Query 037803
Match_columns 553
No_of_seqs 249 out of 561
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 07:08:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037803.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037803hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 64.4 19 0.0014 28.5 9.4 71 29-109 29-99 (110)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 41.8 35 0.0025 26.8 7.2 76 32-107 19-98 (107)
3 d1ivsa1 a.2.7.3 (A:797-862) Va 40.2 56 0.0041 23.3 7.7 62 33-99 2-64 (66)
4 d2azeb1 e.63.1.2 (B:201-301) T 19.1 77 0.0056 24.9 5.3 32 75-106 2-33 (101)
5 d1nlwa_ a.38.1.1 (A:) Mad prot 18.9 76 0.0055 23.2 5.0 29 76-104 49-77 (79)
6 d1cxzb_ a.2.6.1 (B:) Protein k 18.2 1.3E+02 0.0097 23.0 6.3 66 25-105 15-80 (86)
7 d1nkpa_ a.38.1.1 (A:) Myc prot 15.5 1.1E+02 0.0082 22.7 5.4 27 78-104 56-82 (88)
8 d1v74b_ a.24.20.1 (B:) Colicin 14.3 43 0.0031 25.9 2.4 18 242-259 37-54 (87)
9 d2bz1a1 c.144.1.1 (A:1-174) GT 12.8 48 0.0035 28.4 2.6 45 436-480 26-84 (174)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 12.4 2.7E+02 0.02 21.6 7.3 28 31-58 18-45 (133)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=64.38 E-value=19 Score=28.54 Aligned_cols=71 Identities=25% Similarity=0.339 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037803 29 RKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDLYREA 108 (553)
Q Consensus 29 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~qe~ 108 (553)
.=.+|.++...|+.++++=+.-|..+.+.++.. -+..+.+|++|+..|-.+|..||+++..+..+++.-.
T Consensus 29 ~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~----------~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~l 98 (110)
T d1seta1 29 ALLALDREVQELKKRLQEVQTERNQVAKRVPKA----------PPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677777777777777667777788777531 2346789999999999999999999999888887664
Q ss_pred h
Q 037803 109 V 109 (553)
Q Consensus 109 ~ 109 (553)
.
T Consensus 99 l 99 (110)
T d1seta1 99 L 99 (110)
T ss_dssp T
T ss_pred H
Confidence 3
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=41.77 E-value=35 Score=26.81 Aligned_cols=76 Identities=13% Similarity=0.095 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037803 32 ALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELL----AEVAVLEEEVVRLEEQVVHFRQDLYRE 107 (553)
Q Consensus 32 ~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl----~EIA~lE~eV~~LE~~v~~l~~~L~qe 107 (553)
.+.+.+.+|+.++++=..+-..|+..=....+.-.-.|..++....+++ +.+..++.+|..||+++..+...+..-
T Consensus 19 ~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~ 98 (107)
T d1fxka_ 19 AISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777665555555554322111111123344555555544 457789999999999999988877643
No 3
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=40.19 E-value=56 Score=23.29 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHH-HHHHHHHHHHHHHHHHHHHHHH
Q 037803 33 LQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTK-ELLAEVAVLEEEVVRLEEQVVH 99 (553)
Q Consensus 33 LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~-eLl~EIA~lE~eV~~LE~~v~~ 99 (553)
+++|+.+|+++|..=..--..+++-|+.+... ..-|+.+. +--.-++.++.++..|++.+..
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~-----~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l~~ 64 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRKLASPGFR-----EKAPKEVVEAEEARLKENLEQAERIREALSQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTHH-----HHSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCChHHH-----HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999988777777888888654331 11343332 2334456677777777777655
No 4
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.05 E-value=77 Score=24.89 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 75 STKELLAEVAVLEEEVVRLEEQVVHFRQDLYR 106 (553)
Q Consensus 75 ~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L~q 106 (553)
+.+.|=+||+-|+.+-..|.+.+..+..+|..
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~ 33 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRL 33 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999998887754
No 5
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.92 E-value=76 Score=23.22 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 76 TKELLAEVAVLEEEVVRLEEQVVHFRQDL 104 (553)
Q Consensus 76 ~~eLl~EIA~lE~eV~~LE~~v~~l~~~L 104 (553)
++.|-.++..++.++..|..+...|+.+|
T Consensus 49 I~~L~~~~~~l~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566677777777777776666655
No 6
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.22 E-value=1.3e+02 Score=22.96 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=46.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 25 SNAQRKYALQQDVDKLKKKLRHEENVHRALERAFSRPLGALPRLPPYLPPSTKELLAEVAVLEEEVVRLEEQVVHFRQDL 104 (553)
Q Consensus 25 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~~eLl~EIA~lE~eV~~LE~~v~~l~~~L 104 (553)
.-...+..||..-+.|.+++++|..++.--|+.+.- |..-=+-.+.+|.|+..--.++..|+.+|
T Consensus 15 ~~~~~q~~le~~r~~lr~eI~KELKIKeGAENL~~a---------------ttd~kk~~~~V~~eL~~sN~kL~~L~~eL 79 (86)
T d1cxzb_ 15 AAPGVQQQLELERERLRREIRKELKLKEGAENLRRA---------------TTDLGRSLGPVELLLRGSSRRLDLLHQQL 79 (86)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHH---------------HccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456779999999999999999998877765520 11111112458888888888888877777
Q ss_pred H
Q 037803 105 Y 105 (553)
Q Consensus 105 ~ 105 (553)
-
T Consensus 80 ~ 80 (86)
T d1cxzb_ 80 Q 80 (86)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.50 E-value=1.1e+02 Score=22.67 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037803 78 ELLAEVAVLEEEVVRLEEQVVHFRQDL 104 (553)
Q Consensus 78 eLl~EIA~lE~eV~~LE~~v~~l~~~L 104 (553)
.|-.++..|+.++..|.++...|+.+|
T Consensus 56 ~L~~~~~~l~~~~~~l~~~~~~L~~~l 82 (88)
T d1nkpa_ 56 SVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 8
>d1v74b_ a.24.20.1 (B:) Colicin D immunity protein {Escherichia coli [TaxId: 562]}
Probab=14.34 E-value=43 Score=25.92 Aligned_cols=18 Identities=17% Similarity=0.477 Sum_probs=15.4
Q ss_pred CCcccHHHHHHHHHHHHH
Q 037803 242 PNRISEDIVRCLSTILLR 259 (553)
Q Consensus 242 Pn~lSE~mvrC~~~Iy~~ 259 (553)
-++++.++-.|++.|||-
T Consensus 37 ~~~~~~~l~eClssiF~~ 54 (87)
T d1v74b_ 37 VKDLSPNILNCGEELFMA 54 (87)
T ss_dssp CSSCCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHH
Confidence 457788899999999995
No 9
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]}
Probab=12.75 E-value=48 Score=28.37 Aligned_cols=45 Identities=27% Similarity=0.278 Sum_probs=29.1
Q ss_pred CCCCeeeeeeccCCCC--CCC-CcccChhhH-----------HHHHHHHHHHHHhhccC
Q 037803 436 LSEPLVTFALSCGSWS--SPA-VRVYTASEV-----------ESELEVAKREYLQAAVG 480 (553)
Q Consensus 436 ~~ePrIhFAL~cGs~S--sP~-lrvYta~~l-----------~~qLe~a~~efl~~~v~ 480 (553)
..|..+||||+.|.++ .|+ |||-....+ ..+|+.|.+..-....|
T Consensus 26 ~~~~~~HlALvkG~i~~~~~vlVRVHs~~~~~Dv~~~~~~~~~~~L~~al~~I~~~g~G 84 (174)
T d2bz1a1 26 LATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCDCGFQLEAALTQIAEEGRG 84 (174)
T ss_dssp TTTCCEEEEEEESCCCSSSCEEEEEEECCHHHHTSCCSSCSHHHHHHHHHHHHHHHTSE
T ss_pred CCCCeEEEEEEEcCcccccceeEEeeecccccceecccccccchhHHHHHHHHHHcCCc
Confidence 4577899999999765 344 586543332 35777777666555544
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.44 E-value=2.7e+02 Score=21.62 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037803 31 YALQQDVDKLKKKLRHEENVHRALERAF 58 (553)
Q Consensus 31 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al 58 (553)
..|++.+.+|+..+.+=.....+|+..-
T Consensus 18 ~~l~~~i~~l~~~~~e~~~~~~~L~~l~ 45 (133)
T d1fxkc_ 18 ELIQQQMEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555555666666543
Done!