQRKYALQQDVDKLKKKLRHE 47 (553)
Q Consensus 22 r~~~~~~~r~~LeqeV~~Lq~~L~~E 47 (553)
++......+.-|++++.+++++|.+-
T Consensus 155 ~~~~~~~~~~fl~~ql~~~~~~L~~a 180 (498)
T TIGR03007 155 KRQDSDSAQRFIDEQIKTYEKKLEAA 180 (498)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456677899999999999863
No 35
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=38.47 E-value=2.1e+02 Score=23.06 Aligned_cols=63 Identities=24% Similarity=0.349 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 33 LQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPST-KELLAEVAVLEEEVVRLEEQVVHF 100 (553)
Q Consensus 33 LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~-~eLl~EIA~lE~eV~~LE~~v~~l 100 (553)
++.|+.+|+++|..=+.--..+++-|+++... ..-|+.+ .+--+-++.++.++..|+.++..|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~-----~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFV-----EKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHH-----HHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc-----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67788888888887555555566666543221 1133333 333445677788888888877664
No 36
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=37.68 E-value=1.9e+02 Score=32.18 Aligned_cols=31 Identities=23% Similarity=0.496 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 28 QRKYALQQDVDKLKKKLRHEENVHRALERAF 58 (553)
Q Consensus 28 ~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al 58 (553)
+++...++|++++++.+....+-+.-|++.+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~l 68 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQL 68 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667789999999999999888888888866
No 37
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=36.85 E-value=77 Score=34.46 Aligned_cols=86 Identities=21% Similarity=0.252 Sum_probs=57.9
Q ss_pred chhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-------------CCCCCCCCCChhHHHHHHHHH
Q 037803 18 TTASRRASNAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLG-------------ALPRLPPYLPPSTKELLAEVA 84 (553)
Q Consensus 18 ~~~~r~~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~-------------~~~~~~~~lp~~~~eLl~EIA 84 (553)
++.+|-.-..+.+..||....+..+++.+-+.--..|+.|+....+ .-|....+-.++-..|+.||.
T Consensus 248 al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~ 327 (384)
T PF03148_consen 248 ALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVK 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHH
Confidence 4445555555666677777777777766666666677777663222 123344555667788999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037803 85 VLEEEVVRLEEQVVHFRQD 103 (553)
Q Consensus 85 ~lE~eV~~LE~~v~~l~~~ 103 (553)
.|+..|..|.+++......
T Consensus 328 ~l~~~i~~L~~~L~~a~~~ 346 (384)
T PF03148_consen 328 ELRESIEALQEKLDEAEAS 346 (384)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998874433
No 38
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=36.59 E-value=1e+02 Score=26.39 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 037803 27 AQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELL----AEVAVLEEEVVRLEEQVVHFRQ 102 (553)
Q Consensus 27 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl----~EIA~lE~eV~~LE~~v~~l~~ 102 (553)
+.....+.+.+..|+.++++=..+...|+.+-..........+.++.....+++ .+++.+|.+|..|+..+..+..
T Consensus 11 ~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~ 90 (106)
T PF01920_consen 11 NQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEK 90 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777778888877754444444444322211111223344444444433 4455666666666666666555
Q ss_pred HHH
Q 037803 103 DLY 105 (553)
Q Consensus 103 ~L~ 105 (553)
.+.
T Consensus 91 ~l~ 93 (106)
T PF01920_consen 91 KLK 93 (106)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 39
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=35.84 E-value=81 Score=36.05 Aligned_cols=76 Identities=25% Similarity=0.377 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC------CCCCCCChhHHHHHHHHHHHHHHHHHHHH-------
Q 037803 29 RKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALP------RLPPYLPPSTKELLAEVAVLEEEVVRLEE------- 95 (553)
Q Consensus 29 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~------~~~~~lp~~~~eLl~EIA~lE~eV~~LE~------- 95 (553)
.|..+|+||.+|+.++.+ ++.-++++...-.+..- .....+-.+..-+...|+.||+|+.+|-+
T Consensus 107 ~ra~~e~ei~kl~~e~~e---lr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~ 183 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKE---LRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLRE 183 (546)
T ss_pred HHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 467899999999988877 66666666543222110 11122333444455566666666555444
Q ss_pred HHHHHHHHHHhh
Q 037803 96 QVVHFRQDLYRE 107 (553)
Q Consensus 96 ~v~~l~~~L~qe 107 (553)
+|..+|.+|.+|
T Consensus 184 ~l~~~r~~ld~E 195 (546)
T KOG0977|consen 184 ELARARKQLDDE 195 (546)
T ss_pred HHHHHHHHHHHH
Confidence 444445555555
No 40
>TIGR03755 conj_TIGR03755 integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown.
Probab=35.79 E-value=95 Score=34.35 Aligned_cols=71 Identities=21% Similarity=0.279 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--C--CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037803 36 DVDKLKKKLRHEENVHRALERAFSR--P--LGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYRE 107 (553)
Q Consensus 36 eV~~Lq~~L~~E~~~r~aLe~al~~--~--~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe 107 (553)
|..-|-.||-.|.++.+++|+||-- . .|..-+.-.-.+.-..++=..|+.|+-||..|+-++ ++|+.|-.+
T Consensus 308 dq~~l~~RLA~EiA~a~~~ekALl~RR~L~tG~~ePnva~~~~A~~~~~~~i~~LDrEI~~Lk~E~-~lRk~l~~n 382 (418)
T TIGR03755 308 DQSLLVQRLASEIALADTLEKALLMRRMLLTGLQEPNVAANKPAQQEVDKAIDKLDREINNLKTEL-ELRKELASN 382 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 5667889999999999999999862 1 121111113345556667777888888888777665 346666544
No 41
>PLN02320 seryl-tRNA synthetase
Probab=34.82 E-value=2.7e+02 Score=31.67 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 27 AQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYR 106 (553)
Q Consensus 27 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~q 106 (553)
-+.=.+|.++-.+|+.++++=+.-|..+-+.++.. .-+..+.+|++|+..|-.++..||+++..+..+|.+
T Consensus 92 vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~---------~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 92 LELVLELYENMLALQKEVERLRAERNAVANKMKGK---------LEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677777777777777777777777776431 012467899999999999999999999998888887
Q ss_pred hhhh
Q 037803 107 EAVY 110 (553)
Q Consensus 107 e~~~ 110 (553)
....
T Consensus 163 ~~l~ 166 (502)
T PLN02320 163 EAQS 166 (502)
T ss_pred HHHh
Confidence 7543
No 42
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=34.29 E-value=1.9e+02 Score=28.71 Aligned_cols=54 Identities=20% Similarity=0.418 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 36 DVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVH 99 (553)
Q Consensus 36 eV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~ 99 (553)
+|..|...++++.+...-+-.||+++.+ ..+ .=-||.+|++.||.| .||++++.
T Consensus 131 kVd~lmDei~E~~e~~~EIseaLs~~~~------~~~--DEdELe~ELe~Le~e--~l~~~ll~ 184 (191)
T PTZ00446 131 KVEKIIDTIQENKDIQEEINQALSFNLL------NNV--DDDEIDKELDLLKEQ--TMEEKLLK 184 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCC------CCC--CHHHHHHHHHHHHHH--HHHHHHHH
Confidence 6899999999999999999999975421 113 348899999999885 56666554
No 43
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=34.22 E-value=1.9e+02 Score=25.32 Aligned_cols=76 Identities=17% Similarity=0.130 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 30 KYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKE----LLAEVAVLEEEVVRLEEQVVHFRQDLY 105 (553)
Q Consensus 30 r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~e----Ll~EIA~lE~eV~~LE~~v~~l~~~L~ 105 (553)
...|-+....|..++.+=..+-..|+..=........-.+.++.....+ |=..++.+|.+|..|+.++..+..++-
T Consensus 15 ~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~ 94 (105)
T cd00632 15 LQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLK 94 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666655555555543211111111223334433333 334456777777777777777666654
No 44
>PTZ00464 SNF-7-like protein; Provisional
Probab=34.10 E-value=1.3e+02 Score=30.20 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 037803 36 DVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVV 91 (553)
Q Consensus 36 eV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~ 91 (553)
+|..|...++++.....-+-.+|+++.+.. .-+. =-||.+|++.||.|+.
T Consensus 125 ~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~----~~~D--EdELe~ELe~Le~e~~ 174 (211)
T PTZ00464 125 KVEDLQDELADLYEDTQEIQEIMGRAYDVP----DDID--EDEMLGELDALDFDME 174 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CCCC--HHHHHHHHHHHHHHHh
Confidence 578888888888888888888888764321 1123 3789999999998853
No 45
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=33.12 E-value=1.3e+02 Score=25.00 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 32 ALQQDVDKLKKKLR---HEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFR 101 (553)
Q Consensus 32 ~LeqeV~~Lq~~L~---~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~ 101 (553)
.||.+|..||.+|. .+..++...-+.|.+-.. ..-.++.....|+.-|=.||..|.+++..++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd-------~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERD-------SAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 58888999988873 344444444444432100 0112445566666666666666666655543
No 46
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=32.43 E-value=66 Score=36.28 Aligned_cols=44 Identities=30% Similarity=0.345 Sum_probs=35.0
Q ss_pred ccchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037803 16 RKTTASRRASNAQRKYALQQDVDKLKKKLRHEENVHRALERAFS 59 (553)
Q Consensus 16 ~~~~~~r~~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~ 59 (553)
.+++..-=.+..+.-..|+||-.++++.|++|+..|+-||+-+.
T Consensus 611 ekslvdtvyalkd~v~~lqqd~~kmkk~leeEqkaRrdLe~ll~ 654 (661)
T KOG2070|consen 611 EKSLVDTVYALKDEVSELQQDNKKMKKVLEEEQKARRDLEKLLR 654 (661)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555666678999999999999999999999998764
No 47
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=31.94 E-value=3e+02 Score=30.31 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 28 QRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPS-TKELLAEVAVLEEEVVRLEEQVVHFRQDLYR 106 (553)
Q Consensus 28 ~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~-~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~q 106 (553)
+.=.+|-++-.+|+.++++=+.-|..+-+.++..... ... +.+|++++..|-++|..||+++..+..+++.
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~--------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQ--------KKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446677777777777777777777777777541111 012 6899999999999999999999998888887
Q ss_pred hhh
Q 037803 107 EAV 109 (553)
Q Consensus 107 e~~ 109 (553)
...
T Consensus 102 ~~~ 104 (418)
T TIGR00414 102 KLL 104 (418)
T ss_pred HHH
Confidence 754
No 48
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=31.65 E-value=1.4e+02 Score=29.53 Aligned_cols=67 Identities=24% Similarity=0.311 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 31 YALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLY 105 (553)
Q Consensus 31 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~ 105 (553)
..+++||..|+++|.+-..-..+|..+-.+- ..+-...+.|=.|-.+||..+..||+.-..|+..+.
T Consensus 65 ~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl--------~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 65 KKAEEEVEELRKQLKNYEKDKQSLQNLKARL--------KELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999888888877765321 224567788888888888888888888777665554
No 49
>PRK09039 hypothetical protein; Validated
Probab=31.58 E-value=1.6e+02 Score=31.69 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037803 28 QRKYALQQDVDKLKKKLRHEENVHRALERAFS 59 (553)
Q Consensus 28 ~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~ 59 (553)
.+...|+++|.+|+.+|..=+..|.-|+.++.
T Consensus 74 ~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 74 QGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34467999999999999888888888888765
No 50
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=31.51 E-value=1.8e+02 Score=28.93 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=27.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 70 PYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDL 104 (553)
Q Consensus 70 ~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L 104 (553)
...+...+.+-.+|..+|+.|--||.|+.+=+..|
T Consensus 156 ~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL 190 (195)
T PF12761_consen 156 SKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQEL 190 (195)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888999999999999999997744433
No 51
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=31.21 E-value=70 Score=31.25 Aligned_cols=74 Identities=23% Similarity=0.273 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 28 QRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLY 105 (553)
Q Consensus 28 ~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~ 105 (553)
..-.++++-+.+|+..|.+=...+.-|..=+......+ ..+-..+.+.-..|+.|+.++..|+..+.+|...|-
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l----~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ 140 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDEL----QELEKELSEKERRLAELEAELAQLEEKIKDLEEELK 140 (194)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccc----chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777777777777664444444433332211111 223445555666666666666666666666555554
No 52
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=29.97 E-value=1.3e+02 Score=23.33 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 76 TKELLAEVAVLEEEVVRLEEQVVHFR 101 (553)
Q Consensus 76 ~~eLl~EIA~lE~eV~~LE~~v~~l~ 101 (553)
+.+|-.+|..|+.++..|++++..|+
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666644
No 53
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=29.84 E-value=1.5e+02 Score=30.01 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCCCCC
Q 037803 32 ALQQDVDKLKKKLR--HEENVHRALERAFSRPLGAL 65 (553)
Q Consensus 32 ~LeqeV~~Lq~~L~--~E~~~r~aLe~al~~~~~~~ 65 (553)
.|-|.|.+||.||. +|+++|++...-...+...+
T Consensus 74 DLVQLV~ELQgQLd~lEeRsiRR~~NS~~~~~~d~l 109 (216)
T PF07957_consen 74 DLVQLVGELQGQLDNLEERSIRRTVNSTKTDDDDLL 109 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccc
Confidence 69999999999997 68888888877666554433
No 54
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=29.07 E-value=3e+02 Score=24.36 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037803 32 ALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTK----ELLAEVAVLEEEVVRLEEQVVHFRQDLYRE 107 (553)
Q Consensus 32 ~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~----eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe 107 (553)
.+.+....|+.++++=..+...|+..=....+.-+-.+.++..... +|=..|..+|.+|..||++...++.++-.-
T Consensus 21 ~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 21 AVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKEL 100 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444444443211111111223344554444 444556788888999988888888777543
No 55
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=28.35 E-value=64 Score=27.59 Aligned_cols=42 Identities=31% Similarity=0.508 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHH-HHHHHHHHHHHHHHHH
Q 037803 37 VDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKEL-LAEVAVLEEEVVRLEE 95 (553)
Q Consensus 37 V~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eL-l~EIA~lE~eV~~LE~ 95 (553)
+.+|+.-|++ ++..|+.|=.. .++++ -.||.-||.||.+|++
T Consensus 5 i~eL~~Dl~E---l~~Ll~~a~R~--------------rVk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 5 IEELQLDLEE---LKSLLEQAKRK--------------RVKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp HHHHHHHHHH---HHHHHHHTTTC--------------CHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHH---HHHHHHHhhHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554 55666665421 23444 4678888888888775
No 56
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.02 E-value=1.1e+02 Score=34.49 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037803 77 KELLAEVAVLEEEVVRLEEQVVH 99 (553)
Q Consensus 77 ~eLl~EIA~lE~eV~~LE~~v~~ 99 (553)
+++-+.|..||.|+..|+.++..
T Consensus 100 ~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 100 GDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 55667777888888888888744
No 57
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.87 E-value=2.3e+02 Score=28.67 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037803 75 STKELLAEVAVLEEEVVRLEEQVVHFRQDLYRE 107 (553)
Q Consensus 75 ~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe 107 (553)
+.++|+.||..|+.|+..||.|...+...+-.+
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q 82 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQ 82 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666555544
No 58
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.75 E-value=1.9e+02 Score=32.51 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=45.2
Q ss_pred hhcCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 037803 22 RRASNAQRKYALQQDVDKLKKKL----RHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQV 97 (553)
Q Consensus 22 r~~~~~~~r~~LeqeV~~Lq~~L----~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v 97 (553)
+-+..+.+-.+|+.|=++|+++. +.|.++..-+..|+.. ..++|..|+..|..|+..|+..+
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~--------------~~~~~~~~~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS--------------ETQELTKEIEQLKSERQQLQGLI 132 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444322 2245566666666642 34789999999999999999999
Q ss_pred HHHHHHHH
Q 037803 98 VHFRQDLY 105 (553)
Q Consensus 98 ~~l~~~L~ 105 (553)
.+|..+|.
T Consensus 133 ~~l~~~l~ 140 (472)
T TIGR03752 133 DQLQRRLA 140 (472)
T ss_pred HHHHHHHh
Confidence 99888884
No 59
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.67 E-value=1.1e+02 Score=38.02 Aligned_cols=92 Identities=25% Similarity=0.249 Sum_probs=0.0
Q ss_pred cccccccccccccchhhhhc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHH
Q 037803 5 VEMPITKVTGARKTTASRRA------SNAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKE 78 (553)
Q Consensus 5 ~~~~~~~~~~~~~~~~~r~~------~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~e 78 (553)
|--+|++++|+.-|+..| . +....+.+|+....++...+.++..+...+...=.+-...-..+ .-+-..++.
T Consensus 754 mtGGG~~v~~g~mg~~~~-~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l-~~~~~~~k~ 831 (1293)
T KOG0996|consen 754 MTGGGKKVKGGRMGTSIR-VTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRL-EKLTASVKR 831 (1293)
T ss_pred ccCCCCcCCCCCCCCccc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHH-HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037803 79 LLAEVAVLEEEVVRLEEQVV 98 (553)
Q Consensus 79 Ll~EIA~lE~eV~~LE~~v~ 98 (553)
+..+|+.||-.|..+|..++
T Consensus 832 ~~~~~~~l~~~i~~~E~~~~ 851 (1293)
T KOG0996|consen 832 LAELIEYLESQIAELEAAVL 851 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhh
No 60
>PRK01203 prefoldin subunit alpha; Provisional
Probab=27.64 E-value=1.1e+02 Score=28.52 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 76 TKELLAEVAVLEEEVVRLEEQVVHFRQDLY 105 (553)
Q Consensus 76 ~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~ 105 (553)
++++++|+-+++++|..|.+++..|+....
T Consensus 2 ~~~~~~~~~~~~~q~e~l~~ql~~L~~a~s 31 (130)
T PRK01203 2 ARDVEAQLNYIESLISSVDSQIDSLNKTLS 31 (130)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999877664
No 61
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=27.57 E-value=2.5e+02 Score=24.08 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=14.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 037803 26 NAQRKYALQQDVDKLKKKLRH 46 (553)
Q Consensus 26 ~~~~r~~LeqeV~~Lq~~L~~ 46 (553)
..+.|..|.++|..||.-|+.
T Consensus 14 ~~e~k~~Li~ei~~LQ~sL~~ 34 (80)
T PF10224_consen 14 EKEEKEELIQEILELQDSLEA 34 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888877777654
No 62
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=27.36 E-value=93 Score=30.81 Aligned_cols=18 Identities=50% Similarity=0.678 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037803 77 KELLAEVAVLEEEVVRLE 94 (553)
Q Consensus 77 ~eLl~EIA~lE~eV~~LE 94 (553)
.||-.|++-+|+||+-|-
T Consensus 47 eelr~EL~kvEeEI~TLr 64 (208)
T KOG4010|consen 47 EELRTELAKVEEEIVTLR 64 (208)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467789999999998874
No 63
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.33 E-value=2.5e+02 Score=31.09 Aligned_cols=75 Identities=23% Similarity=0.397 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037803 28 QRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYRE 107 (553)
Q Consensus 28 ~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe 107 (553)
++...|++++.+++++|.+ +...|...-.. ......+.......+.+......+..++..|+.++..|+.+|.+-
T Consensus 334 ~~~~~l~~~~~~~~~~l~~---l~~~l~~l~~~--~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEK---LKKNLKKLKKL--KKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhhhhh--cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3335566666666555554 22233322211 112223333444556667777777777777777777766666543
No 64
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=27.32 E-value=3.3e+02 Score=27.10 Aligned_cols=53 Identities=30% Similarity=0.452 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037803 31 YALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYREA 108 (553)
Q Consensus 31 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe~ 108 (553)
.-||+|-.+|+++|..|..-+..+|+-+ =+-++.|++|..++.+-++- |-.|+
T Consensus 137 ~lLEkEReRLkq~lE~Ek~~~~~~EkE~---------------------~K~~~~l~eE~~k~K~~~l~----Lv~E~ 189 (192)
T PF09727_consen 137 NLLEKERERLKQQLEQEKAQQKKLEKEH---------------------KKLVSQLEEERTKLKSFVLM----LVKER 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 3499999999999999999999888744 34567889999999888877 55553
No 65
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=26.78 E-value=2.8e+02 Score=32.19 Aligned_cols=63 Identities=22% Similarity=0.303 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037803 31 YALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYRE 107 (553)
Q Consensus 31 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe 107 (553)
..+++++..++.++++-..-...|+..+.... -+++.|...||.++..+|++....+.++.+.
T Consensus 226 e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~G--------------G~~~~~r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 226 EDLAQEIAHLRNELEEAQRSLESLEKKFRSEG--------------GDLFEEREQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544444444555443321 2467777888888888888888877777665
No 66
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=26.73 E-value=86 Score=28.34 Aligned_cols=33 Identities=33% Similarity=0.546 Sum_probs=20.4
Q ss_pred CChhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 037803 72 LPPSTKELLAEV--------AVLEEEVVRLEEQVVHFRQDL 104 (553)
Q Consensus 72 lp~~~~eLl~EI--------A~lE~eV~~LE~~v~~l~~~L 104 (553)
+|.++++.+.+. ..|+++|-.||++|.+|...+
T Consensus 66 ~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 66 IPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred hhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555433 467777777777777765544
No 67
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=26.67 E-value=77 Score=32.15 Aligned_cols=85 Identities=18% Similarity=0.277 Sum_probs=46.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC---CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 25 SNAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALP---RLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFR 101 (553)
Q Consensus 25 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~---~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~ 101 (553)
..+++-..|++.|.++++++++.+.--..+...+......+. ..-...-....++..++...+..+..+++.+..-|
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r 146 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRR 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444567777777777777777666666666543222111 00011223445555566666666666666666666
Q ss_pred HHHHhhhh
Q 037803 102 QDLYREAV 109 (553)
Q Consensus 102 ~~L~qe~~ 109 (553)
..+.++..
T Consensus 147 ~~l~~~l~ 154 (302)
T PF10186_consen 147 RQLIQELS 154 (302)
T ss_pred HHHHHHHH
Confidence 66666644
No 68
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=26.51 E-value=99 Score=29.93 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=22.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 037803 72 LPPSTKELLAEVAVLEEEVVRLE-------EQVVHFRQDL 104 (553)
Q Consensus 72 lp~~~~eLl~EIA~lE~eV~~LE-------~~v~~l~~~L 104 (553)
-...-.||-.|++-+|+||.-|- ++...|++.|
T Consensus 27 sEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 27 SEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34466788899999999988764 3444555555
No 69
>smart00338 BRLZ basic region leucin zipper.
Probab=26.01 E-value=1.5e+02 Score=23.64 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 037803 79 LLAEVAVLEEEVVRLE 94 (553)
Q Consensus 79 Ll~EIA~lE~eV~~LE 94 (553)
|..+|+.|+.|+..|.
T Consensus 45 L~~~~~~l~~e~~~lk 60 (65)
T smart00338 45 LKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 70
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=25.91 E-value=62 Score=30.84 Aligned_cols=28 Identities=14% Similarity=0.375 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 037803 27 AQRKYALQQDVDKLKKKLRH-EENVHRAL 54 (553)
Q Consensus 27 ~~~r~~LeqeV~~Lq~~L~~-E~~~r~aL 54 (553)
...+..=++|..+||++|.+ |+.|.++|
T Consensus 123 ~~~~~~~~~eL~qLq~rL~qTE~~m~kil 151 (152)
T PF15361_consen 123 NTKRKITDYELAQLQERLAQTERAMEKIL 151 (152)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556778999999999986 55555554
No 71
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=25.72 E-value=2.1e+02 Score=25.49 Aligned_cols=56 Identities=21% Similarity=0.146 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 35 QDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVH 99 (553)
Q Consensus 35 qeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~ 99 (553)
+|.-+||.+|.+..-. |.+..++...+|.+|..++.. ...+.+|.-...|+.|+..
T Consensus 36 ~dFy~Lh~~L~~~fp~----eag~~~~~~~lP~lP~~~~~~-----~~~~~~e~R~~~L~~Yl~~ 91 (112)
T cd06890 36 QDFYKLHIALLDLFPA----EAGRNSSKRILPYLPGPVTDV-----VNDSISLKRLNDLNEYLNE 91 (112)
T ss_pred HHHHHHHHHHHHhCcH----hhCCCCCCCcCCCCCCCccCc-----chhHHHHHHHHHHHHHHHH
Confidence 5777788888766543 222212333455555444432 5667788888888888887
No 72
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=25.56 E-value=3.1e+02 Score=32.42 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037803 32 ALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYREA 108 (553)
Q Consensus 32 ~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe~ 108 (553)
-|++|-.+|+++|..|.+--+-++.-. ..+=.||..||.+++.||+.+..++..+.|+-
T Consensus 708 llraE~~~l~~~le~e~nr~~~~~~e~------------------~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~l 766 (961)
T KOG4673|consen 708 LLRAEQGQLSKSLEKERNRAAENRQEY------------------LAAQEEADTLEGRANQLEVEIRELKRKHKQEL 766 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378888899999988887765555433 33557889999999999999888888777763
No 73
>PF13107 DUF3964: Protein of unknown function (DUF3964)
Probab=25.39 E-value=35 Score=30.10 Aligned_cols=16 Identities=38% Similarity=0.970 Sum_probs=11.2
Q ss_pred cCCCCCChhhhHHHHHH
Q 037803 343 FNLENLNHQEKLAFWIN 359 (553)
Q Consensus 343 Vdl~~Ls~~EKLAFwIN 359 (553)
|++..+ .+|.+|||+|
T Consensus 89 v~Lp~i-~~~~~AFW~N 104 (109)
T PF13107_consen 89 VNLPEI-ENQQMAFWFN 104 (109)
T ss_pred eeCchh-hHHHHHHHhh
Confidence 344443 4688999998
No 74
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=25.06 E-value=69 Score=41.41 Aligned_cols=82 Identities=23% Similarity=0.343 Sum_probs=52.4
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 24 ASNAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQD 103 (553)
Q Consensus 24 ~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~ 103 (553)
..-..+-..|+.++.+|.+.|+++..=.+-|..-+....-..-..--.+=.....++++++.++.++..||.++..|-..
T Consensus 801 ~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~ 880 (1822)
T KOG4674|consen 801 DKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKR 880 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446667899999999999999887777666655432111000001122345667777777777777777777776666
Q ss_pred HH
Q 037803 104 LY 105 (553)
Q Consensus 104 L~ 105 (553)
|-
T Consensus 881 l~ 882 (1822)
T KOG4674|consen 881 LK 882 (1822)
T ss_pred HH
Confidence 54
No 75
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=24.84 E-value=3.7e+02 Score=29.23 Aligned_cols=87 Identities=22% Similarity=0.246 Sum_probs=57.4
Q ss_pred chhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-------------CCCCCCCCChhHHHHHHHHH
Q 037803 18 TTASRRASNAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGA-------------LPRLPPYLPPSTKELLAEVA 84 (553)
Q Consensus 18 ~~~~r~~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~-------------~~~~~~~lp~~~~eLl~EIA 84 (553)
.+..|-..-+-.+..|+..+.++......=...+..||+||..-..+ -+.+...-..--.||++|+.
T Consensus 47 ~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~ 126 (384)
T PF03148_consen 47 RLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVE 126 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHH
Confidence 34445555556677777777777776666666778888887632111 12223345556789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037803 85 VLEEEVVRLEEQVVHFRQDL 104 (553)
Q Consensus 85 ~lE~eV~~LE~~v~~l~~~L 104 (553)
++|.--..|++.+...-.+|
T Consensus 127 li~~~~~lL~~~l~~~~eQl 146 (384)
T PF03148_consen 127 LIENIKRLLQRTLEQAEEQL 146 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99988888887777744444
No 76
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=24.20 E-value=2.6e+02 Score=33.75 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 037803 32 ALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLA-EVAVLEEEVVRLEEQVVHF 100 (553)
Q Consensus 32 ~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~-EIA~lE~eV~~LE~~v~~l 100 (553)
.+++|+.+|+++|++-+.--..+++-|+.+.. -..-|+.+.+.-. .++.+|+++..|++.+..|
T Consensus 808 d~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F-----~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l 872 (874)
T PRK05729 808 DVEAELARLEKELAKLEKEIERVEKKLSNEGF-----VAKAPEEVVEKEREKLAEYEEKLAKLKERLARL 872 (874)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-----hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777888888877744444445554543221 1234665554433 3477888888888877764
No 77
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=24.02 E-value=4.4e+02 Score=26.05 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 77 KELLAEVAVLEEEVVRLEEQVVHFRQDLY 105 (553)
Q Consensus 77 ~eLl~EIA~lE~eV~~LE~~v~~l~~~L~ 105 (553)
.+--+||+.++.++..+++.+.+.+.++-
T Consensus 155 e~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 155 EAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33447888888888888888888665543
No 78
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=23.70 E-value=1.3e+02 Score=29.22 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 78 ELLAEVAVLEEEVVRLEEQVVHFRQDL 104 (553)
Q Consensus 78 eLl~EIA~lE~eV~~LE~~v~~l~~~L 104 (553)
+-|.|-..|.++|-+|..++-+|++.|
T Consensus 21 ~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 21 SELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355888999999999999999977777
No 79
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=23.40 E-value=88 Score=23.76 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhccCcc-cCeEEcchhHHHhhhhhccC
Q 037803 467 LEVAKREYLQAAVGIS-SEKFAIPKLLDWYLLDFAKD 502 (553)
Q Consensus 467 Le~a~~efl~~~v~V~-~~kv~Lpki~~wY~~DFg~~ 502 (553)
|+..++.-|+..+.++ =+++-||+-++-|.++|...
T Consensus 6 LQ~LCR~~I~~~t~~~~I~~LPLP~~Lk~yLkey~~~ 42 (43)
T cd03742 6 LQDLCCRAIVSCTPVYLIDKLPLPVSIKSHLKSFAMA 42 (43)
T ss_pred HHHHHHHHHHHhCCcchhhhCCCCHHHHHHHHhcccc
Confidence 6777888888887766 56899999999999999753
No 80
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=23.40 E-value=2.1e+02 Score=25.98 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=22.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 72 LPPSTKELLAEVAVLEEEVVRLEEQVVH 99 (553)
Q Consensus 72 lp~~~~eLl~EIA~lE~eV~~LE~~v~~ 99 (553)
+=..+-||...|+.||..+..|+..|.+
T Consensus 38 mhrRlDElV~Rv~~lEs~~~~lk~dVse 65 (112)
T PF07439_consen 38 MHRRLDELVERVTTLESSVSTLKADVSE 65 (112)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 4446788999999999998888887766
No 81
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=23.22 E-value=3.8e+02 Score=28.13 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037803 75 STKELLAEVAVLEEEVVRLEEQVVHFRQDLYREAVY 110 (553)
Q Consensus 75 ~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe~~~ 110 (553)
+..+|=.|+.-+|.|+.--|.++-.+.++-..|++.
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~ 201 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYS 201 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHH
Confidence 568888999999999999999999988888888763
No 82
>PF14282 FlxA: FlxA-like protein
Probab=22.99 E-value=4.6e+02 Score=23.26 Aligned_cols=60 Identities=15% Similarity=0.339 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 27 AQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYR 106 (553)
Q Consensus 27 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~q 106 (553)
...-..|++.+..|+++|++-.. ...+++..+. .-+..|..+|.-||.+|..++.+.-+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~-------------------~~~~~~e~k~--~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ-------------------DSDLDAEQKQ--QQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-------------------ccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445788888888888876211 0224444333 44556666666666666664444444
Q ss_pred h
Q 037803 107 E 107 (553)
Q Consensus 107 e 107 (553)
+
T Consensus 77 ~ 77 (106)
T PF14282_consen 77 Q 77 (106)
T ss_pred H
Confidence 4
No 83
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=22.92 E-value=5.4e+02 Score=30.27 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CCCCC---CCCCChhHHHHHHHHHHHHHH--------------H
Q 037803 30 KYALQQDVDKLKKKLRHEENVHRALERAFSRPLG--ALPRL---PPYLPPSTKELLAEVAVLEEE--------------V 90 (553)
Q Consensus 30 r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~--~~~~~---~~~lp~~~~eLl~EIA~lE~e--------------V 90 (553)
-.+|+++....+.++..-+..-..|+..+..... ..+.. ...+.+..++|..+++.+|.+ |
T Consensus 239 L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v 318 (754)
T TIGR01005 239 LAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRV 318 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHH
Confidence 3445555555555555555555556666543211 11110 011236678888888888864 6
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 037803 91 VRLEEQVVHFRQDLYREAV 109 (553)
Q Consensus 91 ~~LE~~v~~l~~~L~qe~~ 109 (553)
..|+.++.+++.++.+|..
T Consensus 319 ~~l~~qi~~l~~~i~~e~~ 337 (754)
T TIGR01005 319 VAAKSSLADLDAQIRSELQ 337 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777888888888877754
No 84
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=22.78 E-value=5.7e+02 Score=23.93 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCCCCCCCCC--CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037803 50 VHRALERAFSRPLGALPRL--PPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYREAV 109 (553)
Q Consensus 50 ~r~aLe~al~~~~~~~~~~--~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe~~ 109 (553)
++.-++++-+.|.--+.++ -..|| ...|..=|-.||.|=..||-+|-++-..|.||..
T Consensus 27 l~~kiek~r~n~~drl~siR~ye~Ms--~~~l~~llkqLEkeK~~Le~qlk~~e~rLeQEsK 86 (129)
T PF15372_consen 27 LREKIEKIRGNPSDRLSSIRRYEQMS--VESLNQLLKQLEKEKRSLENQLKDYEWRLEQESK 86 (129)
T ss_pred HHHHHHHHhCCCccccHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666544333221 13344 4777788899999999999999999999999954
No 85
>PF15147 DUF4578: Domain of unknown function (DUF4578)
Probab=22.24 E-value=38 Score=30.83 Aligned_cols=11 Identities=64% Similarity=1.500 Sum_probs=8.6
Q ss_pred eccC-CCCCCCC
Q 037803 445 LSCG-SWSSPAV 455 (553)
Q Consensus 445 L~cG-s~SsP~l 455 (553)
|||| +||||.-
T Consensus 5 lCCggSWScPst 16 (127)
T PF15147_consen 5 LCCGGSWSCPST 16 (127)
T ss_pred cccCCCcCCchh
Confidence 5665 9999985
No 86
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=22.15 E-value=2e+02 Score=29.76 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=23.3
Q ss_pred chhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 18 TTASRRASNAQRKYALQQDVDKLKKKLRHEENV 50 (553)
Q Consensus 18 ~~~~r~~~~~~~r~~LeqeV~~Lq~~L~~E~~~ 50 (553)
|...|-.+.+.+-..|..+|..|+.++.++..-
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~q 209 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQ 209 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666677777888888888888776553
No 87
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=21.71 E-value=3.7e+02 Score=28.58 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 26 NAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFR 101 (553)
Q Consensus 26 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~ 101 (553)
..+.+.-|+++|.+++++|.+ ....|..=-... +.+ .+-..+..++.-|+.|+.++..+|.++..++
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~---ae~~l~~fr~~~-~~~-----d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~ 234 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNA---TKAELLKYQIKN-KVF-----DPKAQSSAQLSLISTLEGELIRVQAQLAQLR 234 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhC-CCc-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566789999999998877 334444322221 111 0122466788888888888888888887754
No 88
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.60 E-value=3e+02 Score=26.92 Aligned_cols=24 Identities=42% Similarity=0.505 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 76 TKELLAEVAVLEEEVVRLEEQVVH 99 (553)
Q Consensus 76 ~~eLl~EIA~lE~eV~~LE~~v~~ 99 (553)
.+||=.||+.|+.||..||.-...
T Consensus 122 ~~eL~~eI~~L~~~i~~le~~~~~ 145 (171)
T PF04799_consen 122 KNELEDEIKQLEKEIQRLEEIQSK 145 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888888865544
No 89
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.59 E-value=46 Score=27.08 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=26.0
Q ss_pred ccccccchhhhhcCcHHHHHHHHHHHHHHHHHHHH
Q 037803 12 VTGARKTTASRRASNAQRKYALQQDVDKLKKKLRH 46 (553)
Q Consensus 12 ~~~~~~~~~~r~~~~~~~r~~LeqeV~~Lq~~L~~ 46 (553)
+..+...+..|=+....+..+|+++|..|++++.+
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666667777888999999999998865
No 90
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=21.56 E-value=3.1e+02 Score=26.74 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 037803 75 STKELLAEVAVLEEEVVRLEE 95 (553)
Q Consensus 75 ~~~eLl~EIA~lE~eV~~LE~ 95 (553)
.+.|+++.|-.||.-|.++|+
T Consensus 126 e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 126 EMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666666553
No 91
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.41 E-value=3.6e+02 Score=26.04 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 75 STKELLAEVAVLEEEVVRLEEQVVHFRQDLY 105 (553)
Q Consensus 75 ~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~ 105 (553)
..+.+=+||+.|+.|+...|..+..|+.|.-
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666554
No 92
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=21.13 E-value=1.4e+02 Score=26.17 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 76 TKELLAEVAVLEEEVVRLEEQVVH 99 (553)
Q Consensus 76 ~~eLl~EIA~lE~eV~~LE~~v~~ 99 (553)
+.+||.+|..|+.|+..|++++.-
T Consensus 73 vl~LLd~i~~Lr~el~~L~~~l~~ 96 (101)
T PRK10265 73 ALTLLDEIAHLKQENRLLRQRLSR 96 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999886644
No 93
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.03 E-value=5.8e+02 Score=28.76 Aligned_cols=75 Identities=16% Similarity=0.312 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037803 31 YALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYRE 107 (553)
Q Consensus 31 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe 107 (553)
.+||||+.-+-.+.+.-+.+++-|.+++.+-.-..+. ...-.-++|++..|--.|.+|.+.=..--.|+++++.+
T Consensus 348 qeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~r--k~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~ 422 (521)
T KOG1937|consen 348 QELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQR--KVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSE 422 (521)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888887777888888887531111000 00112467888888999999988776666777777655
No 94
>smart00338 BRLZ basic region leucin zipper.
Probab=20.97 E-value=2.5e+02 Score=22.30 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 77 KELLAEVAVLEEEVVRLEEQVVHFRQ 102 (553)
Q Consensus 77 ~eLl~EIA~lE~eV~~LE~~v~~l~~ 102 (553)
..|-.|...|..+|..|+.++..|+.
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 95
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=20.78 E-value=4.2e+02 Score=26.64 Aligned_cols=40 Identities=30% Similarity=0.355 Sum_probs=32.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhh
Q 037803 70 PYLPPSTKELLAEVAVLEEEVVRLEEQVVH--FRQDLYREAV 109 (553)
Q Consensus 70 ~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~--l~~~L~qe~~ 109 (553)
..-+.....|-+|++.|+.+|..||..+.+ .|..|++...
T Consensus 146 ~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qr 187 (240)
T PF12795_consen 146 PLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQR 187 (240)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence 335667778899999999999999999987 7888887643
No 96
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=20.75 E-value=4.9e+02 Score=28.88 Aligned_cols=84 Identities=23% Similarity=0.255 Sum_probs=55.7
Q ss_pred cchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-------------CCCCCCCCChhHHHHHHHH
Q 037803 17 KTTASRRASNAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGA-------------LPRLPPYLPPSTKELLAEV 83 (553)
Q Consensus 17 ~~~~~r~~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~-------------~~~~~~~lp~~~~eLl~EI 83 (553)
...++|-.-..+.|..|+-.+.+--+...+.+.-=++||+|+....++ -|.+.-+-...-..|+.||
T Consensus 274 ~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELCrD~AQ~~L~~EV 353 (421)
T KOG2685|consen 274 LAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCRDQAQYRLVDEV 353 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHHHhHHHHHHHHHH
Confidence 344555555666677777666654444444444446788887754332 2444455566667899999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037803 84 AVLEEEVVRLEEQVVHF 100 (553)
Q Consensus 84 A~lE~eV~~LE~~v~~l 100 (553)
-.|+..|..|++++..-
T Consensus 354 ~~l~~t~~~L~~kL~eA 370 (421)
T KOG2685|consen 354 HELDDTVAALKEKLDEA 370 (421)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988773
No 97
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=20.34 E-value=1.5e+02 Score=22.76 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=8.1
Q ss_pred hHHHHHHH--------HHHHHHHHHHHHHH
Q 037803 75 STKELLAE--------VAVLEEEVVRLEEQ 96 (553)
Q Consensus 75 ~~~eLl~E--------IA~lE~eV~~LE~~ 96 (553)
.|+|||.| |.-+.++|+.||++
T Consensus 5 EAkelLqe~~d~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 5 EAKELLQEHYDNIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Confidence 46666665 44555666666655
No 98
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=20.34 E-value=5.9e+02 Score=24.87 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=26.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037803 73 PPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYRE 107 (553)
Q Consensus 73 p~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe 107 (553)
+.++..+..||+.+|..+..++++....-..+-.|
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E 196 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISENIKKE 196 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888999988888888888877755555444
No 99
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=20.18 E-value=8.4e+02 Score=24.08 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037803 28 QRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYRE 107 (553)
Q Consensus 28 ~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe 107 (553)
.+|..+-+++..++..|.. .|..+++..... ..-+.++..+-.||..+|..+...++.-..+-..+-+|
T Consensus 108 ~~R~~~~~~~~~~~~~L~k---~~~~~~Kl~~~~--------~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~E 176 (216)
T cd07627 108 AQRQKLWQYWQSAESELSK---KKAQLEKLKRQG--------KTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSE 176 (216)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhccC--------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788887777 666777754311 22467888999999999998888888777755555555
Done!