Query 037804
Match_columns 609
No_of_seqs 303 out of 659
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 04:34:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2381 Phosphatidylinositol 4 100.0 4.5E-71 9.7E-76 564.5 10.9 283 137-437 2-285 (286)
2 TIGR03843 conserved hypothetic 100.0 8.2E-44 1.8E-48 355.5 15.8 194 150-395 10-235 (253)
3 cd01802 AN1_N ubiquitin-like d 99.6 8.5E-16 1.8E-20 137.1 9.1 75 18-92 20-98 (103)
4 cd01807 GDX_N ubiquitin-like d 99.6 8.8E-16 1.9E-20 127.7 8.4 67 26-92 1-71 (74)
5 KOG0005 Ubiquitin-like protein 99.6 3.5E-16 7.7E-21 127.2 4.6 66 26-91 1-70 (70)
6 cd01793 Fubi Fubi ubiquitin-li 99.6 2.7E-15 5.8E-20 125.0 8.0 64 26-91 1-68 (74)
7 cd01797 NIRF_N amino-terminal 99.6 3.8E-15 8.3E-20 126.4 8.1 67 26-92 1-73 (78)
8 cd01798 parkin_N amino-termina 99.6 3.7E-15 8E-20 122.6 7.7 65 28-92 1-69 (70)
9 PTZ00044 ubiquitin; Provisiona 99.6 5.9E-15 1.3E-19 122.4 8.4 67 26-92 1-71 (76)
10 cd01810 ISG15_repeat2 ISG15 ub 99.5 1.5E-14 3.2E-19 120.5 7.7 65 28-92 1-69 (74)
11 KOG0003 Ubiquitin/60s ribosoma 99.5 1.4E-15 3.1E-20 136.3 0.9 66 26-91 1-70 (128)
12 KOG0004 Ubiquitin/40S ribosoma 99.5 3.3E-15 7.3E-20 141.3 3.2 66 26-91 1-70 (156)
13 cd01791 Ubl5 UBL5 ubiquitin-li 99.5 2.7E-14 5.9E-19 120.1 8.2 66 26-91 2-71 (73)
14 cd01794 DC_UbP_C dendritic cel 99.5 3.6E-14 7.8E-19 118.2 7.4 63 29-91 2-68 (70)
15 cd01806 Nedd8 Nebb8-like ubiq 99.5 9.6E-14 2.1E-18 114.2 9.0 67 26-92 1-71 (76)
16 cd01809 Scythe_N Ubiquitin-lik 99.5 1E-13 2.3E-18 112.9 8.7 67 26-92 1-71 (72)
17 cd01805 RAD23_N Ubiquitin-like 99.5 1.2E-13 2.6E-18 114.7 9.0 67 26-92 1-73 (77)
18 cd01803 Ubiquitin Ubiquitin. U 99.5 1E-13 2.2E-18 114.1 8.3 67 26-92 1-71 (76)
19 cd01804 midnolin_N Ubiquitin-l 99.5 1.7E-13 3.7E-18 115.9 8.3 67 25-92 1-71 (78)
20 cd01796 DDI1_N DNA damage indu 99.4 1.8E-13 4E-18 113.7 7.4 64 28-91 1-70 (71)
21 cd01808 hPLIC_N Ubiquitin-like 99.4 3.7E-13 8E-18 111.2 8.0 66 26-92 1-70 (71)
22 cd01792 ISG15_repeat1 ISG15 ub 99.4 4E-13 8.6E-18 113.8 7.4 67 26-92 3-75 (80)
23 cd01790 Herp_N Homocysteine-re 99.4 1.2E-12 2.5E-17 112.4 7.7 67 26-92 2-78 (79)
24 PF00240 ubiquitin: Ubiquitin 99.3 6.8E-12 1.5E-16 102.0 7.7 62 31-92 1-66 (69)
25 cd01812 BAG1_N Ubiquitin-like 99.3 1E-11 2.2E-16 101.3 7.6 65 26-91 1-69 (71)
26 cd01763 Sumo Small ubiquitin-r 99.3 2E-11 4.3E-16 105.4 9.3 70 22-91 8-81 (87)
27 cd01800 SF3a120_C Ubiquitin-li 99.2 4.1E-11 8.9E-16 100.6 7.0 60 33-92 5-68 (76)
28 TIGR00601 rad23 UV excision re 99.1 1.8E-10 3.9E-15 123.6 9.9 67 26-92 1-74 (378)
29 smart00213 UBQ Ubiquitin homol 99.1 3.9E-10 8.5E-15 89.0 7.4 60 26-86 1-64 (64)
30 cd01815 BMSC_UbP_N Ubiquitin-l 99.1 1.7E-10 3.7E-15 98.4 4.9 49 44-92 19-74 (75)
31 cd01813 UBP_N UBP ubiquitin pr 99.0 6.8E-10 1.5E-14 93.6 7.6 65 26-91 1-72 (74)
32 cd01799 Hoil1_N Ubiquitin-like 99.0 5E-10 1.1E-14 94.8 6.5 62 28-90 5-72 (75)
33 KOG0010 Ubiquitin-like protein 99.0 6.7E-10 1.4E-14 121.2 7.7 78 24-102 14-95 (493)
34 PF00454 PI3_PI4_kinase: Phosp 98.9 1E-10 2.2E-15 115.5 -2.4 102 255-376 95-205 (235)
35 cd01769 UBL Ubiquitin-like dom 98.8 1.9E-08 4.1E-13 80.3 7.5 62 30-91 2-67 (69)
36 KOG0001 Ubiquitin and ubiquiti 98.8 2.9E-08 6.2E-13 78.1 8.4 66 27-92 1-70 (75)
37 PF11976 Rad60-SLD: Ubiquitin- 98.7 7.4E-08 1.6E-12 79.2 8.7 66 26-91 1-71 (72)
38 cd01814 NTGP5 Ubiquitin-like N 98.7 2.7E-08 5.8E-13 90.8 6.1 67 25-91 4-88 (113)
39 KOG0011 Nucleotide excision re 98.5 3E-07 6.5E-12 96.7 7.6 65 26-90 1-71 (340)
40 cd01795 USP48_C USP ubiquitin- 98.5 3.6E-07 7.9E-12 82.0 6.5 56 36-91 15-75 (107)
41 cd01789 Alp11_N Ubiquitin-like 98.2 6.9E-06 1.5E-10 70.9 8.8 66 27-92 3-80 (84)
42 PLN02560 enoyl-CoA reductase 98.2 3E-06 6.5E-11 89.3 7.9 66 26-91 1-81 (308)
43 KOG4248 Ubiquitin-like protein 98.2 1.7E-06 3.8E-11 101.1 6.2 65 27-92 4-72 (1143)
44 cd00196 UBQ Ubiquitin-like pro 97.7 0.00018 3.9E-09 52.9 7.5 61 31-91 3-67 (69)
45 PF14560 Ubiquitin_2: Ubiquiti 97.5 0.00053 1.2E-08 59.0 8.2 67 26-92 2-82 (87)
46 KOG3829 Uncharacterized conser 97.4 0.00069 1.5E-08 73.7 9.8 173 134-332 151-389 (486)
47 cd01801 Tsc13_N Ubiquitin-like 97.2 0.00083 1.8E-08 56.8 6.5 64 27-90 2-74 (77)
48 PF13881 Rad60-SLD_2: Ubiquiti 97.2 0.0021 4.5E-08 58.9 8.6 66 26-91 3-86 (111)
49 cd01788 ElonginB Ubiquitin-lik 97.1 0.0016 3.4E-08 60.2 7.5 55 37-91 13-78 (119)
50 PF11543 UN_NPL4: Nuclear pore 96.6 0.0034 7.3E-08 54.3 5.3 66 24-90 3-77 (80)
51 KOG0006 E3 ubiquitin-protein l 96.6 0.0034 7.3E-08 66.6 6.0 66 27-92 2-74 (446)
52 cd01811 OASL_repeat1 2'-5' oli 96.0 0.024 5.2E-07 49.1 7.0 65 26-91 1-74 (80)
53 PF07804 HipA_C: HipA-like C-t 95.1 0.009 2E-07 50.6 1.0 38 282-324 40-77 (79)
54 KOG1872 Ubiquitin-specific pro 94.4 0.069 1.5E-06 59.4 6.1 65 27-92 5-74 (473)
55 PF06702 DUF1193: Protein of u 93.9 0.044 9.5E-07 55.9 3.1 85 282-374 89-176 (221)
56 cd05168 PI4Kc_III_beta Phospho 92.9 0.16 3.4E-06 53.8 5.4 39 286-332 134-172 (293)
57 PF13019 Telomere_Sde2: Telome 92.0 0.31 6.6E-06 47.8 5.7 51 26-76 1-57 (162)
58 PF10302 DUF2407: DUF2407 ubiq 92.0 0.35 7.5E-06 43.5 5.6 53 27-79 2-59 (97)
59 cd00893 PI4Kc_III Phosphoinosi 91.8 0.39 8.5E-06 50.8 6.7 66 286-363 132-197 (289)
60 KOG1769 Ubiquitin-like protein 91.2 1.4 3E-05 40.2 8.5 70 23-92 18-91 (99)
61 cd00895 PI3Kc_C2_beta Phosphoi 90.6 0.23 5E-06 54.0 3.7 64 286-360 196-259 (354)
62 PF11470 TUG-UBL1: GLUT4 regul 90.4 1.2 2.7E-05 37.4 7.0 59 32-90 3-65 (65)
63 cd05167 PI4Kc_III_alpha Phosph 90.4 0.51 1.1E-05 50.5 6.0 65 287-363 154-218 (311)
64 cd05166 PI3Kc_II Phosphoinosit 90.3 0.5 1.1E-05 51.3 5.9 39 286-332 195-233 (353)
65 KOG4495 RNA polymerase II tran 90.1 0.7 1.5E-05 42.1 5.6 55 36-90 12-79 (110)
66 cd05165 PI3Kc_I Phosphoinositi 89.7 0.47 1E-05 51.8 5.1 39 286-332 205-243 (366)
67 cd05174 PI3Kc_IA_delta Phospho 88.8 0.21 4.6E-06 54.4 1.7 38 287-332 202-239 (361)
68 KOG4583 Membrane-associated ER 88.4 0.1 2.2E-06 56.1 -1.0 74 26-101 10-93 (391)
69 cd05173 PI3Kc_IA_beta Phosphoi 88.0 0.25 5.5E-06 53.8 1.7 39 286-332 201-239 (362)
70 cd00896 PI3Kc_III Phosphoinosi 87.7 0.27 5.9E-06 53.2 1.6 41 284-332 193-233 (350)
71 cd00891 PI3Kc Phosphoinositide 87.6 0.64 1.4E-05 50.4 4.4 65 285-363 195-262 (352)
72 cd05177 PI3Kc_C2_gamma Phospho 87.3 0.49 1.1E-05 51.5 3.3 62 285-357 195-256 (354)
73 KOG0013 Uncharacterized conser 82.4 2 4.3E-05 44.0 4.8 69 22-90 140-215 (231)
74 PF09192 Act-Frag_cataly: Acti 82.3 0.56 1.2E-05 49.5 0.9 144 151-330 32-209 (275)
75 cd00894 PI3Kc_IB_gamma Phospho 80.7 0.74 1.6E-05 50.3 1.2 38 287-332 206-243 (365)
76 cd05176 PI3Kc_C2_alpha Phospho 79.6 1.9 4E-05 47.1 3.8 40 285-332 194-233 (353)
77 KOG0903 Phosphatidylinositol 4 79.6 3.1 6.8E-05 49.2 5.8 93 287-392 689-784 (847)
78 cd05175 PI3Kc_IA_alpha Phospho 79.4 0.78 1.7E-05 50.2 0.9 39 286-332 204-242 (366)
79 PF00789 UBX: UBX domain; Int 75.6 23 0.0005 29.8 8.6 67 24-90 5-80 (82)
80 cd06409 PB1_MUG70 The MUG70 pr 74.8 8.9 0.00019 34.1 6.0 37 28-64 3-39 (86)
81 KOG3493 Ubiquitin-like protein 74.8 1.6 3.6E-05 37.2 1.4 54 27-80 3-56 (73)
82 PTZ00303 phosphatidylinositol 74.7 1.4 3E-05 52.2 1.2 40 285-332 1137-1176(1374)
83 smart00146 PI3Kc Phosphoinosit 73.0 1.8 3.8E-05 43.0 1.3 41 284-332 92-132 (202)
84 cd05169 PIKKc_TOR TOR (Target 72.4 2.1 4.5E-05 44.6 1.7 81 284-387 172-254 (280)
85 PF08817 YukD: WXG100 protein 70.9 11 0.00024 31.9 5.6 65 26-90 3-78 (79)
86 KOG0906 Phosphatidylinositol 3 70.0 3.9 8.5E-05 47.9 3.4 60 286-361 687-746 (843)
87 cd05124 AFK Actin-Fragmin Kina 69.5 6.1 0.00013 41.1 4.3 28 283-310 122-159 (238)
88 COG0661 AarF Predicted unusual 67.7 13 0.00028 42.6 6.9 93 293-406 284-376 (517)
89 smart00166 UBX Domain present 63.7 46 0.001 28.2 7.9 54 24-77 3-58 (80)
90 cd05172 PIKKc_DNA-PK DNA-depen 63.2 5.2 0.00011 41.0 2.4 42 284-332 127-168 (235)
91 KOG0892 Protein kinase ATM/Tel 63.2 3.1 6.7E-05 54.9 0.9 40 285-331 2617-2656(2806)
92 cd05171 PIKKc_ATM Ataxia telan 63.1 4 8.6E-05 42.7 1.6 42 284-332 172-213 (279)
93 KOG0904 Phosphatidylinositol 3 62.6 5.7 0.00012 47.9 2.9 36 289-332 919-954 (1076)
94 KOG0902 Phosphatidylinositol 4 62.1 3.3 7.3E-05 52.0 1.0 41 284-332 1643-1683(1803)
95 cd00892 PIKKc_ATR ATR (Ataxia 61.9 4 8.8E-05 41.8 1.4 41 285-332 131-171 (237)
96 PRK09775 putative DNA-binding 61.5 4.9 0.00011 45.0 2.1 41 282-326 327-368 (442)
97 KOG1235 Predicted unusual prot 61.5 5.7 0.00012 45.7 2.6 39 290-332 317-355 (538)
98 PF09379 FERM_N: FERM N-termin 60.8 15 0.00032 30.5 4.4 40 30-70 1-42 (80)
99 cd06406 PB1_P67 A PB1 domain i 59.3 34 0.00073 30.3 6.3 36 37-72 12-47 (80)
100 cd00142 PI3Kc_like Phosphoinos 58.2 4.9 0.00011 40.4 1.2 66 284-362 119-185 (219)
101 smart00295 B41 Band 4.1 homolo 56.8 29 0.00062 33.1 6.2 38 25-62 3-40 (207)
102 smart00666 PB1 PB1 domain. Pho 55.2 47 0.001 27.7 6.5 44 28-72 4-47 (81)
103 KOG3206 Alpha-tubulin folding 53.7 45 0.00098 34.5 7.1 69 39-107 16-95 (234)
104 cd05164 PIKKc Phosphoinositide 53.5 6.4 0.00014 39.9 1.2 42 284-332 122-163 (222)
105 KOG0905 Phosphoinositide 3-kin 53.2 10 0.00022 47.2 2.9 37 288-332 1191-1227(1639)
106 PF15044 CLU_N: Mitochondrial 52.6 18 0.0004 31.1 3.6 51 42-92 1-57 (76)
107 cd05170 PIKKc_SMG1 Suppressor 51.2 7.8 0.00017 41.2 1.5 63 284-360 200-264 (307)
108 cd01787 GRB7_RA RA (RAS-associ 49.7 95 0.0021 27.8 7.7 38 27-64 4-41 (85)
109 PF14453 ThiS-like: ThiS-like 49.6 58 0.0012 27.1 5.9 55 26-92 1-55 (57)
110 cd01772 SAKS1_UBX SAKS1-like U 48.1 1.3E+02 0.0027 25.8 8.1 64 26-90 5-77 (79)
111 KOG4250 TANK binding protein k 47.5 22 0.00047 42.3 4.3 42 32-73 321-362 (732)
112 cd00754 MoaD Ubiquitin domain 47.1 73 0.0016 26.3 6.4 54 37-91 17-74 (80)
113 cd01767 UBX UBX (ubiquitin reg 46.7 1.1E+02 0.0025 25.5 7.5 51 26-77 3-55 (77)
114 smart00455 RBD Raf-like Ras-bi 44.6 67 0.0014 27.2 5.8 49 29-77 3-53 (70)
115 COG5227 SMT3 Ubiquitin-like pr 43.7 81 0.0018 28.8 6.3 83 9-92 5-95 (103)
116 PRK08364 sulfur carrier protei 43.4 1.4E+02 0.0029 25.0 7.4 54 34-92 10-65 (70)
117 cd05992 PB1 The PB1 domain is 40.2 68 0.0015 26.5 5.2 39 34-72 8-47 (81)
118 cd01773 Faf1_like1_UBX Faf1 ik 39.2 1.1E+02 0.0024 27.1 6.4 49 26-75 6-56 (82)
119 PF14533 USP7_C2: Ubiquitin-sp 38.9 28 0.00061 35.1 3.1 31 34-64 131-161 (213)
120 cd06407 PB1_NLP A PB1 domain i 38.4 81 0.0017 27.6 5.5 34 29-62 2-36 (82)
121 PRK06437 hypothetical protein; 38.2 1.8E+02 0.0038 24.3 7.3 58 28-92 5-62 (67)
122 smart00144 PI3K_rbd PI3-kinase 37.5 1.5E+02 0.0032 27.0 7.3 66 26-91 18-102 (108)
123 cd01774 Faf1_like2_UBX Faf1 ik 35.4 2.9E+02 0.0063 24.2 8.5 52 24-76 3-56 (85)
124 PHA02537 M terminase endonucle 34.2 19 0.0004 37.4 1.0 44 320-363 106-158 (230)
125 cd05163 TRRAP TRansformation/t 32.8 22 0.00049 36.8 1.4 42 284-332 145-186 (253)
126 cd01777 SNX27_RA Ubiquitin dom 32.0 81 0.0018 28.4 4.5 41 28-68 4-44 (87)
127 PF00794 PI3K_rbd: PI3-kinase 31.5 72 0.0016 28.4 4.2 66 26-91 17-100 (106)
128 cd01760 RBD Ubiquitin-like dom 31.4 1.1E+02 0.0024 26.2 5.1 44 28-71 2-45 (72)
129 cd01770 p47_UBX p47-like ubiqu 31.1 1.3E+02 0.0027 26.0 5.5 53 26-78 5-60 (79)
130 PF02824 TGS: TGS domain; Int 30.6 1.2E+02 0.0026 24.6 5.0 56 28-91 1-59 (60)
131 KOG1639 Steroid reductase requ 30.5 1E+02 0.0022 32.9 5.5 64 27-90 2-76 (297)
132 COG4106 Tam Trans-aconitate me 30.0 38 0.00083 35.5 2.4 28 564-591 211-238 (257)
133 cd06396 PB1_NBR1 The PB1 domai 29.3 1.3E+02 0.0029 26.6 5.3 46 28-79 1-49 (81)
134 KOG0608 Warts/lats-like serine 28.6 47 0.001 39.7 3.1 45 282-339 742-788 (1034)
135 PLN02799 Molybdopterin synthas 28.6 1.7E+02 0.0038 24.6 5.9 65 26-91 2-76 (82)
136 PF14836 Ubiquitin_3: Ubiquiti 27.0 99 0.0022 27.8 4.2 57 36-93 14-81 (88)
137 PF11620 GABP-alpha: GA-bindin 25.7 1.4E+02 0.0031 27.0 4.9 54 37-90 4-61 (88)
138 PF00564 PB1: PB1 domain; Int 25.3 2E+02 0.0043 23.9 5.6 44 29-72 3-48 (84)
139 cd01768 RA RA (Ras-associating 24.9 3.2E+02 0.0069 23.0 6.9 28 35-62 12-39 (87)
140 PF10446 DUF2457: Protein of u 24.8 3E+02 0.0065 31.5 8.3 21 549-570 183-203 (458)
141 PF15463 ECM11: Extracellular 23.8 77 0.0017 30.1 3.1 28 564-591 66-97 (139)
142 PRK12540 RNA polymerase sigma 23.3 2.5E+02 0.0054 27.1 6.6 55 370-438 104-158 (182)
143 PRK04171 ribosome biogenesis p 23.2 1.3E+02 0.0028 31.3 4.8 48 22-69 78-130 (222)
144 cd06410 PB1_UP2 Uncharacterize 22.9 3.1E+02 0.0066 24.9 6.6 46 21-70 11-56 (97)
145 TIGR01682 moaD molybdopterin c 22.3 4.3E+02 0.0093 22.2 7.1 57 34-91 13-74 (80)
146 COG5032 TEL1 Phosphatidylinosi 21.9 46 0.001 44.3 1.6 83 283-387 1932-2015(2105)
147 cd06411 PB1_p51 The PB1 domain 21.9 1.7E+02 0.0037 25.9 4.6 36 36-71 7-42 (78)
148 PF14847 Ras_bdg_2: Ras-bindin 21.8 1.4E+02 0.0031 27.5 4.3 37 27-63 2-38 (105)
149 cd06408 PB1_NoxR The PB1 domai 21.2 2.3E+02 0.0051 25.4 5.4 60 27-90 2-62 (86)
150 PRK04750 ubiB putative ubiquin 21.1 54 0.0012 37.9 1.8 38 290-331 276-313 (537)
151 PF09278 MerR-DNA-bind: MerR, 20.2 1.2E+02 0.0027 24.2 3.2 21 391-411 5-25 (65)
No 1
>KOG2381 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-71 Score=564.53 Aligned_cols=283 Identities=46% Similarity=0.735 Sum_probs=260.3
Q ss_pred HHHHHHHHCCCCCccccCCcceEEEEEeCCCCEEEEEecCCCCCCCCCCCCCcCCcccCCCCCCCccccCcchhh-hhhh
Q 037804 137 KEIVEGIKNGVEPIPIHGGLGGAYYFKNSKGEHVAIVKPTDEEPFAPNNPKGFAGKALGQPGLKRSVRVGETGFR-EVAA 215 (609)
Q Consensus 137 ~~v~~ai~~G~~P~~i~~GsgGsYf~~~~~G~~vaVFKP~DEEP~a~nNPk~~~~r~~g~~gf~rg~lvGe~a~R-EvAA 215 (609)
+++..|++.|+.|.++..|++|+|||++..|..+|||||+||||||+|||||......|+||+++||++||+++| |+||
T Consensus 2 ~~~~~a~~~g~~p~~~~~g~~gayf~~~~~~~~~~v~kP~deEp~~~~Npk~~~~~~~g~~~~~~~~~v~~~g~~~E~aa 81 (286)
T KOG2381|consen 2 REAIEAIEKGIFPELLPLGSGGAYFMQDTSGWIVGVFKPKDEEPYARNNPKGTKVLQRGQCGCKRSCLVGNSGYRSEAAA 81 (286)
T ss_pred chHHHHhhcCCCcccccCCCchhHHHhccccceeeccCCCcccccccCCCccCchhhccccccccceeccCccccchhhh
Confidence 578899999999999999999999999999999999999999999999999977777788899999999999997 9999
Q ss_pred hhhccCCCCCCCCeeEEEeeccccccCcccccccccCCCCCCccceeeeccCCCCCCCCCCCCCCChhhHhhhcccceEe
Q 037804 216 YLLDYDHFAKVPPTVLVKVRHSIFNLNDGMIGNKLQNGKKVSKIASLQQFVPHDFDASDHGTSSFPVAAIHRIGILDIRI 295 (609)
Q Consensus 216 YLLD~~gf~~VP~T~lV~~~hp~F~~~~~~~g~~~~~~~~~~KiGSlQ~FV~~~~~a~d~g~~~F~v~evhkIaILDiri 295 (609)
|||||++|+.||+|.+|+++|+.|||++....+... ...|+||+|+||++ +++.|+++..|++.++|||+||||||
T Consensus 82 yLlD~~~~~~Vp~t~~v~i~~~~f~~~~~~~~~~~~---~~~k~gs~q~Fve~-~~~~d~~~~~F~~~e~hkivvlD~ri 157 (286)
T KOG2381|consen 82 YLLDHPEFNDVPRTALVKITHFTFNYNAAFLSKRQG---KKSKIGSLQLFVEG-YSAADYGLRRFEAEEVHKIVVLDIRI 157 (286)
T ss_pred hccCccccCCCCceeeEEEeeecccccccceecccc---cccchhhHHHhhcC-ccccceeEEeccccccceeEEEEEEe
Confidence 999999999999999999999999999876542211 12799999999999 99999999999999999999999999
Q ss_pred ecCCCCCCceEEEecCCCCCCcceEEEeecccccCcccCCCCCcccccCCCCCCCCCHHHHHHHHcCChhhhHHHHHhcC
Q 037804 296 FNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPESLEDPYFEWMHWPQASIPFSEDELEYIRNLNPAHDSEMLRTEL 375 (609)
Q Consensus 296 ~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~~~~d~~f~Wl~WPqA~~PFS~e~l~yI~~LD~~~D~~~Lr~~l 375 (609)
+|||||+|||||++.+..+ .-...+|||||||++|+|+||+|++||||..|||+++++|| ||+..|+++||
T Consensus 158 ~NtDRh~~N~lvk~~~~~~----~~~~~~Dhgl~fP~~~~d~~f~W~~~pqa~~pfs~~~~~yi--L~~~~d~~~~r--- 228 (286)
T KOG2381|consen 158 RNTDRHAGNWLVKKEPTLE----QAAILGDHGLCFPEKHPDEWFEWLYWPQAKIPFSEEIVDYI--LDPLTDCNLLR--- 228 (286)
T ss_pred eccCCCCCceeEEeccCcc----cccccccCceeCcccCCccccchHHHHhhcccccHHHHhcc--CCcccCHHHHH---
Confidence 9999999999999965222 22455699999999999999999999999999999999999 99999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHCCCCHHHHHHhhhhccccCCCCCChHHHHHHHHHHHHHH
Q 037804 376 PMIREACLRVLILSTVFLQEAAAFGLCLAEIGEMMTREFRSEDEKPSELEIVCLEARRIIAE 437 (609)
Q Consensus 376 ~~ire~clr~l~i~t~lLK~~a~~gLtl~eIg~~m~R~~~~~~~~pS~lE~~~~~a~~~~~~ 437 (609)
++.+.|+|+++++|+|+|+++++|||+.+||.+|+|++..+ |.+|.+|.+|.+.+.+
T Consensus 229 -~l~~~~~~~~~~~~~f~k~~~~~~l~~~~~g~~~~re~~~~----~~~~~~~~~~~~~~~~ 285 (286)
T KOG2381|consen 229 -ELPEDLLRLFKVDTGFLKKAFEKQLSVMRIGILNLREALKD----SKLEQLCVEAKASVVE 285 (286)
T ss_pred -HhHHHHHHHHhhchhhhHHHHHhCchHhhccceehHHHHhh----CccHHHHHhhhhcccC
Confidence 46899999999999999999999999999999999999754 9999999999877653
No 2
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=100.00 E-value=8.2e-44 Score=355.51 Aligned_cols=194 Identities=26% Similarity=0.368 Sum_probs=156.3
Q ss_pred ccccCCcceEEEEEeCCC--CEEEEEecCCCCCCCCCCCCCcCCcccCCCCCCCccccCcchhhhhhhhhhc-cCCCCCC
Q 037804 150 IPIHGGLGGAYYFKNSKG--EHVAIVKPTDEEPFAPNNPKGFAGKALGQPGLKRSVRVGETGFREVAAYLLD-YDHFAKV 226 (609)
Q Consensus 150 ~~i~~GsgGsYf~~~~~G--~~vaVFKP~DEEP~a~nNPk~~~~r~~g~~gf~rg~lvGe~a~REvAAYLLD-~~gf~~V 226 (609)
-+|.++||+||++....| ...|||||+.+| +|+| .|..|| +|.||||||||| +.||++|
T Consensus 10 gri~~aSN~t~~~~~~~~~~~~~~VYKPv~gE-----rPLW---------DFpdGt----La~REvAAYlvs~~lGw~~V 71 (253)
T TIGR03843 10 GRLVDASNATLLCEVTLGGVSARAVYKPVRGE-----RPLW---------DFPDGT----LAGREVAAYLVSEALGWGLV 71 (253)
T ss_pred EEEccccceeEEEEEecCCeeEEEEECCcCCc-----cccc---------cCCCCc----hHHHHHHHHHHHHHhCCCcC
Confidence 368899999999998765 367999999999 8999 344455 589999999999 5699999
Q ss_pred CCeeEEEeeccccccCcccccccccCCCCCCccceeeeccCCCCC--------CCCCCCCCCC-----------------
Q 037804 227 PPTVLVKVRHSIFNLNDGMIGNKLQNGKKVSKIASLQQFVPHDFD--------ASDHGTSSFP----------------- 281 (609)
Q Consensus 227 P~T~lV~~~hp~F~~~~~~~g~~~~~~~~~~KiGSlQ~FV~~~~~--------a~d~g~~~F~----------------- 281 (609)
|+|+++ +|+. ++||+|+||+++.+ +++..++-|+
T Consensus 72 PpTvlr----------DGP~-----------G~GmvQlwie~~~~~~lv~l~~~~~~~~g~~~v~~~~d~~g~~v~l~h~ 130 (253)
T TIGR03843 72 PPTVLR----------DGPF-----------GPGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRAEDEEGEPVVLVHA 130 (253)
T ss_pred CCeeee----------cCCC-----------CCceEEEeccCCCccchhhcccccccCCccccccccccccCcceeeccc
Confidence 999997 4544 49999999998754 2344455454
Q ss_pred -hhhHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcccCCCCCcccccCCCCCCCCCHHHHHHHH
Q 037804 282 -VAAIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPESLEDPYFEWMHWPQASIPFSEDELEYIR 360 (609)
Q Consensus 282 -v~evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~~~~d~~f~Wl~WPqA~~PFS~e~l~yI~ 360 (609)
..++|||+|||++|+|+|||+||||+.+ +|+ |+|||||||||+ +++|+|++|+|+++|||+++++||+
T Consensus 131 d~~~l~riaVfDi~inNaDRk~GhiL~~~---dg~-----l~~IDHGl~f~~---~~klrtvlW~wag~Pls~e~l~~i~ 199 (253)
T TIGR03843 131 DHPQLRRMAVFDALVNNADRKGGHVLPGP---DGR-----VWGVDHGVCFHV---EPKLRTVLWGWAGEPLPAELLADLA 199 (253)
T ss_pred ccHHHhhhhhheeeeecCCCCCCcEeEcC---CCc-----EEEecCceecCC---CCcccccccccccCCCCHHHHHHHH
Confidence 2468999999999999999999999987 444 999999999999 8999999999999999999999999
Q ss_pred cCChhhhH---HHHHhcCCCchHHHHHHHHHHHHHHHH
Q 037804 361 NLNPAHDS---EMLRTELPMIREACLRVLILSTVFLQE 395 (609)
Q Consensus 361 ~LD~~~D~---~~Lr~~l~~ire~clr~l~i~t~lLK~ 395 (609)
+|+.+.+. +.|...| -.+|...+.+.+..||..
T Consensus 200 ~L~~~l~~~l~~~L~~ll--t~~Ei~Al~~R~~~Ll~~ 235 (253)
T TIGR03843 200 RLRDDLDGDLGRELAELL--TPEEVAALRRRVDRLLET 235 (253)
T ss_pred HHHHhhcChHHHHHHHhC--CHHHHHHHHHHHHHHHhC
Confidence 99987753 3344433 245555555666666643
No 3
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.63 E-value=8.5e-16 Score=137.10 Aligned_cols=75 Identities=20% Similarity=0.330 Sum_probs=71.7
Q ss_pred ccccccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 18 LGAKSSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 18 ~~~rlsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
+-+|++|.|+|||||++|++++++|++++||.+||++|++++|||+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 20 ~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~ 98 (103)
T cd01802 20 YKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVL 98 (103)
T ss_pred EeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 678899999999999999999999999999999999999999999999999999999999985 999999999963
No 4
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.63 E-value=8.8e-16 Score=127.73 Aligned_cols=67 Identities=21% Similarity=0.312 Sum_probs=64.7
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|+|||.+|++++++|++++||++||++|++++|||+++|+|+|+|++|+|+.+ +|+++++|||+.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~ 71 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVV 71 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999999885 999999999974
No 5
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.5e-16 Score=127.24 Aligned_cols=66 Identities=23% Similarity=0.377 Sum_probs=63.5
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
|.|.|||++||.+.++++++|+|+.+|++|++++|||+.||||||.|+|+.||.+ ++..+|+||||
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5799999999999999999999999999999999999999999999999999996 89999999986
No 6
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.59 E-value=2.7e-15 Score=125.01 Aligned_cols=64 Identities=14% Similarity=0.276 Sum_probs=61.2
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
||||||+ +++++++|++++||++||++|++++|||+++|+|+|+|++|+|+.+ +|++++||||+
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVA 68 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 7999999 5899999999999999999999999999999999999999999985 99999999995
No 7
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.58 E-value=3.8e-15 Score=126.45 Aligned_cols=67 Identities=13% Similarity=0.216 Sum_probs=63.2
Q ss_pred eEEEEEeCCCcE-EEEE-eccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCV-LGME-LDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~-~~~e-Ve~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|||||.+|++ ++++ |++++||++||++|++++|||+++|||+|+|+.|+|+.+ ||+++++|||+.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~ 73 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLV 73 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 799999999997 6995 899999999999999999999999999999999999885 999999999953
No 8
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.58 E-value=3.7e-15 Score=122.60 Aligned_cols=65 Identities=25% Similarity=0.420 Sum_probs=62.8
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 28 VFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 28 IfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|||||.+|+++.++|++++||++||++|++++|+|+++|+|+|+|++|+|+.+ +|+++|||||++
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 79999999999999999999999999999999999999999999999999885 999999999986
No 9
>PTZ00044 ubiquitin; Provisional
Probab=99.58 E-value=5.9e-15 Score=122.45 Aligned_cols=67 Identities=18% Similarity=0.302 Sum_probs=64.1
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|||||.+|++++++|++++||++||++|+++.|||+++|||+|+|+.|+|+.+ +++++++|||+.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999998874 999999999964
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.54 E-value=1.5e-14 Score=120.52 Aligned_cols=65 Identities=14% Similarity=0.285 Sum_probs=62.6
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 28 VFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 28 IfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|||||..|++++++|++++||.+||++|+++.|||+++|+|+|+|++|+|+.+ +|+++++|||+.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 79999999999999999999999999999999999999999999999999985 999999999964
No 11
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.4e-15 Score=136.28 Aligned_cols=66 Identities=32% Similarity=0.504 Sum_probs=64.3
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
|||||+|.+|||++++||+++||..||.+|+.++|||+++|+|+|+|++|+|..| ||+..+|||++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~ 70 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhh
Confidence 6899999999999999999999999999999999999999999999999999996 99999999996
No 12
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.3e-15 Score=141.32 Aligned_cols=66 Identities=33% Similarity=0.520 Sum_probs=64.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
|+|||||++|+++.++|++++||..||++||+++|||++||||||.|++|+|+++ +|+..+||||+
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~ 70 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEE
Confidence 7899999999999999999999999999999999999999999999999999874 99999999995
No 13
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.53 E-value=2.7e-14 Score=120.14 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=63.7
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
|+|+|||..|+++.++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.+ +|+++++|||-
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999985 99999999994
No 14
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.51 E-value=3.6e-14 Score=118.22 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=60.7
Q ss_pred EEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 29 FVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 29 fVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
.||+.+|+++.++|++++||++||++|++++|||+++|+|+|+|+.|+|+.+ +|++++||||+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVI 68 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 5899999999999999999999999999999999999999999999999985 89999999996
No 15
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.50 E-value=9.6e-14 Score=114.22 Aligned_cols=67 Identities=22% Similarity=0.375 Sum_probs=64.3
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|+||+.+|+++.++|+++.||.+||++|+++.|+|+++|||+|+|+.|.|+.+ +++++++|||+.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEE
Confidence 7899999999999999999999999999999999999999999999999999875 999999999975
No 16
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.49 E-value=1e-13 Score=112.91 Aligned_cols=67 Identities=13% Similarity=0.277 Sum_probs=64.4
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|+||+.+|++++++|++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+ +++++++|||++
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 6899999999999999999999999999999999999999999999999999885 999999999975
No 17
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.49 E-value=1.2e-13 Score=114.72 Aligned_cols=67 Identities=15% Similarity=0.315 Sum_probs=64.1
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCC--CCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNI--PTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGI--P~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|+|||.+|+++.++|++++||.+||++|++++|+ |+++|+|+|+|+.|+|+.+ +|+++++||++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~ 73 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMV 73 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEE
Confidence 799999999999999999999999999999999999 9999999999999999874 999999999964
No 18
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.48 E-value=1e-13 Score=114.13 Aligned_cols=67 Identities=31% Similarity=0.485 Sum_probs=64.3
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|+||+.+|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+ +++++++|||+.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 7899999999999999999999999999999999999999999999999999885 999999999964
No 19
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.46 E-value=1.7e-13 Score=115.94 Aligned_cols=67 Identities=16% Similarity=0.349 Sum_probs=64.3
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
.|+|+||+.+|+++.++|+++.||++||++|+++.|+|+++|||+|+|+.|+|+ + ||+++++|||+.
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~ 71 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVP 71 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEe
Confidence 489999999999999999999999999999999999999999999999999988 5 999999999986
No 20
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.45 E-value=1.8e-13 Score=113.70 Aligned_cols=64 Identities=16% Similarity=0.278 Sum_probs=60.3
Q ss_pred EEEEeC-CCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccC-C----cCCCCCCeeeee
Q 037804 28 VFVQTE-TGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNND-L----SAIKKDSALLLT 91 (609)
Q Consensus 28 IfVKTl-tGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd-~----t~I~~dStLHLv 91 (609)
|+|||. +|+++.++|++++||++||++|++++|||+++|+|+|+|+.|+|+ . ++|+++++|||.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 689999 999999999999999999999999999999999999999999987 3 399999999983
No 21
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.43 E-value=3.7e-13 Score=111.19 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=61.6
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
+.|+|||.+|+. +++|++++||++||++|++++|||+++|+|+|+|++|+|+.+ +++++++|||+-
T Consensus 1 ~~i~vk~~~g~~-~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 1 IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred CEEEEEcCCCCE-EEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEE
Confidence 469999999984 999999999999999999999999999999999999999874 999999999963
No 22
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.42 E-value=4e-13 Score=113.83 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=64.2
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEE--EeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSL--TFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRL--If~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|+||+.+|+++.++|++++||.+||++|+++.|+|+++||| +|+|+.|+|+.+ ||+++++|||+.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~ 75 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVV 75 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEE
Confidence 8999999999999999999999999999999999999999999 899999999875 999999999964
No 23
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.38 E-value=1.2e-12 Score=112.42 Aligned_cols=67 Identities=10% Similarity=0.049 Sum_probs=58.6
Q ss_pred eEEEEEeCCCcE--EEEEeccCCCHHHHHHHHHHHhC--CCCCCcEEEeCCeeeccCCc------CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCV--LGMELDRNDNAHTVKRRLQLALN--IPTDESSLTFGDLTLNNDLS------AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~--~~~eVe~sdTV~~VKqkIqekeG--IP~eqQRLIf~Gk~LeDd~t------~I~~dStLHLvR 92 (609)
+.|+|||++|++ |.++|++++||.+||++|++..+ .|+++|||||.|+.|+|+.+ .+.++.|||||-
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 679999999999 55555899999999999999874 45799999999999999875 488999999983
No 24
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.30 E-value=6.8e-12 Score=102.01 Aligned_cols=62 Identities=24% Similarity=0.448 Sum_probs=59.2
Q ss_pred EeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 31 QTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 31 KTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
||.+|+++.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~ 66 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVI 66 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEE
Confidence 79999999999999999999999999999999999999999999988875 999999999964
No 25
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.28 E-value=1e-11 Score=101.34 Aligned_cols=65 Identities=17% Similarity=0.242 Sum_probs=61.4
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
++|+||+. |+++.++|+++.||.+||++|+++.|+|+++|+|+|+|+.|.|+.+ +|+++++||++
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 57999997 9999999999999999999999999999999999999999998774 89999999986
No 26
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.27 E-value=2e-11 Score=105.39 Aligned_cols=70 Identities=7% Similarity=0.141 Sum_probs=66.7
Q ss_pred ccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 22 SSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 22 lsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
-+.-++|+||+.+|+++.|+|.+++++..||++++++.|||+++|||+|+|++|.++.| +++++++||++
T Consensus 8 ~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~ 81 (87)
T cd01763 8 ISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVM 81 (87)
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 45669999999999999999999999999999999999999999999999999999886 99999999996
No 27
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.19 E-value=4.1e-11 Score=100.64 Aligned_cols=60 Identities=15% Similarity=0.312 Sum_probs=57.1
Q ss_pred CCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 33 ETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 33 ltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
++|+++.++|++++||.+||++|+...|||+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~ 68 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQL 68 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEE
Confidence 589999999999999999999999999999999999999999999985 999999999963
No 28
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=1.8e-10 Score=123.63 Aligned_cols=67 Identities=12% Similarity=0.282 Sum_probs=63.5
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhC---CCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALN---IPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeG---IP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|+|||+.|+++.|+|++++||.+||++|++..| +|+++|+|||+|+.|+|+.+ +|+++++|+++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv 74 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMV 74 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999998 99999999999999999985 899999998854
No 29
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.07 E-value=3.9e-10 Score=88.99 Aligned_cols=60 Identities=20% Similarity=0.345 Sum_probs=54.7
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCC
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDS 86 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dS 86 (609)
|+|+||+.+ +++.++|+++.||++||++|+.+.|+|++.|+|+|+|+.|.|+.+ ++++++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 689999999 799999999999999999999999999999999999999998764 666543
No 30
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.05 E-value=1.7e-10 Score=98.35 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=45.0
Q ss_pred cCCCHHHHHHHHHHH--hCCC-CCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 44 RNDNAHTVKRRLQLA--LNIP-TDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 44 ~sdTV~~VKqkIqek--eGIP-~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
.++||.+||++|+++ +|++ +++|||||+|++|+|+.+ +|+++++|||||
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 478999999999999 4675 899999999999999986 999999999997
No 31
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.03 E-value=6.8e-10 Score=93.55 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=60.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEe---CCeeeccCCc----CCCCCCeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTF---GDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf---~Gk~LeDd~t----~I~~dStLHLv 91 (609)
+.|.||- .|+++.++|++++||++||++|+++.|||+++|+|+| +|+.|.|+.+ +|.+++.|+|+
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 4678886 8999999999999999999999999999999999996 8999999875 89999999986
No 32
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.02 E-value=5e-10 Score=94.84 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=55.4
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccC-Cc----CCC-CCCeeee
Q 037804 28 VFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNND-LS----AIK-KDSALLL 90 (609)
Q Consensus 28 IfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd-~t----~I~-~dStLHL 90 (609)
|-=|-..|.+++++|++++||++||++|++++|||+++||| |+|++|.++ .+ +++ +|++|||
T Consensus 5 ~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 5 VEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred EeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEE
Confidence 44467789999999999999999999999999999999999 999999644 43 888 7899998
No 33
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.99 E-value=6.7e-10 Score=121.15 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=70.3
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeeecccCCCC
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTRNAMHRSS 99 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvRn~ihRSS 99 (609)
-.++|.|||..+ +..|.|....||..+|+.|+..+++|+|+|+|||.||.|+|+.+ +|+++.|||||+...+|..
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~~ 92 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRPT 92 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCCC
Confidence 348899999998 99999999999999999999999999999999999999999886 9999999999986566655
Q ss_pred CCC
Q 037804 100 SSP 102 (609)
Q Consensus 100 stP 102 (609)
.++
T Consensus 93 ~~~ 95 (493)
T KOG0010|consen 93 GTA 95 (493)
T ss_pred Ccc
Confidence 533
No 34
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=98.91 E-value=1e-10 Score=115.48 Aligned_cols=102 Identities=26% Similarity=0.303 Sum_probs=68.1
Q ss_pred CCCccceeeeccCCCCCCCCCC-CCCCChhhHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCc--
Q 037804 255 KVSKIASLQQFVPHDFDASDHG-TSSFPVAAIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLP-- 331 (609)
Q Consensus 255 ~~~KiGSlQ~FV~~~~~a~d~g-~~~F~v~evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP-- 331 (609)
...+.++.|.|+....+++++. ....-+.+++.++|+||++.|.|||.+|||+... +| ++++||||+||+
T Consensus 95 ~~~~~~~~~~f~~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~--~g-----~~~hIDfg~~f~~~ 167 (235)
T PF00454_consen 95 KVPKDGLRQYFLKSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHPGNILIDKK--TG-----ELIHIDFGFIFGGK 167 (235)
T ss_dssp ---TTHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ET--TS-----EEEE--HSSCTTHH
T ss_pred ccccchHHHHHHhcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCchhheeccc--cc-----eeeeEEeHHhhhcc
Confidence 3567899999998877775554 3333468899999999999999999999999542 33 499999999999
Q ss_pred --ccCCCCCcccccCCCCCCCCCHHHHHHHHcC----ChhhhHHHHHhcCC
Q 037804 332 --ESLEDPYFEWMHWPQASIPFSEDELEYIRNL----NPAHDSEMLRTELP 376 (609)
Q Consensus 332 --~~~~d~~f~Wl~WPqA~~PFS~e~l~yI~~L----D~~~D~~~Lr~~l~ 376 (609)
...+...|+|-- ..+..+ ++..+...+|..+.
T Consensus 168 ~~~~~e~vPFrLT~-------------~~~~~~~~~l~~~~~~g~f~~~~~ 205 (235)
T PF00454_consen 168 HLPVPETVPFRLTR-------------NMVNAMGGYLGPSGVEGLFRSSCE 205 (235)
T ss_dssp HGSSSS--SSTTHH-------------HHHHHTTTSSSTSHHHHHHHHHHH
T ss_pred ccCCCCCCCeEeCH-------------HHHHHHhccCCCchhHhHHHHHHH
Confidence 223334455543 444444 88888888887653
No 35
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.79 E-value=1.9e-08 Score=80.32 Aligned_cols=62 Identities=24% Similarity=0.433 Sum_probs=58.3
Q ss_pred EEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 30 VQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 30 VKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
||..+|+++.+++.++.||++||++|++..|+|++.|+|+|+|+.|+|+.+ ++.++++||++
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEE
Confidence 788899999999999999999999999999999999999999999988774 89999999985
No 36
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.79 E-value=2.9e-08 Score=78.14 Aligned_cols=66 Identities=29% Similarity=0.477 Sum_probs=62.2
Q ss_pred EEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 27 RVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 27 qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
+++|+|..|+++.+++.++++|..+|.+|+...|+|..+|+|+++|+.|+|+.+ +|...+++||+.
T Consensus 1 ~~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~ 70 (75)
T KOG0001|consen 1 QIFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVL 70 (75)
T ss_pred CEEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEE
Confidence 479999999999999999999999999999999999999999999999998874 899999999964
No 37
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.70 E-value=7.4e-08 Score=79.21 Aligned_cols=66 Identities=12% Similarity=0.219 Sum_probs=61.3
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCC-CCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPT-DESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~-eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
|+|+|++.+|+++.+.|.++.+++.|+++++++.|+|. ++.+|+|+|+.|..+.| +++++++|+++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 68999999999999999999999999999999999999 89999999999998887 99999999985
No 38
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.69 E-value=2.7e-08 Score=90.76 Aligned_cols=67 Identities=12% Similarity=0.005 Sum_probs=55.5
Q ss_pred CeEEEEEeCCCcE-EEEEeccCCCHHHHHHHHH-----HHhCCC--CCCcEEEeCCeeeccCCc----C------CCCCC
Q 037804 25 TRRVFVQTETGCV-LGMELDRNDNAHTVKRRLQ-----LALNIP--TDESSLTFGDLTLNNDLS----A------IKKDS 86 (609)
Q Consensus 25 ~~qIfVKTltGk~-~~~eVe~sdTV~~VKqkIq-----ekeGIP--~eqQRLIf~Gk~LeDd~t----~------I~~dS 86 (609)
.+-|..|-..|.- =.+.+++++||++||++|+ .++|+| +++|+|||.|++|+|+.+ + +...+
T Consensus 4 ~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~ 83 (113)
T cd01814 4 QIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVI 83 (113)
T ss_pred cEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCce
Confidence 3456666677744 3567889999999999999 667788 999999999999999985 5 77889
Q ss_pred eeeee
Q 037804 87 ALLLT 91 (609)
Q Consensus 87 tLHLv 91 (609)
|+|||
T Consensus 84 TmHvv 88 (113)
T cd01814 84 TMHVV 88 (113)
T ss_pred EEEEE
Confidence 99995
No 39
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.47 E-value=3e-07 Score=96.69 Aligned_cols=65 Identities=15% Similarity=0.351 Sum_probs=59.6
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhC--CCCCCcEEEeCCeeeccCCc----CCCCCCeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALN--IPTDESSLTFGDLTLNNDLS----AIKKDSALLL 90 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeG--IP~eqQRLIf~Gk~LeDd~t----~I~~dStLHL 90 (609)
|.|+|||+.|.+|+++|.+++||..||++|+...| .|.++|.|||.|+.|.|+.+ +|.++.-|-+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVv 71 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVV 71 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEE
Confidence 68999999999999999999999999999999988 89999999999999999985 7777765555
No 40
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.45 E-value=3.6e-07 Score=81.98 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=51.4
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCC-c----CCCCCCeeeee
Q 037804 36 CVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDL-S----AIKKDSALLLT 91 (609)
Q Consensus 36 k~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~-t----~I~~dStLHLv 91 (609)
+..++.|.+++||+.||.+|+.++++|+++|+|+|+|+.|.||- + +|..+|+|+|.
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Ll 75 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLK 75 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEE
Confidence 45678899999999999999999999999999999999998876 3 99999999995
No 41
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.21 E-value=6.9e-06 Score=70.86 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=53.8
Q ss_pred EEEEEeC-CCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEE-EeCCe-----eeccCC-c----CCCCCCeeeeee
Q 037804 27 RVFVQTE-TGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSL-TFGDL-----TLNNDL-S----AIKKDSALLLTR 92 (609)
Q Consensus 27 qIfVKTl-tGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRL-If~Gk-----~LeDd~-t----~I~~dStLHLvR 92 (609)
.|+|++. +.+.....+.++.||.+||+||+...|+|+..||| +|.|+ .|.||. + +++++++||++.
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 5677764 34555666999999999999999999999999999 58877 575554 2 999999999985
No 42
>PLN02560 enoyl-CoA reductase
Probab=98.21 E-value=3e-06 Score=89.27 Aligned_cols=66 Identities=15% Similarity=0.275 Sum_probs=57.8
Q ss_pred eEEEEEeCCCcEE---EEEeccCCCHHHHHHHHHHHhCC-CCCCcEEEeC---C----eeeccCCc----CCCCCCeeee
Q 037804 26 RRVFVQTETGCVL---GMELDRNDNAHTVKRRLQLALNI-PTDESSLTFG---D----LTLNNDLS----AIKKDSALLL 90 (609)
Q Consensus 26 ~qIfVKTltGk~~---~~eVe~sdTV~~VKqkIqekeGI-P~eqQRLIf~---G----k~LeDd~t----~I~~dStLHL 90 (609)
|+|.||+.+|+.+ +++|+++.||++||++|+++.++ ++++|||++. | ..|+|+.+ +++++++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6899999999998 89999999999999999999987 8899999983 3 37887764 8899999888
Q ss_pred e
Q 037804 91 T 91 (609)
Q Consensus 91 v 91 (609)
-
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 3
No 43
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.7e-06 Score=101.12 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=61.9
Q ss_pred EEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 27 RVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 27 qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
.|.|||++.++-+|-+...+||..+|..|.++.+|+.+.|||||.|++|.||++ +| ++-|||||.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlve 72 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVE 72 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeec
Confidence 389999999999999999999999999999999999999999999999999986 78 899999984
No 44
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.72 E-value=0.00018 Score=52.86 Aligned_cols=61 Identities=16% Similarity=0.329 Sum_probs=54.4
Q ss_pred EeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCC----cCCCCCCeeeee
Q 037804 31 QTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDL----SAIKKDSALLLT 91 (609)
Q Consensus 31 KTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~----t~I~~dStLHLv 91 (609)
+..+|....+.+.+..||++||++|+++.|++++.|.|+++|..+.+.. +++.++++|+++
T Consensus 3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 67 (69)
T cd00196 3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLV 67 (69)
T ss_pred EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 3347899999999999999999999999999999999999999998776 378899999885
No 45
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=97.48 E-value=0.00053 Score=59.04 Aligned_cols=67 Identities=16% Similarity=0.317 Sum_probs=51.9
Q ss_pred eEEEEEeCCC--cEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeC----C---eeeccCC-c----CCCCCCeeeee
Q 037804 26 RRVFVQTETG--CVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFG----D---LTLNNDL-S----AIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltG--k~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~----G---k~LeDd~-t----~I~~dStLHLv 91 (609)
+.|+|....- +.....+..+.||++||++|+...|+|++.|+|.+. + ..|.|+. + +++++.+||++
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 3567776655 489999999999999999999999999999999765 2 2344443 2 89999999996
Q ss_pred e
Q 037804 92 R 92 (609)
Q Consensus 92 R 92 (609)
-
T Consensus 82 D 82 (87)
T PF14560_consen 82 D 82 (87)
T ss_dssp E
T ss_pred e
Confidence 4
No 46
>KOG3829 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.00069 Score=73.66 Aligned_cols=173 Identities=22% Similarity=0.281 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHCCCCCccccCCcceE---EEEEeCCCCEEEEEecCC----CCCCCCCCCCCcCCcccCCCCCCCccccC
Q 037804 134 ELVKEIVEGIKNGVEPIPIHGGLGGA---YYFKNSKGEHVAIVKPTD----EEPFAPNNPKGFAGKALGQPGLKRSVRVG 206 (609)
Q Consensus 134 ~lv~~v~~ai~~G~~P~~i~~GsgGs---Yf~~~~~G~~vaVFKP~D----EEP~a~nNPk~~~~r~~g~~gf~rg~lvG 206 (609)
+++..+..|+..--. +.+..+-+|| ..++=++++ -+||||.. ||- -|--| .||-|
T Consensus 151 ~~~~alL~~l~~~pI-~~v~v~~~GtqLKlll~~~~~~-KavfKPmR~~Rd~~~----~~~yf-------s~~dR----- 212 (486)
T KOG3829|consen 151 QSMGALLHALRTEPI-TRVSVLGRGTQLKLLLRLSHQQ-KVVFKPMRYPRDEVI----DGMYY-------SGFDR----- 212 (486)
T ss_pred hhHHHHHHHhhcCcc-eEEeecCCceEEEEEEEecCCc-eeeeccccCCccccC----CCccc-------ccccc-----
Confidence 666777777764221 2445555666 445545444 68999963 332 11112 12222
Q ss_pred cchhhhhhhhhhcc-CCCCCCCCeeE--EEeecc-----------ccccCcccc----cc------c--ccCCCCCCccc
Q 037804 207 ETGFREVAAYLLDY-DHFAKVPPTVL--VKVRHS-----------IFNLNDGMI----GN------K--LQNGKKVSKIA 260 (609)
Q Consensus 207 e~a~REvAAYLLD~-~gf~~VP~T~l--V~~~hp-----------~F~~~~~~~----g~------~--~~~~~~~~KiG 260 (609)
=--||||+-||+ .||..+|||+= |.++-. +|+..-+.+ |+ . ..=....-+.|
T Consensus 213 --HnAEiAAFHLDRiL~FrRappvVGRvvNlttEI~~~a~~~LlqtfFvsp~~N~CF~gKC~YyC~t~~avCg~pdmlEG 290 (486)
T KOG3829|consen 213 --HNAEVAAFHLDRVLDFRRAPPVVGRVVNLTTEIYEKAEEELLQTFFVSPAENYCFFGKCDYYCDTEEAVCGDPDMLEG 290 (486)
T ss_pred --cchhhhhhhhhhhhcccccCcccceeeeeehHHHHhhHHHHHhheeeccCcceEEeeccccccCCcccccCCcccccc
Confidence 126999999997 59999999963 333322 233221111 10 0 00112367899
Q ss_pred eeeeccCCCCCCCC-CCC------------CCCC--------------------hhhHhhhcccceEeecCCCCCCceEE
Q 037804 261 SLQQFVPHDFDASD-HGT------------SSFP--------------------VAAIHRIGILDIRIFNTDRHAGNLLV 307 (609)
Q Consensus 261 SlQ~FV~~~~~a~d-~g~------------~~F~--------------------v~evhkIaILDiri~NtDRh~GNiLV 307 (609)
|+|.|+++...... ..+ ..+. +-++=.|+||||+|.|.|||-=--.-
T Consensus 291 S~~~fLP~~~~~prk~~r~Pw~RtY~~~k~a~WE~d~~YCd~VK~~~pY~~g~RLlDliD~aIfDyLiGN~DRHHYEtF~ 370 (486)
T KOG3829|consen 291 SLIAFLPDESTLPRKHRRSPWRRTYKKDKKAEWEDDMNYCDKVKSIKPYDEGRRLLDLIDMAIFDYLIGNMDRHHYETFE 370 (486)
T ss_pred eEEEEcCCcccccccccCCccccccccccccccccchHHHHHhcccCccccchhHHHHHHHHHHHHHhcccchhhhhhhh
Confidence 99999996322110 000 0111 23456899999999999999543221
Q ss_pred EecCCCCCCcceEEEeecccccCcc
Q 037804 308 RKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 308 ~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
.. | +.--++-+|||-+|-.
T Consensus 371 ~f----~--d~s~~ihLDngr~FGr 389 (486)
T KOG3829|consen 371 VF----G--DLSFLIHLDNGRAFGR 389 (486)
T ss_pred cc----C--CcceEEEeccccccCC
Confidence 11 1 1245999999999975
No 47
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.24 E-value=0.00083 Score=56.76 Aligned_cols=64 Identities=11% Similarity=0.235 Sum_probs=49.3
Q ss_pred EEEEEeCCCcEEE-EEec-cCCCHHHHHHHHHHHhC-CCCCCcEEE--eCCeeeccCCc----CCCCCCeeee
Q 037804 27 RVFVQTETGCVLG-MELD-RNDNAHTVKRRLQLALN-IPTDESSLT--FGDLTLNNDLS----AIKKDSALLL 90 (609)
Q Consensus 27 qIfVKTltGk~~~-~eVe-~sdTV~~VKqkIqekeG-IP~eqQRLI--f~Gk~LeDd~t----~I~~dStLHL 90 (609)
.|.+|....+.+. ++++ ++.||++||+.|+++.+ ++++.|||. +.|+.|.|+.+ |+.++++||+
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 4566654424443 4454 88899999999999875 578999995 78999998875 8999999886
No 48
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.16 E-value=0.0021 Score=58.89 Aligned_cols=66 Identities=11% Similarity=0.183 Sum_probs=46.3
Q ss_pred eEEEEEeCCCc-EEEEEeccCCCHHHHHHHHHHH-----hC--CCCCCcEEEeCCeeeccCCc----CCCCC------Ce
Q 037804 26 RRVFVQTETGC-VLGMELDRNDNAHTVKRRLQLA-----LN--IPTDESSLTFGDLTLNNDLS----AIKKD------SA 87 (609)
Q Consensus 26 ~qIfVKTltGk-~~~~eVe~sdTV~~VKqkIqek-----eG--IP~eqQRLIf~Gk~LeDd~t----~I~~d------St 87 (609)
+.|..+-.+|+ +-.+.+++++||.+||++|... .. ..+.+.||||.|+.|+|+.+ .+..+ .+
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 34445556999 8999999999999999999875 11 12346799999999999885 33332 47
Q ss_pred eeee
Q 037804 88 LLLT 91 (609)
Q Consensus 88 LHLv 91 (609)
+|||
T Consensus 83 mHlv 86 (111)
T PF13881_consen 83 MHLV 86 (111)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9995
No 49
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=97.14 E-value=0.0016 Score=60.20 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=48.6
Q ss_pred EEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CC-------CCCCeeeee
Q 037804 37 VLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AI-------KKDSALLLT 91 (609)
Q Consensus 37 ~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I-------~~dStLHLv 91 (609)
++-++++.+.||.+||++|+.-...|+++|||+-.++.|+|+++ |+ ++.++|-|.
T Consensus 13 TiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa 78 (119)
T cd01788 13 TIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLA 78 (119)
T ss_pred EEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEE
Confidence 56679999999999999999999999999999967788999885 77 778999884
No 50
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=96.64 E-value=0.0034 Score=54.26 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=37.4
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeC---Ceeec--cCCc----CCCCCCeeee
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFG---DLTLN--NDLS----AIKKDSALLL 90 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~---Gk~Le--Dd~t----~I~~dStLHL 90 (609)
+-|-|-||+..| +..++|++++|+..||++|++.+++|.+.|.|..+ ...|. ++.+ ||+.|+.|+|
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 347888999887 56889999999999999999999999998887433 12231 1222 7888888877
No 51
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0034 Score=66.63 Aligned_cols=66 Identities=24% Similarity=0.341 Sum_probs=55.6
Q ss_pred EEEEE---eCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 27 RVFVQ---TETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 27 qIfVK---TltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
.|+|+ |..-..++++|+...+|.+||+-++++.|+|++|-++||.|+.|.|+-+ .+...|.+|.++
T Consensus 2 ~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 2 IVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIML 74 (446)
T ss_pred eEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhc
Confidence 44554 4456779999999999999999999999999999999999999998864 455678889874
No 52
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=96.04 E-value=0.024 Score=49.06 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=54.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeC----CeeeccCCc-----CCCCCCeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFG----DLTLNNDLS-----AIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~----Gk~LeDd~t-----~I~~dStLHLv 91 (609)
+||.||-..+..+++.|.|..+|..||++|....|++ .+|||-|- -++|-.+.| ||-.+-.|.|+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~-g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~ll 74 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS-GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLL 74 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc-cceEEEeecCCcccccccccccHhhhcceeccEEEEE
Confidence 4899999999999999999999999999999999998 69999986 456655554 66666666654
No 53
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=95.05 E-value=0.009 Score=50.63 Aligned_cols=38 Identities=32% Similarity=0.262 Sum_probs=27.2
Q ss_pred hhhHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEee
Q 037804 282 VAAIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPI 324 (609)
Q Consensus 282 v~evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpI 324 (609)
+.++-++.+|+++|.|+|||..||=+-.. .+.++|.|+
T Consensus 40 ~~~l~~~~~fn~ligN~D~H~kN~s~l~~-----~~~~~LaP~ 77 (79)
T PF07804_consen 40 VRELFRRLVFNYLIGNTDRHLKNFSFLYD-----GGGWRLAPA 77 (79)
T ss_dssp HHHHHHHHHHHHHCTBS---CCCSEEEEE-----CCEEEE--B
T ss_pred HHHHHHHHHHHHHHcCCcCCcCCEEEEEc-----CCeEEecCC
Confidence 56777999999999999999999988873 235788886
No 54
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.069 Score=59.40 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=58.2
Q ss_pred EEEEEeCCCcEEEEE-eccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccC-C---cCCCCCCeeeeee
Q 037804 27 RVFVQTETGCVLGME-LDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNND-L---SAIKKDSALLLTR 92 (609)
Q Consensus 27 qIfVKTltGk~~~~e-Ve~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd-~---t~I~~dStLHLvR 92 (609)
.|.||- .|+++.++ ++..+|+..+|++|....|+||+.|++.+.|..+.|| + -.|+.+.+|||+=
T Consensus 5 ~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmG 74 (473)
T KOG1872|consen 5 TVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMG 74 (473)
T ss_pred eEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeec
Confidence 366665 78999998 9999999999999999999999999999999999998 3 2799999999973
No 55
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=93.93 E-value=0.044 Score=55.93 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=52.7
Q ss_pred hhhHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcccCCCCCccc-ccCCCCCCCCCHHHHHHHH
Q 037804 282 VAAIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPESLEDPYFEW-MHWPQASIPFSEDELEYIR 360 (609)
Q Consensus 282 v~evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~~~~d~~f~W-l~WPqA~~PFS~e~l~yI~ 360 (609)
+.++=.++|||++|.|+|||.-|.. .+ .|. ..-++-+|||-.|=...-|. +.- +..-|+ --|...|.+.++
T Consensus 89 LldliDm~IFDFLigN~DRhhye~f-~~---fgn--~~~l~~LDNgrgFG~~~~de-~sIlaPL~Qc-C~iRrST~~rL~ 160 (221)
T PF06702_consen 89 LLDLIDMAIFDFLIGNMDRHHYETF-NK---FGN--EGFLLHLDNGRGFGRPSHDE-LSILAPLYQC-CRIRRSTWERLQ 160 (221)
T ss_pred hhHHHHHHHHHHHhcCCcchhhhhh-hc---cCC--CceEEEEeCCcccCCCCCCc-cchhccHHHh-hhccccHHHHHH
Confidence 4566689999999999999999965 33 122 23489999999994321121 111 222233 346666777777
Q ss_pred cCC--hhhhHHHHHhc
Q 037804 361 NLN--PAHDSEMLRTE 374 (609)
Q Consensus 361 ~LD--~~~D~~~Lr~~ 374 (609)
.|. ...-.++||+.
T Consensus 161 ~l~~~~~~Ls~~m~~s 176 (221)
T PF06702_consen 161 LLSKGGYRLSDLMRES 176 (221)
T ss_pred HhccCCCcHHHHHHHH
Confidence 666 44444555544
No 56
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=92.92 E-value=0.16 Score=53.82 Aligned_cols=39 Identities=31% Similarity=0.560 Sum_probs=32.9
Q ss_pred hhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 286 HRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 286 hkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
--..|.=|++.=-|||.+||||.. +|+ ++.||=|++|-.
T Consensus 134 A~ySvv~YvLGigDRH~~NILi~~---~G~-----liHIDFG~~fg~ 172 (293)
T cd05168 134 AGYSLICYLLQIKDRHNGNILIDN---DGH-----IIHIDFGFMLSN 172 (293)
T ss_pred HHHHHHHHHhhccccCCCceEEcC---CCC-----EEEEehHHhhcc
Confidence 355667788888999999999986 555 999999999976
No 57
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=92.04 E-value=0.31 Score=47.81 Aligned_cols=51 Identities=27% Similarity=0.342 Sum_probs=43.5
Q ss_pred eEEEEEeCCC----cEEEEEeccCCCHHHHHHHHHHHhCCCCCCc-EEEeC-Ceeec
Q 037804 26 RRVFVQTETG----CVLGMELDRNDNAHTVKRRLQLALNIPTDES-SLTFG-DLTLN 76 (609)
Q Consensus 26 ~qIfVKTltG----k~~~~eVe~sdTV~~VKqkIqekeGIP~eqQ-RLIf~-Gk~Le 76 (609)
++|||+|..| .++.+.+..+.||.+|+.+|....++|...| .|.+. +++|.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~ 57 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLS 57 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeC
Confidence 5899999999 6999999999999999999999999998775 45553 56663
No 58
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=91.96 E-value=0.35 Score=43.52 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=38.9
Q ss_pred EEEEEeCC-CcEEEEEec--cCCCHHHHHHHHHHHhCCCC--CCcEEEeCCeeeccCC
Q 037804 27 RVFVQTET-GCVLGMELD--RNDNAHTVKRRLQLALNIPT--DESSLTFGDLTLNNDL 79 (609)
Q Consensus 27 qIfVKTlt-Gk~~~~eVe--~sdTV~~VKqkIqekeGIP~--eqQRLIf~Gk~LeDd~ 79 (609)
.|.|+-.+ -.-+.+++. .+.||..||++|.+..+-.+ ..+||||+|+.|.|..
T Consensus 2 ~l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t 59 (97)
T PF10302_consen 2 YLTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHT 59 (97)
T ss_pred eEEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccc
Confidence 45555443 334677777 88999999999999973222 3568899999998864
No 59
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=91.81 E-value=0.39 Score=50.78 Aligned_cols=66 Identities=24% Similarity=0.472 Sum_probs=43.4
Q ss_pred hhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcccCCCCCcccccCCCCCCCCCHHHHHHHHcCC
Q 037804 286 HRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPESLEDPYFEWMHWPQASIPFSEDELEYIRNLN 363 (609)
Q Consensus 286 hkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~~~~d~~f~Wl~WPqA~~PFS~e~l~yI~~LD 363 (609)
--..|.=|++.=-|||.||||+.. +|+ ++.||-|++|-. .|... +....+-.-++++.++.+-..+
T Consensus 132 A~ySvv~YiLgigDRH~~NILid~---~G~-----liHIDFG~ilg~---~p~~~-~~~E~~PFrLT~emv~~mGg~~ 197 (289)
T cd00893 132 AGYSLLCYLLQIKDRHNGNILLDS---DGH-----IIHIDFGFILDS---SPGNN-LGFEPAAFKFTKEMVDFMGGKK 197 (289)
T ss_pred HHHHHHHHHhhccccCCCceEECC---CCC-----EEEEehHHhhCc---CCcCC-CCCCCCCeeecHHHHHHhCCCC
Confidence 355667788888999999999976 555 999999999986 33221 0011222234666666654443
No 60
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.18 E-value=1.4 Score=40.18 Aligned_cols=70 Identities=9% Similarity=0.184 Sum_probs=62.3
Q ss_pred cCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 23 SGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 23 sd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
+.-+.+.|+--.|.++.|.|.++.....|+.--.++.|++..+-|++|+|+.+..+.| ..+++.+|-.+.
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQ 91 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEe
Confidence 4557778888889999999999999999999999999999999999999999998886 788888888875
No 61
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=90.60 E-value=0.23 Score=53.97 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=50.0
Q ss_pred hhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcccCCCCCcccccCCCCCCCCCHHHHHHHH
Q 037804 286 HRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPESLEDPYFEWMHWPQASIPFSEDELEYIR 360 (609)
Q Consensus 286 hkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~~~~d~~f~Wl~WPqA~~PFS~e~l~yI~ 360 (609)
---+|.=|++.=-|||.||||+.. +|+ ++.||=|+.|-. .++++.+....+-.+|++|.++-|.
T Consensus 196 AgYsV~tYiLgIgDRHndNImi~~---~Gh-----lfHIDFG~iLg~---~~~~g~~~re~~PF~Lt~emv~vm~ 259 (354)
T cd00895 196 AGCCVATYVLGICDRHNDNIMLKT---TGH-----MFHIDFGRFLGH---AQMFGNIKRDRAPFVFTSDMAYVIN 259 (354)
T ss_pred HHHHHHHHHccccccCCCceeEcC---CCC-----EEEEeeHHhcCC---CcccCCCCcCCCCccccHHHHHHhc
Confidence 456778899999999999999986 555 999999999987 5567766665555556887776664
No 62
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=90.40 E-value=1.2 Score=37.41 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=40.9
Q ss_pred eCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeee
Q 037804 32 TETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLL 90 (609)
Q Consensus 32 TltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHL 90 (609)
+.+|+.+++.|.++.++.+|=++.-+++|+.+++=.|.|+++.|+-+.. |+.+++.|-|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 5689999999999999999999999999999998899999999977663 8888888754
No 63
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=90.39 E-value=0.51 Score=50.47 Aligned_cols=65 Identities=18% Similarity=0.399 Sum_probs=43.4
Q ss_pred hhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcccCCCCCcccccCCCCCCCCCHHHHHHHHcCC
Q 037804 287 RIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPESLEDPYFEWMHWPQASIPFSEDELEYIRNLN 363 (609)
Q Consensus 287 kIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~~~~d~~f~Wl~WPqA~~PFS~e~l~yI~~LD 363 (609)
--+|.=|++.=-|||.||||+.. +|+ ++.||=|++|-. +|. .++-+..+-.-++.+.++.+-...
T Consensus 154 gysv~tYiLgigDRHn~NILid~---~G~-----l~HIDFG~il~~---~p~-~~~~~E~~PFkLT~emv~~mGg~~ 218 (311)
T cd05167 154 AYSLISYLLQIKDRHNGNIMIDD---DGH-----IIHIDFGFIFEI---SPG-GNLKFESAPFKLTKEMVQIMGGSM 218 (311)
T ss_pred HHHHHHHHhhccccCccceEEcC---CCC-----EEEEeeHHhhcc---CCC-CCCCcCCCCEeecHHHHHHhCCCC
Confidence 45667788888999999999987 555 999999999965 221 112222333335676666654443
No 64
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=90.29 E-value=0.5 Score=51.33 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=33.2
Q ss_pred hhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 286 HRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 286 hkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
--.+|.=|++.=-|||.||||+.. +|+ ++.||-|++|-.
T Consensus 195 A~ysvv~YiLgigDRH~~NILl~~---~G~-----l~HIDFG~~lg~ 233 (353)
T cd05166 195 AGCCVATYVLGICDRHNDNIMLTK---SGH-----MFHIDFGKFLGH 233 (353)
T ss_pred HHHHHHHHHhhccccCCCceEECC---CCC-----EEEEeeHHhccc
Confidence 456777889999999999999985 555 999999999964
No 65
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=90.10 E-value=0.7 Score=42.06 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=44.3
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEe-C-CeeeccCCc-----------CCCCCCeeee
Q 037804 36 CVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTF-G-DLTLNNDLS-----------AIKKDSALLL 90 (609)
Q Consensus 36 k~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf-~-Gk~LeDd~t-----------~I~~dStLHL 90 (609)
.++-++.+++.||-+||++++.-.--|++.|||+- . .+.|+|..+ ..++.+++-|
T Consensus 12 ttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q~pA~vgL 79 (110)
T KOG4495|consen 12 TTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQAPATVGL 79 (110)
T ss_pred eeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccccccccCCCceeee
Confidence 46778999999999999999999889999999976 3 356666663 4667777777
No 66
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=89.67 E-value=0.47 Score=51.81 Aligned_cols=39 Identities=28% Similarity=0.415 Sum_probs=32.9
Q ss_pred hhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 286 HRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 286 hkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
--.+|.=|++.=-|||.||||+.. +|+ ++.||-|++|=.
T Consensus 205 AgysvvtYiLGigDRH~~NILi~~---~G~-----l~HIDFG~ilg~ 243 (366)
T cd05165 205 AGYCVATFVLGIGDRHNDNIMVKE---TGQ-----LFHIDFGHILGN 243 (366)
T ss_pred HHHHHHHHHhhccccCCcceEEcC---CCC-----EEEEehHHhhcc
Confidence 356777889999999999999986 555 999999999943
No 67
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=88.83 E-value=0.21 Score=54.37 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=32.2
Q ss_pred hhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 287 RIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 287 kIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
-.+|.=|++.=-|||.|||||.. +|+ ++.||-|++|=.
T Consensus 202 gysVvtYiLGIGDRHn~NILi~~---~G~-----l~HIDFG~ilg~ 239 (361)
T cd05174 202 GYCVATYVLGIGDRHSDNIMIRE---SGQ-----LFHIDFGHFLGN 239 (361)
T ss_pred HHHHHHHHhcccCcCccceeEcC---CCC-----EEEEehHHhhcC
Confidence 56677788899999999999976 555 999999999854
No 68
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=88.38 E-value=0.1 Score=56.13 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=56.0
Q ss_pred eEEEEEeCCCc--EEEEEeccCCCHHHHHHHHHHHh-CCC-CCCcEEEeCCeeeccCCc------CCCCCCeeeeeeccc
Q 037804 26 RRVFVQTETGC--VLGMELDRNDNAHTVKRRLQLAL-NIP-TDESSLTFGDLTLNNDLS------AIKKDSALLLTRNAM 95 (609)
Q Consensus 26 ~qIfVKTltGk--~~~~eVe~sdTV~~VKqkIqeke-GIP-~eqQRLIf~Gk~LeDd~t------~I~~dStLHLvRn~i 95 (609)
..++||..+-+ -+.|..+...||+.||..++... +-| ..+|||||.|+.|.|..| +-....++|||. -
T Consensus 10 v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvc--n 87 (391)
T KOG4583|consen 10 VTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVC--N 87 (391)
T ss_pred eEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhc--C
Confidence 67888887654 68899999999999999988863 222 258999999999999887 233567889985 3
Q ss_pred CCCCCC
Q 037804 96 HRSSSS 101 (609)
Q Consensus 96 hRSSst 101 (609)
||...+
T Consensus 88 sk~v~~ 93 (391)
T KOG4583|consen 88 SKEVVT 93 (391)
T ss_pred CCCCCC
Confidence 454443
No 69
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=88.03 E-value=0.25 Score=53.80 Aligned_cols=39 Identities=33% Similarity=0.459 Sum_probs=32.7
Q ss_pred hhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 286 HRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 286 hkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
--.+|.=|++.=-|||.||||+.. +|+ ++.||=|++|=.
T Consensus 201 AgYsvvtYILGIGDRHn~NILi~~---~G~-----l~HIDFG~ilg~ 239 (362)
T cd05173 201 AGYCVATYVLGIGDRHSDNIMVRK---NGQ-----LFHIDFGHILGN 239 (362)
T ss_pred HHHHHHHHHhhccccCCCceEECC---CCC-----EEEEehHHhhcc
Confidence 355677788899999999999975 555 999999999954
No 70
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=87.66 E-value=0.27 Score=53.24 Aligned_cols=41 Identities=32% Similarity=0.438 Sum_probs=34.4
Q ss_pred hHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 284 AIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 284 evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
..--.+|.=|++.=-|||.||||+.. +|+ ++.||=|++|-.
T Consensus 193 S~A~ysvv~YiLGigDRH~~NILi~~---~G~-----~~HIDFG~ilg~ 233 (350)
T cd00896 193 SCAGYCVITYILGVGDRHLDNLLLTK---DGK-----LFHIDFGYILGR 233 (350)
T ss_pred HHHHHHHHHHHhcccccCCCcEEEcC---CCC-----EEEEEhHHhhCC
Confidence 34466778899999999999999975 565 999999999964
No 71
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=87.63 E-value=0.64 Score=50.44 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=44.6
Q ss_pred HhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcccCCCCC-cccccCCCCCCCC--CHHHHHHHHc
Q 037804 285 IHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPESLEDPY-FEWMHWPQASIPF--SEDELEYIRN 361 (609)
Q Consensus 285 vhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~~~~d~~-f~Wl~WPqA~~PF--S~e~l~yI~~ 361 (609)
.--.+|+=|++.=-|||.||||+.. +|+ ++.||-|++|=. .++ +. .-| -..|| +++.++.+..
T Consensus 195 ~A~ysv~~YiLgigDRH~~NILi~~---~G~-----~~HIDFG~ilg~---~~~~~~--~~~-E~~PFrLT~~mv~~mGg 260 (352)
T cd00891 195 CAGYCVATYVLGIGDRHNDNIMLTK---TGH-----LFHIDFGHFLGN---FKKKFG--IKR-ERAPFVLTPDMAYVMGG 260 (352)
T ss_pred HHHHHHHHHHccccccCCCceEECC---CCC-----EEEEehHHhhcc---CCccCC--CCC-CCCCeeecHHHHHHhCC
Confidence 3456777889999999999999975 565 999999999953 111 11 011 13555 7777776655
Q ss_pred CC
Q 037804 362 LN 363 (609)
Q Consensus 362 LD 363 (609)
.+
T Consensus 261 ~~ 262 (352)
T cd00891 261 GD 262 (352)
T ss_pred CC
Confidence 44
No 72
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=87.32 E-value=0.49 Score=51.49 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=43.0
Q ss_pred HhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcccCCCCCcccccCCCCCCCCCHHHHH
Q 037804 285 IHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPESLEDPYFEWMHWPQASIPFSEDELE 357 (609)
Q Consensus 285 vhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~~~~d~~f~Wl~WPqA~~PFS~e~l~ 357 (609)
.--.+|.=|++.=-|||.||||+.. +|+ ++.||-|++|=. .+++..+...-+=.+|+++.+.
T Consensus 195 ~AgysvvtYiLGigDRHn~NILi~~---~G~-----~~HIDFG~ilg~---~~~~~~~~~E~~PF~LT~emv~ 256 (354)
T cd05177 195 CAGWCVVTFILGVCDRHNDNIMLTH---SGH-----MFHIDFGKFLGH---AQTFGSIKRDRAPFIFTSEMEY 256 (354)
T ss_pred HHHHHHHHHHhcccCcCCCceeEcC---CCC-----EEEEehHHhcCC---CccccCCCcCCCCeeccHHHHH
Confidence 3456778899999999999999975 555 999999999975 3334333222233345665543
No 73
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.35 E-value=2 Score=43.99 Aligned_cols=69 Identities=19% Similarity=0.191 Sum_probs=55.1
Q ss_pred ccCCeEEEEE---eCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCC----cCCCCCCeeee
Q 037804 22 SSGTRRVFVQ---TETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDL----SAIKKDSALLL 90 (609)
Q Consensus 22 lsd~~qIfVK---TltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~----t~I~~dStLHL 90 (609)
.+..-+.+.| |.+++.+.+.+...+||..+|.+++.++|+.+-.||++|.|..|-+.. |+|++++---|
T Consensus 140 p~~~~e~~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 140 PSNHTEPILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL 215 (231)
T ss_pred CCCCCCcchHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEE
Confidence 4444444444 558999999999999999999999999999888999999999997644 58888864333
No 74
>PF09192 Act-Frag_cataly: Actin-fragmin kinase, catalytic; InterPro: IPR015275 This domain assumes a secondary structure consisting of eight beta strands and 11 alpha-helices, organised in two lobes. It is predominantly found in actin-fragmin kinase, it is the catalytic domain that mediates the phosphorylation of actin []. ; PDB: 1CJA_A.
Probab=82.26 E-value=0.56 Score=49.48 Aligned_cols=144 Identities=20% Similarity=0.220 Sum_probs=62.4
Q ss_pred cccCC--cceEEEEEeCCC--CEEEEEecCCCCCCCCCCCCCcCCcccCCCCCCCccccCcchhhhhhhhhhccCCCCCC
Q 037804 151 PIHGG--LGGAYYFKNSKG--EHVAIVKPTDEEPFAPNNPKGFAGKALGQPGLKRSVRVGETGFREVAAYLLDYDHFAKV 226 (609)
Q Consensus 151 ~i~~G--sgGsYf~~~~~G--~~vaVFKP~DEEP~a~nNPk~~~~r~~g~~gf~rg~lvGe~a~REvAAYLLD~~gf~~V 226 (609)
++..| +||.||+..-+| +..+|.|+.-- -..|+=||+|-...=--|
T Consensus 32 ~s~~g~ns~gv~fv~~f~~~~~~avViK~s~t------------------------------~~~E~~~s~La~~Lgv~~ 81 (275)
T PF09192_consen 32 HSEHGVNSGGVFFVATFSGSKEEAVVIKFSST------------------------------IQQEVFASELARWLGVPT 81 (275)
T ss_dssp EEEE-STTS-EEEEEETTE----EEEEE--TT------------------------------HHHHHHHHHHHHHCT---
T ss_pred hhccccCCCCEEEEEEcCCCceEEEEEecCCc------------------------------hHHHHHHHHHHHHhCCCC
Confidence 34445 999999998776 35888887521 257888888875322457
Q ss_pred CCeeEEEeeccccccCcc-cccccccCCCCCCc--------cceeeeccCCCCCCCCCCCC-CCC--------hhhHhhh
Q 037804 227 PPTVLVKVRHSIFNLNDG-MIGNKLQNGKKVSK--------IASLQQFVPHDFDASDHGTS-SFP--------VAAIHRI 288 (609)
Q Consensus 227 P~T~lV~~~hp~F~~~~~-~~g~~~~~~~~~~K--------iGSlQ~FV~~~~~a~d~g~~-~F~--------v~evhkI 288 (609)
|--++++.+.+-|.--.. ........+.+..+ .==++.||++. .-.++... .|. ..++-||
T Consensus 82 P~~Rii~~~~~E~~e~~~~l~~a~~~~~~l~~~i~~el~~a~~liMeyv~G~-~L~e~~~~~~f~~~~~~~~~~~~LG~i 160 (275)
T PF09192_consen 82 PQMRIIESSSSEFQEMSEALLFATSNDDELGDFICSELDKAFFLIMEYVPGK-PLNELNHKEYFSPEKSGEKRLEQLGRI 160 (275)
T ss_dssp --EEEEESSSHHHHHHHHHHH----HH-SSS-HHHHHCT-SEEEEEE---EE-ESTT--SS--SHHHHS-HHHHHHHHHH
T ss_pred CceeeeecCCHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCC-CccccCcccccCCcchHHHHHHHHHhH
Confidence 888888755543321000 00000000111110 11234556531 11122221 122 3456799
Q ss_pred cccceEeecCCCCC------------CceEEEecCCCCCCcceEEEeecccccC
Q 037804 289 GILDIRIFNTDRHA------------GNLLVRKLDGGGRFGQVELIPIDHGLCL 330 (609)
Q Consensus 289 aILDiri~NtDRh~------------GNiLV~~~~~~g~~g~~~LvpIDHGLcf 330 (609)
-+||+.++|.||-. .|||+...+. | ..+..||..++-
T Consensus 161 i~fDi~inN~DRlP~~~l~W~n~gN~~Nil~~~~p~-~----~~~~~i~~~i~~ 209 (275)
T PF09192_consen 161 IAFDIFINNFDRLPCRILNWRNEGNPSNILFYEKPN-G----WYFSLIDSNITC 209 (275)
T ss_dssp HHHHHHHT--SSS----SSS-S---GGGEEEESB---T----T-EEE-S-----
T ss_pred HhhhhhhcCcccCcccccccCCCCChhheEEecccc-c----ceeeeccccccc
Confidence 99999999999966 5788876431 2 347777777753
No 75
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=80.70 E-value=0.74 Score=50.34 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=32.2
Q ss_pred hhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 287 RIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 287 kIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
--+|.=|++.=-|||.|||||.. +|+ |+.||-|++|-.
T Consensus 206 gYsV~tYiLGIgDRHndNImi~~---~G~-----lfHIDFG~ilg~ 243 (365)
T cd00894 206 GYCVATFVLGIGDRHNDNIMITE---TGN-----LFHIDFGHILGN 243 (365)
T ss_pred HHHHHHHhccccCccccceeEcC---CCC-----EEEEeeHHhhCC
Confidence 45666788999999999999986 555 999999999964
No 76
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=79.62 E-value=1.9 Score=47.12 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=33.9
Q ss_pred HhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 285 IHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 285 vhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
.---+|.=|++.=-|||.||||+.. +|+ ++.||=|++|-.
T Consensus 194 ~AgYsv~tYiLGIgDRHn~NILi~~---~Gh-----l~HIDFG~ilg~ 233 (353)
T cd05176 194 CAGCCVATYVLGICDRHNDNIMLRS---TGH-----MFHIDFGKFLGH 233 (353)
T ss_pred HHHHHHHhhhccccCcCCcceEEcC---CCC-----EEEEeeHHhcCC
Confidence 3456778899999999999999976 555 999999999965
No 77
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.60 E-value=3.1 Score=49.19 Aligned_cols=93 Identities=24% Similarity=0.408 Sum_probs=52.1
Q ss_pred hhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcccCCCCCcccccCCCCCCCCCHHHHHHHHcCChhh
Q 037804 287 RIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPESLEDPYFEWMHWPQASIPFSEDELEYIRNLNPAH 366 (609)
Q Consensus 287 kIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~~~~d~~f~Wl~WPqA~~PFS~e~l~yI~~LD~~~ 366 (609)
--.+.=|++==-|||.||||+.. +| |++.||-|+-|-.+-..--|+ -|-.-|+.|.++.+-.||.+.
T Consensus 689 gYSLvcYlLQvKDRHNGNILiD~---EG-----HIIHIDFGFmLsnsPgnvgFE-----sAPFKLT~EylEvmgG~~~d~ 755 (847)
T KOG0903|consen 689 GYSLVCYLLQVKDRHNGNILIDE---EG-----HIIHIDFGFMLSNSPGNVGFE-----SAPFKLTTEYLEVMGGLDSDM 755 (847)
T ss_pred HHHHHHHhhhcccccCCceEecC---CC-----CEEEEeeeeEecCCCCCcccc-----cCchhhHHHHHHHhcCCcHHH
Confidence 34456678888999999999965 33 599999999987632221122 222233555455444444332
Q ss_pred hH---HHHHhcCCCchHHHHHHHHHHHHH
Q 037804 367 DS---EMLRTELPMIREACLRVLILSTVF 392 (609)
Q Consensus 367 D~---~~Lr~~l~~ire~clr~l~i~t~l 392 (609)
-- .++.+-+-.+|.-.-|+..++.++
T Consensus 756 FdyfK~L~l~gf~a~RKhadrIv~lvEiM 784 (847)
T KOG0903|consen 756 FDYFKSLMLQGFMALRKHADRIVLLVEIM 784 (847)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 111121223555556666666555
No 78
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=79.36 E-value=0.78 Score=50.17 Aligned_cols=39 Identities=28% Similarity=0.424 Sum_probs=33.2
Q ss_pred hhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 286 HRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 286 hkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
---+|.=|++.=-|||.||||+.. +|+ ++.||=|++|-.
T Consensus 204 AgYsV~tYiLGIgDRHndNImi~~---~G~-----l~HIDFG~iLg~ 242 (366)
T cd05175 204 AGYCVATFILGIGDRHNSNIMVKD---DGQ-----LFHIDFGHFLDH 242 (366)
T ss_pred HHHHHHHHHhcccccCccceeEcC---CCC-----EEEEehHHhhcC
Confidence 356677789999999999999986 555 999999999964
No 79
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=75.63 E-value=23 Score=29.79 Aligned_cols=67 Identities=16% Similarity=0.259 Sum_probs=50.1
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCC-cEEE--eCCeeeccCC--c----CCCCCCeeee
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDE-SSLT--FGDLTLNNDL--S----AIKKDSALLL 90 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eq-QRLI--f~Gk~LeDd~--t----~I~~dStLHL 90 (609)
+-.+|-||..+|+.+.-....++||+.|.+-|......+... =+|+ |--+.|.++. + ++...++|++
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 346899999999999999999999999999998887666443 3665 4466665443 3 5556666665
No 80
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=74.84 E-value=8.9 Score=34.13 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=34.0
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCC
Q 037804 28 VFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTD 64 (609)
Q Consensus 28 IfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~e 64 (609)
...|+..|+++.|.+.++..+..|++.|.+++|+..+
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~ 39 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDF 39 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc
Confidence 4578999999999999999999999999999999864
No 81
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.76 E-value=1.6 Score=37.15 Aligned_cols=54 Identities=9% Similarity=0.151 Sum_probs=41.0
Q ss_pred EEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc
Q 037804 27 RVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS 80 (609)
Q Consensus 27 qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t 80 (609)
+|.+.---||+..+.+-+.|||+++|.-|+.+.|..++...|=-....++|.++
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~ 56 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHIT 56 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccc
Confidence 444555569999999999999999999999999988877666433444455543
No 82
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=74.69 E-value=1.4 Score=52.22 Aligned_cols=40 Identities=30% Similarity=0.454 Sum_probs=34.0
Q ss_pred HhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 285 IHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 285 vhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
.---+|+-|++.=-|||.|||||.. +|+ |+-||-|+.|-+
T Consensus 1137 ~AGYsViTYILgIgDRHngNILId~---dGh-----LfHIDFGFILg~ 1176 (1374)
T PTZ00303 1137 AKLFLLLNYIFSIGDRHKGNVLIGT---NGA-----LLHIDFRFIFSE 1176 (1374)
T ss_pred HHHHHHHHHHhccCcccCCceeEcC---CCC-----EEEEecceeecC
Confidence 3455678889999999999999988 565 999999999875
No 83
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=72.99 E-value=1.8 Score=42.98 Aligned_cols=41 Identities=27% Similarity=0.431 Sum_probs=35.3
Q ss_pred hHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 284 AIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 284 evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
..--..++-|++.=.|||.+|||+.+ +|+ ++.||=|++|-.
T Consensus 92 SlA~~s~~~YilglgDRh~~NIli~~---~G~-----v~hIDfg~~~~~ 132 (202)
T smart00146 92 SCAGYSVITYILGLGDRHNDNIMLDK---TGH-----LFHIDFGFILGN 132 (202)
T ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeC---CCC-----EEEEechhhhCc
Confidence 34477889999999999999999984 555 999999999975
No 84
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=72.36 E-value=2.1 Score=44.57 Aligned_cols=81 Identities=21% Similarity=0.420 Sum_probs=52.2
Q ss_pred hHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcccCCCCCcccccCCCCCCCC--CHHHHHHHHc
Q 037804 284 AIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPESLEDPYFEWMHWPQASIPF--SEDELEYIRN 361 (609)
Q Consensus 284 evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~~~~d~~f~Wl~WPqA~~PF--S~e~l~yI~~ 361 (609)
+.--.+++=|++.=.|||.+|||+... +|+ ++.||-|.||-..- .+ +..|. ..|| +++..+.+..
T Consensus 172 S~A~~Sv~~YilglgDRH~~NIll~~~--tG~-----v~HIDfg~~f~~~~---~~--~~~pE-~VPFRLT~~~~~~lG~ 238 (280)
T cd05169 172 SLAVMSMVGYILGLGDRHPSNIMIDRL--TGK-----VIHIDFGDCFEVAM---HR--EKFPE-KVPFRLTRMLVNALGV 238 (280)
T ss_pred HHHHHHHHHhheeccCCCcceEEEEcC--CCC-----EEEEecHHHHhhcc---cc--CCCCC-cCCcccCHHHHHHhCC
Confidence 344677788999999999999999874 344 99999999984311 00 01132 2444 6766666654
Q ss_pred CChhhhHHHHHhcCCCchHHHHHHHH
Q 037804 362 LNPAHDSEMLRTELPMIREACLRVLI 387 (609)
Q Consensus 362 LD~~~D~~~Lr~~l~~ire~clr~l~ 387 (609)
...+ + ..+..|.++++
T Consensus 239 ~g~~---------G-~F~~~~~~~~~ 254 (280)
T cd05169 239 SGIE---------G-TFRTTCEDVMN 254 (280)
T ss_pred CCCC---------C-chHHHHHHHHH
Confidence 3322 2 25677777764
No 85
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=70.88 E-value=11 Score=31.94 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=44.4
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCc------EEE-eCCeeeccCCc----CCCCCCeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDES------SLT-FGDLTLNNDLS----AIKKDSALLL 90 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQ------RLI-f~Gk~LeDd~t----~I~~dStLHL 90 (609)
.+|.|....|+.+-+.+-...+|..+...|.+..+.+.... +|. -+|..|.++.+ +|.+|++|+|
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 46788886689999999999999999999999988755432 333 45889988886 9999999987
No 86
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.04 E-value=3.9 Score=47.86 Aligned_cols=60 Identities=28% Similarity=0.421 Sum_probs=44.7
Q ss_pred hhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcccCCCCCcccccCCCCCCCCCHHHHHHHHc
Q 037804 286 HRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPESLEDPYFEWMHWPQASIPFSEDELEYIRN 361 (609)
Q Consensus 286 hkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~~~~d~~f~Wl~WPqA~~PFS~e~l~yI~~ 361 (609)
---+|.=|+|.=.|||.||+|+++ +|+ +..||-|+.|-. ||+. +=| -+-++.+.++++-.
T Consensus 687 aGYsVitYILGvGDRhldNLllT~---dGk-----~FHiDFgyIlGR---DPKP---~pp--~MkL~kemve~mgg 746 (843)
T KOG0906|consen 687 AGYSVITYILGVGDRHLDNLLLTK---DGK-----LFHIDFGYILGR---DPKP---FPP--PMKLAKEMVEGMGG 746 (843)
T ss_pred ccceeeeeeecccCCCcCceEEcc---CCc-----EEEEeeeeeccC---CCCC---CCC--ccccCHHHHHHhcc
Confidence 455688899999999999999999 666 999999999987 6651 011 23345667777644
No 87
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac
Probab=69.51 E-value=6.1 Score=41.13 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=24.1
Q ss_pred hhHhhhcccceEeecCCC----------CCCceEEEec
Q 037804 283 AAIHRIGILDIRIFNTDR----------HAGNLLVRKL 310 (609)
Q Consensus 283 ~evhkIaILDiri~NtDR----------h~GNiLV~~~ 310 (609)
.++-||-+||+.++|.|| |..|||++..
T Consensus 122 ~~LG~ii~lDi~inN~DRlPl~~~~~~GN~~Nil~~~~ 159 (238)
T cd05124 122 IQLGKIIALDIFINNSDRLPLAIWRNSGNFDNIILKDI 159 (238)
T ss_pred HHhhhhheeeeeecCCCCCCccccccCCCcceEEEEcc
Confidence 566799999999999999 6788999874
No 88
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=67.73 E-value=13 Score=42.59 Aligned_cols=93 Identities=26% Similarity=0.290 Sum_probs=61.9
Q ss_pred eEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcccCCCCCcccccCCCCCCCCCHHHHHHHHcCChhhhHHHHH
Q 037804 293 IRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPESLEDPYFEWMHWPQASIPFSEDELEYIRNLNPAHDSEMLR 372 (609)
Q Consensus 293 iri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~~~~d~~f~Wl~WPqA~~PFS~e~l~yI~~LD~~~D~~~Lr 372 (609)
-=.+=+|=|.|||+|.. +|+ ++.+|||+.=+- ++.+++.+ .+.+-.+..-|...-++.+.
T Consensus 284 dgffHaDpHpGNi~v~~---~g~-----i~~lDfGi~g~l---~~~~r~~l---------~~~~~a~~~rD~~~v~~~~~ 343 (517)
T COG0661 284 DGFFHADPHPGNILVRS---DGR-----IVLLDFGIVGRL---DPKFRRYL---------AELLLAFLNRDYDRVAELHV 343 (517)
T ss_pred cCccccCCCccceEEec---CCc-----EEEEcCcceecC---CHHHHHHH---------HHHHHHHHhhCHHHHHHHHH
Confidence 34567999999999998 444 999999998775 44444332 23444456668888888888
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q 037804 373 TELPMIREACLRVLILSTVFLQEAAAFGLCLAEI 406 (609)
Q Consensus 373 ~~l~~ire~clr~l~i~t~lLK~~a~~gLtl~eI 406 (609)
..++.=...+...+......+-.-+ .|..+.+|
T Consensus 344 ~~G~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~ 376 (517)
T COG0661 344 ELGYVPPDTDRDPLAAAIRAVLEPI-YGKPLEEI 376 (517)
T ss_pred HhCCCCCccchHHHHHHHHHHHHhh-hCCChhhc
Confidence 8776444566666665555544332 55666554
No 89
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=63.73 E-value=46 Score=28.18 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=40.5
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEE--eCCeeecc
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLT--FGDLTLNN 77 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLI--f~Gk~LeD 77 (609)
+--+|-||..+|+.+.-....++||++|.+-|....+.....-+|+ |--+.|.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~ 58 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTK 58 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCcc
Confidence 3467999999999999999999999999999966555544444554 33555543
No 90
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=63.20 E-value=5.2 Score=41.02 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=34.7
Q ss_pred hHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 284 AIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 284 evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
+.--.+++=|++.=.|||.+|||+.+. +|+ ++-||=|.+|-.
T Consensus 127 S~A~~S~~~YilglgDRH~~NIli~~~--tG~-----v~HIDfg~~f~~ 168 (235)
T cd05172 127 SLAAMCVSHWILGIGDRHLSNFLVDLE--TGG-----LVGIDFGHAFGT 168 (235)
T ss_pred HHHHHHHHhheeeccCCCcccEEEECC--CCc-----EEEEeeHhhhcc
Confidence 344677788999999999999999863 444 999999999976
No 91
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.18 E-value=3.1 Score=54.88 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=32.7
Q ss_pred HhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCc
Q 037804 285 IHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLP 331 (609)
Q Consensus 285 vhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP 331 (609)
|--=.|+=|++.=.|||+-||||... . .++|.||-|.+|-
T Consensus 2617 vA~sS~VGyILGLGDRH~qNILid~~--t-----aEviHIDlGiAFE 2656 (2806)
T KOG0892|consen 2617 VAASSMVGYILGLGDRHGQNILIDQQ--T-----AEVIHIDLGIAFE 2656 (2806)
T ss_pred HHHHHHHHHHhcccchhhhheeeccc--c-----cceEEEeeeeehh
Confidence 44556788999999999999999763 2 4599999999985
No 92
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=63.10 E-value=4 Score=42.74 Aligned_cols=42 Identities=24% Similarity=0.416 Sum_probs=34.7
Q ss_pred hHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 284 AIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 284 evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
+.--..++=|++.=.|||.+|||+... +|+ ++.||-|.||-.
T Consensus 172 S~A~~s~~~yilglgDRh~~NIll~~~--tG~-----v~hiDf~~~f~~ 213 (279)
T cd05171 172 SVATSSIVGYILGLGDRHANNILIDEK--TAE-----VVHIDLGIAFEQ 213 (279)
T ss_pred HHHHHHHHHHhhccCCCCcccEEEEcC--cCc-----EEEEechhhhcc
Confidence 444677788999999999999999864 444 999999999954
No 93
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=62.55 E-value=5.7 Score=47.87 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=30.8
Q ss_pred cccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 289 GILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 289 aILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
+|--|++.=.|||.+||||+. +|. |..||-|=.|-.
T Consensus 919 cVATyVLGIgDRHsDNIMvke---~Gq-----lFHIDFGHiLGh 954 (1076)
T KOG0904|consen 919 CVATYVLGIGDRHSDNIMVKE---TGQ-----LFHIDFGHILGH 954 (1076)
T ss_pred eeeeeeecccccccCceEEec---cCc-----EEEEEhhhhhcc
Confidence 455689999999999999998 665 999999988765
No 94
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=62.14 E-value=3.3 Score=51.96 Aligned_cols=41 Identities=27% Similarity=0.553 Sum_probs=33.9
Q ss_pred hHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 284 AIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 284 evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
..---+|+-|++.=-|||.||||+.. .|+ ++.||-|+.|-.
T Consensus 1643 S~A~Ysv~s~lLq~KDRHNGNim~Dd---~G~-----~iHIDFGf~~e~ 1683 (1803)
T KOG0902|consen 1643 SMAGYSVLSYLLQIKDRHNGNIMIDD---QGH-----IIHIDFGFMFES 1683 (1803)
T ss_pred HHHHHHHHHHHcccccccCCceeEcc---CCC-----EEEEeeeeEEec
Confidence 34456788899999999999999976 444 999999999865
No 95
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=61.93 E-value=4 Score=41.79 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=33.9
Q ss_pred HhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 285 IHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 285 vhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
.--.+++=|++.=.|||.+|||+... +|+ ++.||=|.+|-.
T Consensus 131 lA~~s~~~YilgigDRh~~NIli~~~--tG~-----~~HIDfg~~~~~ 171 (237)
T cd00892 131 TAVMSMVGYILGLGDRHGENILFDSN--TGD-----VVHVDFNCLFDK 171 (237)
T ss_pred HHHHHHHHHHhccCCCCcccEEEEcC--CCc-----EEEEehHhhhcc
Confidence 34566778889999999999999874 344 999999999976
No 96
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=61.52 E-value=4.9 Score=45.02 Aligned_cols=41 Identities=32% Similarity=0.288 Sum_probs=31.6
Q ss_pred hhhHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEee-cc
Q 037804 282 VAAIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPI-DH 326 (609)
Q Consensus 282 v~evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpI-DH 326 (609)
..++.+..+|.++|.|+|.|+.|+=+-..+ .+.++|.|+ |-
T Consensus 327 ~~~~~rr~~fN~LigN~D~H~KN~Sfl~~~----~~~~~LAPaYDi 368 (442)
T PRK09775 327 AQRAELLWAFGRLIANTDMHAGNLSFVLSD----GRPLALAPVYDM 368 (442)
T ss_pred HHHHHHHHHHhHHhcCCCCCccceEEEECC----CCCeeecchhhc
Confidence 456678899999999999999998777631 245778877 43
No 97
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=61.52 E-value=5.7 Score=45.69 Aligned_cols=39 Identities=38% Similarity=0.621 Sum_probs=32.1
Q ss_pred ccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 290 ILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 290 ILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
||.-=..++|=|+|||||++.+ .+..+++=.|||++---
T Consensus 317 If~~GffHaDPHPGNilv~~~~----~~~~~ivllDhGl~~~i 355 (538)
T KOG1235|consen 317 IFKTGFFHADPHPGNILVRPNP----EGDEEIVLLDHGLYAVI 355 (538)
T ss_pred HHhcCCccCCCCCCcEEEecCC----CCCccEEEEcccccccc
Confidence 5677789999999999999742 35677999999998665
No 98
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=60.78 E-value=15 Score=30.49 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=34.9
Q ss_pred EEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCc--EEEe
Q 037804 30 VQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDES--SLTF 70 (609)
Q Consensus 30 VKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQ--RLIf 70 (609)
|+.++|.+.+++|+++.|+.++=++|.++.||. +.+ .|.|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~-e~~~FgL~~ 42 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLK-EKEYFGLQY 42 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTS-SGGGEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCC-CccEEEEEE
Confidence 678999999999999999999999999999997 333 5666
No 99
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=59.25 E-value=34 Score=30.28 Aligned_cols=36 Identities=14% Similarity=0.396 Sum_probs=33.8
Q ss_pred EEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCC
Q 037804 37 VLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGD 72 (609)
Q Consensus 37 ~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~G 72 (609)
++.|.|-+.-+..+|.++|.+++++|+++-.|-|.+
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 999999999999999999999999998888888884
No 100
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=58.21 E-value=4.9 Score=40.41 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=45.0
Q ss_pred hHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcccCCCCCcccccCCC-CCCCCCHHHHHHHHcC
Q 037804 284 AIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPESLEDPYFEWMHWPQ-ASIPFSEDELEYIRNL 362 (609)
Q Consensus 284 evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~~~~d~~f~Wl~WPq-A~~PFS~e~l~yI~~L 362 (609)
..--..++=|++.=.|||.+|||+... +|+ ++-||=|++|-. .+.+.= |. .-.-++++..+.+...
T Consensus 119 SlA~~s~~~YilglgDRh~~NIli~~~--~G~-----~~hIDfg~~~~~---~~~~~~---~e~vPFRLT~~~~~~~g~~ 185 (219)
T cd00142 119 SLAGYSVAGYILGIGDRHPDNIMIDLD--TGK-----LFHIDFGFIFGK---RKKFLG---RERVPFRLTPDLVNALGTG 185 (219)
T ss_pred HHHHHHHHHHHhccCCCCCccEEEECC--CCe-----EEEEeeHHhhCc---CcCCCC---CCCCCEeccHHHHHHhCCc
Confidence 344677888999999999999999874 343 999999999964 222111 21 2234566666666544
No 101
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=56.76 E-value=29 Score=33.15 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=35.5
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCC
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIP 62 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP 62 (609)
.+.|.|...+|.+..+.++++.||++|-+.|.++.||+
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~ 40 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR 40 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 46788999999999999999999999999999999995
No 102
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=55.16 E-value=47 Score=27.72 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=36.2
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCC
Q 037804 28 VFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGD 72 (609)
Q Consensus 28 IfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~G 72 (609)
|.|+- .|.+..+.|.+..|-.+|+++|+++++++...-.|-|.+
T Consensus 4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 44444 678999999999999999999999999876666777764
No 103
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=53.66 E-value=45 Score=34.50 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=48.0
Q ss_pred EEEeccCCCHHHHHHHHHHHhCCCCCCcEE-EeCC-----eeeccCCc-----CCCCCCeeeeeecccCCCCCCCccCCC
Q 037804 39 GMELDRNDNAHTVKRRLQLALNIPTDESSL-TFGD-----LTLNNDLS-----AIKKDSALLLTRNAMHRSSSSPCLSPV 107 (609)
Q Consensus 39 ~~eVe~sdTV~~VKqkIqekeGIP~eqQRL-If~G-----k~LeDd~t-----~I~~dStLHLvRn~ihRSSstP~~s~~ 107 (609)
.-...++.||..+|.|+....|.+++.-+| +|+| -.|.|+.. ...++-.||++-+.-.+.+.+--.+++
T Consensus 16 Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~~~~~~~~d~s~v 95 (234)
T KOG3206|consen 16 EKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNAQSISNTEDESIV 95 (234)
T ss_pred hhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCccccccccccccc
Confidence 335578999999999999999999999888 6775 35544431 677888999986433333333333443
No 104
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=53.47 E-value=6.4 Score=39.90 Aligned_cols=42 Identities=24% Similarity=0.394 Sum_probs=34.9
Q ss_pred hHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 284 AIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 284 evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
..--.+++=|++.=.|||.+|||+... +|+ ++-||=|.+|-.
T Consensus 122 SlA~~s~~~YvlglgDRh~~NIli~~~--tG~-----v~hIDf~~~~~~ 163 (222)
T cd05164 122 STAVMSIVGYILGLGDRHLDNILIDRE--TGE-----VVHIDFGCIFEK 163 (222)
T ss_pred HHHHHHHHHHHhccCCCCCceEEEECC--CCc-----EEEEccHHhhcc
Confidence 344677888999999999999999884 344 899999999976
No 105
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=53.18 E-value=10 Score=47.21 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=31.3
Q ss_pred hcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 288 IGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 288 IaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
-+|--|++.=+|||.+|||.++ .|+ +..||-|=-+-+
T Consensus 1191 ~cVaTYVLGIcDRHNDNIMl~~---sGH-----mFHIDFGKFLGh 1227 (1639)
T KOG0905|consen 1191 WCVATYVLGICDRHNDNIMLTK---SGH-----MFHIDFGKFLGH 1227 (1639)
T ss_pred ceeeeEeeecccccCCceEEec---cCc-----EEEEehhhhcch
Confidence 4677899999999999999998 555 999999976654
No 106
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=52.64 E-value=18 Score=31.06 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=36.9
Q ss_pred eccCCCHHHHHHHHHHHhCC-CCCCcEEEeCCeeeccCCc-----CCCCCCeeeeee
Q 037804 42 LDRNDNAHTVKRRLQLALNI-PTDESSLTFGDLTLNNDLS-----AIKKDSALLLTR 92 (609)
Q Consensus 42 Ve~sdTV~~VKqkIqekeGI-P~eqQRLIf~Gk~LeDd~t-----~I~~dStLHLvR 92 (609)
|.++++|.+|++-|...... .--.=.|.++|+.|++... +++++++|+|+-
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 56789999999998886321 1112367789999976542 788899999973
No 107
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=51.21 E-value=7.8 Score=41.20 Aligned_cols=63 Identities=21% Similarity=0.402 Sum_probs=43.8
Q ss_pred hHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcccCCCCCcccccCCCCCCCC--CHHHHHHHH
Q 037804 284 AIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPESLEDPYFEWMHWPQASIPF--SEDELEYIR 360 (609)
Q Consensus 284 evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~~~~d~~f~Wl~WPqA~~PF--S~e~l~yI~ 360 (609)
+.--++++=|++.=.|||.+|||+... +|+ ++.||=|.||-... .+..|.. +|| ++...+.+.
T Consensus 200 s~A~~s~~~yilglgDRh~~NIli~~~--tG~-----v~hiDf~~~f~~~~------~l~~pE~-VPFRLT~~~~~~lg 264 (307)
T cd05170 200 STAVMSMIGYVIGLGDRHLDNVLIDLK--TGE-----VVHIDYNVCFEKGK------SLRIPEK-VPFRMTQNIETALG 264 (307)
T ss_pred HHHHHHHHHHHccCCCCCCccEEEEcC--CCc-----EEEEeeHhhhcccC------CCCCCCC-CCeeeCHHHHHHhC
Confidence 445677888999999999999999864 444 99999999995421 1233433 454 555555554
No 108
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=49.66 E-value=95 Score=27.81 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=32.7
Q ss_pred EEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCC
Q 037804 27 RVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTD 64 (609)
Q Consensus 27 qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~e 64 (609)
.|.|-..+|..-++.|+...|+.+|=+.+.++.+...+
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~ 41 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDD 41 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCC
Confidence 46677789999999999999999999999999766544
No 109
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=49.62 E-value=58 Score=27.10 Aligned_cols=55 Identities=13% Similarity=0.305 Sum_probs=40.9
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCcCCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLSAIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t~I~~dStLHLvR 92 (609)
|+|+| +|+.+ +++...|+..||+++.. +.--+|++|-+..+|.. ++++..|.|.+
T Consensus 1 M~I~v---N~k~~--~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~-L~e~D~v~~Ik 55 (57)
T PF14453_consen 1 MKIKV---NEKEI--ETEENTTLFELRKESKP------DADIVILNGFPTKEDIE-LKEGDEVFLIK 55 (57)
T ss_pred CEEEE---CCEEE--EcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCccc-cCCCCEEEEEe
Confidence 45665 66654 45667899999987543 33378999999999877 88888888875
No 110
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=48.14 E-value=1.3e+02 Score=25.79 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=44.4
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeC--CeeeccC---Cc----CCCCCCeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFG--DLTLNND---LS----AIKKDSALLL 90 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~--Gk~LeDd---~t----~I~~dStLHL 90 (609)
-+|-||..+|+.+.-....++||.+|.+-|+...+.+ ..-.|+-. -+.+.++ .+ ++..-++|++
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 5789999999999999999999999999998655433 33455433 5556432 22 4555555544
No 111
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=47.48 E-value=22 Score=42.30 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=38.7
Q ss_pred eCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCe
Q 037804 32 TETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDL 73 (609)
Q Consensus 32 TltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk 73 (609)
+.++..+.+.|+++.|++.++.+|++..|||.+.|.|+|.|.
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~ 362 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGG 362 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecC
Confidence 457888999999999999999999999999999999999864
No 112
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=47.05 E-value=73 Score=26.25 Aligned_cols=54 Identities=9% Similarity=0.071 Sum_probs=38.8
Q ss_pred EEEEEeccCCCHHHHHHHHHHHhCC----CCCCcEEEeCCeeeccCCcCCCCCCeeeee
Q 037804 37 VLGMELDRNDNAHTVKRRLQLALNI----PTDESSLTFGDLTLNNDLSAIKKDSALLLT 91 (609)
Q Consensus 37 ~~~~eVe~sdTV~~VKqkIqekeGI----P~eqQRLIf~Gk~LeDd~t~I~~dStLHLv 91 (609)
...++++...||.+|.+++.++.+- ....-.+..+|+....+ +-+++++.|.++
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~-~~l~~gD~v~i~ 74 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLD-TPLKDGDEVAII 74 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCC-cccCCCCEEEEe
Confidence 4677887789999999999887542 11234556677777644 458899999886
No 113
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=46.70 E-value=1.1e+02 Score=25.54 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=38.7
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeC--Ceeecc
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFG--DLTLNN 77 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~--Gk~LeD 77 (609)
-+|-||..+|+.+.-....++||++|.+=|...... ...-+|+.. -+.+.+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~ 55 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTD 55 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCC
Confidence 368899999999999999999999999988765433 234456543 566654
No 114
>smart00455 RBD Raf-like Ras-binding domain.
Probab=44.63 E-value=67 Score=27.22 Aligned_cols=49 Identities=4% Similarity=-0.037 Sum_probs=40.8
Q ss_pred EEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCC--eeecc
Q 037804 29 FVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGD--LTLNN 77 (609)
Q Consensus 29 fVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~G--k~LeD 77 (609)
.|=..+|+...+.|.++.||.++=++|-++.|+.+++-.+...| +.|.-
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl 53 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDL 53 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceec
Confidence 45568999999999999999999999999999998887887643 45543
No 115
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=43.68 E-value=81 Score=28.85 Aligned_cols=83 Identities=8% Similarity=0.145 Sum_probs=57.4
Q ss_pred CCCCCcccc--ccccccCCeEEEEEe--CCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----
Q 037804 9 PCSGEYHGN--LGAKSSGTRRVFVQT--ETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS---- 80 (609)
Q Consensus 9 ~~~~~~~~~--~~~rlsd~~qIfVKT--ltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t---- 80 (609)
+.++|+..+ .+.+..- ..|..|- -.|.++-|.|..+.+...+-.-...+.|-....-|++|+|+.+.-+.+
T Consensus 5 ~~~~e~kt~~~p~vkp~t-~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dl 83 (103)
T COG5227 5 DSGSEFKTNENPLVKPIT-KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDL 83 (103)
T ss_pred ccchhhccccCccccccc-cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhc
Confidence 345555554 2222222 2344444 488999999999999988877777888887788899999999988776
Q ss_pred CCCCCCeeeeee
Q 037804 81 AIKKDSALLLTR 92 (609)
Q Consensus 81 ~I~~dStLHLvR 92 (609)
+.+++..|-.|+
T Consensus 84 dmEdnd~iEav~ 95 (103)
T COG5227 84 DMEDNDEIEAVT 95 (103)
T ss_pred CCccchHHHHHH
Confidence 555555554443
No 116
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=43.38 E-value=1.4e+02 Score=24.99 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=37.3
Q ss_pred CCc--EEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCcCCCCCCeeeeee
Q 037804 34 TGC--VLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLSAIKKDSALLLTR 92 (609)
Q Consensus 34 tGk--~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t~I~~dStLHLvR 92 (609)
+|+ ...++++...||.++-++ ++++.+.-.+..+|+.+..+ +-+++++.|-++.
T Consensus 10 ng~~~~~~~~~~~~~tv~~ll~~----l~~~~~~v~v~vNg~iv~~~-~~l~~gD~Veii~ 65 (70)
T PRK08364 10 IGRGIEKEIEWRKGMKVADILRA----VGFNTESAIAKVNGKVALED-DPVKDGDYVEVIP 65 (70)
T ss_pred eccccceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECCCC-cCcCCCCEEEEEc
Confidence 666 677888888899888765 47775444555677776443 3488888888764
No 117
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=40.16 E-value=68 Score=26.52 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=31.3
Q ss_pred CCcEEEEEec-cCCCHHHHHHHHHHHhCCCCCCcEEEeCC
Q 037804 34 TGCVLGMELD-RNDNAHTVKRRLQLALNIPTDESSLTFGD 72 (609)
Q Consensus 34 tGk~~~~eVe-~sdTV~~VKqkIqekeGIP~eqQRLIf~G 72 (609)
.|.+..+.+. ++.|..+|+++|.++++++...-.|-|.+
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 3688899998 99999999999999999875344555554
No 118
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=39.16 E-value=1.1e+02 Score=27.08 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=40.6
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeC--Ceee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFG--DLTL 75 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~--Gk~L 75 (609)
-+|-||..+|+.+.-....++++..|-.=|+. .|.+++.-.|+-+ =+.+
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~ 56 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKL 56 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCccc
Confidence 47999999999999999999999999887777 6777788888744 4444
No 119
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=38.94 E-value=28 Score=35.12 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=22.7
Q ss_pred CCcEEEEEeccCCCHHHHHHHHHHHhCCCCC
Q 037804 34 TGCVLGMELDRNDNAHTVKRRLQLALNIPTD 64 (609)
Q Consensus 34 tGk~~~~eVe~sdTV~~VKqkIqekeGIP~e 64 (609)
-|-.|.|-|.++.|..++|+||++++|++..
T Consensus 131 hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 131 HGIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp EEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred CCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 3667889999999999999999999999843
No 120
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=38.38 E-value=81 Score=27.60 Aligned_cols=34 Identities=9% Similarity=0.045 Sum_probs=29.4
Q ss_pred EEEe-CCCcEEEEEeccCCCHHHHHHHHHHHhCCC
Q 037804 29 FVQT-ETGCVLGMELDRNDNAHTVKRRLQLALNIP 62 (609)
Q Consensus 29 fVKT-ltGk~~~~eVe~sdTV~~VKqkIqekeGIP 62 (609)
.||. ..|.++.|.+.++.+...|+++|++++++.
T Consensus 2 ~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~ 36 (82)
T cd06407 2 RVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLD 36 (82)
T ss_pred EEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4553 367789999999999999999999999986
No 121
>PRK06437 hypothetical protein; Provisional
Probab=38.15 E-value=1.8e+02 Score=24.28 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=41.6
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCcCCCCCCeeeeee
Q 037804 28 VFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLSAIKKDSALLLTR 92 (609)
Q Consensus 28 IfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t~I~~dStLHLvR 92 (609)
|+|. .++.-.++++...||.+|= +.+|++++.--+..+|+.+..+. -++++..|-+++
T Consensus 5 ~~v~--g~~~~~~~i~~~~tv~dLL----~~Lgi~~~~vaV~vNg~iv~~~~-~L~dgD~Veiv~ 62 (67)
T PRK06437 5 IRVK--GHINKTIEIDHELTVNDII----KDLGLDEEEYVVIVNGSPVLEDH-NVKKEDDVLILE 62 (67)
T ss_pred EEec--CCcceEEEcCCCCcHHHHH----HHcCCCCccEEEEECCEECCCce-EcCCCCEEEEEe
Confidence 4554 5677888888888887664 34788876666678888887443 488888888764
No 122
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=37.51 E-value=1.5e+02 Score=26.99 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=45.5
Q ss_pred eEEEEEeCC-CcEEEEEeccCCCHHHHHHHHHHH----hCC--CCC---------CcEEEeCCeeeccCCc---CCCCCC
Q 037804 26 RRVFVQTET-GCVLGMELDRNDNAHTVKRRLQLA----LNI--PTD---------ESSLTFGDLTLNNDLS---AIKKDS 86 (609)
Q Consensus 26 ~qIfVKTlt-Gk~~~~eVe~sdTV~~VKqkIqek----eGI--P~e---------qQRLIf~Gk~LeDd~t---~I~~dS 86 (609)
+.|.|.... -..+++.|+.++|+..|.+.+-.+ .+. +++ ....++++..|.+-.. ++..+.
T Consensus 18 i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~ 97 (108)
T smart00144 18 ILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGR 97 (108)
T ss_pred EEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCC
Confidence 456666544 346999999999999998877665 221 221 2345566777777653 688899
Q ss_pred eeeee
Q 037804 87 ALLLT 91 (609)
Q Consensus 87 tLHLv 91 (609)
++||+
T Consensus 98 ~~~L~ 102 (108)
T smart00144 98 EPHLV 102 (108)
T ss_pred CceEE
Confidence 99995
No 123
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=35.42 E-value=2.9e+02 Score=24.20 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeC--Ceeec
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFG--DLTLN 76 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~--Gk~Le 76 (609)
|-.+|-||..+|+.+.-....++||++|..=|.. .+..++.-+|+.+ =+.+.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~ 56 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLP 56 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCcccc
Confidence 3468999999999999999999999999999864 4445567788766 25564
No 124
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=34.21 E-value=19 Score=37.38 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=31.9
Q ss_pred EEEeecccccCcccCCCCC--------cccccCC-CCCCCCCHHHHHHHHcCC
Q 037804 320 ELIPIDHGLCLPESLEDPY--------FEWMHWP-QASIPFSEDELEYIRNLN 363 (609)
Q Consensus 320 ~LvpIDHGLcfP~~~~d~~--------f~Wl~WP-qA~~PFS~e~l~yI~~LD 363 (609)
--++|.||+.+|+.+...+ +.|..=. .+|.||++..+..+..|.
T Consensus 106 a~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~ 158 (230)
T PHA02537 106 AEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLT 158 (230)
T ss_pred HHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 3589999999999877544 4565544 358999988777765553
No 125
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=32.80 E-value=22 Score=36.83 Aligned_cols=42 Identities=7% Similarity=0.167 Sum_probs=33.7
Q ss_pred hHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 284 AIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 284 evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
+.--+.++=|++.=.|||.+|||+... .|+ ++.||-|.+|-.
T Consensus 145 s~A~~s~~gYilglgdRh~~nili~~~--tG~-----v~hiDf~~~f~~ 186 (253)
T cd05163 145 QLALLSFMTYILSINNRNPDKIFISRD--TGN-----VYQSDLLPSINN 186 (253)
T ss_pred HHHHHHHHHHHhcCCCCCchhEEEEcC--CCc-----EEEEeeeeeecC
Confidence 344677788999999999999999874 344 899999988743
No 126
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=32.03 E-value=81 Score=28.38 Aligned_cols=41 Identities=7% Similarity=0.122 Sum_probs=34.9
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEE
Q 037804 28 VFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSL 68 (609)
Q Consensus 28 IfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRL 68 (609)
|-|--.+|.++.+.|..++|...|=+.++.+.|+|.+-+..
T Consensus 4 L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~Y 44 (87)
T cd01777 4 LRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNY 44 (87)
T ss_pred EEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhh
Confidence 34444789999999999999999999999999999776544
No 127
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=31.53 E-value=72 Score=28.44 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=43.4
Q ss_pred eEEEEEeC-CCcEEEEEeccCCCHHHHHHHHHHH----hCCCC----------CCcEEEeCCeeeccCCc---CCCCCCe
Q 037804 26 RRVFVQTE-TGCVLGMELDRNDNAHTVKRRLQLA----LNIPT----------DESSLTFGDLTLNNDLS---AIKKDSA 87 (609)
Q Consensus 26 ~qIfVKTl-tGk~~~~eVe~sdTV~~VKqkIqek----eGIP~----------eqQRLIf~Gk~LeDd~t---~I~~dSt 87 (609)
+.|.|... ....++|.|+.+.|+..|-+++-.+ .+.+. ..+..++++..|.+-.. ++..+-.
T Consensus 17 i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~ 96 (106)
T PF00794_consen 17 IKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKD 96 (106)
T ss_dssp EEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--
T ss_pred EEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCC
Confidence 67788887 6778999999999999998887666 22221 24456667777776653 5777778
Q ss_pred eeee
Q 037804 88 LLLT 91 (609)
Q Consensus 88 LHLv 91 (609)
+||+
T Consensus 97 ~~L~ 100 (106)
T PF00794_consen 97 PHLV 100 (106)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 8884
No 128
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=31.38 E-value=1.1e+02 Score=26.22 Aligned_cols=44 Identities=7% Similarity=-0.069 Sum_probs=38.4
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeC
Q 037804 28 VFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFG 71 (609)
Q Consensus 28 IfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~ 71 (609)
+.|-..+|..-.+.|.++.||.++=.++-++-|+.++.-.|.+.
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~ 45 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLL 45 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEe
Confidence 44567899999999999999999999999999999888777654
No 129
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=31.05 E-value=1.3e+02 Score=26.01 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=39.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCC-CCCcEEE--eCCeeeccC
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIP-TDESSLT--FGDLTLNND 78 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP-~eqQRLI--f~Gk~LeDd 78 (609)
-+|-||..+|+.+...+..++||++|.+=|....+.+ ...-.|+ |=.+.|.|+
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~ 60 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDE 60 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCC
Confidence 5788999999999999999999999999888764322 1233454 336666554
No 130
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=30.56 E-value=1.2e+02 Score=24.64 Aligned_cols=56 Identities=11% Similarity=0.149 Sum_probs=38.8
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEE---EeCCeeeccCCcCCCCCCeeeee
Q 037804 28 VFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSL---TFGDLTLNNDLSAIKKDSALLLT 91 (609)
Q Consensus 28 IfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRL---If~Gk~LeDd~t~I~~dStLHLv 91 (609)
|.|.|..|+... ++...|+.++=+.|....+ ++. ..+|+...-+. -++++++|.++
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~-----~~~~~A~Vng~~vdl~~-~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLA-----KRAVAAKVNGQLVDLDH-PLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHH-----HCEEEEEETTEEEETTS-BB-SSEEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHH-----hheeEEEEcCEECCCCC-CcCCCCEEEEE
Confidence 678889999987 6688899999999987763 222 34575554443 37788887664
No 131
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=30.47 E-value=1e+02 Score=32.94 Aligned_cols=64 Identities=9% Similarity=0.170 Sum_probs=39.5
Q ss_pred EEEEEeCCC-cEEE-EEeccCCCHHHHHHHHHHH-hCCCCCCcEEEeC----CeeeccCCc----CCCCCCeeee
Q 037804 27 RVFVQTETG-CVLG-MELDRNDNAHTVKRRLQLA-LNIPTDESSLTFG----DLTLNNDLS----AIKKDSALLL 90 (609)
Q Consensus 27 qIfVKTltG-k~~~-~eVe~sdTV~~VKqkIqek-eGIP~eqQRLIf~----Gk~LeDd~t----~I~~dStLHL 90 (609)
.|++.+-++ -.++ .+...+.||.+++.+|..+ ..+.+-.||+.+. |+.|.|+.+ +..+++||.+
T Consensus 2 ~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 2 EITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred ceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 455555444 2333 4556678999999766554 6777655655544 888888764 4555555544
No 132
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=30.01 E-value=38 Score=35.51 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=25.3
Q ss_pred ccCCCHHHHHHHHHHHHHhcHHHHHhhh
Q 037804 564 LTDMNEEEWLLFLEKFKELLHPALAKQR 591 (609)
Q Consensus 564 ~~~~~~~~w~~fl~~f~~ll~~~~~~~k 591 (609)
|..+++++|..||..|.++|..||-.++
T Consensus 211 L~~L~e~~~~~FL~~Y~~~l~~aYP~~~ 238 (257)
T COG4106 211 LDRLDEEERQRFLDRYLALLAEAYPPRA 238 (257)
T ss_pred ccccCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 6889999999999999999999996663
No 133
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=29.26 E-value=1.3e+02 Score=26.60 Aligned_cols=46 Identities=11% Similarity=0.126 Sum_probs=35.1
Q ss_pred EEEE-eCCCcEEEEEecc--CCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCC
Q 037804 28 VFVQ-TETGCVLGMELDR--NDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDL 79 (609)
Q Consensus 28 IfVK-TltGk~~~~eVe~--sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~ 79 (609)
|.|| |-.|.++.|.+.+ .-+-.+|++.|+++++++ -|.=+-|+|+.
T Consensus 1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~------~f~lKYlDde~ 49 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN------DIQIKYVDEEN 49 (81)
T ss_pred CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC------cceeEEEcCCC
Confidence 3455 3478899999999 558999999999999998 34555665543
No 134
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=28.62 E-value=47 Score=39.71 Aligned_cols=45 Identities=27% Similarity=0.761 Sum_probs=32.2
Q ss_pred hhhHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeeccccc--CcccCCCCCc
Q 037804 282 VAAIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLC--LPESLEDPYF 339 (609)
Q Consensus 282 v~evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLc--fP~~~~d~~f 339 (609)
++.||||+.+- -|=+.+||||.. + |+++| -|-||| |-|.|..-||
T Consensus 742 iesVHkmGFIH-----RDiKPDNILIDr---d---GHIKL--TDFGLCTGfRWTHdskYY 788 (1034)
T KOG0608|consen 742 IESVHKMGFIH-----RDIKPDNILIDR---D---GHIKL--TDFGLCTGFRWTHDSKYY 788 (1034)
T ss_pred HHHHHhcccee-----cccCccceEEcc---C---Cceee--eeccccccceeccccccc
Confidence 57899999653 577999999976 4 44555 599999 4566654333
No 135
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=28.57 E-value=1.7e+02 Score=24.60 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=40.5
Q ss_pred eEEEEEe------CCC-cEEEEEeccCCCHHHHHHHHHHHhC-CCCC-Cc-EEEeCCeeeccCCcCCCCCCeeeee
Q 037804 26 RRVFVQT------ETG-CVLGMELDRNDNAHTVKRRLQLALN-IPTD-ES-SLTFGDLTLNNDLSAIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKT------ltG-k~~~~eVe~sdTV~~VKqkIqekeG-IP~e-qQ-RLIf~Gk~LeDd~t~I~~dStLHLv 91 (609)
|.|.||- ..| ....+++....||++|++.|..+.. +... .. .+..+|+...+ .+-++++++|-++
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~-~~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTE-SAALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCC-CcCcCCCCEEEEe
Confidence 4555553 245 5677888888999999999977641 1100 11 24456665543 3458888888775
No 136
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=26.97 E-value=99 Score=27.81 Aligned_cols=57 Identities=25% Similarity=0.462 Sum_probs=35.4
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEE--eC--Ce-eeccC-Cc----CCCCCCeeee-eec
Q 037804 36 CVLGMELDRNDNAHTVKRRLQLALNIPTDESSLT--FG--DL-TLNND-LS----AIKKDSALLL-TRN 93 (609)
Q Consensus 36 k~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLI--f~--Gk-~LeDd-~t----~I~~dStLHL-vRn 93 (609)
..++-.+...|||+.|+..+.+.+.| .++-||- |. +. .|.+. .| ++.+|-+|-| .|+
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 36778889999999999999999999 5778993 22 22 34443 23 6777777777 553
No 137
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=25.70 E-value=1.4e+02 Score=26.96 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=37.4
Q ss_pred EEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeee
Q 037804 37 VLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLL 90 (609)
Q Consensus 37 ~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHL 90 (609)
.+..+++=...+.++|..++.+.|+....-.+..-+.+|+.+.+ |++.+.++.+
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQl 61 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQL 61 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEE
Confidence 45667777789999999999999999888888888988998885 7988888888
No 138
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=25.32 E-value=2e+02 Score=23.90 Aligned_cols=44 Identities=11% Similarity=0.267 Sum_probs=33.5
Q ss_pred EEEeC-CCcEEE-EEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCC
Q 037804 29 FVQTE-TGCVLG-MELDRNDNAHTVKRRLQLALNIPTDESSLTFGD 72 (609)
Q Consensus 29 fVKTl-tGk~~~-~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~G 72 (609)
.||.. .|.+.. +.+.+..|...|+++|+++++++...-.|-|.+
T Consensus 3 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 3 RVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 34433 344444 799999999999999999999986667787763
No 139
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=24.92 E-value=3.2e+02 Score=23.04 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=26.2
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHhCCC
Q 037804 35 GCVLGMELDRNDNAHTVKRRLQLALNIP 62 (609)
Q Consensus 35 Gk~~~~eVe~sdTV~~VKqkIqekeGIP 62 (609)
|...++.|.+++|+.+|=+.+.+++++.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~ 39 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLD 39 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 6778999999999999999999999997
No 140
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=24.80 E-value=3e+02 Score=31.51 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=14.3
Q ss_pred cchhhcCCCccccccccCCCHH
Q 037804 549 RSAEELLPTTTSFVKLTDMNEE 570 (609)
Q Consensus 549 ~~~~~~~~~~~~f~~~~~~~~~ 570 (609)
|...-.||-|+-||- .-++|+
T Consensus 183 Rp~tP~LPDSTDFVC-GTLDED 203 (458)
T PF10446_consen 183 RPGTPELPDSTDFVC-GTLDED 203 (458)
T ss_pred CCCCCCCCCcccccC-CCcCCc
Confidence 455566999999985 345544
No 141
>PF15463 ECM11: Extracellular mutant protein 11
Probab=23.84 E-value=77 Score=30.10 Aligned_cols=28 Identities=32% Similarity=0.705 Sum_probs=24.1
Q ss_pred ccCCCHHHHH----HHHHHHHHhcHHHHHhhh
Q 037804 564 LTDMNEEEWL----LFLEKFKELLHPALAKQR 591 (609)
Q Consensus 564 ~~~~~~~~w~----~fl~~f~~ll~~~~~~~k 591 (609)
++.||-++|. -|+++|.+|+...-..|+
T Consensus 66 fs~ls~~eWe~~Gd~~l~qf~~l~~kl~~~R~ 97 (139)
T PF15463_consen 66 FSNLSFDEWEEAGDWFLEQFSELMQKLKEARR 97 (139)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999997 599999999998887775
No 142
>PRK12540 RNA polymerase sigma factor; Provisional
Probab=23.35 E-value=2.5e+02 Score=27.09 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=40.2
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHHHHCCCCHHHHHHhhhhccccCCCCCChHHHHHHHHHHHHHHh
Q 037804 370 MLRTELPMIREACLRVLILSTVFLQEAAAFGLCLAEIGEMMTREFRSEDEKPSELEIVCLEARRIIAER 438 (609)
Q Consensus 370 ~Lr~~l~~ire~clr~l~i~t~lLK~~a~~gLtl~eIg~~m~R~~~~~~~~pS~lE~~~~~a~~~~~~~ 438 (609)
.|+..+-.|++.|-+++.+. .-.|++..|||.+|--. ++.+...+..|++.+.+.
T Consensus 104 ~l~~~l~~Lp~~~R~v~~L~-------~~~g~s~~EIA~~Lgis-------~~tV~~~l~RAr~~Lr~~ 158 (182)
T PRK12540 104 EFRAALDKLPQDQREALILV-------GASGFSYEDAAAICGCA-------VGTIKSRVNRARSKLSAL 158 (182)
T ss_pred HHHHHHHhCCHHHHHHhhHH-------HHcCCCHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHH
Confidence 35555555678887766432 25799999999998654 378889999999988543
No 143
>PRK04171 ribosome biogenesis protein; Provisional
Probab=23.20 E-value=1.3e+02 Score=31.30 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=32.3
Q ss_pred ccCCeEEEEEeCCCcEEEEE--eccCCCHHHHH---HHHHHHhCCCCCCcEEE
Q 037804 22 SSGTRRVFVQTETGCVLGME--LDRNDNAHTVK---RRLQLALNIPTDESSLT 69 (609)
Q Consensus 22 lsd~~qIfVKTltGk~~~~e--Ve~sdTV~~VK---qkIqekeGIP~eqQRLI 69 (609)
-.|.+||+|+|.+|+.|.+. +..-+|-.... .|+-.+.-||++.+.|+
T Consensus 78 k~G~L~VYIhT~~~~lI~V~P~~RiPR~y~rF~gLM~qLL~k~~I~~~~~~Ll 130 (222)
T PRK04171 78 KEGKLRVYIHTRDDKVIYVNPETRLPKNYNRFVGLMEQLLKEGRVPPNGEPLL 130 (222)
T ss_pred hcCCeEEEEEecCCEEEEECCCCcCCCCHHHHHHHHHHHHHhCccCCCCcchh
Confidence 56778999999999988773 33344555444 45555677877655554
No 144
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=22.91 E-value=3.1e+02 Score=24.87 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=37.4
Q ss_pred cccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEe
Q 037804 21 KSSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTF 70 (609)
Q Consensus 21 rlsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf 70 (609)
|..|+. ++-..|.+-.+.|+++.+-.++++++.+..+++.. ..|=|
T Consensus 11 r~~dg~---l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 11 RPPDGQ---LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred cCCCCC---EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 455555 57789999999999999999999999999998854 44433
No 145
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=22.26 E-value=4.3e+02 Score=22.15 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=37.6
Q ss_pred CCcE-EEEEeccC-CCHHHHHHHHHHHhCCCCC---CcEEEeCCeeeccCCcCCCCCCeeeee
Q 037804 34 TGCV-LGMELDRN-DNAHTVKRRLQLALNIPTD---ESSLTFGDLTLNNDLSAIKKDSALLLT 91 (609)
Q Consensus 34 tGk~-~~~eVe~s-dTV~~VKqkIqekeGIP~e---qQRLIf~Gk~LeDd~t~I~~dStLHLv 91 (609)
.|+. ..+++... .||.+|++.|.++..--.+ ..++..+++...++ +-++++++|.++
T Consensus 13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~-~~l~dgDevai~ 74 (80)
T TIGR01682 13 AGTDEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDD-ALLNEGDEVAFI 74 (80)
T ss_pred hCCCeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCC-cCcCCCCEEEEe
Confidence 4553 57888876 8999999999888631011 12444566665543 448888888775
No 146
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=21.89 E-value=46 Score=44.32 Aligned_cols=83 Identities=23% Similarity=0.406 Sum_probs=53.2
Q ss_pred hhHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcccCCCCCcccccCCC-CCCCCCHHHHHHHHc
Q 037804 283 AAIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPESLEDPYFEWMHWPQ-ASIPFSEDELEYIRN 361 (609)
Q Consensus 283 ~evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~~~~d~~f~Wl~WPq-A~~PFS~e~l~yI~~ 361 (609)
...-.+.|..|++.=-|||+||||+.+. +| +++-||=|.||=.. |.. .|. ...||-= |.+++..
T Consensus 1932 ~SlA~ySvigYiLglgDRH~~NIliD~~--sG-----~viHiDFg~il~~~---p~~----~~~pE~vPFrL-T~~iv~~ 1996 (2105)
T COG5032 1932 RSLAVYSVIGYILGLGDRHPGNILIDRS--SG-----HVIHIDFGFILFNA---PGR----FPFPEKVPFRL-TRNIVEA 1996 (2105)
T ss_pred HHHHHHHHHHHHccCCCcCCceEEEEcC--CC-----cEEEehHHHHHhcC---CCC----CCCcccCcHhh-hHHHHHh
Confidence 4556889999999999999999999873 33 49999999988762 211 222 5667632 3344444
Q ss_pred CChhhhHHHHHhcCCCchHHHHHHHH
Q 037804 362 LNPAHDSEMLRTELPMIREACLRVLI 387 (609)
Q Consensus 362 LD~~~D~~~Lr~~l~~ire~clr~l~ 387 (609)
+...-+--. .|+-|.++++
T Consensus 1997 mg~~g~EG~-------Fr~~c~~~~~ 2015 (2105)
T COG5032 1997 MGVSGVEGS-------FRELCETAFR 2015 (2105)
T ss_pred cCccchhhH-------HHHHHHHHHH
Confidence 433222111 5666777664
No 147
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=21.87 E-value=1.7e+02 Score=25.87 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=32.8
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeC
Q 037804 36 CVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFG 71 (609)
Q Consensus 36 k~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~ 71 (609)
-|+.|.|.+......|..+|++++..+++.-.|-|.
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 467889999999999999999999999988888887
No 148
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=21.83 E-value=1.4e+02 Score=27.46 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=29.8
Q ss_pred EEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCC
Q 037804 27 RVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPT 63 (609)
Q Consensus 27 qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~ 63 (609)
.|+|=..+|.+-+|+|.-..|...||.++-+|+|++.
T Consensus 2 vi~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 2 VIRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 3778888999999999999999999999999999985
No 149
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=21.19 E-value=2.3e+02 Score=25.37 Aligned_cols=60 Identities=7% Similarity=0.123 Sum_probs=43.6
Q ss_pred EEEEEeC-CCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCcCCCCCCeeee
Q 037804 27 RVFVQTE-TGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLSAIKKDSALLL 90 (609)
Q Consensus 27 qIfVKTl-tGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t~I~~dStLHL 90 (609)
.|.||.. .|.++.+.|.++-+-.++..+|.+++++. ..=.|-|.+- +|.+.+.++.-|.+
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE---GD~iti~sq~DLd~ 62 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD---GDMITMGDQDDLDM 62 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC---CCCccccCHHHHHH
Confidence 4667766 69999999999999999999999999985 2224445554 44444655555555
No 150
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=21.08 E-value=54 Score=37.88 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=28.5
Q ss_pred ccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCc
Q 037804 290 ILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLP 331 (609)
Q Consensus 290 ILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP 331 (609)
||.--+.-+|=|.|||||.. +|. +..+++-||.|++--
T Consensus 276 if~~GffHaDpHPGNIlv~~---~g~-~~~~i~llDFGivg~ 313 (537)
T PRK04750 276 VFRDGFFHADMHPGNIFVSY---DPP-ENPRYIALDFGIVGS 313 (537)
T ss_pred HHhCCeeeCCCChHHeEEec---CCC-CCCeEEEEecceEEE
Confidence 45667899999999999987 321 123588899999754
No 151
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=20.24 E-value=1.2e+02 Score=24.20 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=16.4
Q ss_pred HHHHHHHHCCCCHHHHHHhhh
Q 037804 391 VFLQEAAAFGLCLAEIGEMMT 411 (609)
Q Consensus 391 ~lLK~~a~~gLtl~eIg~~m~ 411 (609)
.|++.+-+.|+||.||..++.
T Consensus 5 ~~I~~~r~lGfsL~eI~~~l~ 25 (65)
T PF09278_consen 5 QFIRRLRELGFSLEEIRELLE 25 (65)
T ss_dssp HHHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHh
Confidence 467888899999999999993
Done!