Query 037804
Match_columns 609
No_of_seqs 303 out of 659
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 07:10:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3plu_A Ubiquitin-like modifier 99.7 3.5E-17 1.2E-21 142.8 9.2 71 21-91 17-91 (93)
2 3phx_B Ubiquitin-like protein 99.6 5.3E-16 1.8E-20 127.6 9.8 70 23-92 2-75 (79)
3 1uh6_A Ubiquitin-like 5; beta- 99.6 2.8E-16 9.7E-21 138.6 8.5 67 26-92 29-99 (100)
4 4dwf_A HLA-B-associated transc 99.6 1.9E-15 6.3E-20 127.4 9.2 68 24-92 4-75 (90)
5 2kk8_A Uncharacterized protein 99.6 2.6E-15 8.9E-20 127.0 9.5 69 24-92 9-82 (84)
6 2faz_A Ubiquitin-like containi 99.6 3.2E-15 1.1E-19 122.4 9.2 69 24-92 1-75 (78)
7 2lxa_A Ubiquitin-like protein 99.6 1.1E-15 3.7E-20 131.1 6.3 66 26-91 2-75 (87)
8 4fbj_B NEDD8; effector-HOST ta 99.6 3.9E-15 1.3E-19 126.1 9.3 66 26-91 1-70 (88)
9 2wyq_A HHR23A, UV excision rep 99.6 7E-15 2.4E-19 122.0 10.1 70 23-92 3-79 (85)
10 2uyz_B Small ubiquitin-related 99.6 4.2E-15 1.4E-19 122.2 8.6 68 25-92 3-74 (79)
11 4eew_A Large proline-rich prot 99.6 5.8E-15 2E-19 123.9 9.2 71 21-92 13-87 (88)
12 1wyw_B Ubiquitin-like protein 99.6 6.1E-15 2.1E-19 127.3 9.1 71 22-92 18-92 (97)
13 3v6c_B Ubiquitin; structural g 99.6 9.9E-15 3.4E-19 123.8 10.0 70 22-91 14-87 (91)
14 3dbh_I NEDD8; cell cycle, acti 99.5 1.4E-14 4.7E-19 120.7 9.3 69 23-91 10-82 (88)
15 1uel_A HHR23B, UV excision rep 99.5 2.3E-14 7.8E-19 123.0 10.8 67 26-92 1-74 (95)
16 2hj8_A Interferon-induced 17 k 99.5 1E-14 3.5E-19 123.3 8.5 68 25-92 4-75 (88)
17 1ndd_A NEDD8, protein (ubiquit 99.5 2.1E-14 7.3E-19 115.6 9.2 67 26-92 1-71 (76)
18 4a20_A Ubiquitin-like protein 99.5 1.1E-14 3.8E-19 127.4 8.0 71 22-92 16-94 (98)
19 1wy8_A NP95-like ring finger p 99.5 3.2E-14 1.1E-18 119.4 10.4 69 24-92 6-80 (89)
20 3m62_B UV excision repair prot 99.5 1.1E-14 3.8E-19 127.9 7.6 67 26-92 2-72 (106)
21 1sif_A Ubiquitin; hydrophobic 99.5 2.6E-14 8.9E-19 121.0 9.3 68 25-92 9-80 (88)
22 1wh3_A 59 kDa 2'-5'-oligoadeny 99.5 3.7E-14 1.3E-18 118.3 9.7 69 24-92 6-78 (87)
23 3k9o_B Ubiquitin, UBB+1; E2-25 99.5 4.1E-14 1.4E-18 120.3 9.8 67 25-91 1-71 (96)
24 2dzi_A Ubiquitin-like protein 99.5 5.8E-14 2E-18 115.0 10.0 69 24-92 6-78 (81)
25 2bwf_A Ubiquitin-like protein 99.5 5.6E-14 1.9E-18 114.1 9.8 66 26-92 5-74 (77)
26 4hcn_B Polyubiquitin, ubiquiti 99.5 3.3E-14 1.1E-18 122.7 8.7 68 25-92 22-93 (98)
27 2kan_A Uncharacterized protein 99.5 4.8E-14 1.7E-18 121.5 9.8 70 22-92 12-86 (94)
28 3n3k_B Ubiquitin; hydrolase, p 99.5 3.3E-14 1.1E-18 117.4 8.3 68 25-92 3-74 (85)
29 3rt3_B Ubiquitin-like protein 99.5 4.6E-14 1.6E-18 130.2 10.0 74 18-91 73-151 (159)
30 3mtn_B UBA80, ubcep1, ubiquiti 99.5 6.2E-14 2.1E-18 115.6 9.6 68 25-92 3-74 (85)
31 3a9j_A Ubiquitin; protein comp 99.5 6.6E-14 2.2E-18 112.7 9.2 67 26-92 1-71 (76)
32 1wgh_A Ubiquitin-like 3, HCG-1 99.5 5.1E-14 1.7E-18 127.1 9.4 71 22-92 13-97 (116)
33 2fnj_B Transcription elongatio 99.5 3.3E-14 1.1E-18 128.8 7.9 67 26-92 1-79 (118)
34 1ttn_A DC-UBP, dendritic cell- 99.5 7.9E-14 2.7E-18 122.2 9.6 70 23-92 21-94 (106)
35 1v2y_A 3300001G02RIK protein; 99.5 3.8E-14 1.3E-18 125.9 7.3 67 26-92 8-94 (105)
36 2l7r_A Ubiquitin-like protein 99.5 7.5E-14 2.6E-18 119.7 8.9 72 19-92 13-88 (93)
37 2kdb_A Homocysteine-responsive 99.5 5.3E-14 1.8E-18 123.3 7.7 69 23-91 21-99 (99)
38 1se9_A Ubiquitin family; ubiqu 99.5 5.9E-14 2E-18 128.5 8.1 75 18-92 9-101 (126)
39 1wgd_A Homocysteine-responsive 99.5 9.8E-14 3.3E-18 118.3 8.9 69 24-92 6-84 (93)
40 2xzm_9 RPS31E; ribosome, trans 99.5 6.1E-15 2.1E-19 143.2 1.4 65 26-91 1-65 (189)
41 3u30_A Ubiquitin, linear DI-ub 99.5 9.4E-14 3.2E-18 130.2 9.3 74 18-91 89-166 (172)
42 3b1l_X E3 ubiquitin-protein li 99.2 4.5E-15 1.5E-19 120.7 0.0 66 26-91 1-70 (76)
43 3l0w_B Monoubiquitinated proli 99.5 1.2E-13 4E-18 131.1 9.7 67 26-92 1-71 (169)
44 3vdz_A Ubiquitin-40S ribosomal 99.5 1.7E-13 6E-18 121.2 9.6 68 25-92 35-106 (111)
45 1wju_A NEDD8 ultimate buster-1 99.5 1.8E-13 6E-18 120.8 9.3 72 21-92 11-90 (100)
46 1wx8_A Riken cDNA 4931431F19; 99.5 1.8E-13 6.3E-18 116.8 9.1 69 23-92 15-87 (96)
47 1yx5_B Ubiquitin; proteasome, 99.4 2E-13 6.8E-18 117.2 9.3 67 26-92 1-71 (98)
48 2klc_A Ubiquilin-1; ubiquitin- 99.4 4.6E-13 1.6E-17 116.6 11.1 69 23-92 23-95 (101)
49 3u30_A Ubiquitin, linear DI-ub 99.4 2.3E-13 7.9E-18 127.6 9.7 69 24-92 19-91 (172)
50 4dbg_A Ranbp-type and C3HC4-ty 99.4 2.8E-13 9.7E-18 120.5 9.6 66 26-91 25-97 (105)
51 4ajy_B Transcription elongatio 99.4 1.5E-13 5E-18 124.7 7.8 66 26-91 1-78 (118)
52 1yqb_A Ubiquilin 3; structural 99.4 3.4E-13 1.2E-17 117.4 9.9 70 22-92 19-92 (100)
53 2gow_A HCG-1 protein, ubiquiti 99.4 1.5E-13 5.3E-18 125.3 7.5 70 23-92 15-98 (125)
54 1v5o_A 1700011N24RIK protein; 99.4 5.2E-13 1.8E-17 116.2 10.5 69 24-92 6-83 (102)
55 2kdi_A Ubiquitin, vacuolar pro 99.4 4E-13 1.4E-17 119.6 9.6 70 23-92 7-80 (114)
56 1wx7_A Ubiquilin 3; ubiquitin- 99.4 8.8E-13 3E-17 115.2 11.0 69 23-92 15-87 (106)
57 3q3f_A Ribonuclease/ubiquitin 99.4 3.1E-13 1.1E-17 131.1 8.9 66 26-91 106-175 (189)
58 3rt3_B Ubiquitin-like protein 99.4 4.4E-13 1.5E-17 123.6 9.1 67 26-92 3-75 (159)
59 3m63_B Ubiquitin domain-contai 99.4 1.2E-13 4.2E-18 120.6 5.0 74 18-92 19-98 (101)
60 1we6_A Splicing factor, putati 99.4 5.8E-13 2E-17 117.4 9.1 70 22-91 24-101 (111)
61 1j8c_A Ubiquitin-like protein 99.4 1E-12 3.4E-17 119.2 10.2 69 23-92 30-102 (125)
62 2dzm_A FAS-associated factor 1 99.4 1E-12 3.5E-17 115.6 9.9 67 25-92 8-80 (100)
63 2ojr_A Ubiquitin; lanthide-bin 99.4 2E-12 6.7E-17 114.2 11.7 69 24-92 34-106 (111)
64 1wia_A Hypothetical ubiquitin- 99.4 7.4E-13 2.5E-17 113.1 8.6 66 24-92 6-76 (95)
65 3b08_A Polyubiquitin-C, ubiqui 99.4 1.2E-12 3.9E-17 118.5 9.9 75 18-92 69-147 (152)
66 3u5e_m 60S ribosomal protein L 99.4 4.3E-14 1.5E-18 127.8 0.0 66 26-91 1-70 (128)
67 1wgg_A Ubiquitin carboxyl-term 99.3 2.8E-12 9.4E-17 111.1 9.8 67 24-92 6-77 (96)
68 1x1m_A Ubiquitin-like protein 99.3 2E-12 6.9E-17 113.5 8.8 69 24-92 11-98 (107)
69 1v5t_A 8430435I17RIK protein; 99.3 2.1E-12 7.2E-17 110.0 8.6 68 24-92 6-81 (90)
70 3b08_A Polyubiquitin-C, ubiqui 99.3 2.6E-12 8.9E-17 116.2 9.3 67 26-92 1-71 (152)
71 3u5c_f 40S ribosomal protein S 99.3 1.1E-13 3.7E-18 129.9 0.0 66 26-91 1-70 (152)
72 2kd0_A LRR repeats and ubiquit 99.3 2.9E-12 1E-16 108.2 8.6 67 26-92 12-82 (85)
73 1wxv_A BAG-family molecular ch 99.3 7.4E-12 2.5E-16 106.2 10.9 68 24-92 6-83 (92)
74 1we7_A SF3A1 protein; structur 99.3 9.1E-12 3.1E-16 110.5 10.5 70 22-91 22-105 (115)
75 2dzj_A Synaptic glycoprotein S 99.3 2.2E-12 7.6E-17 110.4 6.3 66 25-90 10-85 (88)
76 2kjr_A CG11242; UBL, ubiquitin 99.3 8.6E-12 3E-16 108.4 9.6 71 22-92 12-94 (95)
77 2daf_A FLJ35834 protein; hypot 99.2 2.5E-11 8.7E-16 110.0 10.5 67 26-92 16-87 (118)
78 1v86_A DNA segment, CHR 7, way 99.2 9.8E-12 3.3E-16 107.2 7.0 68 23-92 15-86 (95)
79 3ai5_A Yeast enhanced green fl 99.2 2.3E-11 7.8E-16 125.8 10.1 71 22-92 230-304 (307)
80 1wf9_A NPL4 family protein; be 99.2 2.1E-11 7.2E-16 107.3 7.1 66 26-92 8-93 (107)
81 2kj6_A Tubulin folding cofacto 99.2 5.4E-11 1.8E-15 103.9 9.1 70 23-92 12-94 (97)
82 1oqy_A HHR23A, UV excision rep 99.2 3.5E-11 1.2E-15 127.1 8.4 68 25-92 7-82 (368)
83 4b6w_A Tubulin-specific chaper 99.2 2.4E-11 8.2E-16 103.7 5.5 65 28-92 7-82 (86)
84 2io1_B Small ubiquitin-related 99.1 1.2E-10 4E-15 101.1 9.1 69 24-92 6-78 (94)
85 1v6e_A Cytoskeleton-associated 99.0 4E-10 1.4E-14 96.8 7.8 67 26-92 8-86 (95)
86 1wm3_A Ubiquitin-like protein 99.0 8.3E-10 2.8E-14 90.7 9.3 66 26-91 2-71 (72)
87 2kzr_A Ubiquitin thioesterase 99.0 4.5E-10 1.5E-14 94.7 6.9 66 26-92 1-76 (86)
88 1t0y_A Tubulin folding cofacto 99.0 7.3E-10 2.5E-14 99.7 8.2 70 23-92 4-85 (122)
89 3a4r_A Nfatc2-interacting prot 99.0 2.4E-09 8.2E-14 89.7 10.7 69 23-91 5-78 (79)
90 2io0_B Small ubiquitin-related 99.0 1.6E-09 5.6E-14 93.5 9.0 69 24-92 4-76 (91)
91 3shq_A UBLCP1; phosphatase, hy 98.9 1.3E-09 4.5E-14 113.0 7.0 66 26-92 6-78 (320)
92 2d07_B Ubiquitin-like protein 98.9 4.8E-09 1.7E-13 90.6 9.2 70 23-92 15-88 (93)
93 1wz0_A Ubiquitin-like protein 98.9 4.8E-09 1.7E-13 92.8 8.6 71 22-92 21-95 (104)
94 2k8h_A Small ubiquitin protein 98.8 5.6E-09 1.9E-13 93.4 7.6 71 22-92 23-97 (110)
95 2eke_C Ubiquitin-like protein 98.8 1E-08 3.5E-13 91.2 8.5 70 22-92 28-101 (106)
96 1wjn_A Tubulin-folding protein 98.4 3.5E-07 1.2E-11 78.5 7.6 71 22-92 6-91 (97)
97 3kyd_D Small ubiquitin-related 98.3 3.1E-06 1E-10 76.5 9.9 70 23-92 38-111 (115)
98 4efo_A Serine/threonine-protei 98.2 2.1E-06 7.3E-11 75.0 7.4 59 33-91 21-86 (94)
99 3pge_A SUMO-modified prolifera 98.1 9.5E-06 3.3E-10 79.5 9.4 70 22-92 26-99 (200)
100 3tix_A Ubiquitin-like protein 97.8 3.7E-05 1.2E-09 75.3 8.1 70 22-92 54-127 (207)
101 3v7o_A Minor nucleoprotein VP3 97.4 2E-05 7E-10 78.0 0.0 73 19-92 15-91 (227)
102 3uf8_A Ubiquitin-like protein 97.4 0.00061 2.1E-08 66.5 9.8 73 19-92 15-91 (209)
103 2pjh_A Protein NPL4, nuclear p 97.3 0.00016 5.5E-09 60.8 3.9 66 25-91 4-78 (80)
104 1cja_A Protein (actin-fragmin 97.2 0.00022 7.6E-09 74.9 5.3 142 151-332 76-238 (342)
105 3ix6_A TS, tsase, thymidylate 96.5 0.00041 1.4E-08 73.3 0.0 70 22-92 18-91 (360)
106 2jxx_A Nfatc2-interacting prot 96.4 0.017 5.8E-07 50.5 9.8 69 22-90 22-95 (97)
107 4da1_A Protein phosphatase 1K, 96.1 0.001 3.5E-08 69.9 0.0 70 22-92 27-100 (389)
108 3akj_A CTKA; protein kinase, t 95.9 0.0019 6.6E-08 66.8 1.3 49 283-334 139-188 (325)
109 2kc2_A Talin-1, F1; FERM, adhe 95.7 0.027 9.3E-07 51.7 7.7 38 27-64 13-50 (128)
110 2al3_A TUG long isoform; TUG U 95.6 0.044 1.5E-06 47.6 8.5 70 23-92 7-80 (90)
111 2l76_A Nfatc2-interacting prot 94.8 0.15 5.1E-06 44.7 9.4 66 26-92 22-91 (95)
112 3goe_A DNA repair protein RAD6 94.4 0.24 8.1E-06 42.3 9.3 67 25-91 9-80 (82)
113 3ls8_A Phosphatidylinositol 3- 82.5 0.76 2.6E-05 51.7 3.8 40 285-332 464-503 (614)
114 3qx1_A FAS-associated factor 1 82.0 4.5 0.00015 33.4 7.5 65 25-90 7-80 (84)
115 2kvr_A Ubiquitin carboxyl-term 75.3 2.1 7.2E-05 39.0 3.7 33 37-69 57-89 (130)
116 3tpd_A Serine/threonine-protei 74.9 3.1 0.0001 44.2 5.4 38 283-324 293-330 (440)
117 2dzk_A UBX domain-containing p 71.6 24 0.00083 30.7 9.5 68 25-92 13-89 (109)
118 2wxf_A Phosphatidylinositol-4, 69.8 1.8 6.2E-05 51.0 2.4 38 287-332 777-814 (940)
119 1e7u_A Phosphatidylinositol 3- 68.3 2 6.8E-05 50.7 2.3 38 287-332 793-830 (961)
120 2y3a_A Phosphatidylinositol-4, 67.4 2.3 7.8E-05 50.9 2.6 37 288-332 930-966 (1092)
121 1wj4_A KIAA0794 protein; UBX d 67.0 22 0.00076 31.8 8.4 68 24-92 42-118 (124)
122 1oey_A P67-PHOX, neutrophil cy 65.9 13 0.00045 31.6 6.3 45 26-72 6-50 (83)
123 4e71_A Plexin-B2, MM1; transme 64.7 20 0.00069 32.1 7.6 59 34-92 22-109 (111)
124 2r2o_A Plexin-B1; effector dom 60.0 25 0.00086 32.6 7.5 57 36-92 41-127 (138)
125 2x6h_A GH13170P, VPS34, phosph 59.4 2.6 8.9E-05 48.1 1.1 41 284-332 537-577 (696)
126 3hhm_A Phosphatidylinositol-4, 58.2 3.1 0.00011 49.8 1.4 40 285-332 924-963 (1091)
127 4eut_A Serine/threonine-protei 56.4 12 0.0004 38.1 5.3 42 34-75 320-361 (396)
128 2l32_A Small archaeal modifier 56.4 34 0.0012 28.0 7.0 61 26-92 1-61 (74)
129 3h6n_A Plexin-D1; structural g 55.2 45 0.0015 30.6 8.2 59 34-92 15-103 (127)
130 1wgr_A Growth factor receptor- 54.7 43 0.0015 29.4 7.8 72 21-92 5-91 (100)
131 2cr5_A Reproduction 8; UBX dom 54.7 42 0.0014 29.1 7.8 68 24-92 22-97 (109)
132 2kdi_A Ubiquitin, vacuolar pro 53.6 0.078 2.7E-06 46.8 -10.0 32 18-49 78-112 (114)
133 4a3p_A Ubiquitin carboxyl-term 53.3 24 0.00082 34.2 6.6 58 36-93 140-209 (217)
134 3ivf_A Talin-1; FERM domain, c 53.1 23 0.0008 36.3 6.9 95 35-144 12-120 (371)
135 3jyu_A Ubiquitin carboxyl-term 50.5 33 0.0011 33.6 7.1 57 37-93 153-221 (231)
136 2ylm_A Ubiquitin carboxyl-term 47.3 12 0.0004 41.2 3.7 33 37-69 37-69 (530)
137 1vjk_A Molybdopterin convertin 41.1 1.4E+02 0.0049 24.9 8.8 37 23-59 7-50 (98)
138 1s3s_G P47 protein; AAA ATPase 39.5 77 0.0026 28.3 7.2 54 25-78 52-108 (127)
139 1vd2_A Protein kinase C, IOTA 39.2 72 0.0025 27.3 6.6 47 27-73 6-54 (89)
140 2kmc_A Fermitin family homolog 38.0 79 0.0027 28.0 6.7 70 26-97 20-101 (102)
141 2bps_A YUKD protein; ubiquitin 37.2 73 0.0025 26.8 6.2 64 26-89 5-79 (81)
142 4e74_A Plexin-A4; RBD, structu 37.0 1E+02 0.0036 27.7 7.6 58 35-92 26-113 (117)
143 3qij_A Protein 4.1; cytoskelet 33.2 50 0.0017 33.0 5.5 40 23-62 15-54 (296)
144 1ryj_A Unknown; beta/alpha pro 32.9 1.8E+02 0.0062 22.9 8.1 62 25-92 4-65 (70)
145 3rpf_C Molybdopterin convertin 32.2 1.2E+02 0.004 24.1 6.6 51 40-91 16-68 (74)
146 1b0n_B Protein (SINI protein); 31.6 35 0.0012 27.2 3.2 24 391-414 17-40 (57)
147 3kuz_A Plexin-C1; structural g 30.4 1.3E+02 0.0044 27.6 7.1 29 36-64 39-71 (126)
148 2kmm_A Guanosine-3',5'-BIS(dip 28.6 86 0.003 24.2 5.1 62 26-92 1-62 (73)
149 1ef1_A Moesin; membrane, FERM 28.4 71 0.0024 31.4 5.6 37 26-63 2-38 (294)
150 3qa8_A MGC80376 protein; kinas 27.4 35 0.0012 38.6 3.5 47 32-78 318-365 (676)
151 2juo_A GA-binding protein alph 26.9 1.2E+02 0.0043 26.1 5.9 54 37-90 4-61 (89)
152 3po0_A Small archaeal modifier 25.9 2.5E+02 0.0087 22.6 7.7 57 34-91 15-83 (89)
153 1h4r_A Merlin; FERM, neurofibr 25.1 93 0.0032 31.0 5.8 39 24-63 21-59 (314)
154 3szt_A QCSR, quorum-sensing co 24.8 58 0.002 31.2 4.1 96 323-433 109-216 (237)
155 3ivf_A Talin-1; FERM domain, c 24.7 92 0.0031 31.9 5.8 37 26-62 86-122 (371)
156 1m3w_A H10H24; four-helix bund 24.2 35 0.0012 23.8 1.7 16 570-585 5-23 (32)
157 3au4_A Myosin-X; protein-prote 20.1 1.3E+02 0.0044 32.6 6.1 40 24-63 215-254 (555)
158 3dwg_C 9.5 kDa culture filtrat 20.0 2.5E+02 0.0087 22.8 6.6 57 34-91 15-87 (93)
No 1
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.70 E-value=3.5e-17 Score=142.78 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=65.8
Q ss_pred cccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 21 KSSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 21 rlsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
..+..|+|||||.+|++++++|++++||++||++|++++|||+++|||+|+|++|+|+.+ +|++++||||.
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 455669999999999999999999999999999999999999999999999999999986 99999999995
No 2
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.64 E-value=5.3e-16 Score=127.57 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=65.6
Q ss_pred cCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 23 SGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 23 sd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
+..|+|+||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+-
T Consensus 2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 3569999999999999999999999999999999999999999999999999999875 999999999963
No 3
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=2.8e-16 Score=138.61 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=65.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|||||.+|++++++|++++||++||++|++++|||+++|||+|+|++|+|+.+ +|++++||||+.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999986 899999999974
No 4
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.60 E-value=1.9e-15 Score=127.40 Aligned_cols=68 Identities=16% Similarity=0.274 Sum_probs=64.4
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
..|+||||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +| ++++|||+.
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~ 75 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE 75 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEe
Confidence 459999999999999999999999999999999999999999999999999999875 89 899999975
No 5
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.60 E-value=2.6e-15 Score=126.97 Aligned_cols=69 Identities=23% Similarity=0.407 Sum_probs=65.6
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCee-eccCCc----CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLT-LNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~-LeDd~t----~I~~dStLHLvR 92 (609)
.-|+|||||.+|+++.++|++++||.+||++|++++|||+++|||+|+|++ |+|+.+ +|+++++|||+.
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~ 82 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEV 82 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEE
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEE
Confidence 459999999999999999999999999999999999999999999999999 999885 999999999964
No 6
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=3.2e-15 Score=122.39 Aligned_cols=69 Identities=14% Similarity=0.281 Sum_probs=64.4
Q ss_pred CCeEEEEEeCCCcEE-EEE-eccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETGCVL-GME-LDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltGk~~-~~e-Ve~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|.|+|+|||.+|+++ .++ |++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 75 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLV 75 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 469999999999996 999 999999999999999999999999999999999998875 899999999964
No 7
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.1e-15 Score=131.13 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=62.5
Q ss_pred eEEEEEeCCCcEEEEEec--cCCCHHHHHHHH-HHHhCCCCCCcEEEeCCeeeccCCc----CC-CCCCeeeee
Q 037804 26 RRVFVQTETGCVLGMELD--RNDNAHTVKRRL-QLALNIPTDESSLTFGDLTLNNDLS----AI-KKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe--~sdTV~~VKqkI-qekeGIP~eqQRLIf~Gk~LeDd~t----~I-~~dStLHLv 91 (609)
|+|||||++|++++++|+ +++||..||++| ++++|+|+++|||||+|++|+|+.+ +| +++++|||+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~ 75 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVM 75 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEE
Confidence 899999999999999877 999999999999 9999999999999999999999985 89 699999995
No 8
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.58 E-value=3.9e-15 Score=126.12 Aligned_cols=66 Identities=23% Similarity=0.372 Sum_probs=63.8
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
|+|+|||.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~ 70 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 70 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999875 89999999996
No 9
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.58 E-value=7e-15 Score=121.98 Aligned_cols=70 Identities=10% Similarity=0.252 Sum_probs=65.4
Q ss_pred cCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHH---hCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 23 SGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLA---LNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 23 sd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqek---eGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
...|+|+||+.+|+++.++|++++||.+||++|+++ .|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~ 79 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV 79 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEE
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEE
Confidence 456999999999999999999999999999999998 8999999999999999999875 899999999975
No 10
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.58 E-value=4.2e-15 Score=122.20 Aligned_cols=68 Identities=6% Similarity=0.174 Sum_probs=65.1
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
-|+|+|||.+|+++.++|++++||..||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~ 74 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 74 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEE
Confidence 38999999999999999999999999999999999999999999999999999986 999999999964
No 11
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.57 E-value=5.8e-15 Score=123.87 Aligned_cols=71 Identities=15% Similarity=0.271 Sum_probs=65.3
Q ss_pred cccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 21 KSSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 21 rlsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
+.+..|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+ +| ++++|||+.
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp --CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred cCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEE
Confidence 455679999999999999999999999999999999999999999999999999999875 89 899999974
No 12
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.57 E-value=6.1e-15 Score=127.34 Aligned_cols=71 Identities=6% Similarity=0.165 Sum_probs=66.7
Q ss_pred ccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 22 SSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 22 lsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
.+..|+|+|||.+|+++.|+|++++||..||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~ 92 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 92 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEE
Confidence 45569999999999999999999999999999999999999999999999999999986 999999999964
No 13
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.56 E-value=9.9e-15 Score=123.78 Aligned_cols=70 Identities=31% Similarity=0.512 Sum_probs=66.4
Q ss_pred ccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 22 SSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 22 lsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
....|+|+||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEE
Confidence 45569999999999999999999999999999999999999999999999999999875 99999999996
No 14
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.55 E-value=1.4e-14 Score=120.75 Aligned_cols=69 Identities=23% Similarity=0.396 Sum_probs=65.4
Q ss_pred cCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 23 SGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 23 sd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
...|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~ 82 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 82 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 3459999999999999999999999999999999999999999999999999999875 89999999995
No 15
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=2.3e-14 Score=122.99 Aligned_cols=67 Identities=15% Similarity=0.304 Sum_probs=63.8
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHH---hCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLA---LNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqek---eGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|+|||.+|+++.++|++++||.+||++|+++ +|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~ 74 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMV 74 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEE
Confidence 799999999999999999999999999999999 8999999999999999999875 899999999964
No 16
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.54 E-value=1e-14 Score=123.34 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=65.1
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
.|+|+|||.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~ 75 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 49999999999999999999999999999999999999999999999999999875 899999999964
No 17
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.53 E-value=2.1e-14 Score=115.57 Aligned_cols=67 Identities=22% Similarity=0.355 Sum_probs=64.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999998874 899999999963
No 18
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.53 E-value=1.1e-14 Score=127.43 Aligned_cols=71 Identities=11% Similarity=0.168 Sum_probs=63.1
Q ss_pred ccCCeEEEEEeCCCcEEEE--EeccCCCHHHHHHHH-HHHhCCCCCCcEEEeCCeeeccCCc----CC-CCCCeeeeee
Q 037804 22 SSGTRRVFVQTETGCVLGM--ELDRNDNAHTVKRRL-QLALNIPTDESSLTFGDLTLNNDLS----AI-KKDSALLLTR 92 (609)
Q Consensus 22 lsd~~qIfVKTltGk~~~~--eVe~sdTV~~VKqkI-qekeGIP~eqQRLIf~Gk~LeDd~t----~I-~~dStLHLvR 92 (609)
....|+|+|||++|++|++ +|++++||.+||++| +++.|+|+++|||||+|++|+|+.+ +| +++++|||+-
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence 3456999999999998777 555999999999999 8889999999999999999999875 89 9999999964
No 19
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.53 E-value=3.2e-14 Score=119.37 Aligned_cols=69 Identities=13% Similarity=0.220 Sum_probs=64.7
Q ss_pred CCeEEEEEeCCC-cEEEE-EeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETG-CVLGM-ELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltG-k~~~~-eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
..|+|+||+.+| +++.+ +|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 80 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLV 80 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEE
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEE
Confidence 459999999999 79999 5999999999999999999999999999999999999875 899999999963
No 20
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.1e-14 Score=127.91 Aligned_cols=67 Identities=9% Similarity=0.190 Sum_probs=63.6
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|+|||.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMV 72 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999874 899999999974
No 21
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=2.6e-14 Score=121.04 Aligned_cols=68 Identities=28% Similarity=0.450 Sum_probs=64.4
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
+|+|+|||.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 80 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 80 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 59999999999999999999999999999999999999999999999999998875 899999999964
No 22
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=3.7e-14 Score=118.34 Aligned_cols=69 Identities=20% Similarity=0.373 Sum_probs=65.5
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
..|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSK 78 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEE
Confidence 459999999999999999999999999999999999999999999999999999875 899999999964
No 23
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.51 E-value=4.1e-14 Score=120.30 Aligned_cols=67 Identities=31% Similarity=0.491 Sum_probs=63.9
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
+|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 48999999999999999999999999999999999999999999999999999875 89999999995
No 24
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.8e-14 Score=115.03 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=65.0
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
..|+|+||+.+|+++.++|++++||++||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+-
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVV 78 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEEC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 349999999999999999999999999999999999999999999999999998875 899999999963
No 25
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.51 E-value=5.6e-14 Score=114.07 Aligned_cols=66 Identities=14% Similarity=0.250 Sum_probs=63.5
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|+||+ +|+++.++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 74 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVK 74 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEE
Confidence 8999999 99999999999999999999999999999999999999999999875 899999999986
No 26
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=3.3e-14 Score=122.66 Aligned_cols=68 Identities=31% Similarity=0.484 Sum_probs=64.9
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
.|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 22 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~ 93 (98)
T 4hcn_B 22 PMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 93 (98)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEEC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 49999999999999999999999999999999999999999999999999999875 899999999963
No 27
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.51 E-value=4.8e-14 Score=121.52 Aligned_cols=70 Identities=19% Similarity=0.329 Sum_probs=65.1
Q ss_pred ccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccC-Cc----CCCCCCeeeeee
Q 037804 22 SSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNND-LS----AIKKDSALLLTR 92 (609)
Q Consensus 22 lsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd-~t----~I~~dStLHLvR 92 (609)
....|+||||+.+| ++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+ .+ +|+++++|||+.
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~ 86 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFL 86 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEE
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 34559999999998 999999999999999999999999999999999999999999 65 999999999964
No 28
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=3.3e-14 Score=117.44 Aligned_cols=68 Identities=29% Similarity=0.414 Sum_probs=64.3
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
.|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 74 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLL 74 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEE
Confidence 48999999999999999999999999999999999999999999999999999875 899999999963
No 29
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.50 E-value=4.6e-14 Score=130.20 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=69.5
Q ss_pred cccc-ccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 18 LGAK-SSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 18 ~~~r-lsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
+-.+ +.+.|+|+|||.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+
T Consensus 73 l~~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~ 151 (159)
T 3rt3_B 73 LVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN 151 (159)
T ss_dssp EEECCCCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEccCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEE
Confidence 4455 58899999999999999999999999999999999999999999999999999999875 99999999996
No 30
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=6.2e-14 Score=115.59 Aligned_cols=68 Identities=31% Similarity=0.451 Sum_probs=64.7
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
.|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 74 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLL 74 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 48999999999999999999999999999999999999999999999999999875 899999999963
No 31
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.50 E-value=6.6e-14 Score=112.69 Aligned_cols=67 Identities=30% Similarity=0.483 Sum_probs=63.8
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|+||+.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|.|+.+ +|+++++|||+.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVL 71 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999998874 899999999963
No 32
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=5.1e-14 Score=127.07 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=63.2
Q ss_pred ccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHH------HhCC--CCCCcEEEeCCeeeccCCc----CCCCC--Ce
Q 037804 22 SSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQL------ALNI--PTDESSLTFGDLTLNNDLS----AIKKD--SA 87 (609)
Q Consensus 22 lsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqe------keGI--P~eqQRLIf~Gk~LeDd~t----~I~~d--St 87 (609)
..+.|+|+|||++|++++|+|++++||.+||++|++ ++|+ |+++|||||.|++|+|+.+ +|+.+ +|
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 456699999999999999999999999999999999 7786 6999999999999999975 66544 78
Q ss_pred eeeee
Q 037804 88 LLLTR 92 (609)
Q Consensus 88 LHLvR 92 (609)
||||.
T Consensus 93 lhLvl 97 (116)
T 1wgh_A 93 MHLVA 97 (116)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99974
No 33
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.49 E-value=3.3e-14 Score=128.85 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=62.0
Q ss_pred eEEEEEeCCCc-EEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCC-------CCCeeeeee
Q 037804 26 RRVFVQTETGC-VLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIK-------KDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk-~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~-------~dStLHLvR 92 (609)
|+|||++..|+ ++.++|++++||..||++|++++|||+++|||||+|++|+|+.+ +|+ +++||||+-
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEe
Confidence 67888888887 59999999999999999999999999999999999999999986 898 799999963
No 34
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.48 E-value=7.9e-14 Score=122.17 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=65.9
Q ss_pred cCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 23 SGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 23 sd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
...|+|+|||.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~ 94 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIV 94 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 3459999999999999999999999999999999999999999999999999999874 999999999974
No 35
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.48 E-value=3.8e-14 Score=125.87 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=62.2
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCC---------------CCcEEEeCCeeeccC-Cc----CCCCC
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPT---------------DESSLTFGDLTLNND-LS----AIKKD 85 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~---------------eqQRLIf~Gk~LeDd-~t----~I~~d 85 (609)
|+|+|||++|+++.++|++++||.+||++|++++|+|+ ++|+|||+|++|.|| .+ +|+++
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 99999999999999999999999999999999999987 467999999999754 54 99999
Q ss_pred Ceeeeee
Q 037804 86 SALLLTR 92 (609)
Q Consensus 86 StLHLvR 92 (609)
++||||.
T Consensus 88 ~~l~lv~ 94 (105)
T 1v2y_A 88 DEVSFIK 94 (105)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 9999985
No 36
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.48 E-value=7.5e-14 Score=119.66 Aligned_cols=72 Identities=13% Similarity=0.272 Sum_probs=62.4
Q ss_pred cccccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 19 GAKSSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 19 ~~rlsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
...+...|+|+||+ |+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+-
T Consensus 13 ~~~~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~ 88 (93)
T 2l7r_A 13 GLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAG 88 (93)
T ss_dssp -------CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEEC
T ss_pred CCCCCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 34466679999999 9999999999999999999999999999999999999999999875 899999999963
No 37
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.47 E-value=5.3e-14 Score=123.27 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=61.4
Q ss_pred cCCeEEEEEeCCCc--EEEEEeccCCCHHHHHHHHHHH-hCCCC-CCcEEEeCCeeeccCCc------CCCCCCeeeee
Q 037804 23 SGTRRVFVQTETGC--VLGMELDRNDNAHTVKRRLQLA-LNIPT-DESSLTFGDLTLNNDLS------AIKKDSALLLT 91 (609)
Q Consensus 23 sd~~qIfVKTltGk--~~~~eVe~sdTV~~VKqkIqek-eGIP~-eqQRLIf~Gk~LeDd~t------~I~~dStLHLv 91 (609)
...|+|+|||++|+ +++++|++++||..||++|+++ +|+|+ ++|||||+|++|+|+.+ +|++++|||||
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 34599999999999 7899999999999999999997 57765 99999999999999873 79999999996
No 38
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.47 E-value=5.9e-14 Score=128.48 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=66.7
Q ss_pred ccccccCCeEEEEEeCCCcEE-EEEeccCCCHHHHHHHH-----HHHhCCCC--CCcEEEeCCeeeccCCc----CCCCC
Q 037804 18 LGAKSSGTRRVFVQTETGCVL-GMELDRNDNAHTVKRRL-----QLALNIPT--DESSLTFGDLTLNNDLS----AIKKD 85 (609)
Q Consensus 18 ~~~rlsd~~qIfVKTltGk~~-~~eVe~sdTV~~VKqkI-----qekeGIP~--eqQRLIf~Gk~LeDd~t----~I~~d 85 (609)
++.-..+.|+|+|||++|+++ .+++++++||.+||++| ++++|||+ ++|||||+|++|+|+.+ +|+++
T Consensus 9 ~~~~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~ 88 (126)
T 1se9_A 9 LEAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVS 88 (126)
T ss_dssp -CCSSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTT
T ss_pred hhhhhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcC
Confidence 455567899999999999999 79999999999999999 56789997 89999999999999985 89887
Q ss_pred ------Ceeeeee
Q 037804 86 ------SALLLTR 92 (609)
Q Consensus 86 ------StLHLvR 92 (609)
+|+|||-
T Consensus 89 ~~~~~v~tmhlVl 101 (126)
T 1se9_A 89 NLAGAVTTMHVII 101 (126)
T ss_dssp SCTTCCEEEEEEE
T ss_pred CccCCcEEEEEEe
Confidence 7899964
No 39
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=9.8e-14 Score=118.27 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=63.4
Q ss_pred CCeEEEEEeCCCc--EEEEEeccCCCHHHHHHHHHHHh--CCCCCCcEEEeCCeeeccCCc------CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETGC--VLGMELDRNDNAHTVKRRLQLAL--NIPTDESSLTFGDLTLNNDLS------AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltGk--~~~~eVe~sdTV~~VKqkIqeke--GIP~eqQRLIf~Gk~LeDd~t------~I~~dStLHLvR 92 (609)
..|+|+||+.+|+ ++.++|++++||.+||++|++++ |+|+++|||||+|+.|+|+.+ +|+++++|||+.
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 3499999999999 78888889999999999999998 999999999999999999873 789999999974
No 40
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.47 E-value=6.1e-15 Score=143.18 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=0.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCcCCCCCCeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLSAIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t~I~~dStLHLv 91 (609)
|||||||++|++++|+|++++||.+||++|++++|||+++|||||+|++|+|+.+ +.++||||||
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~T-Ls~~STLhLv 65 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTEL-VTDDVTYYLS 65 (189)
T ss_dssp ------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCc-ccCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999887 5599999995
No 41
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.47 E-value=9.4e-14 Score=130.25 Aligned_cols=74 Identities=31% Similarity=0.474 Sum_probs=70.7
Q ss_pred ccccccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 18 LGAKSSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 18 ~~~rlsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
+-+|+.++++|+||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+
T Consensus 89 l~~~~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~ 166 (172)
T 3u30_A 89 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 166 (172)
T ss_dssp EEECCCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEEC
T ss_pred eeecccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEE
Confidence 567889999999999999999999999999999999999999999999999999999999875 99999999995
No 42
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.20 E-value=4.5e-15 Score=120.73 Aligned_cols=66 Identities=20% Similarity=0.339 Sum_probs=63.4
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
|+|+||+.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+ +|+++++|||+
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIV 70 (76)
Confidence 7999999999999999999999999999999999999999999999999998874 89999999995
No 43
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.46 E-value=1.2e-13 Score=131.08 Aligned_cols=67 Identities=31% Similarity=0.491 Sum_probs=64.3
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|||+|||.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvl 71 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999999875 899999999963
No 44
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.46 E-value=1.7e-13 Score=121.20 Aligned_cols=68 Identities=31% Similarity=0.481 Sum_probs=65.0
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
.|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 59999999999999999999999999999999999999999999999999999875 899999999963
No 45
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.45 E-value=1.8e-13 Score=120.82 Aligned_cols=72 Identities=6% Similarity=0.097 Sum_probs=65.6
Q ss_pred cccCCeEEEEEeCC----CcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 21 KSSGTRRVFVQTET----GCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 21 rlsd~~qIfVKTlt----Gk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
+-.+.-.|.|++.+ |+++.++|++++||..||++|++++|||+++|||||+|++|+|+.+ +|+++++||+++
T Consensus 11 ~~tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~ 90 (100)
T 1wju_A 11 RTTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE 90 (100)
T ss_dssp SCCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEEC
T ss_pred hhcceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 34455578888888 8899999999999999999999999999999999999999999986 999999998886
No 46
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=1.8e-13 Score=116.84 Aligned_cols=69 Identities=23% Similarity=0.194 Sum_probs=64.8
Q ss_pred cCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 23 SGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 23 sd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
...|+|+||+. |+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 87 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVV 87 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCB
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEE
Confidence 34599999999 9999999999999999999999999999999999999999999875 899999999964
No 47
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.45 E-value=2e-13 Score=117.21 Aligned_cols=67 Identities=31% Similarity=0.485 Sum_probs=64.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 71 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999998875 899999999964
No 48
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.44 E-value=4.6e-13 Score=116.64 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=65.0
Q ss_pred cCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 23 SGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 23 sd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
.+.|+|+||+. |+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 23 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~ 95 (101)
T 2klc_A 23 PKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVI 95 (101)
T ss_dssp CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEE
T ss_pred CCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEE
Confidence 46699999999 9999999999999999999999999999999999999999998875 899999999974
No 49
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.44 E-value=2.3e-13 Score=127.62 Aligned_cols=69 Identities=30% Similarity=0.472 Sum_probs=65.4
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
..|+||||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+-
T Consensus 19 ~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 91 (172)
T 3u30_A 19 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 91 (172)
T ss_dssp CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEE
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeee
Confidence 449999999999999999999999999999999999999999999999999999875 899999999963
No 50
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.44 E-value=2.8e-13 Score=120.46 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=62.3
Q ss_pred eEEEEEeCCC--cEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CC-CCCCeeeee
Q 037804 26 RRVFVQTETG--CVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AI-KKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltG--k~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I-~~dStLHLv 91 (609)
|+|+|++..+ .+++++|++++||..||++|++++|||+++|||+|+|+.|+|+.+ || ++|++|||+
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~ 97 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLY 97 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEE
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEE
Confidence 8999999985 799999999999999999999999999999999999999998875 99 699999995
No 51
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.44 E-value=1.5e-13 Score=124.68 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=62.4
Q ss_pred eEEEEEeCCCc-EEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCC-------CCeeeee
Q 037804 26 RRVFVQTETGC-VLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKK-------DSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk-~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~-------dStLHLv 91 (609)
|.|||+.-.+| ++.++|++++||..||++|++++|||+++|||||+|++|+|+++ ||++ ++||||+
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lv 78 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEE
Confidence 67899988899 89999999999999999999999999999999999999999985 8999 9999996
No 52
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=3.4e-13 Score=117.41 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=65.1
Q ss_pred ccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 22 SSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 22 lsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
.+..|+|+||+.+|+ +.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~ 92 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVI 92 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEE
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEE
Confidence 455599999999997 7999999999999999999999999999999999999999875 999999999974
No 53
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=125.33 Aligned_cols=70 Identities=10% Similarity=0.095 Sum_probs=62.8
Q ss_pred cCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHH------HhCCC--CCCcEEEeCCeeeccCCc----CCCCCC--ee
Q 037804 23 SGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQL------ALNIP--TDESSLTFGDLTLNNDLS----AIKKDS--AL 88 (609)
Q Consensus 23 sd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqe------keGIP--~eqQRLIf~Gk~LeDd~t----~I~~dS--tL 88 (609)
.+.|+|+|||++|++++++|++++||.+||++|++ ++||| +++|||||+|++|+|+.+ +|+.++ ||
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 34599999999999999999999999999999999 88995 899999999999999985 787554 89
Q ss_pred eeee
Q 037804 89 LLTR 92 (609)
Q Consensus 89 HLvR 92 (609)
|||.
T Consensus 95 hlv~ 98 (125)
T 2gow_A 95 HLVA 98 (125)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9964
No 54
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.43 E-value=5.2e-13 Score=116.23 Aligned_cols=69 Identities=13% Similarity=0.258 Sum_probs=63.6
Q ss_pred CCeEEEEEeCCC----cEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccC-Cc----CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETG----CVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNND-LS----AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltG----k~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd-~t----~I~~dStLHLvR 92 (609)
..|+|+||+.+| ++++++|++++||.+||++|++++|||+++|||+|+|++|+|+ .+ +|+++++|||+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 459999999865 7999999999999999999999999999999999999999987 44 899999999964
No 55
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.42 E-value=4e-13 Score=119.64 Aligned_cols=70 Identities=27% Similarity=0.459 Sum_probs=65.6
Q ss_pred cCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 23 SGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 23 sd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
.+-.+|+||+++|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~ 80 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVL 80 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEE
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 3457999999999999999999999999999999999999999999999999998874 899999999964
No 56
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=8.8e-13 Score=115.19 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=64.2
Q ss_pred cCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 23 SGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 23 sd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
...|+|+||+.+|+ +.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 87 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVI 87 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEE
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEE
Confidence 44599999999997 7999999999999999999999999999999999999999875 899999999964
No 57
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.41 E-value=3.1e-13 Score=131.06 Aligned_cols=66 Identities=32% Similarity=0.507 Sum_probs=64.1
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
|||||||++|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lv 175 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 175 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEEC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999875 89999999996
No 58
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.41 E-value=4.4e-13 Score=123.62 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=64.2
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEE-e-CCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLT-F-GDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLI-f-~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|+|||.+|++++++|++++||.+||++|++++|||+++|||+ | +|++|+|+.+ +|+++++|||+.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~ 75 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVV 75 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEc
Confidence 89999999999999999999999999999999999999999999 9 7999999875 999999999975
No 59
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.41 E-value=1.2e-13 Score=120.56 Aligned_cols=74 Identities=14% Similarity=0.218 Sum_probs=62.2
Q ss_pred ccccccCC--eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 18 LGAKSSGT--RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 18 ~~~rlsd~--~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
..+++.+. ++|+||+ +|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+
T Consensus 19 ~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv 97 (101)
T 3m63_B 19 ENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97 (101)
T ss_dssp ----------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEEC
T ss_pred eeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 56666666 4688888 99999999999999999999999999999999999999999999874 99999999998
Q ss_pred e
Q 037804 92 R 92 (609)
Q Consensus 92 R 92 (609)
+
T Consensus 98 ~ 98 (101)
T 3m63_B 98 K 98 (101)
T ss_dssp C
T ss_pred e
Confidence 5
No 60
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.40 E-value=5.8e-13 Score=117.41 Aligned_cols=70 Identities=17% Similarity=0.331 Sum_probs=66.0
Q ss_pred ccCCeEEEEEeC---CCcEEEEEecc-CCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 22 SSGTRRVFVQTE---TGCVLGMELDR-NDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 22 lsd~~qIfVKTl---tGk~~~~eVe~-sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
..+.|+|+||+. +|+++.++|++ ++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~ 101 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLS 101 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEE
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEE
Confidence 456799999999 99999999998 999999999999999999999999999999999875 89999999996
No 61
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=1e-12 Score=119.18 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=64.9
Q ss_pred cCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 23 SGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 23 sd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
...|+|+||+. |+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~ 102 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVI 102 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEE
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 35699999999 9999999999999999999999999999999999999999998875 899999999974
No 62
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1e-12 Score=115.62 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=62.1
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEe--CCeeeccCCc----CCCCCCeeeeee
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTF--GDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf--~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
.|++|+++.+|++++++|++++||+.||++|++++|||+++|+|+| +|+ |+|+.+ +|+++++||||-
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl 80 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLT 80 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECC
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEe
Confidence 4899999999999999999999999999999999999999999997 566 988875 899999999974
No 63
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.39 E-value=2e-12 Score=114.18 Aligned_cols=69 Identities=30% Similarity=0.453 Sum_probs=65.2
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
..|+|+||+.+|+++.++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 459999999999999999999999999999999999999999999999999998874 899999999964
No 64
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=7.4e-13 Score=113.07 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=61.4
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccC-Cc----CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNND-LS----AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd-~t----~I~~dStLHLvR 92 (609)
..|+|+||+.+|+++.++|++++||.+||++|++++ +++|||+|+|+.|+|+ .+ +|+++++|||+.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~ 76 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHR 76 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEEC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEE
Confidence 349999999999999999999999999999999988 6999999999999998 64 899999999975
No 65
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.38 E-value=1.2e-12 Score=118.47 Aligned_cols=75 Identities=31% Similarity=0.458 Sum_probs=70.3
Q ss_pred ccccccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 18 LGAKSSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 18 ~~~rlsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
+..++.+.|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 69 l~~~~~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (152)
T 3b08_A 69 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 147 (152)
T ss_dssp EEECCTTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEeecccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 556778889999999999999999999999999999999999999999999999999998875 899999999964
No 66
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.37 E-value=4.3e-14 Score=127.84 Aligned_cols=66 Identities=32% Similarity=0.509 Sum_probs=0.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
|+|+|||.+|+++.++|++++||.+||++|++.+|||+++|+|+|+|+.|+|+.+ +|+++++|||+
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~ 70 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (128)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999875 89999999995
No 67
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.35 E-value=2.8e-12 Score=111.06 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=62.5
Q ss_pred CCeEEEEEeCCCcEE-EEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETGCVL-GMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltGk~~-~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
..|+|+||+ .|+++ .++|++++||.+||++|+++.|||+++|||+|.|+.|+|+ + +|+++++|||+.
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~ 77 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMG 77 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEe
Confidence 348999996 79999 6999999999999999999999999999999999999988 5 899999999985
No 68
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.34 E-value=2e-12 Score=113.54 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=63.2
Q ss_pred CCeEEEEEeCCC---cEEEEE--------eccC-CCHHHHHHHHHHHh--CCCCCC-cEEEeCCeeeccCCc----CCCC
Q 037804 24 GTRRVFVQTETG---CVLGME--------LDRN-DNAHTVKRRLQLAL--NIPTDE-SSLTFGDLTLNNDLS----AIKK 84 (609)
Q Consensus 24 d~~qIfVKTltG---k~~~~e--------Ve~s-dTV~~VKqkIqeke--GIP~eq-QRLIf~Gk~LeDd~t----~I~~ 84 (609)
..|+|+||+.+| +++.++ |+++ +||.+||++|++++ |+|+++ |||+|+|+.|+|+.+ +|++
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 348999999999 899999 5555 99999999999999 999999 999999999999875 8999
Q ss_pred CCeeeeee
Q 037804 85 DSALLLTR 92 (609)
Q Consensus 85 dStLHLvR 92 (609)
+++|||+.
T Consensus 91 g~~i~lv~ 98 (107)
T 1x1m_A 91 GSTVHVLR 98 (107)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 99999975
No 69
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.34 E-value=2.1e-12 Score=110.00 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=63.9
Q ss_pred CCeEEEEEeCCCcEEEE-EeccCCCHHHHHHHHHHHhCCCCCCcEEE---eCCeeeccCCc----CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETGCVLGM-ELDRNDNAHTVKRRLQLALNIPTDESSLT---FGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~-eVe~sdTV~~VKqkIqekeGIP~eqQRLI---f~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
..|+|+||+ .|+++.+ +|++++||.+||++|++++|||+++|||+ |+|+.|+|+.+ +|+++++|||+.
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMG 81 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEEC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEe
Confidence 348999997 8999999 99999999999999999999999999999 99999998875 899999999985
No 70
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.33 E-value=2.6e-12 Score=116.16 Aligned_cols=67 Identities=31% Similarity=0.485 Sum_probs=64.2
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|+|+|||.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+ +|.++++|||+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 71 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEe
Confidence 7999999999999999999999999999999999999999999999999998875 899999999975
No 71
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.33 E-value=1.1e-13 Score=129.93 Aligned_cols=66 Identities=32% Similarity=0.509 Sum_probs=0.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
|+|+|||++|+++.++|++++||.+||++|++.+|||+++|||+|+|++|+|+.+ +|+++++|||+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lv 70 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999875 89999999995
No 72
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.33 E-value=2.9e-12 Score=108.20 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=62.9
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
-.++|++.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 12 ~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 12 TIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp CEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred cEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence 4578999999999999999999999999999999999999999999999998874 899999999975
No 73
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.32 E-value=7.4e-12 Score=106.24 Aligned_cols=68 Identities=12% Similarity=0.210 Sum_probs=62.2
Q ss_pred CCeEEEEEeCCCcEEEEEeccC-----CCHHHHHHHHHHHhCCCCCCcEEEeCCeeecc-CCc----CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETGCVLGMELDRN-----DNAHTVKRRLQLALNIPTDESSLTFGDLTLNN-DLS----AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~s-----dTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeD-d~t----~I~~dStLHLvR 92 (609)
..|+|+||+ .|+++.++|+++ .||.+||++|+++.|||+++|||+|+|+.|+| +.+ +|+++++|||+.
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 359999999 699999999995 99999999999999999999999999999998 433 899999999975
No 74
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.30 E-value=9.1e-12 Score=110.54 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=65.2
Q ss_pred ccCCeEEEEEeC----------CCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCe
Q 037804 22 SSGTRRVFVQTE----------TGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSA 87 (609)
Q Consensus 22 lsd~~qIfVKTl----------tGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dSt 87 (609)
..+.++|.|++. +|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++
T Consensus 22 ~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~ 101 (115)
T 1we7_A 22 NKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAV 101 (115)
T ss_dssp CCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCE
T ss_pred CCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCE
Confidence 456799999986 58999999999999999999999999999999999999999999875 8999999
Q ss_pred eeee
Q 037804 88 LLLT 91 (609)
Q Consensus 88 LHLv 91 (609)
|||+
T Consensus 102 i~lv 105 (115)
T 1we7_A 102 IHLA 105 (115)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
No 75
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=2.2e-12 Score=110.36 Aligned_cols=66 Identities=9% Similarity=0.080 Sum_probs=60.6
Q ss_pred CeEEEEEeCCCcEE--EE-EeccCCCHHHHHHHHHHH-hCCCCCCcEEEeC--CeeeccCCc----CCCCCCeeee
Q 037804 25 TRRVFVQTETGCVL--GM-ELDRNDNAHTVKRRLQLA-LNIPTDESSLTFG--DLTLNNDLS----AIKKDSALLL 90 (609)
Q Consensus 25 ~~qIfVKTltGk~~--~~-eVe~sdTV~~VKqkIqek-eGIP~eqQRLIf~--Gk~LeDd~t----~I~~dStLHL 90 (609)
.|+|+|||.+|+++ ++ +|++++||.+||++|+++ .|||+++|||+|. |++|+|+.+ +|+++++||+
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 39999999999886 58 999999999999999995 8999999999987 999998875 8999999987
No 76
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.29 E-value=8.6e-12 Score=108.40 Aligned_cols=71 Identities=18% Similarity=0.162 Sum_probs=63.1
Q ss_pred ccCCeEEEEEeCCCc--EEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeC--Ce---ee-ccCCc----CCCCCCeee
Q 037804 22 SSGTRRVFVQTETGC--VLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFG--DL---TL-NNDLS----AIKKDSALL 89 (609)
Q Consensus 22 lsd~~qIfVKTltGk--~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~--Gk---~L-eDd~t----~I~~dStLH 89 (609)
..+.+.|+|++.+++ +++++|++++||.+||++|+.++|||+++|||+|. |+ +| +|+.+ +|+++++||
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 466789999998775 89999999999999999999999999999999997 45 55 77765 999999999
Q ss_pred eee
Q 037804 90 LTR 92 (609)
Q Consensus 90 LvR 92 (609)
|+.
T Consensus 92 lvD 94 (95)
T 2kjr_A 92 VVD 94 (95)
T ss_dssp EEE
T ss_pred EEC
Confidence 985
No 77
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.5e-11 Score=109.96 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=63.1
Q ss_pred eEEEEE-eCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQ-TETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVK-TltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
+.|.|| +..|.++++.++++.||++||++|++++++|+++|||||+|+.|+|+.+ ||+++.|||||.
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi 87 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEI 87 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEE
Confidence 677777 7778899999999999999999999999999999999999999999987 999999999986
No 78
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.24 E-value=9.8e-12 Score=107.15 Aligned_cols=68 Identities=4% Similarity=0.149 Sum_probs=61.8
Q ss_pred cCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 23 SGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 23 sd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
...|+|+||. .|+++.++|++++||.+||++|+++.|||+++|||+|.|++|+| .+ +|+++++|||+.
T Consensus 15 ~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~ 86 (95)
T 1v86_A 15 KELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVG 86 (95)
T ss_dssp CCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECC
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEe
Confidence 3459999995 79999999999999999999999999999999999999999944 44 899999999985
No 79
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.22 E-value=2.3e-11 Score=125.83 Aligned_cols=71 Identities=31% Similarity=0.495 Sum_probs=67.2
Q ss_pred ccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 22 SSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 22 lsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
.++.|+|+||+++|+++.++|++++||.+||++|+++.|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~Lvl 304 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 304 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 56779999999999999999999999999999999999999999999999999998875 899999999974
No 80
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.20 E-value=2.1e-11 Score=107.32 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=60.3
Q ss_pred eEEEEEeCCCcEEEEEec-cCCCHHHHHHHHHHHhCCCCCCcEEEeCCe-----------e----eccCCc----CCCCC
Q 037804 26 RRVFVQTETGCVLGMELD-RNDNAHTVKRRLQLALNIPTDESSLTFGDL-----------T----LNNDLS----AIKKD 85 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe-~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk-----------~----LeDd~t----~I~~d 85 (609)
|+|+|||.+|+. .++|+ +++||.+||++|++++|||+++|||+|.++ + ++|+.+ +|+++
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 899999999977 89999 999999999999999999999999999988 5 466664 89999
Q ss_pred Ceeeeee
Q 037804 86 SALLLTR 92 (609)
Q Consensus 86 StLHLvR 92 (609)
++|||+.
T Consensus 87 ~~L~l~~ 93 (107)
T 1wf9_A 87 SMVYLAY 93 (107)
T ss_dssp CEEECCC
T ss_pred CEEEEEe
Confidence 9999975
No 81
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.18 E-value=5.4e-11 Score=103.93 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=60.9
Q ss_pred cCCeEEEEEeCCC--cEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCe---e---e-ccCCc----CCCCCCeee
Q 037804 23 SGTRRVFVQTETG--CVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDL---T---L-NNDLS----AIKKDSALL 89 (609)
Q Consensus 23 sd~~qIfVKTltG--k~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk---~---L-eDd~t----~I~~dStLH 89 (609)
++-+.|+|++.+. +.++++|++++||++||++|+.++|||+++|||+|.|+ . | +|+.+ +|+++++||
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ih 91 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLH 91 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEE
Confidence 3457899998666 48999999999999999999999999999999999883 3 4 77765 999999999
Q ss_pred eee
Q 037804 90 LTR 92 (609)
Q Consensus 90 LvR 92 (609)
|+.
T Consensus 92 lvd 94 (97)
T 2kj6_A 92 IID 94 (97)
T ss_dssp EEE
T ss_pred EEe
Confidence 985
No 82
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.16 E-value=3.5e-11 Score=127.14 Aligned_cols=68 Identities=10% Similarity=0.288 Sum_probs=63.1
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHH---HhCCCCCCcEEEeCCeeeccCCc----CCCCCCee-eeee
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQL---ALNIPTDESSLTFGDLTLNNDLS----AIKKDSAL-LLTR 92 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqe---keGIP~eqQRLIf~Gk~LeDd~t----~I~~dStL-HLvR 92 (609)
.|+|+|||++|+++.|+|++++||.+||++|++ ++|||+++|||||+|+.|+|+.+ +|+++++| ||+.
T Consensus 7 ~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~ 82 (368)
T 1oqy_A 7 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 82 (368)
T ss_dssp CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEE
T ss_pred eEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEe
Confidence 489999999999999999999999999999999 57899999999999999999874 89999998 7764
No 83
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.16 E-value=2.4e-11 Score=103.73 Aligned_cols=65 Identities=9% Similarity=0.104 Sum_probs=57.5
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEe-------CCeeeccCCc----CCCCCCeeeeee
Q 037804 28 VFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTF-------GDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 28 IfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf-------~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
|.-....++.+.+.+++++||++||+||+.++|||+++|||+| .|++|+|+.+ +|+++++||||-
T Consensus 7 iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd 82 (86)
T 4b6w_A 7 LTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVD 82 (86)
T ss_dssp EEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEe
Confidence 3334556778899999999999999999999999999999996 4889999986 999999999985
No 84
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.14 E-value=1.2e-10 Score=101.06 Aligned_cols=69 Identities=9% Similarity=0.188 Sum_probs=65.6
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
..|+|+||+.+|+++.|.|.+++++..||+.++++.|||+++|||+|+|++|.++.| +++++++||++.
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 78 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 78 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 449999999999999999999999999999999999999999999999999999886 899999999974
No 85
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.04 E-value=4e-10 Score=96.83 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=58.5
Q ss_pred eEEEEEeCCCc-EEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCC---ee----eccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGC-VLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGD---LT----LNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk-~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~G---k~----LeDd~t----~I~~dStLHLvR 92 (609)
+.|+|++.... .+.++|++++||.+||++|+.++|||+++|||+|.| +. ++|+.+ +|+++++|||+.
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 77899886553 799999999999999999999999999999999986 43 467764 899999999985
No 86
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.03 E-value=8.3e-10 Score=90.66 Aligned_cols=66 Identities=9% Similarity=0.190 Sum_probs=63.3
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
++|.||+.+|+++.|.|.+++++..|++.++++.|+|+.+|||+|+|++|.++.| +++++++||+.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999998886 89999999985
No 87
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.01 E-value=4.5e-10 Score=94.69 Aligned_cols=66 Identities=17% Similarity=0.329 Sum_probs=58.4
Q ss_pred eEEEEEeCCCcEEEEE-eccCCCHHHHHHHHHHHhCCCCCCcEEEeC--Ceeec---cCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGME-LDRNDNAHTVKRRLQLALNIPTDESSLTFG--DLTLN---NDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~e-Ve~sdTV~~VKqkIqekeGIP~eqQRLIf~--Gk~Le---Dd~t----~I~~dStLHLvR 92 (609)
|+|+||+.+|+.. ++ |++++||.+||++|+++.|||+++|||+|+ +++|. ++.+ ||.++++|||..
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 7899999999765 77 999999999999999999999999999998 48874 3443 899999999975
No 88
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.00 E-value=7.3e-10 Score=99.71 Aligned_cols=70 Identities=11% Similarity=0.165 Sum_probs=60.6
Q ss_pred cCCeEEEEEeCCCc-EEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCC---e---ee-ccCCc----CCCCCCeeee
Q 037804 23 SGTRRVFVQTETGC-VLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGD---L---TL-NNDLS----AIKKDSALLL 90 (609)
Q Consensus 23 sd~~qIfVKTltGk-~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~G---k---~L-eDd~t----~I~~dStLHL 90 (609)
++.+.|+|++..+. .+.++|++++||+.||++|+.++|||+++|||+|.| + +| +|+.+ +|+++++|||
T Consensus 4 ~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 4 TEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp CCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred CCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 45588999987653 799999999999999999999999999999999987 4 34 66664 8999999999
Q ss_pred ee
Q 037804 91 TR 92 (609)
Q Consensus 91 vR 92 (609)
+.
T Consensus 84 vd 85 (122)
T 1t0y_A 84 VD 85 (122)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 89
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.99 E-value=2.4e-09 Score=89.72 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=64.6
Q ss_pred cCCeEEEEEeCCCc-EEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 23 SGTRRVFVQTETGC-VLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 23 sd~~qIfVKTltGk-~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
+..++|.||+.+|+ ++.|.|.+++++..|+..++++.|+++++|||+|+|++|.++.| +++++++||+.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 34599999999997 99999999999999999999999999999999999999999887 99999999974
No 90
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.97 E-value=1.6e-09 Score=93.51 Aligned_cols=69 Identities=9% Similarity=0.188 Sum_probs=65.5
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
..++|.||+.+|+++.|.|.+++++..|++.++++.|+|+.+|||+|+|++|.++.| +++++++||++.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 76 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 76 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 458999999999999999999999999999999999999999999999999998886 899999999975
No 91
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.90 E-value=1.3e-09 Score=112.99 Aligned_cols=66 Identities=14% Similarity=0.260 Sum_probs=60.6
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEE---eCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLT---FGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLI---f~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
+.|.||. +|++++++|++++||+.||++|++++|||+++|+|+ |+|++|+|+.+ +|+++++|||+.
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~g 78 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVG 78 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEc
Confidence 7899996 899999999999999999999999999999999999 89999999874 899999999985
No 92
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.89 E-value=4.8e-09 Score=90.59 Aligned_cols=70 Identities=9% Similarity=0.190 Sum_probs=66.0
Q ss_pred cCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 23 SGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 23 sd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
+..++|.||+.+|+++.|.|.+++++..|+..++++.|+++++|||+|+|++|.++.| +++++++||++.
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~ 88 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 88 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 4569999999999999999999999999999999999999999999999999998886 899999999974
No 93
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.87 E-value=4.8e-09 Score=92.77 Aligned_cols=71 Identities=8% Similarity=0.192 Sum_probs=66.7
Q ss_pred ccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 22 SSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 22 lsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
-...++|+||+.+|+++.|.|.+++++..|+..++++.|+++++|||+|+|++|.++.| +++++++||++.
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 95 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 95 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 34679999999999999999999999999999999999999999999999999998886 899999999974
No 94
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.83 E-value=5.6e-09 Score=93.41 Aligned_cols=71 Identities=8% Similarity=0.113 Sum_probs=66.9
Q ss_pred ccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 22 SSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 22 lsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
-+..++|+||+.+|+++.|.|.+++++..|+..++++.|+|+++|||+|+|++|.++.| +++++++||++.
T Consensus 23 ~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~ 97 (110)
T 2k8h_A 23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMV 97 (110)
T ss_dssp CCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEEC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 34569999999999999999999999999999999999999999999999999999886 899999999974
No 95
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.81 E-value=1e-08 Score=91.18 Aligned_cols=70 Identities=6% Similarity=0.120 Sum_probs=65.5
Q ss_pred ccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 22 SSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 22 lsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
-+..++|+||+ +|+++.|.|.+++++..|+..++++.|+++.+|||+|+|++|.++.| +++++++||++.
T Consensus 28 ~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~ 101 (106)
T 2eke_C 28 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 101 (106)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEe
Confidence 34569999999 99999999999999999999999999999999999999999998886 899999999964
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.45 E-value=3.5e-07 Score=78.55 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=60.2
Q ss_pred ccCCeEEEEEe---CCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCC-------eeeccCC-c----CCCCCC
Q 037804 22 SSGTRRVFVQT---ETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGD-------LTLNNDL-S----AIKKDS 86 (609)
Q Consensus 22 lsd~~qIfVKT---ltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~G-------k~LeDd~-t----~I~~dS 86 (609)
-++.+.|+|++ .+|..+...+..+.||++||.+|+..+|+|+..|+|.|.+ ..|.||. + +|++++
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred cCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 45668898986 5899999999999999999999999999999999999873 2254544 3 999999
Q ss_pred eeeeee
Q 037804 87 ALLLTR 92 (609)
Q Consensus 87 tLHLvR 92 (609)
+||++.
T Consensus 86 ~I~V~d 91 (97)
T 1wjn_A 86 CLLVRW 91 (97)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999974
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.28 E-value=3.1e-06 Score=76.49 Aligned_cols=70 Identities=6% Similarity=0.167 Sum_probs=65.4
Q ss_pred cCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 23 SGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 23 sd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
.+.++|.|++.+|+.+.|.|.+++++..|+...+++.|++..++||+|+|++|.++.| +++++.+|+++.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 3568999999999999999999999999999999999999999999999999998876 899999999965
No 98
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.23 E-value=2.1e-06 Score=75.05 Aligned_cols=59 Identities=7% Similarity=0.085 Sum_probs=48.4
Q ss_pred CCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccC--Cc-----CCCCCCeeeee
Q 037804 33 ETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNND--LS-----AIKKDSALLLT 91 (609)
Q Consensus 33 ltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd--~t-----~I~~dStLHLv 91 (609)
.++..+.+.|++++||..+|++|++++|||+++|+|+|+|++|.=+ .. .-..+++|-|+
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~ 86 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 86 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence 3788999999999999999999999999999999999999988532 21 33455666663
No 99
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.08 E-value=9.5e-06 Score=79.50 Aligned_cols=70 Identities=6% Similarity=0.133 Sum_probs=65.5
Q ss_pred ccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 22 SSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 22 lsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
..+.++|.|+ .+|+++.|.|.+++++..|+...+++.|+|..++|++|+|++|.++.| +++++++||++.
T Consensus 26 ~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~ 99 (200)
T 3pge_A 26 PETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 99 (200)
T ss_dssp CCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 4667999998 599999999999999999999999999999999999999999999886 899999999975
No 100
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.82 E-value=3.7e-05 Score=75.33 Aligned_cols=70 Identities=6% Similarity=0.142 Sum_probs=64.4
Q ss_pred ccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 22 SSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 22 lsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
..+-++|.|+ .+|+++.|.|.+++++..|+....++.|+++.++|++|+|++|.++.| +++++++|+++.
T Consensus 54 p~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~l 127 (207)
T 3tix_A 54 PETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHR 127 (207)
T ss_dssp -CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECC
T ss_pred CCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 3556899997 599999999999999999999999999999999999999999998886 899999999964
No 101
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.42 E-value=2e-05 Score=78.00 Aligned_cols=73 Identities=7% Similarity=0.145 Sum_probs=0.0
Q ss_pred cccccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 19 GAKSSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 19 ~~rlsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
+-...+-|+|.| +.+|+++.|.|.+++.+..|+....++.|+++.++|++|+|++|.++.| +++++++|+++.
T Consensus 15 ~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~l 91 (227)
T 3v7o_A 15 EVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (227)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEe
Confidence 334567799999 8999999999999999999999999999999999999999999998886 899999999964
No 102
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.38 E-value=0.00061 Score=66.49 Aligned_cols=73 Identities=7% Similarity=0.127 Sum_probs=64.4
Q ss_pred cccccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 19 GAKSSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 19 ~~rlsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
+-..++.+.|.|++ +|+.+.|.|.+++....|+...+++.|++..++|++|.|+.+.++.+ .++++.+|++.+
T Consensus 15 ~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~ 91 (209)
T 3uf8_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (209)
T ss_dssp ---CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred eeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhc
Confidence 34456678999998 89999999999999999999999999999999999999999988775 788999999975
No 103
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.29 E-value=0.00016 Score=60.77 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=53.6
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCee---e--ccCCc----CCCCCCeeeee
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLT---L--NNDLS----AIKKDSALLLT 91 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~---L--eDd~t----~I~~dStLHLv 91 (609)
.|.|-||+.+| +..++|++++||.+||++|+++.+++.+.|.|.++-.. | ..+.+ ||.+|++|+|.
T Consensus 4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 37788999998 88899999999999999999999999999988777543 3 23322 78888888874
No 104
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=97.25 E-value=0.00022 Score=74.88 Aligned_cols=142 Identities=16% Similarity=0.135 Sum_probs=81.4
Q ss_pred cccCCcceEEEEEeCCCCEEEEEecCCCCCCCCCCCCCcCCcccCCCCCCCccccCcchhhhhhhhhhccCCCCCCCCee
Q 037804 151 PIHGGLGGAYYFKNSKGEHVAIVKPTDEEPFAPNNPKGFAGKALGQPGLKRSVRVGETGFREVAAYLLDYDHFAKVPPTV 230 (609)
Q Consensus 151 ~i~~GsgGsYf~~~~~G~~vaVFKP~DEEP~a~nNPk~~~~r~~g~~gf~rg~lvGe~a~REvAAYLLD~~gf~~VP~T~ 230 (609)
++..|++|.|||+.. ....|.|+.. . -..|+=||.|-...=--+|...
T Consensus 76 ~s~~Gstgvff~~td--~~~~VVK~s~-------------------------~-----l~~E~l~s~LA~~LGlpiP~~R 123 (342)
T 1cja_A 76 RSEKGTEGLFFVETE--SGVFIVKRST-------------------------N-----IESETFCSLLCMRLGLHAPKVR 123 (342)
T ss_dssp ECCSTTSCEEEEEES--SCEEEEECCT-------------------------T-----HHHHHHHHHHHHHHTCCCCCEE
T ss_pred eccCCCCCeEEEEeC--CCEEEEeCcH-------------------------H-----HHHHHHHHHHHHHhCCCCCCee
Confidence 667899999999982 3477777541 1 1566667766654224589999
Q ss_pred EEEeeccccccC-cccccccccCC---CCCCc-cceeeeccCCCCCCCCCC----CCCCChh---hHhhhcccceEeecC
Q 037804 231 LVKVRHSIFNLN-DGMIGNKLQNG---KKVSK-IASLQQFVPHDFDASDHG----TSSFPVA---AIHRIGILDIRIFNT 298 (609)
Q Consensus 231 lV~~~hp~F~~~-~~~~g~~~~~~---~~~~K-iGSlQ~FV~~~~~a~d~g----~~~F~v~---evhkIaILDiri~Nt 298 (609)
++++..+.|.-- ....-...... .+..+ ..=++.||++..-. ++. ...|... ++-||.+||+.++|.
T Consensus 124 iv~~~~~E~~e~~~~L~~~~~~~~~l~~l~~~~~~l~meyv~G~~L~-e~~~~~~~~~f~~~~~k~LG~Ii~FDi~InN~ 202 (342)
T 1cja_A 124 VVSSNSEEGTNMLECLAAIDKSFRVITTLANQANILLMELVRGITLN-KLTTTSAPEVLTKSTMQQLGSLMALDVIVNNS 202 (342)
T ss_dssp EEESSSHHHHHHHHHHHHHCSSSCHHHHHTTCSEEEEEECCCEEEST-TCCSSSHHHHSCHHHHHHHHHHHHHHHHHTCC
T ss_pred EEeeCcHHHHHHHHHHHHhhhhhHHHHHhhcccceehhhhcCCCccc-cchhhhhhhhcCHHHHHhhchhheehhhhcCC
Confidence 998775433100 00000000000 00011 11346777643211 111 1224333 344799999999999
Q ss_pred CCC------C---CceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 299 DRH------A---GNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 299 DRh------~---GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
||- . +|||+... . + .+++|||++||-.
T Consensus 203 DR~Pl~W~n~GN~~NIL~~~~--n---~--~~~~IDhn~af~~ 238 (342)
T 1cja_A 203 DRLPIAWTNEGNLDNIMLSER--G---A--TVVPIDSKIIPLD 238 (342)
T ss_dssp SSSCSSSCSCCCGGGEEEESB--T---T--CEEECSCCCCCCC
T ss_pred ccCcccccCCCChhheEEeCC--C---C--eEEEEcCCccccC
Confidence 997 3 36788762 1 1 6999999999986
No 105
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.51 E-value=0.00041 Score=73.35 Aligned_cols=70 Identities=6% Similarity=0.120 Sum_probs=0.0
Q ss_pred ccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 22 SSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 22 lsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
.+.-+.|.|++ +|+++.|.|.++++...|+...+++.|++++++|++|+|++|.++.| +++++++|+++.
T Consensus 18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~ 91 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (360)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhh
Confidence 56778999998 79999999999999999999999999999999999999999998886 899999999964
No 106
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.44 E-value=0.017 Score=50.54 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=61.8
Q ss_pred ccCCeEEEEEeCCCc-EEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeee
Q 037804 22 SSGTRRVFVQTETGC-VLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLL 90 (609)
Q Consensus 22 lsd~~qIfVKTltGk-~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHL 90 (609)
-.+.+.|.|+..+|+ .+.|.|.++.+...|.....++.|+++..-|++|+|.+|..+.| +++++.+|.+
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv 95 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEV 95 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 345588999999995 89999999999999999999999999999999999999988886 8999988865
No 107
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.06 E-value=0.001 Score=69.86 Aligned_cols=70 Identities=6% Similarity=0.118 Sum_probs=0.0
Q ss_pred ccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 22 SSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 22 lsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
..+.+.|.|++ +|.++.|.|.++++...|++...++.|+++.++|++|+|++|.++.| +++++.+|+++.
T Consensus 27 ~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~ 100 (389)
T 4da1_A 27 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHR 100 (389)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeee
Confidence 45668899998 89999999999999999999999999999999999999999998886 899999999964
No 108
>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB: 3akk_A* 3akl_A*
Probab=95.92 E-value=0.0019 Score=66.82 Aligned_cols=49 Identities=24% Similarity=0.319 Sum_probs=37.5
Q ss_pred hhHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEe-ecccccCcccC
Q 037804 283 AAIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIP-IDHGLCLPESL 334 (609)
Q Consensus 283 ~evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~Lvp-IDHGLcfP~~~ 334 (609)
.++-++.|||++|.|+|||..||=+-.. +..|.+.|.| .|||.++...+
T Consensus 139 ~~~~~~~vfn~LIgN~D~H~kN~s~l~~---~~tg~~~LAP~YD~~~s~~~~~ 188 (325)
T 3akj_A 139 CFFWDMFVADTLLGNFDRHNGNWGFLRA---SNSKEYQIAPIFDCGSCLYPQA 188 (325)
T ss_dssp HHHHHHHHHHHHHTCSCCCGGGCEEEEE---SSSSCEEECCBCCCTTSSCTTC
T ss_pred HHHHHHHHhhHhhcCCCCCCcCeEEEEE---CCCCCEEecCcccccccccccC
Confidence 4466999999999999999999955542 1224588998 59999886544
No 109
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.66 E-value=0.027 Score=51.68 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=35.9
Q ss_pred EEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCC
Q 037804 27 RVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTD 64 (609)
Q Consensus 27 qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~e 64 (609)
-+.|+.++|...++.|+.+.||..++..|..+.||+..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 69999999999999999999999999999999999844
No 110
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.65 E-value=0.044 Score=47.62 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=61.4
Q ss_pred cCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCC----cCCCCCCeeeeee
Q 037804 23 SGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDL----SAIKKDSALLLTR 92 (609)
Q Consensus 23 sd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~----t~I~~dStLHLvR 92 (609)
+++|.|.|-..+|+..++.|.++.++.+|=++--+++|+.+++-.|.|+++.|+-.. +|+.+++.|-|+.
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP 80 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEE
Confidence 356899999999999999999999999998888888999988889999999996665 3999999999985
No 111
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=94.83 E-value=0.15 Score=44.73 Aligned_cols=66 Identities=11% Similarity=0.156 Sum_probs=61.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHLvR 92 (609)
+.|.|+. .|..+.|.|.++...+.|..-..++.|+++..-|++|+|+.+..+.| +++++.+|..++
T Consensus 22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 7788885 89999999999999999999999999999999999999999999887 899999998864
No 112
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=94.42 E-value=0.24 Score=42.33 Aligned_cols=67 Identities=9% Similarity=0.142 Sum_probs=58.7
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCC-CcEEEeCCeeeccCCc----CCCCCCeeeee
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTD-ESSLTFGDLTLNNDLS----AIKKDSALLLT 91 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~e-qQRLIf~Gk~LeDd~t----~I~~dStLHLv 91 (609)
++.+.+++.....+.|.|.++.+|..|=..-.++.|||+. .-||+|.|.+|..+.+ .++++..|..+
T Consensus 9 ~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 9 LITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred HHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 4678889988899999999999999998888899999998 7899999999987765 78888877664
No 113
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=82.49 E-value=0.76 Score=51.74 Aligned_cols=40 Identities=33% Similarity=0.429 Sum_probs=33.6
Q ss_pred HhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 285 IHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 285 vhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
.--.+|.=|++.=.|||.+|||+.. +|+ ++.||=|.||-.
T Consensus 464 ~A~ySvv~YILGigDRH~~NILld~---tG~-----v~HIDFG~~f~~ 503 (614)
T 3ls8_A 464 CAGYCVITYILGVGDRHLDNLLLTK---TGK-----LFHIDFGYILGR 503 (614)
T ss_dssp HHHHHHHHHHHTCCCCCTTSEEECT---TSC-----EEECCCSSCTTC
T ss_pred HHHHhHhheeeeccCCCCcceeEcC---CCC-----EeeeehHHhhcc
Confidence 3466788889999999999999974 555 999999999964
No 114
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=82.03 E-value=4.5 Score=33.42 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=50.5
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEe--CCeeec--c-CCc----CCCCCCeeee
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTF--GDLTLN--N-DLS----AIKKDSALLL 90 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf--~Gk~Le--D-d~t----~I~~dStLHL 90 (609)
--+|-||..+|+.+.-....++||..|..-|.. .+.+.....|+- -.+.|. | +.+ ++.+.++|++
T Consensus 7 ~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~v 80 (84)
T 3qx1_A 7 VSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFL 80 (84)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEE
Confidence 367999999999999999999999999999987 677767778874 367784 2 223 6766777766
No 115
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=75.30 E-value=2.1 Score=38.97 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=30.3
Q ss_pred EEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEE
Q 037804 37 VLGMELDRNDNAHTVKRRLQLALNIPTDESSLT 69 (609)
Q Consensus 37 ~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLI 69 (609)
..+|.|-.+.|+.++|.+|++.+|+|+++|||-
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW 89 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 89 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEE
Confidence 456889999999999999999999999999995
No 116
>3tpd_A Serine/threonine-protein kinase HIPA; persistence, multidrug tolerance, HIPB, transferase; 1.50A {Escherichia coli} PDB: 3tpe_A* 3tpv_B* 3tpt_A* 3hzi_A* 2wiu_A 3tpb_A 3dnu_A 3dnt_A 3dnv_A* 3fbr_A*
Probab=74.90 E-value=3.1 Score=44.24 Aligned_cols=38 Identities=26% Similarity=0.233 Sum_probs=29.5
Q ss_pred hhHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEee
Q 037804 283 AAIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPI 324 (609)
Q Consensus 283 ~evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpI 324 (609)
.++-|..||.+++.|+|.|+.|+=+-.. ..|.++|.|.
T Consensus 293 ~~~~rr~vfn~ligN~D~H~KN~s~l~~----~~g~~~LaPa 330 (440)
T 3tpd_A 293 YDFMKFQVFQWLIGATDGHAKNFSVFIQ----AGGSYRLTPF 330 (440)
T ss_dssp HHHHHHHHHHHHTTCCCCCGGGCEEEEC----GGGCEEECCC
T ss_pred HHHHHHHHhhHhhcCCcCCccceEEEEc----CCCceEECch
Confidence 3445778999999999999999987662 2355778887
No 117
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=71.62 E-value=24 Score=30.72 Aligned_cols=68 Identities=7% Similarity=0.085 Sum_probs=53.6
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEe--CCeeecc---CCc----CCCCCCeeeeee
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTF--GDLTLNN---DLS----AIKKDSALLLTR 92 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf--~Gk~LeD---d~t----~I~~dStLHLvR 92 (609)
--+|-||..+|+.+.-....++||.+|.+-|....+.+...-.|+- --+.|.+ +.+ ++.+.++|++..
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 4789999999999999999999999999999988777666667763 4666752 223 777778888853
No 118
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=69.81 E-value=1.8 Score=50.98 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=31.7
Q ss_pred hhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 287 RIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 287 kIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
-.+|.=|++.=.|||.+|||+.. +|+ ++.||=|.||-.
T Consensus 777 ~~Svv~YILGlgDRH~~NILid~---tG~-----v~HIDFG~~f~~ 814 (940)
T 2wxf_A 777 GYCVATYVLGIGDRHSDNIMIRE---SGQ-----LFHIDFGHFLGN 814 (940)
T ss_dssp HHHHHHHHHTCCCCCGGGEEEET---TSC-----EEECCCCCCTTC
T ss_pred HHHHHHHHhccCCCCcccEEEec---CCC-----EEEEeehhhhcc
Confidence 45667778888999999999985 555 999999999954
No 119
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=68.26 E-value=2 Score=50.72 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=29.4
Q ss_pred hhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 287 RIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 287 kIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
-.+|.=|++.=.|||.+|||+.. +|+ ++.||=|.||-.
T Consensus 793 ~ySvv~YILGigDRH~~NILid~---tG~-----v~HIDFG~~f~~ 830 (961)
T 1e7u_A 793 GYCVATFVLGIGDRHNDNIMISE---TGN-----LFHIDFGHILGN 830 (961)
T ss_dssp HHHHHHHHTTCCCCCGGGEEEET---TCC-----EEECCCCCC---
T ss_pred HHHHHHHHccccCCCCcceEEec---CCC-----EEEEeehhhhcc
Confidence 45566677778999999999985 555 999999999954
No 120
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=67.37 E-value=2.3 Score=50.87 Aligned_cols=37 Identities=32% Similarity=0.473 Sum_probs=29.4
Q ss_pred hcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 288 IGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 288 IaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
.+|.=|++.=.|||.+|||+.. +|+ ++.||=|.||-.
T Consensus 930 ySvv~YILGlGDRH~~NILid~---tG~-----v~HIDFG~~f~~ 966 (1092)
T 2y3a_A 930 YCVASYVLGIGDRHSDNIMVKK---TGQ-----LFHIDFGHILGN 966 (1092)
T ss_dssp HHHHHHHTTCCCCCTTTEEECT---TSC-----EEECCCSCCSSC
T ss_pred HHHHHHHhcCCCCCCccEEEec---CCC-----EEEEeehhhhhc
Confidence 4455566666899999999975 555 999999999953
No 121
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=67.00 E-value=22 Score=31.81 Aligned_cols=68 Identities=12% Similarity=0.245 Sum_probs=52.5
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEE--eCCeeec--c-CCc----CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLT--FGDLTLN--N-DLS----AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLI--f~Gk~Le--D-d~t----~I~~dStLHLvR 92 (609)
+-.+|-||..+|+.+.-....++||.+|..-|... +.+...-.|+ |=-+.|. | +.+ ++.+.++|++.+
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 34889999999999999999999999999999776 7666666776 3477783 3 233 666677777764
No 122
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=65.85 E-value=13 Score=31.64 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=39.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCC
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGD 72 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~G 72 (609)
+.|.|.- --++.|.|-++-+..+|..+|.+++++|++.-.|-|.+
T Consensus 6 ~~VKV~~--~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHY--KYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEES--SSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEE--EEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 4555554 47999999999999999999999999998888999985
No 123
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=64.66 E-value=20 Score=32.09 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=38.4
Q ss_pred CCcEEEEEeccCCCHHHHHHHHHHH--hCCCC------CCcEEEeC----CeeeccCC-c----------------CCCC
Q 037804 34 TGCVLGMELDRNDNAHTVKRRLQLA--LNIPT------DESSLTFG----DLTLNNDL-S----------------AIKK 84 (609)
Q Consensus 34 tGk~~~~eVe~sdTV~~VKqkIqek--eGIP~------eqQRLIf~----Gk~LeDd~-t----------------~I~~ 84 (609)
.+..+.+.|-.+|||..||+||-+. .|.|. ++..|-+. |+.|.|.. + +|.+
T Consensus 22 ~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 22 GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 3556888899999999999999887 46653 34456553 56665532 1 5667
Q ss_pred CCeeeeee
Q 037804 85 DSALLLTR 92 (609)
Q Consensus 85 dStLHLvR 92 (609)
+++|-|+.
T Consensus 102 gatl~l~~ 109 (111)
T 4e71_A 102 GATLILSK 109 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 77777653
No 124
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=60.01 E-value=25 Score=32.65 Aligned_cols=57 Identities=9% Similarity=0.148 Sum_probs=40.1
Q ss_pred cEEEEEeccCCCHHHHHHHHHHH--hCCCCCC------cEEEeC----Cee-eccCC-------------c----CCCCC
Q 037804 36 CVLGMELDRNDNAHTVKRRLQLA--LNIPTDE------SSLTFG----DLT-LNNDL-------------S----AIKKD 85 (609)
Q Consensus 36 k~~~~eVe~sdTV~~VKqkIqek--eGIP~eq------QRLIf~----Gk~-LeDd~-------------t----~I~~d 85 (609)
..+.+.|=-+|||..||+||-+. -|+|..+ -.|-+. |+. |.|.. | +|.++
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 56899999999999999999988 5776432 233331 432 54432 1 78899
Q ss_pred Ceeeeee
Q 037804 86 SALLLTR 92 (609)
Q Consensus 86 StLHLvR 92 (609)
++|-|+.
T Consensus 121 a~l~l~~ 127 (138)
T 2r2o_A 121 ATVALVP 127 (138)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9999975
No 125
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=59.45 E-value=2.6 Score=48.13 Aligned_cols=41 Identities=29% Similarity=0.417 Sum_probs=34.3
Q ss_pred hHhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 284 AIHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 284 evhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
..--.+|.=|++.=.|||.+||||.. +|+ ++.||=|.||-.
T Consensus 537 SlA~~Svv~YILGlGDRH~~NILid~---tG~-----v~HIDFG~~f~~ 577 (696)
T 2x6h_A 537 SCAGYCVITYLLGVGDRHLDNLLLTT---NGK-----LFHIDFGYILGR 577 (696)
T ss_dssp HHHHHHHHHHHHTCCCCCTTTEEECT---TSC-----EEECCCCSCTTC
T ss_pred HHHHHHHHHHHccCCCCCCcceEEeC---CCC-----EEEEeehhhhcc
Confidence 34467788899999999999999974 555 999999999964
No 126
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=58.25 E-value=3.1 Score=49.76 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=34.0
Q ss_pred HhhhcccceEeecCCCCCCceEEEecCCCCCCcceEEEeecccccCcc
Q 037804 285 IHRIGILDIRIFNTDRHAGNLLVRKLDGGGRFGQVELIPIDHGLCLPE 332 (609)
Q Consensus 285 vhkIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~LvpIDHGLcfP~ 332 (609)
.--.+|.=|++.=.|||.+|||+.+ +|+ ++.||=|.||-.
T Consensus 924 ~A~ysvv~YiLgigDRH~~NILid~---tG~-----v~HIDFG~~f~~ 963 (1091)
T 3hhm_A 924 CAGYCVATFILGIGDRHNSNIMVKD---DGQ-----LFHIDFGHFLDH 963 (1091)
T ss_dssp HHHHHHHHHHHTCCCCCTTTEEEET---TSC-----EEECCCCCCSCC
T ss_pred hhhhhheEEEEeecCCCCcceEEeC---CCC-----EEEEeehhhhcc
Confidence 3466788899999999999999986 555 999999999964
No 127
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=56.41 E-value=12 Score=38.07 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=37.6
Q ss_pred CCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeee
Q 037804 34 TGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTL 75 (609)
Q Consensus 34 tGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~L 75 (609)
.-....+.+.+..|+..++++|++..+|++++|.|+|.+..+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~ 361 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRL 361 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEE
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCC
Confidence 556678899999999999999999999999999999998544
No 128
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=56.40 E-value=34 Score=27.96 Aligned_cols=61 Identities=13% Similarity=0.149 Sum_probs=44.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCcCCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLSAIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t~I~~dStLHLvR 92 (609)
|+|.||-.+.+...+++....||.+|= +++|+|++.=-...+|+.+..+.. + ++..|-+++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~~-l-~GD~VeIv~ 61 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQS-V-EVDRVKVLR 61 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTSS-S-CCCCEEECS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHHC-C-CCCEEEEEE
Confidence 788898875556678999999998764 459999877666677887765543 3 466666653
No 129
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=55.22 E-value=45 Score=30.56 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=41.7
Q ss_pred CCcEEEEEeccCCCHHHHHHHHHHH--hCCCC------CCcEEEeC----Cee-eccCC-c----------------CCC
Q 037804 34 TGCVLGMELDRNDNAHTVKRRLQLA--LNIPT------DESSLTFG----DLT-LNNDL-S----------------AIK 83 (609)
Q Consensus 34 tGk~~~~eVe~sdTV~~VKqkIqek--eGIP~------eqQRLIf~----Gk~-LeDd~-t----------------~I~ 83 (609)
.+..+.+.|-.+|||.+||+||-+. .|+|. ++..|-+. |+. |.|.. + +|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4567888899999999999999887 46654 45566552 443 54422 1 678
Q ss_pred CCCeeeeee
Q 037804 84 KDSALLLTR 92 (609)
Q Consensus 84 ~dStLHLvR 92 (609)
++++|-|+.
T Consensus 95 dgatv~l~~ 103 (127)
T 3h6n_A 95 EGASLAMSL 103 (127)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 888888864
No 130
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=54.69 E-value=43 Score=29.36 Aligned_cols=72 Identities=22% Similarity=0.231 Sum_probs=51.3
Q ss_pred cccCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCc-EEE------eCCeeeccCCc--------CCCCC
Q 037804 21 KSSGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDES-SLT------FGDLTLNNDLS--------AIKKD 85 (609)
Q Consensus 21 rlsd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQ-RLI------f~Gk~LeDd~t--------~I~~d 85 (609)
+++.-.-|.|=..+|...+|.|+.++|+.+|=+++.+|.+...+.- .|+ +-.+.++|+.. .+..+
T Consensus 5 ~~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~ 84 (100)
T 1wgr_A 5 SSGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGD 84 (100)
T ss_dssp CCCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSC
T ss_pred ccCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCC
Confidence 3445566777789999999999999999999999999977654433 222 12466677663 46667
Q ss_pred Ceeeeee
Q 037804 86 SALLLTR 92 (609)
Q Consensus 86 StLHLvR 92 (609)
+.+.+.+
T Consensus 85 nr~~F~k 91 (100)
T 1wgr_A 85 SRFVFRK 91 (100)
T ss_dssp CEEEECS
T ss_pred cEEEEec
Confidence 7777754
No 131
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=54.69 E-value=42 Score=29.07 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=51.7
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEE--eCCeeeccC--Cc----CCCCCCeeeeee
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLT--FGDLTLNND--LS----AIKKDSALLLTR 92 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLI--f~Gk~LeDd--~t----~I~~dStLHLvR 92 (609)
+-.+|-||..+|+.+.-....++||..|..=|... +.....-+|+ |=-+.|..+ .+ ++.+.++|++..
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 34789999999999999999999999999988864 4444556676 337778633 33 888888887753
No 132
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=53.64 E-value=0.078 Score=46.76 Aligned_cols=32 Identities=13% Similarity=0.020 Sum_probs=29.0
Q ss_pred ccccccCCeEEEEE---eCCCcEEEEEeccCCCHH
Q 037804 18 LGAKSSGTRRVFVQ---TETGCVLGMELDRNDNAH 49 (609)
Q Consensus 18 ~~~rlsd~~qIfVK---TltGk~~~~eVe~sdTV~ 49 (609)
+..|+.|+++|||+ +++|++++++|++++||+
T Consensus 78 l~~~~~GG~~~~~~~~~~~~g~~~~~~v~~~~~~~ 112 (114)
T 2kdi_A 78 LVLRLRGGSMGGAADEEELIRKAIELSLKESRNSG 112 (114)
T ss_dssp EEECCCSSCCCSSCSSSHHHHHHHHSSSHHHHHGG
T ss_pred EEEEcCCCceeeccccccccCceEEEEeccccccC
Confidence 66788999999999 889999999999999886
No 133
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=53.31 E-value=24 Score=34.16 Aligned_cols=58 Identities=19% Similarity=0.372 Sum_probs=44.5
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHhCCCCC-CcEEE--eC---CeeeccC-Cc----CCCCCCeeee-eec
Q 037804 36 CVLGMELDRNDNAHTVKRRLQLALNIPTD-ESSLT--FG---DLTLNND-LS----AIKKDSALLL-TRN 93 (609)
Q Consensus 36 k~~~~eVe~sdTV~~VKqkIqekeGIP~e-qQRLI--f~---Gk~LeDd-~t----~I~~dStLHL-vRn 93 (609)
..+++.+.+.+||.+|++++.+.++||.+ +-||- +. ...|+|. .+ ++.++..|-| +|+
T Consensus 140 ~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 140 NVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred cceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 34778899999999999999999999987 56883 32 2345553 33 8899998888 764
No 134
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=53.14 E-value=23 Score=36.35 Aligned_cols=95 Identities=12% Similarity=0.190 Sum_probs=63.0
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHhC----CCCCCcEEEe------CCeeeccCCc----CCCCCCeeeeeecccCCCCC
Q 037804 35 GCVLGMELDRNDNAHTVKRRLQLALN----IPTDESSLTF------GDLTLNNDLS----AIKKDSALLLTRNAMHRSSS 100 (609)
Q Consensus 35 Gk~~~~eVe~sdTV~~VKqkIqekeG----IP~eqQRLIf------~Gk~LeDd~t----~I~~dStLHLvRn~ihRSSs 100 (609)
+-+-+++++++.||.++-.+|.++.. .+.++--|.. .|+.|+++++ +++++..|+..+ .++..+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~--~~~~~~ 89 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK--KQRPLK 89 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE--CEEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC--ceeEEE
Confidence 77788999999999999999988853 2456667876 2677888775 899999999965 333333
Q ss_pred CCccCCCCCCcccccCCCCeeecCCCCCchHHHHHHHHHHHHHH
Q 037804 101 SPCLSPVGKNHQQRDMSGPIEILGHLSSYSRTNELVKEIVEGIK 144 (609)
Q Consensus 101 tP~~s~~~~d~~~~~~~~~ie~~~~~~~~~~~~~lv~~v~~ai~ 144 (609)
+-.. ++-.+.+.. +.....+++++.|..-+.
T Consensus 90 V~l~------------dg~~~~~~v-d~~tt~~el~~~v~~~l~ 120 (371)
T 3ivf_A 90 IRML------------DGTVKTIMV-DDSKTVTDMLMTICARIG 120 (371)
T ss_dssp EECT------------TSCEEEEEE-ETTSBHHHHHHHHHHHTT
T ss_pred EECc------------CCCEEEEEE-CCCCCHHHHHHHHHHHcC
Confidence 3332 111222111 123456778887766553
No 135
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=50.52 E-value=33 Score=33.57 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=43.8
Q ss_pred EEEEEeccCCCHHHHHHHHHHHhCCCCC-CcEEEe-C----CeeeccC-Cc----CCCCCCeeee-eec
Q 037804 37 VLGMELDRNDNAHTVKRRLQLALNIPTD-ESSLTF-G----DLTLNND-LS----AIKKDSALLL-TRN 93 (609)
Q Consensus 37 ~~~~eVe~sdTV~~VKqkIqekeGIP~e-qQRLIf-~----Gk~LeDd-~t----~I~~dStLHL-vRn 93 (609)
.+++.+.+.+||.+|++++.+.++|+.+ +-||-. . -..|.|. .+ ++.++.+|-+ +|+
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 4678889999999999999999999987 578843 3 3456553 33 7888888888 663
No 136
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=47.34 E-value=12 Score=41.17 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=30.0
Q ss_pred EEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEE
Q 037804 37 VLGMELDRNDNAHTVKRRLQLALNIPTDESSLT 69 (609)
Q Consensus 37 ~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLI 69 (609)
...+.|....|+.++|++|++.+|+|+++|||-
T Consensus 37 ~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 37 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred cceEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 346889999999999999999999999999993
No 137
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=41.11 E-value=1.4e+02 Score=24.87 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=27.5
Q ss_pred cCCeEEEEEeC------CC-cEEEEEeccCCCHHHHHHHHHHHh
Q 037804 23 SGTRRVFVQTE------TG-CVLGMELDRNDNAHTVKRRLQLAL 59 (609)
Q Consensus 23 sd~~qIfVKTl------tG-k~~~~eVe~sdTV~~VKqkIqeke 59 (609)
.+-|+|.||-- .| +...+++....||.+|.+.+..+.
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~ 50 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRH 50 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHC
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHC
Confidence 35588888842 45 477888888899999999998874
No 138
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=39.48 E-value=77 Score=28.26 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=42.8
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHh-CCCCCCcEEEe--CCeeeccC
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLAL-NIPTDESSLTF--GDLTLNND 78 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqeke-GIP~eqQRLIf--~Gk~LeDd 78 (609)
-.+|-||..+|+.+.-....++||.+|.+-|.... +.....-.|+- --+.|.|+
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~ 108 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADE 108 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCST
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCC
Confidence 37899999999999999999999999999998863 34445567764 47777653
No 139
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=39.25 E-value=72 Score=27.33 Aligned_cols=47 Identities=9% Similarity=0.101 Sum_probs=38.2
Q ss_pred EEEEEeC-CCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCc-EEEeCCe
Q 037804 27 RVFVQTE-TGCVLGMELDRNDNAHTVKRRLQLALNIPTDES-SLTFGDL 73 (609)
Q Consensus 27 qIfVKTl-tGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQ-RLIf~Gk 73 (609)
+|.||.. .|..+.+.|+++.|-.+|.++|++..+++.++. .|-|.|.
T Consensus 6 ~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 6 QVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp CEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred eEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 3667744 689999999999999999999999999986553 5667664
No 140
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=38.02 E-value=79 Score=27.99 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=49.5
Q ss_pred eEEEEEeCCC---cEEEEEeccCCCHHHHHHHHHHHhCCCCC--CcEEEeCC--eeecc-----CCcCCCCCCeeeeeec
Q 037804 26 RRVFVQTETG---CVLGMELDRNDNAHTVKRRLQLALNIPTD--ESSLTFGD--LTLNN-----DLSAIKKDSALLLTRN 93 (609)
Q Consensus 26 ~qIfVKTltG---k~~~~eVe~sdTV~~VKqkIqekeGIP~e--qQRLIf~G--k~LeD-----d~t~I~~dStLHLvRn 93 (609)
..|+|...+. ...++.|....-|+-|-.||-++.+++-+ +.-|-.-. +-|-- |+|+|+.|+.||++.
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp- 98 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP- 98 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE-
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC-
Confidence 4599998775 67899998889999999999999888643 22333321 12221 124999999999975
Q ss_pred ccCC
Q 037804 94 AMHR 97 (609)
Q Consensus 94 ~ihR 97 (609)
+||
T Consensus 99 -~hk 101 (102)
T 2kmc_A 99 -QHK 101 (102)
T ss_dssp -CCC
T ss_pred -CCC
Confidence 454
No 141
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=37.22 E-value=73 Score=26.79 Aligned_cols=64 Identities=13% Similarity=0.103 Sum_probs=45.5
Q ss_pred eEEEEEe--CCCcEEEEEeccCCCHHHHHHHHHHHhCCCCC-----CcEEEeCCeeeccCC----cCCCCCCeee
Q 037804 26 RRVFVQT--ETGCVLGMELDRNDNAHTVKRRLQLALNIPTD-----ESSLTFGDLTLNNDL----SAIKKDSALL 89 (609)
Q Consensus 26 ~qIfVKT--ltGk~~~~eVe~sdTV~~VKqkIqekeGIP~e-----qQRLIf~Gk~LeDd~----t~I~~dStLH 89 (609)
+.|+|.- -.|+++-+.+....||..|++-+.+.++++.. +-|+.-.+..|.++. ++|.+|+.|-
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Le 79 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLE 79 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEE
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEE
Confidence 3455553 48999999999999999999999999888642 124444455555444 2688888764
No 142
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=36.98 E-value=1e+02 Score=27.72 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=39.2
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHH--hCCCCC------CcEEEeC----Cee-eccC-Cc----------------CCCC
Q 037804 35 GCVLGMELDRNDNAHTVKRRLQLA--LNIPTD------ESSLTFG----DLT-LNND-LS----------------AIKK 84 (609)
Q Consensus 35 Gk~~~~eVe~sdTV~~VKqkIqek--eGIP~e------qQRLIf~----Gk~-LeDd-~t----------------~I~~ 84 (609)
...+.+.|-.+|||..||+||-+. .|.|.. +..|-+. |+. |.|. .+ +|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 345888898999999999999887 466643 4455542 332 4442 21 6777
Q ss_pred CCeeeeee
Q 037804 85 DSALLLTR 92 (609)
Q Consensus 85 dStLHLvR 92 (609)
+++|-|+.
T Consensus 106 gatl~l~~ 113 (117)
T 4e74_A 106 GSVVALVS 113 (117)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 88887764
No 143
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=33.19 E-value=50 Score=33.04 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=36.2
Q ss_pred cCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCC
Q 037804 23 SGTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIP 62 (609)
Q Consensus 23 sd~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP 62 (609)
.-.+.+.|..++|...++.|+++.|+.+|=++|.++.|+.
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~ 54 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLL 54 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCS
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCC
Confidence 3447899999999999999999999999999999999997
No 144
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=32.85 E-value=1.8e+02 Score=22.90 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=41.9
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCcCCCCCCeeeeee
Q 037804 25 TRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLSAIKKDSALLLTR 92 (609)
Q Consensus 25 ~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t~I~~dStLHLvR 92 (609)
.|+|.|.-..+ ...+++....||.+|.+++ +++.+.-.+..+|..+..+. -++++..|-++.
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-~L~~gD~V~ii~ 65 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-EIFDGDIIEVIR 65 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-BCCTTCEEEEEE
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-cCCCCCEEEEEe
Confidence 37777744322 2456777888999988764 66655545667888776555 488888888763
No 145
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=32.20 E-value=1.2e+02 Score=24.05 Aligned_cols=51 Identities=12% Similarity=0.212 Sum_probs=33.0
Q ss_pred EEeccCCCHHHHHHHHHHHhCCCC--CCcEEEeCCeeeccCCcCCCCCCeeeee
Q 037804 40 MELDRNDNAHTVKRRLQLALNIPT--DESSLTFGDLTLNNDLSAIKKDSALLLT 91 (609)
Q Consensus 40 ~eVe~sdTV~~VKqkIqekeGIP~--eqQRLIf~Gk~LeDd~t~I~~dStLHLv 91 (609)
+++ ...||.+|.+.+..+.++.. ..-.+.-+|+...+..+-+++++.|.++
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLL 68 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEE
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEE
Confidence 556 56799999999876533321 2234455676644444568888888886
No 146
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=31.64 E-value=35 Score=27.16 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=20.8
Q ss_pred HHHHHHHHCCCCHHHHHHhhhhcc
Q 037804 391 VFLQEAAAFGLCLAEIGEMMTREF 414 (609)
Q Consensus 391 ~lLK~~a~~gLtl~eIg~~m~R~~ 414 (609)
.|+++|.+.|+|+.||..++....
T Consensus 17 ~LI~~Ak~lGlsleEIrefL~l~~ 40 (57)
T 1b0n_B 17 ELMVEAKEANISPEEIRKYLLLNK 40 (57)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhc
Confidence 578999999999999999987653
No 147
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=30.44 E-value=1.3e+02 Score=27.56 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=24.1
Q ss_pred cEEEEEeccCCCHHHHHHHHHHH----hCCCCC
Q 037804 36 CVLGMELDRNDNAHTVKRRLQLA----LNIPTD 64 (609)
Q Consensus 36 k~~~~eVe~sdTV~~VKqkIqek----eGIP~e 64 (609)
..+.+.|-.+|||.+||+||-+. .|.|..
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys 71 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYG 71 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCS
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCC
Confidence 46889999999999999999775 488753
No 148
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=28.61 E-value=86 Score=24.25 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=38.3
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCcCCCCCCeeeeee
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLSAIKKDSALLLTR 92 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t~I~~dStLHLvR 92 (609)
|.|.|.+.+|+. +++....|+.++-+.|....+- ..--...+|+...-+ +-+++++.|-++.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~~--~~vaa~vNg~lvdl~-~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLGD--HCIGAKVNHKLVPLS-YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHHH--TEEEEEETTEECCTT-CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhcccc--ceEEEEECCEEeCCC-cCcCCCCEEEEEE
Confidence 568888888987 4566789999998777432210 001112466544333 3477788887763
No 149
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=28.40 E-value=71 Score=31.38 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=33.9
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCC
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPT 63 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~ 63 (609)
+.|.|...+| ++.+.|+++.|+++|=++|..+.|+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e 38 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLRE 38 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCC
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 5788999999 789999999999999999999999973
No 150
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=27.37 E-value=35 Score=38.63 Aligned_cols=47 Identities=30% Similarity=0.392 Sum_probs=39.9
Q ss_pred eCCCcEEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeC-CeeeccC
Q 037804 32 TETGCVLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFG-DLTLNND 78 (609)
Q Consensus 32 TltGk~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~-Gk~LeDd 78 (609)
..+++...+.+.+..|+..+|..|++..|||++.|.|++. |..++..
T Consensus 318 ~~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~ 365 (676)
T 3qa8_A 318 MVSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSA 365 (676)
T ss_dssp SSSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTT
T ss_pred ccccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCC
Confidence 4477788899999999999999999999999999999988 4444433
No 151
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=26.86 E-value=1.2e+02 Score=26.10 Aligned_cols=54 Identities=24% Similarity=0.393 Sum_probs=46.1
Q ss_pred EEEEEeccCCCHHHHHHHHHHHhCCCCCCcEEEeCCeeeccCCc----CCCCCCeeee
Q 037804 37 VLGMELDRNDNAHTVKRRLQLALNIPTDESSLTFGDLTLNNDLS----AIKKDSALLL 90 (609)
Q Consensus 37 ~~~~eVe~sdTV~~VKqkIqekeGIP~eqQRLIf~Gk~LeDd~t----~I~~dStLHL 90 (609)
.+.-+.|=...+.+||+-++.+.|+....-.+..-+.+|+.+.+ |++.+..+.+
T Consensus 4 vi~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQi 61 (89)
T 2juo_A 4 CVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQL 61 (89)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEE
T ss_pred hhhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEE
Confidence 45566777789999999999999999999888888989998885 7888888777
No 152
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=25.94 E-value=2.5e+02 Score=22.59 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=37.8
Q ss_pred CC-cEEEEEeccCCCHHHHHHHHHHHhC-C----CC------CCcEEEeCCeeeccCCcCCCCCCeeeee
Q 037804 34 TG-CVLGMELDRNDNAHTVKRRLQLALN-I----PT------DESSLTFGDLTLNNDLSAIKKDSALLLT 91 (609)
Q Consensus 34 tG-k~~~~eVe~sdTV~~VKqkIqekeG-I----P~------eqQRLIf~Gk~LeDd~t~I~~dStLHLv 91 (609)
.| +...+++....||++|.+.+..+.. + -. ..-.+.-+|+....+ +-+++++.|.++
T Consensus 15 ~g~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~-~~l~~gDeV~i~ 83 (89)
T 3po0_A 15 AGSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG-EATAAGDELALF 83 (89)
T ss_dssp HTCSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT-SBCCTTCEEEEE
T ss_pred hCCCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC-cccCCCCEEEEE
Confidence 45 5778888888899999999988752 1 00 012455566655543 347788887775
No 153
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=25.12 E-value=93 Score=30.95 Aligned_cols=39 Identities=10% Similarity=0.006 Sum_probs=35.1
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCC
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPT 63 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~ 63 (609)
..+.+.|..++| ++.+.|+++.|+++|=++|..+.|+..
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e 59 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRE 59 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCC
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCC
Confidence 347788999999 899999999999999999999999973
No 154
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=24.76 E-value=58 Score=31.20 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=51.7
Q ss_pred eecccccCcccCCCCCcccccCCCCCCCCCHHHHHHHH----cCChhhhH--HHHH------hcCCCchHHHHHHHHHHH
Q 037804 323 PIDHGLCLPESLEDPYFEWMHWPQASIPFSEDELEYIR----NLNPAHDS--EMLR------TELPMIREACLRVLILST 390 (609)
Q Consensus 323 pIDHGLcfP~~~~d~~f~Wl~WPqA~~PFS~e~l~yI~----~LD~~~D~--~~Lr------~~l~~ire~clr~l~i~t 390 (609)
.|-||+++|-..++..+.-+..-....+|+++++..+. .|-...-. ..+. ...+.|.+...++|+.
T Consensus 109 gl~~G~~~p~~~~~g~~g~ls~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lt~re~~vl~~-- 186 (237)
T 3szt_A 109 GIRHGWSIPVRGKYGLISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKW-- 186 (237)
T ss_dssp TCCEEEEEEEECGGGCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGGCCCCHHHHHHHHH--
T ss_pred CCCCEEEEEeeCCCCCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHH--
Confidence 34478888875555555444443344578888775542 11111111 1111 1123456665655532
Q ss_pred HHHHHHHHCCCCHHHHHHhhhhccccCCCCCChHHHHHHHHHH
Q 037804 391 VFLQEAAAFGLCLAEIGEMMTREFRSEDEKPSELEIVCLEARR 433 (609)
Q Consensus 391 ~lLK~~a~~gLtl~eIg~~m~R~~~~~~~~pS~lE~~~~~a~~ 433 (609)
...|+|..|||.+|.-.. +.++..+..+++
T Consensus 187 ------~~~G~s~~eIa~~l~is~-------~tV~~~~~~~~~ 216 (237)
T 3szt_A 187 ------TAVGKTYGEIGLILSIDQ-------RTVKFHIVNAMR 216 (237)
T ss_dssp ------HHTTCCHHHHHHHHTSCH-------HHHHHHHHHHHH
T ss_pred ------HHcCCCHHHHHHHHCCCH-------HHHHHHHHHHHH
Confidence 258999999999886542 445555555543
No 155
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=24.71 E-value=92 Score=31.89 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=35.1
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCC
Q 037804 26 RRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIP 62 (609)
Q Consensus 26 ~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP 62 (609)
+.+.|..++|....+.|+++.|+.+|=++|.++.|+.
T Consensus 86 ~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~ 122 (371)
T 3ivf_A 86 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGIT 122 (371)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCS
T ss_pred eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCC
Confidence 6788999999999999999999999999999999997
No 156
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=24.17 E-value=35 Score=23.79 Aligned_cols=16 Identities=56% Similarity=0.910 Sum_probs=12.3
Q ss_pred HHHH---HHHHHHHHhcHH
Q 037804 570 EEWL---LFLEKFKELLHP 585 (609)
Q Consensus 570 ~~w~---~fl~~f~~ll~~ 585 (609)
|-|. .||.||+|||.-
T Consensus 5 eiwklheeflkkfeellkl 23 (32)
T 1m3w_A 5 EIWKLHEEFLKKFEELLKL 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4464 599999999873
No 157
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=20.07 E-value=1.3e+02 Score=32.62 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=36.9
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHhCCCC
Q 037804 24 GTRRVFVQTETGCVLGMELDRNDNAHTVKRRLQLALNIPT 63 (609)
Q Consensus 24 d~~qIfVKTltGk~~~~eVe~sdTV~~VKqkIqekeGIP~ 63 (609)
..+.+.|...+|....+.|+++.|+++|-+.|.++.|+..
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e 254 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMED 254 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTT
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCC
Confidence 3578899999999999999999999999999999999973
No 158
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=20.04 E-value=2.5e+02 Score=22.84 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=34.7
Q ss_pred CCcEEEEEeccCCCHHHHHHHHHHHhCC------C---CC----CcEEEeCCeeecc---CCcCCCCCCeeeee
Q 037804 34 TGCVLGMELDRNDNAHTVKRRLQLALNI------P---TD----ESSLTFGDLTLNN---DLSAIKKDSALLLT 91 (609)
Q Consensus 34 tGk~~~~eVe~sdTV~~VKqkIqekeGI------P---~e----qQRLIf~Gk~LeD---d~t~I~~dStLHLv 91 (609)
.|+.-.++++ ..||.+|.+.+..+..- . .. .-.+.-+|+.... ..+-+++++.|.++
T Consensus 15 ~g~~~~~~~~-~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 15 TGGQKSVSAS-GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTIL 87 (93)
T ss_dssp TTTCSEEEEC-CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred hCCCeEEecC-CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEE
Confidence 4543346654 57999999999887520 0 00 1245566766553 22458888888876
Done!