Query 037803
Match_columns 553
No_of_seqs 249 out of 561
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 07:08:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ke4_A CDC42-interacting prote 92.5 0.21 7.2E-06 42.9 6.1 74 24-100 11-88 (98)
2 3o0z_A RHO-associated protein 81.5 7.4 0.00025 36.4 9.5 88 21-108 55-156 (168)
3 3ra3_B P2F; coiled coil domain 76.7 1.9 6.3E-05 27.8 2.6 20 76-95 9-28 (28)
4 2lw1_A ABC transporter ATP-bin 72.5 15 0.00051 30.4 8.0 66 22-99 14-81 (89)
5 2lf0_A Uncharacterized protein 70.3 12 0.00041 33.0 7.1 52 31-95 6-57 (123)
6 3he5_B Synzip2; heterodimeric 70.0 9.3 0.00032 27.8 5.3 18 78-95 35-52 (52)
7 2w6b_A RHO guanine nucleotide 67.9 7.4 0.00025 29.7 4.6 40 19-58 8-47 (56)
8 1kd8_A GABH AIV, GCN4 acid bas 62.7 11 0.00038 26.3 4.2 25 74-98 8-32 (36)
9 1gmj_A ATPase inhibitor; coile 62.4 29 0.00098 28.8 7.5 23 79-101 56-78 (84)
10 3mq9_A Bone marrow stromal ant 61.2 11 0.00036 39.8 6.1 74 27-107 396-469 (471)
11 1fxk_A Prefoldin; archaeal pro 61.1 22 0.00077 29.6 7.1 80 27-106 14-104 (107)
12 4dzn_A Coiled-coil peptide CC- 60.0 18 0.00063 24.0 4.8 27 77-103 5-31 (33)
13 1x79_B RAB GTPase binding effe 58.4 46 0.0016 29.0 8.6 63 31-107 9-71 (112)
14 2zqm_A Prefoldin beta subunit 56.9 27 0.00092 29.6 6.9 81 27-107 19-110 (117)
15 1g6u_A Domain swapped dimer; d 55.9 15 0.00052 26.3 4.1 24 81-104 20-43 (48)
16 1fmh_A General control protein 55.4 23 0.00079 23.6 4.6 24 76-99 3-26 (33)
17 2wq1_A General control protein 54.8 16 0.00055 25.0 3.9 22 74-95 7-28 (33)
18 3m48_A General control protein 54.2 12 0.00041 25.7 3.2 23 73-95 6-28 (33)
19 4dzn_A Coiled-coil peptide CC- 52.9 19 0.00067 23.9 4.0 23 82-104 3-25 (33)
20 3ol1_A Vimentin; structural ge 51.5 29 0.00098 30.3 6.3 27 32-58 45-71 (119)
21 3um3_B Charged multivesicular 48.2 56 0.0019 28.0 7.4 55 36-98 7-61 (104)
22 3swk_A Vimentin; cytoskeleton, 46.9 1E+02 0.0034 25.4 8.5 55 32-104 25-79 (86)
23 3he4_A Synzip6; heterodimeric 46.2 18 0.0006 26.7 3.3 19 79-97 36-54 (56)
24 1ses_A Seryl-tRNA synthetase; 46.2 1E+02 0.0035 32.4 10.7 82 18-109 17-99 (421)
25 2dfs_A Myosin-5A; myosin-V, in 45.9 34 0.0011 40.6 7.5 24 78-101 1020-1043(1080)
26 1kd8_B GABH BLL, GCN4 acid bas 44.9 27 0.00094 24.3 3.9 26 74-99 8-33 (36)
27 1uo4_A General control protein 44.4 25 0.00084 24.3 3.5 23 73-95 7-29 (34)
28 3ol1_A Vimentin; structural ge 41.5 1.5E+02 0.005 25.7 9.3 13 33-45 67-79 (119)
29 3c3f_A Alpha/beta peptide with 40.9 35 0.0012 23.5 3.9 22 74-95 8-29 (34)
30 2l5g_B Putative uncharacterize 40.0 48 0.0016 24.0 4.7 29 77-105 5-33 (42)
31 1m1j_C Fibrinogen gamma chain; 39.9 56 0.0019 34.5 7.4 34 73-106 83-116 (409)
32 1t2k_D Cyclic-AMP-dependent tr 38.5 50 0.0017 25.2 5.1 22 77-98 39-60 (61)
33 2dfs_A Myosin-5A; myosin-V, in 37.5 1.1E+02 0.0036 36.3 10.0 27 30-56 923-949 (1080)
34 3a7p_A Autophagy protein 16; c 36.1 43 0.0015 30.7 5.0 83 17-105 5-92 (152)
35 1uii_A Geminin; human, DNA rep 35.7 72 0.0025 26.4 5.8 37 51-102 38-74 (83)
36 4dac_A Computationally designe 35.5 6.8 0.00023 25.2 -0.3 13 82-94 9-21 (28)
37 3o0z_A RHO-associated protein 34.3 21 0.00073 33.3 2.7 80 26-109 4-83 (168)
38 3ghg_A Fibrinogen alpha chain; 33.7 73 0.0025 34.7 7.0 43 31-91 113-155 (562)
39 4dci_A Uncharacterized protein 33.6 2.8E+02 0.0094 25.3 10.9 72 29-107 30-103 (150)
40 1ci6_A Transcription factor AT 33.6 66 0.0023 24.9 5.1 18 79-96 42-59 (63)
41 3hnw_A Uncharacterized protein 33.4 1.3E+02 0.0045 26.8 7.8 25 75-99 111-135 (138)
42 3qne_A Seryl-tRNA synthetase, 32.6 88 0.003 33.7 7.6 84 18-109 21-106 (485)
43 2yy0_A C-MYC-binding protein; 32.0 90 0.0031 23.5 5.4 35 72-106 17-51 (53)
44 1l8d_A DNA double-strand break 31.4 67 0.0023 27.0 5.3 27 30-56 19-45 (112)
45 3lay_A Zinc resistance-associa 31.3 2.1E+02 0.0071 26.6 9.0 56 24-90 74-129 (175)
46 3l4f_A RHO guanine nucleotide 31.0 67 0.0023 25.1 4.6 34 25-58 11-44 (61)
47 1zme_C Proline utilization tra 30.8 37 0.0013 25.8 3.3 22 83-104 46-67 (70)
48 3na7_A HP0958; flagellar bioge 30.8 1.7E+02 0.0058 28.3 8.8 34 72-105 88-121 (256)
49 2dq0_A Seryl-tRNA synthetase; 30.6 99 0.0034 32.9 7.6 74 28-109 31-104 (455)
50 2xus_A Breast cancer metastasi 30.6 47 0.0016 24.8 3.5 21 89-109 14-34 (49)
51 3c3g_A Alpha/beta peptide with 30.3 67 0.0023 22.0 3.9 22 74-95 7-28 (33)
52 3oja_B Anopheles plasmodium-re 30.0 1.7E+02 0.0059 31.2 9.5 28 77-104 533-560 (597)
53 2v71_A Nuclear distribution pr 29.5 1.3E+02 0.0043 28.6 7.2 75 23-104 37-111 (189)
54 3ra3_A P1C; coiled coil domain 28.6 27 0.00094 22.4 1.7 19 83-101 2-20 (28)
55 3he5_A Synzip1; heterodimeric 28.5 61 0.0021 23.3 3.6 28 76-103 5-46 (49)
56 3ghg_C Fibrinogen gamma chain; 28.3 1.4E+02 0.0049 31.4 8.2 76 32-107 42-117 (411)
57 1hjb_A Ccaat/enhancer binding 28.1 80 0.0027 26.2 4.9 31 76-106 45-75 (87)
58 2fxo_A Myosin heavy chain, car 27.8 1.8E+02 0.0061 25.4 7.6 83 21-107 34-123 (129)
59 1nkp_B MAX protein, MYC proto- 27.5 88 0.003 25.1 5.1 31 75-105 48-78 (83)
60 1wle_A Seryl-tRNA synthetase; 27.3 1.1E+02 0.0037 33.2 7.2 82 28-109 70-151 (501)
61 2pnv_A Small conductance calci 26.9 60 0.002 23.6 3.5 28 77-104 8-39 (43)
62 2hy6_A General control protein 26.8 83 0.0028 21.7 3.9 23 74-96 8-30 (34)
63 2lw1_A ABC transporter ATP-bin 26.7 67 0.0023 26.3 4.3 33 78-110 19-51 (89)
64 2dq3_A Seryl-tRNA synthetase; 26.1 2.2E+02 0.0074 29.9 9.2 72 28-107 30-101 (425)
65 2oxj_A Hybrid alpha/beta pepti 25.9 88 0.003 21.6 3.9 22 74-95 8-29 (34)
66 2r2v_A GCN4 leucine zipper; co 25.8 88 0.003 21.6 3.9 22 74-95 8-29 (34)
67 2wvr_A Geminin; DNA replicatio 25.3 1.6E+02 0.0054 28.2 7.0 31 75-105 116-146 (209)
68 3bas_A Myosin heavy chain, str 25.3 2.8E+02 0.0095 22.6 9.1 49 31-97 17-65 (89)
69 3okq_A BUD site selection prot 25.2 2.1E+02 0.0071 25.9 7.4 32 70-101 50-81 (141)
70 3viq_B Mating-type switching p 25.2 53 0.0018 27.3 3.3 30 77-106 4-33 (85)
71 3na7_A HP0958; flagellar bioge 23.7 4.3E+02 0.015 25.4 10.3 29 77-105 56-84 (256)
72 2dgc_A Protein (GCN4); basic d 22.9 92 0.0031 24.1 4.1 30 76-105 32-61 (63)
73 2bni_A General control protein 22.6 94 0.0032 21.4 3.5 22 74-95 8-29 (34)
74 1joc_A EEA1, early endosomal a 22.6 1.1E+02 0.0038 26.6 5.2 32 76-107 6-37 (125)
75 2akf_A Coronin-1A; coiled coil 22.4 62 0.0021 21.6 2.5 23 84-106 2-24 (32)
76 3tnu_A Keratin, type I cytoske 22.2 3.9E+02 0.013 23.2 9.6 61 31-105 41-101 (131)
77 4g1a_A AQ-C16C19 peptide; heli 22.1 42 0.0014 22.2 1.6 15 83-97 2-16 (32)
78 1gu4_A CAAT/enhancer binding p 21.7 66 0.0023 26.2 3.2 29 76-104 45-73 (78)
79 3fx0_A NF-kappa-B essential mo 21.5 2.8E+02 0.0097 23.4 7.1 38 72-109 36-76 (96)
80 1cxz_B Protein (PKN); protein- 21.4 3.5E+02 0.012 22.4 9.4 57 30-105 20-80 (86)
81 2fxo_A Myosin heavy chain, car 21.3 4E+02 0.014 23.0 8.6 28 31-58 16-43 (129)
82 1wlq_A Geminin; coiled-coil; 2 21.3 1.5E+02 0.0053 24.4 5.3 27 76-102 40-66 (83)
83 1ci6_A Transcription factor AT 21.1 1.7E+02 0.0058 22.5 5.4 30 75-104 31-60 (63)
84 2aze_B Transcription factor E2 20.9 1.2E+02 0.0042 25.8 4.9 35 72-106 4-38 (106)
85 2er8_A Regulatory protein Leu3 20.3 45 0.0016 25.6 1.9 23 81-103 49-71 (72)
No 1
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=92.54 E-value=0.21 Score=42.89 Aligned_cols=74 Identities=24% Similarity=0.322 Sum_probs=56.9
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 24 ASNAQRKYALQQDVDKLKKKLRHEENVHRALERAFS----RPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVH 99 (553)
Q Consensus 24 ~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~----~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~ 99 (553)
-+..+||..|++.|.+|++.+++|..=|.+|++..+ +|.. ..|..+-.+..|.-.+|..|+.|+-+++..+..
T Consensus 11 LPpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~---GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 11 LPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQM---GDPASLEPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGG---CCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999998875 1211 123445556667777788888888888887777
Q ss_pred H
Q 037803 100 F 100 (553)
Q Consensus 100 l 100 (553)
+
T Consensus 88 ~ 88 (98)
T 2ke4_A 88 A 88 (98)
T ss_dssp H
T ss_pred H
Confidence 4
No 2
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.53 E-value=7.4 Score=36.36 Aligned_cols=88 Identities=18% Similarity=0.128 Sum_probs=52.9
Q ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCC-CCC------CCCCChhHHHHHHHHHHHHHHH
Q 037803 21 SRRASNAQRKYALQQDVDKLKKKLRHEENVHRALERAFS---RPLGAL-PRL------PPYLPPSTKELLAEVAVLEEEV 90 (553)
Q Consensus 21 ~r~~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~---~~~~~~-~~~------~~~lp~~~~eLl~EIA~lE~eV 90 (553)
.+-......|.+||+||..||.+|..|+.-|.--..-.. .-...+ ..+ -..+-...+.|-.-|..||-|-
T Consensus 55 ~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667899999999999999999965543332111 000000 000 0011123456666777777777
Q ss_pred HHHH----HHHHHHHHHHHhhh
Q 037803 91 VRLE----EQVVHFRQDLYREA 108 (553)
Q Consensus 91 ~~LE----~~v~~l~~~L~qe~ 108 (553)
..+| =++..++..+-||.
T Consensus 135 a~~eid~~~eLKalQ~~~eqE~ 156 (168)
T 3o0z_A 135 NNLEIDLNYKLKSLQQRLEQEV 156 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHH
Confidence 7777 56777777777773
No 3
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=76.71 E-value=1.9 Score=27.82 Aligned_cols=20 Identities=40% Similarity=0.531 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037803 76 TKELLAEVAVLEEEVVRLEE 95 (553)
Q Consensus 76 ~~eLl~EIA~lE~eV~~LE~ 95 (553)
-..|-.|||.||-||+-|||
T Consensus 9 narlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 9 NARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHHHhcC
Confidence 34578899999999999986
No 4
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=72.47 E-value=15 Score=30.36 Aligned_cols=66 Identities=23% Similarity=0.195 Sum_probs=40.7
Q ss_pred hhcCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 22 RRASNAQRK--YALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVH 99 (553)
Q Consensus 22 r~~~~~~~r--~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~ 99 (553)
+|-+..++| ..|+.+|.+|+.++. .|+..|..|... ..=+..+.+|.++++.++.++..++..=..
T Consensus 14 ~KLSykeqrEle~le~~Ie~LE~~i~-------~le~~ladp~~y-----~~d~~~~~~l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 14 SKLSYKLQRELEQLPQLLEDLEAKLE-------ALQTQVADASFF-----SQPHEQTQKVLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHSTTGG-----GSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhCcccc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433 245566666655544 456656433211 112568899999999999999988876554
No 5
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=70.34 E-value=12 Score=32.98 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 037803 31 YALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEE 95 (553)
Q Consensus 31 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~ 95 (553)
..|.+|+.+|..+|+. .++-|..|..+... ..+.++..||+.|+.+|.+|..
T Consensus 6 e~~K~Eiq~L~drLD~---~~rKlaaa~~rgd~----------~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 6 EVEKNEIKRLSDRLDA---IRHQQADLSLVEAA----------DKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp CSHHHHHHHHHHHHHH---HHHHHHHSCTTTCT----------THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhCCCH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999998 88888888765322 2456777778877777777754
No 6
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=69.96 E-value=9.3 Score=27.81 Aligned_cols=18 Identities=44% Similarity=0.525 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037803 78 ELLAEVAVLEEEVVRLEE 95 (553)
Q Consensus 78 eLl~EIA~lE~eV~~LE~ 95 (553)
.|-.|||-||.||+.-||
T Consensus 35 nlrdeiarlenevasheq 52 (52)
T 3he5_B 35 NLRDEIARLENEVASHEQ 52 (52)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhccC
Confidence 377788888888876553
No 7
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=67.93 E-value=7.4 Score=29.71 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=32.6
Q ss_pred hhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 19 TASRRASNAQRKYALQQDVDKLKKKLRHEENVHRALERAF 58 (553)
Q Consensus 19 ~~~r~~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al 58 (553)
+..-=.+.++.=.+|+||..+|++-|++|+.-|+-||+.+
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~v 47 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLV 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345566778999999999999999999999999865
No 8
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=62.74 E-value=11 Score=26.32 Aligned_cols=25 Identities=40% Similarity=0.488 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 74 PSTKELLAEVAVLEEEVVRLEEQVV 98 (553)
Q Consensus 74 ~~~~eLl~EIA~lE~eV~~LE~~v~ 98 (553)
.++.+||.|-..||.||.+|+.-+-
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4678888888888888888876553
No 9
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=62.37 E-value=29 Score=28.83 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037803 79 LLAEVAVLEEEVVRLEEQVVHFR 101 (553)
Q Consensus 79 Ll~EIA~lE~eV~~LE~~v~~l~ 101 (553)
-+.||.-||.+|-+..+.|..|.
T Consensus 56 h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 56 HAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777777776644
No 10
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=61.19 E-value=11 Score=39.81 Aligned_cols=74 Identities=19% Similarity=0.181 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 27 AQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYR 106 (553)
Q Consensus 27 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~q 106 (553)
++....|+|++.++|+.|.+=+.--..-. +...+| -..|.++.-.-++-|.-||.||..|++++.+++.++-+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATAN----HTVMAL---MASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhcc----hhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556688888888887776332111100 000000 01233444445577888899999999999888877765
Q ss_pred h
Q 037803 107 E 107 (553)
Q Consensus 107 e 107 (553)
+
T Consensus 469 ~ 469 (471)
T 3mq9_A 469 L 469 (471)
T ss_dssp H
T ss_pred h
Confidence 4
No 11
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=61.14 E-value=22 Score=29.61 Aligned_cols=80 Identities=11% Similarity=0.117 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHH-----------HHHHHHHHHHHHHHHHH
Q 037803 27 AQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKE-----------LLAEVAVLEEEVVRLEE 95 (553)
Q Consensus 27 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~e-----------Ll~EIA~lE~eV~~LE~ 95 (553)
+.+...|.+.+..|+.++++=..+-..|+..=....+..+-.+.++.....+ +=.+|..||..+.+++.
T Consensus 14 q~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~ 93 (107)
T 1fxk_A 14 QQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888888888888766666666654322222112233333333222 22344455555555555
Q ss_pred HHHHHHHHHHh
Q 037803 96 QVVHFRQDLYR 106 (553)
Q Consensus 96 ~v~~l~~~L~q 106 (553)
.+..++..||+
T Consensus 94 ~l~~lk~~l~~ 104 (107)
T 1fxk_A 94 KLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 12
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=60.05 E-value=18 Score=24.03 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 77 KELLAEVAVLEEEVVRLEEQVVHFRQD 103 (553)
Q Consensus 77 ~eLl~EIA~lE~eV~~LE~~v~~l~~~ 103 (553)
..|-.|||.|..||+-|.-++..|++.
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345555555555555555555554443
No 13
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=58.40 E-value=46 Score=29.01 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037803 31 YALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYRE 107 (553)
Q Consensus 31 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe 107 (553)
..|+-++.+|+++|..+...|.-||..++ .+..+=-++|+.|=+-|-.=|+.+.+|++.+-|-
T Consensus 9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~--------------~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 9 KKLQLMLRQANDQLEKTMKDKQELEDFIK--------------QSSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999854 3566777889999999999999999998888754
No 14
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=56.87 E-value=27 Score=29.57 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChh-----------HHHHHHHHHHHHHHHHHHHH
Q 037803 27 AQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPS-----------TKELLAEVAVLEEEVVRLEE 95 (553)
Q Consensus 27 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~-----------~~eLl~EIA~lE~eV~~LE~ 95 (553)
+.+...|.+.+..|+.++++=..+-..|+..=.......+-.+.++... ...+=.+|..||..+.++++
T Consensus 19 ~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~ 98 (117)
T 2zqm_A 19 QQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNE 98 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567777777777777644444445443221111112223333332 23333455566666666666
Q ss_pred HHHHHHHHHHhh
Q 037803 96 QVVHFRQDLYRE 107 (553)
Q Consensus 96 ~v~~l~~~L~qe 107 (553)
++..++..||+-
T Consensus 99 ~l~~lk~~l~~~ 110 (117)
T 2zqm_A 99 KLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 15
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=55.86 E-value=15 Score=26.28 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 81 AEVAVLEEEVVRLEEQVVHFRQDL 104 (553)
Q Consensus 81 ~EIA~lE~eV~~LE~~v~~l~~~L 104 (553)
+|+|.||.|+.-||+++-.|+..|
T Consensus 20 eelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999998876655
No 16
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=55.42 E-value=23 Score=23.58 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 76 TKELLAEVAVLEEEVVRLEEQVVH 99 (553)
Q Consensus 76 ~~eLl~EIA~lE~eV~~LE~~v~~ 99 (553)
+..|-+|+|..|+|--.|||.|..
T Consensus 3 vaqlekevaqaeaenyqleqevaq 26 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQ 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456778888888888888888876
No 17
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=54.78 E-value=16 Score=25.05 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 037803 74 PSTKELLAEVAVLEEEVVRLEE 95 (553)
Q Consensus 74 ~~~~eLl~EIA~lE~eV~~LE~ 95 (553)
.++.|||.+...||.||.+|-.
T Consensus 7 dKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 7 DKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 4788999999999999999864
No 18
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=54.23 E-value=12 Score=25.74 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=19.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 037803 73 PPSTKELLAEVAVLEEEVVRLEE 95 (553)
Q Consensus 73 p~~~~eLl~EIA~lE~eV~~LE~ 95 (553)
-.++.+||.|-..||.||.+|-.
T Consensus 6 E~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 6 EAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 35788999999999999999864
No 19
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=52.94 E-value=19 Score=23.92 Aligned_cols=23 Identities=22% Similarity=0.586 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037803 82 EVAVLEEEVVRLEEQVVHFRQDL 104 (553)
Q Consensus 82 EIA~lE~eV~~LE~~v~~l~~~L 104 (553)
|||.|..||+-|.+++..|+..+
T Consensus 3 eiaalkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777766544
No 20
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=51.46 E-value=29 Score=30.31 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 32 ALQQDVDKLKKKLRHEENVHRALERAF 58 (553)
Q Consensus 32 ~LeqeV~~Lq~~L~~E~~~r~aLe~al 58 (553)
.++.++..++.+.++|.++|..+|..+
T Consensus 45 n~~~~~edfk~KyE~E~~~r~~~E~di 71 (119)
T 3ol1_A 45 NLAEDIMRLREKLQEEMLQREEAENTL 71 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 355667788889999999999999876
No 21
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=48.18 E-value=56 Score=28.04 Aligned_cols=55 Identities=27% Similarity=0.492 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 36 DVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVV 98 (553)
Q Consensus 36 eV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~ 98 (553)
+|.+|+..++++...-.-+-.+|+++.+.. ..+. --||.+|+..||.|. |+++++
T Consensus 7 kVe~lmDei~E~~e~~~EI~e~Ls~~~~~~----~~~D--EdELe~ELe~Le~e~--l~~~~l 61 (104)
T 3um3_B 7 KVDELMQDIADQQELAEEISTAISKPVGFG----EEFD--EDELMAELEELEQEE--LDKNLL 61 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCC----CCCC--HHHHHHHHHHHHHHH--HHHHhh
Confidence 688999999999999999999998764321 1122 378899998888763 444444
No 22
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=46.87 E-value=1e+02 Score=25.36 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 32 ALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDL 104 (553)
Q Consensus 32 ~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L 104 (553)
.++.+|..++.+.++|.++|..+|.-+. .|=+.+--+-..-+.||.+|.+|...|
T Consensus 25 n~~~~~edfk~KyE~E~~~R~~~E~d~~------------------~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 25 NLAEDIMRLREKLQEEMLQREEAENTLQ------------------SFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788899999999999999998773 233333334444556666666644433
No 23
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=46.24 E-value=18 Score=26.73 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037803 79 LLAEVAVLEEEVVRLEEQV 97 (553)
Q Consensus 79 Ll~EIA~lE~eV~~LE~~v 97 (553)
|-++||-||.+|++||+.|
T Consensus 36 lekdianlekdianlerdv 54 (56)
T 3he4_A 36 LEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4445555666666665543
No 24
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=46.20 E-value=1e+02 Score=32.43 Aligned_cols=82 Identities=22% Similarity=0.294 Sum_probs=60.9
Q ss_pred chhhhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 037803 18 TTASRRASN-AQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQ 96 (553)
Q Consensus 18 ~~~~r~~~~-~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~ 96 (553)
++.+|.... -+.=.+|.++-.+|+.++++=+.-|..+.+.++.. -...+.+|++|+..|-.+|..||++
T Consensus 17 ~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (421)
T 1ses_A 17 AIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKA----------PPEEKEALIARGKALGEEAKRLEEA 86 (421)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS----------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 344444332 34456677777778888877777888888888651 1146789999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 037803 97 VVHFRQDLYREAV 109 (553)
Q Consensus 97 v~~l~~~L~qe~~ 109 (553)
+..+..+|.....
T Consensus 87 ~~~~~~~~~~~~~ 99 (421)
T 1ses_A 87 LREKEARLEALLL 99 (421)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9998888876643
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.92 E-value=34 Score=40.58 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 78 ELLAEVAVLEEEVVRLEEQVVHFR 101 (553)
Q Consensus 78 eLl~EIA~lE~eV~~LE~~v~~l~ 101 (553)
+|=..|+.||.|...||+++.+|-
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667777777777777655
No 26
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=44.88 E-value=27 Score=24.34 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 74 PSTKELLAEVAVLEEEVVRLEEQVVH 99 (553)
Q Consensus 74 ~~~~eLl~EIA~lE~eV~~LE~~v~~ 99 (553)
.++.|||.+-..||.||.+|..-+-+
T Consensus 8 ~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 47889999999999999999765543
No 27
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=44.36 E-value=25 Score=24.32 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=19.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 037803 73 PPSTKELLAEVAVLEEEVVRLEE 95 (553)
Q Consensus 73 p~~~~eLl~EIA~lE~eV~~LE~ 95 (553)
-.++.+||.+-..||.||.+|..
T Consensus 7 EdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 7 EDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 35788999999999999999864
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=41.49 E-value=1.5e+02 Score=25.68 Aligned_cols=13 Identities=0% Similarity=0.314 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 037803 33 LQQDVDKLKKKLR 45 (553)
Q Consensus 33 LeqeV~~Lq~~L~ 45 (553)
+|.|+..|++.++
T Consensus 67 ~E~di~~lrK~lD 79 (119)
T 3ol1_A 67 AENTLQSFRQDVD 79 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccc
Confidence 3333333333333
No 29
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=40.87 E-value=35 Score=23.48 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 037803 74 PSTKELLAEVAVLEEEVVRLEE 95 (553)
Q Consensus 74 ~~~~eLl~EIA~lE~eV~~LE~ 95 (553)
.++.+||.|-..||.||.+|..
T Consensus 8 dKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 8 XKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHH
Confidence 4778999999999999999864
No 30
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=40.04 E-value=48 Score=24.01 Aligned_cols=29 Identities=17% Similarity=0.431 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 77 KELLAEVAVLEEEVVRLEEQVVHFRQDLY 105 (553)
Q Consensus 77 ~eLl~EIA~lE~eV~~LE~~v~~l~~~L~ 105 (553)
.|||.-|.-+-.||.+-|++|..|+..+-
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888888888888777664
No 31
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=39.92 E-value=56 Score=34.52 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=26.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 73 PPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYR 106 (553)
Q Consensus 73 p~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~q 106 (553)
-.+.++++.||..||.-|..-|..|..|+..|..
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~ 116 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIM 116 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 4567789999999999888777777777766543
No 32
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=38.48 E-value=50 Score=25.19 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037803 77 KELLAEVAVLEEEVVRLEEQVV 98 (553)
Q Consensus 77 ~eLl~EIA~lE~eV~~LE~~v~ 98 (553)
.+|-.||+.|+.||..|.+.|+
T Consensus 39 ~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 39 GQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4466677777777777766653
No 33
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=37.55 E-value=1.1e+02 Score=36.35 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 30 KYALQQDVDKLKKKLRHEENVHRALER 56 (553)
Q Consensus 30 r~~LeqeV~~Lq~~L~~E~~~r~aLe~ 56 (553)
...||.+|.+||.+|++++.-+..|..
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~ 949 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLE 949 (1080)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888877666665554
No 34
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=36.09 E-value=43 Score=30.71 Aligned_cols=83 Identities=14% Similarity=0.109 Sum_probs=24.9
Q ss_pred cchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChh-----HHHHHHHHHHHHHHHH
Q 037803 17 KTTASRRASNAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPS-----TKELLAEVAVLEEEVV 91 (553)
Q Consensus 17 ~~~~~r~~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~-----~~eLl~EIA~lE~eV~ 91 (553)
|.+.+-+.-..++|+.-.-|+..+- |-..-..|..||+-|. .+..-+...|++ -+.++.+|+.|+.|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~md~~--l~~rL~~Rd~~E~~~~----~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~ 78 (152)
T 3a7p_A 5 NFIITERKKAKEERSNPQTDSMDDL--LIRRLTDRNDKEAHLN----ELFQDNSGAIGGNIVSHDDALLNTLAILQKELK 78 (152)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCcchhHHHH--HHHHHHHhhhHHHHHH----HHHHhhccCCCcccccchhHHHHHHHHHHHHHH
Confidence 3444444444556666666655443 4444445555555442 222222233432 4667889999999999
Q ss_pred HHHHHHHHHHHHHH
Q 037803 92 RLEEQVVHFRQDLY 105 (553)
Q Consensus 92 ~LE~~v~~l~~~L~ 105 (553)
.|+.++.++...|-
T Consensus 79 ~l~~ki~dLeeel~ 92 (152)
T 3a7p_A 79 SKEQEIRRLKEVIA 92 (152)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999775554
No 35
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=35.74 E-value=72 Score=26.35 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=29.4
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 51 HRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQ 102 (553)
Q Consensus 51 r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~ 102 (553)
|.||+.||. .-+.|-.+|..|++||..|++....|+-
T Consensus 38 R~AL~eaL~---------------EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 38 RKALYEALK---------------ENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888773 3478888999999999999988888664
No 36
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=35.53 E-value=6.8 Score=25.23 Aligned_cols=13 Identities=54% Similarity=0.634 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 037803 82 EVAVLEEEVVRLE 94 (553)
Q Consensus 82 EIA~lE~eV~~LE 94 (553)
.+.-||.||-+||
T Consensus 9 nvkrlekevgkle 21 (28)
T 4dac_A 9 NVKRLEKEVGKLE 21 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhh
Confidence 3333444444443
No 37
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=34.28 E-value=21 Score=33.25 Aligned_cols=80 Identities=16% Similarity=0.224 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 26 NAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLY 105 (553)
Q Consensus 26 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~ 105 (553)
..++-..||..+..++..|+.|-+-..=|.+..+-..-.. ..+-..++||-.=++.|+..-.-||+.+..|+.+|.
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~----~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSI----SQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455578999999999999999987777766543100000 113345677888899999999999999999999999
Q ss_pred hhhh
Q 037803 106 REAV 109 (553)
Q Consensus 106 qe~~ 109 (553)
+|+-
T Consensus 80 qEr~ 83 (168)
T 3o0z_A 80 AERR 83 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9964
No 38
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=33.70 E-value=73 Score=34.71 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 037803 31 YALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVV 91 (553)
Q Consensus 31 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~ 91 (553)
.+|++-+..|+.+++.+...-++|+..| ++++.||--||..|.
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnL------------------edq~~kIQRLEvDId 155 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNV------------------RAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHH
Confidence 4788899999999999888888888866 778888888887773
No 39
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=33.63 E-value=2.8e+02 Score=25.25 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 037803 29 RKYALQQDVDKLKKKLRH-EENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEV-AVLEEEVVRLEEQVVHFRQDLYR 106 (553)
Q Consensus 29 ~r~~LeqeV~~Lq~~L~~-E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EI-A~lE~eV~~LE~~v~~l~~~L~q 106 (553)
....|++.+.++..+|++ |+..++++...-..+. ..+++.+++=|+.| ..+|.|...++++...|..++-|
T Consensus 30 l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~-------~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~q 102 (150)
T 4dci_A 30 AEREISNGIANADQQLAQLEQEGQTVVDQVRRQSA-------NPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQ 102 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777754 6666666654432211 12557788778887 88999999999999997777765
Q ss_pred h
Q 037803 107 E 107 (553)
Q Consensus 107 e 107 (553)
=
T Consensus 103 v 103 (150)
T 4dci_A 103 V 103 (150)
T ss_dssp H
T ss_pred H
Confidence 4
No 40
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=33.62 E-value=66 Score=24.86 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037803 79 LLAEVAVLEEEVVRLEEQ 96 (553)
Q Consensus 79 Ll~EIA~lE~eV~~LE~~ 96 (553)
|-.+|+.|+.||..|.+-
T Consensus 42 L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 42 LKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555433
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=33.43 E-value=1.3e+02 Score=26.80 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 75 STKELLAEVAVLEEEVVRLEEQVVH 99 (553)
Q Consensus 75 ~~~eLl~EIA~lE~eV~~LE~~v~~ 99 (553)
...+|-+|+..|+.++.+||..+..
T Consensus 111 e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 111 EIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666655443
No 42
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.62 E-value=88 Score=33.74 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=51.8
Q ss_pred chhhhhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 037803 18 TTASRRASN--AQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEE 95 (553)
Q Consensus 18 ~~~~r~~~~--~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~ 95 (553)
++.+|.... -+.=.+|.++-.+|+.++++=+.-|..+-+.++..... ...+.+|++|+..|-.+|..||.
T Consensus 21 ~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~--------~~~~~~l~~~~~~l~~~i~~le~ 92 (485)
T 3qne_A 21 SQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKA--------KEDAKDLIAEKEKLSNEKKEIIE 92 (485)
T ss_dssp HHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHHHHHHHH
Confidence 445554432 23334455555555555555555555555544321000 01357899999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 037803 96 QVVHFRQDLYREAV 109 (553)
Q Consensus 96 ~v~~l~~~L~qe~~ 109 (553)
++..+..+|.....
T Consensus 93 ~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 93 KEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888876644
No 43
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.01 E-value=90 Score=23.45 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=30.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 72 LPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYR 106 (553)
Q Consensus 72 lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~q 106 (553)
-+..+-.|..|++-|-.+|..|.+++..|+.+|-+
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46688999999999999999999999998888753
No 44
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.36 E-value=67 Score=26.96 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 30 KYALQQDVDKLKKKLRHEENVHRALER 56 (553)
Q Consensus 30 r~~LeqeV~~Lq~~L~~E~~~r~aLe~ 56 (553)
-..|.++...++.++..=...-..|+.
T Consensus 19 l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 19 RNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334445555555555443333333433
No 45
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=31.31 E-value=2.1e+02 Score=26.59 Aligned_cols=56 Identities=9% Similarity=0.083 Sum_probs=29.8
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 037803 24 ASNAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEV 90 (553)
Q Consensus 24 ~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV 90 (553)
...++.+.+-..++..|..++.. .|..|...+.. +.+=+.++++|.+||+.|..++
T Consensus 74 ~ql~~I~~e~r~~~~~Lr~ql~a---kr~EL~aL~~a--------~~~DeakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 74 ATAQKIYDDYYTQTSALRQQLIS---KRYEYNALLTA--------SSPDTAKINAVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTS--------SSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhC--------CCCCHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555443 44555554421 2333567788888877776543
No 46
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=31.00 E-value=67 Score=25.07 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 25 SNAQRKYALQQDVDKLKKKLRHEENVHRALERAF 58 (553)
Q Consensus 25 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al 58 (553)
+.++.-.+|.||..++.+=|.+|+..|+-||+.+
T Consensus 11 alkDev~eLk~e~k~~k~~le~eqraRk~LE~~v 44 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLV 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567899999999999999999999999876
No 47
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=30.85 E-value=37 Score=25.84 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037803 83 VAVLEEEVVRLEEQVVHFRQDL 104 (553)
Q Consensus 83 IA~lE~eV~~LE~~v~~l~~~L 104 (553)
|..||..|..||+.|..|+..|
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777655443
No 48
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=30.79 E-value=1.7e+02 Score=28.34 Aligned_cols=34 Identities=9% Similarity=0.170 Sum_probs=27.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 72 LPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLY 105 (553)
Q Consensus 72 lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~ 105 (553)
=++....|-.||..++.++..||..++.+-.++-
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie 121 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIK 121 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888999999999999999998888665553
No 49
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=30.59 E-value=99 Score=32.90 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037803 28 QRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYRE 107 (553)
Q Consensus 28 ~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe 107 (553)
+.=.+|.++-.+|+.++++=+.-|..+.+.++..... ...+.+|++|+..|-.+|..||+++..+..+|...
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKK--------GEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--------CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666777666521000 02468899999999999999999999988888766
Q ss_pred hh
Q 037803 108 AV 109 (553)
Q Consensus 108 ~~ 109 (553)
..
T Consensus 103 ~~ 104 (455)
T 2dq0_A 103 LW 104 (455)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 50
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=30.58 E-value=47 Score=24.82 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 037803 89 EVVRLEEQVVHFRQDLYREAV 109 (553)
Q Consensus 89 eV~~LE~~v~~l~~~L~qe~~ 109 (553)
++..||++-..||-+||+++.
T Consensus 14 ~l~~LEkqF~~LkEqlY~ERl 34 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLFRERL 34 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455677888899999999976
No 51
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=30.29 E-value=67 Score=22.01 Aligned_cols=22 Identities=14% Similarity=0.293 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 037803 74 PSTKELLAEVAVLEEEVVRLEE 95 (553)
Q Consensus 74 ~~~~eLl~EIA~lE~eV~~LE~ 95 (553)
.++.+||.+=..||.||.+|..
T Consensus 7 dKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 7 XKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 4678999999999999999864
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.01 E-value=1.7e+02 Score=31.20 Aligned_cols=28 Identities=29% Similarity=0.264 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 77 KELLAEVAVLEEEVVRLEEQVVHFRQDL 104 (553)
Q Consensus 77 ~eLl~EIA~lE~eV~~LE~~v~~l~~~L 104 (553)
.++-++...+|.|+..||+++...+.++
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 3344444555555555555555544444
No 53
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=29.51 E-value=1.3e+02 Score=28.56 Aligned_cols=75 Identities=11% Similarity=0.135 Sum_probs=41.7
Q ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 23 RASNAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQ 102 (553)
Q Consensus 23 ~~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~ 102 (553)
+.++++.-.+||.++.++++++.+-..-..-|+.=+..-. ..+-..-.+.-..|..|+.||..|-.....|+.
T Consensus 37 qesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k-------~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~ 109 (189)
T 2v71_A 37 QEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALK-------EKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHK 109 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888876655555544332100 000011123333366666666666666666555
Q ss_pred HH
Q 037803 103 DL 104 (553)
Q Consensus 103 ~L 104 (553)
.+
T Consensus 110 ~i 111 (189)
T 2v71_A 110 YV 111 (189)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 54
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=28.64 E-value=27 Score=22.43 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037803 83 VAVLEEEVVRLEEQVVHFR 101 (553)
Q Consensus 83 IA~lE~eV~~LE~~v~~l~ 101 (553)
|..||-|---|||++..|+
T Consensus 2 idalefendaleqkiaalk 20 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALK 20 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHH
Confidence 3445555555666665533
No 55
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.47 E-value=61 Score=23.29 Aligned_cols=28 Identities=36% Similarity=0.568 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Q 037803 76 TKELLAEVAVLEEE--------------VVRLEEQVVHFRQD 103 (553)
Q Consensus 76 ~~eLl~EIA~lE~e--------------V~~LE~~v~~l~~~ 103 (553)
+..|-.|+|.||.| |++||+.+..||+.
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 35677899999987 45555555555543
No 56
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=28.33 E-value=1.4e+02 Score=31.44 Aligned_cols=76 Identities=9% Similarity=0.220 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037803 32 ALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYRE 107 (553)
Q Consensus 32 ~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe 107 (553)
+||..|.++...=..=+.+=.+|...+....-..+..-..+-++.+..|+|+..+|.-|...+..|..|+..+...
T Consensus 42 ~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~ 117 (411)
T 3ghg_C 42 SLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSN 117 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444444444444444444455555554322222222122445678899999999999999999988887776543
No 57
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=28.10 E-value=80 Score=26.23 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 76 TKELLAEVAVLEEEVVRLEEQVVHFRQDLYR 106 (553)
Q Consensus 76 ~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~q 106 (553)
+.+|-.|=+.|+.+|..|++++..|+.-|.+
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666777776666655554
No 58
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=27.77 E-value=1.8e+02 Score=25.36 Aligned_cols=83 Identities=17% Similarity=0.229 Sum_probs=47.0
Q ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHH-------HHHHHHHH
Q 037803 21 SRRASNAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAV-------LEEEVVRL 93 (553)
Q Consensus 21 ~r~~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~-------lE~eV~~L 93 (553)
..+.-..+....|.++...|+.+|+.|...-.-.+.-+.+-.. .-.-|..+..+|...+.- |..+--+|
T Consensus 34 ~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~----~k~eLe~~l~el~~rleeeee~~~~L~~~kkkl 109 (129)
T 2fxo_A 34 ARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIK----NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKL 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455667889999999999999998774333322211000 001133445555554444 33334456
Q ss_pred HHHHHHHHHHHHhh
Q 037803 94 EEQVVHFRQDLYRE 107 (553)
Q Consensus 94 E~~v~~l~~~L~qe 107 (553)
|+.+.+|+.+|...
T Consensus 110 e~e~~~Lk~~led~ 123 (129)
T 2fxo_A 110 EDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776654
No 59
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=27.46 E-value=88 Score=25.12 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 75 STKELLAEVAVLEEEVVRLEEQVVHFRQDLY 105 (553)
Q Consensus 75 ~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~ 105 (553)
.++.|-.++..|+.|+..|+++...|+.+|-
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888888888888776664
No 60
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=27.35 E-value=1.1e+02 Score=33.17 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037803 28 QRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYRE 107 (553)
Q Consensus 28 ~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe 107 (553)
+.=.+|.++-.+|+.++++=+.-|..+.+.++.....-......-...+.+|++|+..|-++|..||.++..+..+|+..
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555555555555555544200000000000113678999999999999999999999988888876
Q ss_pred hh
Q 037803 108 AV 109 (553)
Q Consensus 108 ~~ 109 (553)
..
T Consensus 150 l~ 151 (501)
T 1wle_A 150 AL 151 (501)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 61
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=26.89 E-value=60 Score=23.59 Aligned_cols=28 Identities=14% Similarity=0.393 Sum_probs=22.2
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 037803 77 KELLAEV----AVLEEEVVRLEEQVVHFRQDL 104 (553)
Q Consensus 77 ~eLl~EI----A~lE~eV~~LE~~v~~l~~~L 104 (553)
-+|+.|+ ..||.-|..||.++.+|...|
T Consensus 8 ydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 8 YDMISDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666 469999999999999977665
No 62
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=26.85 E-value=83 Score=21.70 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 037803 74 PSTKELLAEVAVLEEEVVRLEEQ 96 (553)
Q Consensus 74 ~~~~eLl~EIA~lE~eV~~LE~~ 96 (553)
.++.|||.+=..||.||.+|-.-
T Consensus 8 dkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 8 DAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 46789999999999999998653
No 63
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.68 E-value=67 Score=26.29 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037803 78 ELLAEVAVLEEEVVRLEEQVVHFRQDLYREAVY 110 (553)
Q Consensus 78 eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe~~~ 110 (553)
.+-.|+..||.+|..||.++..|..+|..-.|+
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y 51 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFF 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 455788889999999999999988887655443
No 64
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=26.08 E-value=2.2e+02 Score=29.90 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037803 28 QRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYRE 107 (553)
Q Consensus 28 ~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe 107 (553)
+.=.+|.++-.+|+.++++=+.-|..+.+.++.....- ..+.+|++|+..|-.+|..||+++..+..+|...
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREG--------KDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSC--------SCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777777777777777777888888876421110 1223455555555555555555555544455444
No 65
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=25.94 E-value=88 Score=21.57 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 037803 74 PSTKELLAEVAVLEEEVVRLEE 95 (553)
Q Consensus 74 ~~~~eLl~EIA~lE~eV~~LE~ 95 (553)
.++.+||.|=..||.||.+|..
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHH
Confidence 4678999999999999998864
No 66
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=25.81 E-value=88 Score=21.58 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 037803 74 PSTKELLAEVAVLEEEVVRLEE 95 (553)
Q Consensus 74 ~~~~eLl~EIA~lE~eV~~LE~ 95 (553)
.++.|||.+-..||.||.+|-.
T Consensus 8 dKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 8 DKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 4778999999999999998864
No 67
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.30 E-value=1.6e+02 Score=28.23 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 75 STKELLAEVAVLEEEVVRLEEQVVHFRQDLY 105 (553)
Q Consensus 75 ~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~ 105 (553)
.-+.|-.+|..+++||..|++....|+.-.-
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae 146 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVAE 146 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888899999999999988888765443
No 68
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=25.25 E-value=2.8e+02 Score=22.64 Aligned_cols=49 Identities=27% Similarity=0.357 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 037803 31 YALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQV 97 (553)
Q Consensus 31 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v 97 (553)
.+++.++.+|+..|+.+...|.-|+.-+ ..|+.|...|.......|...
T Consensus 17 ~~~eeel~~lke~l~k~e~~rkele~~~------------------~~l~~ek~~L~~ql~eaEe~~ 65 (89)
T 3bas_A 17 KEQLKQMDKMKEDLAKTERIKKELEEQN------------------VTLLEQKNDLFGSMKQLEDKV 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhHHHHH
Confidence 4689999999999999999999999854 556666665554443334333
No 69
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=25.21 E-value=2.1e+02 Score=25.88 Aligned_cols=32 Identities=9% Similarity=0.130 Sum_probs=28.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 70 PYLPPSTKELLAEVAVLEEEVVRLEEQVVHFR 101 (553)
Q Consensus 70 ~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~ 101 (553)
.+.|.+.+.+-+||+.+..++..|+.||...+
T Consensus 50 rP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ek 81 (141)
T 3okq_A 50 QPAKKKLETVSKDLENAQADVLKLQEFIDTEK 81 (141)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34789999999999999999999999998854
No 70
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=25.15 E-value=53 Score=27.31 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 77 KELLAEVAVLEEEVVRLEEQVVHFRQDLYR 106 (553)
Q Consensus 77 ~eLl~EIA~lE~eV~~LE~~v~~l~~~L~q 106 (553)
..|-++|+.|++++..|++++..++.+|.+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~ 33 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKN 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457788888888888888888887666653
No 71
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.70 E-value=4.3e+02 Score=25.37 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 77 KELLAEVAVLEEEVVRLEEQVVHFRQDLY 105 (553)
Q Consensus 77 ~eLl~EIA~lE~eV~~LE~~v~~l~~~L~ 105 (553)
.++=.+|+-+|.+|..++..+..++.+|.
T Consensus 56 ~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 56 LALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555444443
No 72
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.94 E-value=92 Score=24.13 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 76 TKELLAEVAVLEEEVVRLEEQVVHFRQDLY 105 (553)
Q Consensus 76 ~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~ 105 (553)
+.+|=.+++.|+.|-..|+.+|..|+.+|.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666666666666666666655543
No 73
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=22.62 E-value=94 Score=21.44 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 037803 74 PSTKELLAEVAVLEEEVVRLEE 95 (553)
Q Consensus 74 ~~~~eLl~EIA~lE~eV~~LE~ 95 (553)
.++.+||.+=..||.||.+|..
T Consensus 8 dKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 8 DKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHH
Confidence 4678999999999999999864
No 74
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=22.60 E-value=1.1e+02 Score=26.62 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037803 76 TKELLAEVAVLEEEVVRLEEQVVHFRQDLYRE 107 (553)
Q Consensus 76 ~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe 107 (553)
-.+|++...-.|.||..|..++..|+..|...
T Consensus 6 ~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~ 37 (125)
T 1joc_A 6 RRALLERCLKGEGEIEKLQTKVLELQRKLDNT 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999988654
No 75
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=22.37 E-value=62 Score=21.62 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 037803 84 AVLEEEVVRLEEQVVHFRQDLYR 106 (553)
Q Consensus 84 A~lE~eV~~LE~~v~~l~~~L~q 106 (553)
.-||+||-+|..-|..|+..+.+
T Consensus 2 srlee~~r~l~~ivq~lq~r~dr 24 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDR 24 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888877777777765
No 76
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.16 E-value=3.9e+02 Score=23.18 Aligned_cols=61 Identities=18% Similarity=0.325 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 31 YALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLY 105 (553)
Q Consensus 31 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~ 105 (553)
.+|..-|..|+-+|+.-...+..||+.+...- ...=.++..+...|..||..+..+|.++-
T Consensus 41 ~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e--------------~~~~~~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 41 SELRRTMQNLEIELQSQLSMKASLENSLEETK--------------GRYCMQLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999873100 11122444455555555555555555443
No 77
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=22.14 E-value=42 Score=22.20 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHH
Q 037803 83 VAVLEEEVVRLEEQV 97 (553)
Q Consensus 83 IA~lE~eV~~LE~~v 97 (553)
||.||..|+-|||+-
T Consensus 2 iaaleqkiaaleqkc 16 (32)
T 4g1a_A 2 IAALEQKIAALEQKC 16 (32)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 456666666666543
No 78
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.74 E-value=66 Score=26.17 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 76 TKELLAEVAVLEEEVVRLEEQVVHFRQDL 104 (553)
Q Consensus 76 ~~eLl~EIA~lE~eV~~LE~~v~~l~~~L 104 (553)
+.+|-.|=+.|+.+|..|++++..|+.-|
T Consensus 45 ~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 45 VLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666655433
No 79
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=21.46 E-value=2.8e+02 Score=23.39 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=32.1
Q ss_pred CChhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhh
Q 037803 72 LPPSTKELLAEVAVLE---EEVVRLEEQVVHFRQDLYREAV 109 (553)
Q Consensus 72 lp~~~~eLl~EIA~lE---~eV~~LE~~v~~l~~~L~qe~~ 109 (553)
--..+.+|-++|+..+ +.|.-|..|+.-|+.+|.-|+.
T Consensus 36 KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERa 76 (96)
T 3fx0_A 36 KQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQ 76 (96)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3346788999999999 8999999999999999988854
No 80
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=21.43 E-value=3.5e+02 Score=22.37 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 037803 30 KYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAE----VAVLEEEVVRLEEQVVHFRQDLY 105 (553)
Q Consensus 30 r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~E----IA~lE~eV~~LE~~v~~l~~~L~ 105 (553)
+..||+..+.|++++++|..++.--|+.+ +-..+ .+.+|.|+.....++..|+.+|.
T Consensus 20 q~~le~~r~~ir~eI~KElKiKeGaENL~-------------------katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~ 80 (86)
T 1cxz_B 20 QQQLELERERLRREIRKELKLKEGAENLR-------------------RATTDLGRSLGPVELLLRGSSRRLDLLHQQLQ 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHH-------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35588888999999999988887666543 11222 45788888888888888777764
No 81
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=21.28 E-value=4e+02 Score=23.04 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 31 YALQQDVDKLKKKLRHEENVHRALERAF 58 (553)
Q Consensus 31 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al 58 (553)
..++.++.+|+..|+.+...|.-|+.-.
T Consensus 16 ~~~~eel~~lke~l~k~e~~r~ele~~~ 43 (129)
T 2fxo_A 16 ASMKEEFTRLKEALEKSEARRKELEEKM 43 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888889999988888888887654
No 82
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.26 E-value=1.5e+02 Score=24.39 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 76 TKELLAEVAVLEEEVVRLEEQVVHFRQ 102 (553)
Q Consensus 76 ~~eLl~EIA~lE~eV~~LE~~v~~l~~ 102 (553)
-..|-.+|..+++||..|.+....|+-
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888888888888777554
No 83
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.12 E-value=1.7e+02 Score=22.49 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 75 STKELLAEVAVLEEEVVRLEEQVVHFRQDL 104 (553)
Q Consensus 75 ~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L 104 (553)
.+++|=.|.+.|+.+|..|+.++..|+.-|
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777765433
No 84
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=20.86 E-value=1.2e+02 Score=25.85 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=29.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 72 LPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYR 106 (553)
Q Consensus 72 lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~q 106 (553)
+..+...|=+||+.|+.+=..|.+++..++.+|..
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~ 38 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRL 38 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999999999999999998877754
No 85
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=20.25 E-value=45 Score=25.60 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037803 81 AEVAVLEEEVVRLEEQVVHFRQD 103 (553)
Q Consensus 81 ~EIA~lE~eV~~LE~~v~~l~~~ 103 (553)
..|+.||.+|..||..|..|+.+
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~~~ 71 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLTSD 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Done!