BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037807
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|B Chain B, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|C Chain C, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|D Chain D, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|2Q41|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
Length = 334
Score = 347 bits (891), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 164/276 (59%), Positives = 206/276 (74%), Gaps = 5/276 (1%)
Query: 5 GQAHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLC 64
G+AH L+VEK++FQGKS+YQ+++VFQS++YGKV VLDG +QLTE+DECAYQE ITHLPLC
Sbjct: 57 GEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEXITHLPLC 116
Query: 65 SIPNPKKVXXXXXXXXXXXREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRV 124
SIPNPKKV RE++RHAS+EQI CEID +++V K++FP++AIGYED RV
Sbjct: 117 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDXCEIDKXVVDVSKQFFPDVAIGYEDPRV 176
Query: 125 ILHVCDGSEYLKTVQSGTXXXXXXXXXXPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184
L + DG +LK G+ PI P +LFE PFF+ VA+ALRPGG +C QAE
Sbjct: 177 NLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 236
Query: 185 SLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIHPIN 244
SLW ++ ++ +C IFKGS +YAWT+VPTYPSGVIGF LCST EGP VDF HP+N
Sbjct: 237 SLWLHXDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFXLCST--EGPDVDFKHPLN 294
Query: 245 PIDPDQIFGVAKGPLKFYNSAEVHAAAFCLPTFAKK 280
PI D+ + GPLKFYN AE+H+AAFCLP+FAKK
Sbjct: 295 PI--DESSSKSNGPLKFYN-AEIHSAAFCLPSFAKK 327
>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
pdb|3RW9|B Chain B, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
Length = 304
Score = 224 bits (570), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 119/276 (43%), Positives = 168/276 (60%), Gaps = 9/276 (3%)
Query: 5 GQAHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLC 64
GQA L+VE+++ +S YQ+++VF+S +YG V VLDG +Q TE+DE +YQEMI +LPLC
Sbjct: 32 GQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLC 91
Query: 65 SIPNPKKVXXXXXXXXXXXREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRV 124
S PNP+KV RE+ +H SVE + CEID +I V K++ P +AIGY S++
Sbjct: 92 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL 151
Query: 125 ILHVCDGSEYLKTVQSGTXXXXXXXXXXPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184
LHV DG E++K Q P+ P LF+ +++L+ AL+ G +C Q E
Sbjct: 152 TLHVGDGFEFMKQNQD-AFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210
Query: 185 SLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIHPIN 244
W ++ + C +F +YA+ T+PTYPSG IGFMLC S+ PS +F P+
Sbjct: 211 CQWLHLDLIKEMRQFCQSLFP-VVAYAYCTIPTYPSGQIGFMLC---SKNPSTNFQEPVQ 266
Query: 245 PIDPDQIFGVAKGPLKFYNSAEVHAAAFCLPTFAKK 280
P+ Q VA+ LK+YNS +VH AAF LP FA+K
Sbjct: 267 PLTQQQ---VAQMQLKYYNS-DVHRAAFVLPEFARK 298
>pdb|2O05|A Chain A, Human Spermidine Synthase
pdb|2O05|B Chain B, Human Spermidine Synthase
pdb|2O06|A Chain A, Human Spermidine Synthase
pdb|2O06|B Chain B, Human Spermidine Synthase
pdb|2O07|A Chain A, Human Spermidine Synthase
pdb|2O07|B Chain B, Human Spermidine Synthase
pdb|2O0L|A Chain A, Human Spermidine Synthase
pdb|2O0L|B Chain B, Human Spermidine Synthase
Length = 304
Score = 223 bits (569), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 119/276 (43%), Positives = 168/276 (60%), Gaps = 9/276 (3%)
Query: 5 GQAHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLC 64
GQA L+VE+++ +S YQ+++VF+S +YG V VLDG +Q TE+DE +YQEMI +LPLC
Sbjct: 32 GQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLC 91
Query: 65 SIPNPKKVXXXXXXXXXXXREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRV 124
S PNP+KV RE+ +H SVE + CEID +I V K++ P +AIGY S++
Sbjct: 92 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL 151
Query: 125 ILHVCDGSEYLKTVQSGTXXXXXXXXXXPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184
LHV DG E++K Q P+ P LF+ +++L+ AL+ G +C Q E
Sbjct: 152 TLHVGDGFEFMKQNQDA-FDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210
Query: 185 SLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIHPIN 244
W ++ + C +F +YA+ T+PTYPSG IGFMLC S+ PS +F P+
Sbjct: 211 CQWLHLDLIKEMRQFCQSLFP-VVAYAYCTIPTYPSGQIGFMLC---SKNPSTNFQEPVQ 266
Query: 245 PIDPDQIFGVAKGPLKFYNSAEVHAAAFCLPTFAKK 280
P+ Q VA+ LK+YNS +VH AAF LP FA+K
Sbjct: 267 PLTQQQ---VAQMQLKYYNS-DVHRAAFVLPEFARK 298
>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PT6|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT9|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
Length = 321
Score = 201 bits (511), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 112/276 (40%), Positives = 157/276 (56%), Gaps = 12/276 (4%)
Query: 5 GQAHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLC 64
GQA L+++KI+++ KS+YQN++VF+S++YGKV VLDG +QLTEKDE AY EM+TH+P+
Sbjct: 53 GQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMT 112
Query: 65 SIPNPKKVXXXXXXXXXXXREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRV 124
PK V RE+ ++ SVE I ICEID +I V K YF I+ GYED RV
Sbjct: 113 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV 172
Query: 125 ILHVCDGSEYLKTVQSGTXXXXXXXXXXPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184
+ + D S++L+ V + T PI P LF F+E + AL+P G Q E
Sbjct: 173 NVFIEDASKFLENV-TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231
Query: 185 SLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIHPIN 244
SLW +++++I ++FK YA ++PTYP G IG + CS G P
Sbjct: 232 SLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCSKTDTG----LTKPNK 286
Query: 245 PIDPDQIFGVAKGPLKFYNSAEVHAAAFCLPTFAKK 280
++ + LK+YN E H+AAF LP F K
Sbjct: 287 KLESKEF-----ADLKYYN-YENHSAAFKLPAFLLK 316
>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2I7C|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|3B7P|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3RIE|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
Length = 283
Score = 201 bits (511), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 112/276 (40%), Positives = 157/276 (56%), Gaps = 12/276 (4%)
Query: 5 GQAHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLC 64
GQA L+++KI+++ KS+YQN++VF+S++YGKV VLDG +QLTEKDE AY EM+TH+P+
Sbjct: 15 GQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMT 74
Query: 65 SIPNPKKVXXXXXXXXXXXREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRV 124
PK V RE+ ++ SVE I ICEID +I V K YF I+ GYED RV
Sbjct: 75 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV 134
Query: 125 ILHVCDGSEYLKTVQSGTXXXXXXXXXXPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184
+ + D S++L+ V + T PI P LF F+E + AL+P G Q E
Sbjct: 135 NVFIEDASKFLENV-TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193
Query: 185 SLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIHPIN 244
SLW +++++I ++FK YA ++PTYP G IG + CS G P
Sbjct: 194 SLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCSKTDTG----LTKPNK 248
Query: 245 PIDPDQIFGVAKGPLKFYNSAEVHAAAFCLPTFAKK 280
++ + LK+YN E H+AAF LP F K
Sbjct: 249 KLESKEF-----ADLKYYN-YENHSAAFKLPAFLLK 278
>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
Length = 282
Score = 201 bits (510), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 112/276 (40%), Positives = 157/276 (56%), Gaps = 12/276 (4%)
Query: 5 GQAHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLC 64
GQA L+++KI+++ KS+YQN++VF+S++YGKV VLDG +QLTEKDE AY EM+TH+P+
Sbjct: 14 GQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMT 73
Query: 65 SIPNPKKVXXXXXXXXXXXREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRV 124
PK V RE+ ++ SVE I ICEID +I V K YF I+ GYED RV
Sbjct: 74 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV 133
Query: 125 ILHVCDGSEYLKTVQSGTXXXXXXXXXXPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184
+ + D S++L+ V + T PI P LF F+E + AL+P G Q E
Sbjct: 134 NVFIEDASKFLENV-TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 192
Query: 185 SLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIHPIN 244
SLW +++++I ++FK YA ++PTYP G IG + CS G P
Sbjct: 193 SLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCSKTDTG----LTKPNK 247
Query: 245 PIDPDQIFGVAKGPLKFYNSAEVHAAAFCLPTFAKK 280
++ + LK+YN E H+AAF LP F K
Sbjct: 248 KLESKEF-----ADLKYYN-YENHSAAFKLPAFLLK 277
>pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
pdb|2B2C|B Chain B, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
Length = 314
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 163/276 (59%), Gaps = 9/276 (3%)
Query: 5 GQAHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLC 64
GQA L+V+K++F KS+YQ+++VF+S++YG V VLDG +Q TE+DE +YQEM+ HLP+
Sbjct: 45 GQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMF 104
Query: 65 SIPNPKKVXXXXXXXXXXXREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRV 124
+ P+PK+V RE+ +H SVE++ +CEID M+I+V K++ P ++ G+ ++
Sbjct: 105 AHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKL 164
Query: 125 ILHVCDGSEYLKTVQSGTXXXXXXXXXXPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184
L DG E+LK P+ P LF ++EL+ AL+ G + Q E
Sbjct: 165 DLFCGDGFEFLKN-HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 223
Query: 185 SLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIHPIN 244
S+W + HL+ +IF + +YA + V TYPSG +G+++C+ + + D P
Sbjct: 224 SVWLHLPLIAHLVAFNRKIFP-AVTYAQSIVSTYPSGSMGYLICAKNA---NRDVTTPAR 279
Query: 245 PIDPDQIFGVAKGPLKFYNSAEVHAAAFCLPTFAKK 280
+ +QI + L+FYNS EVH AAF LP F K
Sbjct: 280 TLTAEQIKALN---LRFYNS-EVHKAAFVLPQFVKN 311
>pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWB|B Chain B, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWC|A Chain A, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
pdb|3BWC|B Chain B, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
Length = 304
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 145/282 (51%), Gaps = 19/282 (6%)
Query: 5 GQAHFLEVEKIIFQGKSEYQNMMVFQSSS---YGKVFVLDGALQLTEKDECAYQEMITHL 61
GQA L VEK+++ +++Q++ +F+S +G V LDG +Q+T+ DE Y E++ H
Sbjct: 29 GQAXSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVXALDGCIQVTDYDEFVYHEVLGHT 88
Query: 62 PLCSIPNPKKVXXXXXXXXXXXREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYED 121
LCS P P++V RE+ RH +VE + +ID + K++FP+I+ D
Sbjct: 89 SLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVXEQSKQHFPQISRSLAD 148
Query: 122 SRVILHVCDGSEYLKTVQSGTXXXXXXXXXXPIRPGHDLFEGPFFELVAKALRPGGAMCI 181
R + V DG +++ T P P LF F++ V + L+P G C
Sbjct: 149 PRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCN 208
Query: 182 QAESLWFQQFSVQHLIDDCHRIFK----GSASYAWTTVPTYPSGVIGFMLCSTESEGPSV 237
Q ES+W LI+ R + S YA VPTYP G IG ++CS ++ V
Sbjct: 209 QGESIWLD----LELIEKXSRFIRETGFASVQYALXHVPTYPCGSIGTLVCSKKA---GV 261
Query: 238 DFIHPINPIDPDQIFGVAKGPLKFYNSAEVHAAAFCLPTFAK 279
D P+ P++ D F AK LK+Y+S E H A+F LP FA+
Sbjct: 262 DVTKPLRPVE-DXPF--AKD-LKYYDS-EXHKASFALPRFAR 298
>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|B Chain B, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|C Chain C, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|D Chain D, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1INL|A Chain A, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|B Chain B, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|C Chain C, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|D Chain D, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
Length = 296
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 135/272 (49%), Gaps = 11/272 (4%)
Query: 9 FLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPN 68
F+++ ++I+ G+S+ Q + +F++ G VF LDG TEKDE Y EM+ H+P+ PN
Sbjct: 31 FMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPN 90
Query: 69 PKKVXXXXXXXXXXXREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHV 128
PKKV RE+ +H SVE+ +CE+D ++I ++Y + + G++D R + +
Sbjct: 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI 150
Query: 129 CDGSEYLKTVQSGTXXXXXXXXXXPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWF 188
+G+EY++ ++ G LF F++ AL+ G + E ++
Sbjct: 151 ANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFY 210
Query: 189 QQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIHPINPIDP 248
+ ++F + Y + TYPSG+ + S I PI DP
Sbjct: 211 DIGWFKLAYRRISKVFPITRVYL-GFMTTYPSGMWSYTFASKG--------IDPIKDFDP 261
Query: 249 DQIFGVAKGPLKFYNSAEVHAAAFCLPTFAKK 280
+++ K LK+YN EVH A+F LP F KK
Sbjct: 262 EKVRKFNK-ELKYYNE-EVHVASFALPNFVKK 291
>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|B Chain B, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|C Chain C, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|D Chain D, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|E Chain E, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|F Chain F, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|G Chain G, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|H Chain H, Crystal Structure Of Spermidine Synthase From E. Coli
Length = 294
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 135/276 (48%), Gaps = 14/276 (5%)
Query: 7 AHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSI 66
+ V+ +++ K+++Q++++F+++++G+V LDG +Q TE+DE Y EM+TH+PL +
Sbjct: 22 GQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAH 81
Query: 67 PNPKKVXXXXXXXXXXXREISRHASVEQIHICEIDTMLINVYKEYFPEIAIG-YEDSRVI 125
+ K V RE++RH +VE I + EID +++ ++Y P G Y+D R
Sbjct: 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFK 141
Query: 126 LHVCDGSEYLKTVQSGTXXXXXXXXXXPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185
L + DG ++ S T PI PG LF F+E + L PGG Q
Sbjct: 142 LVIDDGVNFVNQT-SQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV 200
Query: 186 LWFQQFSVQHLIDDCHRI--FKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIHPI 243
+ QQ + ID ++ + + +PTY G++ F + D + +
Sbjct: 201 CFLQQ---EEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDN------DALRHL 251
Query: 244 NPIDPDQIFGVAKGPLKFYNSAEVHAAAFCLPTFAK 279
+ F + ++YN A +H AAF LP + +
Sbjct: 252 STEIIQARFLASGLKCRYYNPA-IHTAAFALPQYLQ 286
>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase
pdb|1IY9|B Chain B, Crystal Structure Of Spermidine Synthase
pdb|1IY9|C Chain C, Crystal Structure Of Spermidine Synthase
pdb|1IY9|D Chain D, Crystal Structure Of Spermidine Synthase
Length = 275
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 132/269 (49%), Gaps = 15/269 (5%)
Query: 10 LEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNP 69
++V K + ++E+Q++ + ++ +G + LDG + +EKDE Y EM+ H+PL + PNP
Sbjct: 17 MKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNP 76
Query: 70 KKVXXXXXXXXXXXREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVC 129
+ V REI +H SV++ + +ID +I K++ P IA +D RV + V
Sbjct: 77 EHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD 136
Query: 130 DGSEYLKTVQSGTXXXXXXXXXXPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQ 189
DG ++ ++ P+ P +LF F+ +AKAL+ G Q ++ WF
Sbjct: 137 DGFMHIAKSEN-QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFT 195
Query: 190 QFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIHPINPIDPD 249
+ ++ D IF + Y +PTYPSG+ F + S + + +V +
Sbjct: 196 PELITNVQRDVKEIFPITKLYT-ANIPTYPSGLWTFTIGSKKYDPLAV---------EDS 245
Query: 250 QIFGVAKGPLKFYNSAEVHAAAFCLPTFA 278
+ F + Y + ++H AAF LP F
Sbjct: 246 RFFDIETK----YYTKDIHKAAFVLPKFV 270
>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
pdb|3ANX|B Chain B, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
Length = 314
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 12/221 (5%)
Query: 11 EVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPK 70
+E++I GK+ +Q+ +F+S +GKV +LD +Q TE+DE Y E + H + + P PK
Sbjct: 20 RMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPK 79
Query: 71 KVXXXXXXXXXXXREISRHASVEQIHICEIDTMLINVYKEYFPEIAIG-YEDSRVILHVC 129
+V RE+ +H +VE+ + +ID L+ V K + PE G ++D R +L +
Sbjct: 80 RVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID 139
Query: 130 DGSEYLKTVQSGTXXXXXXXXXXPI---RPGHDLFEGPFFELVAKALRPGGAMCIQAESL 186
D YL+ + P+ P L+ F+ LV L PGG M +QA +
Sbjct: 140 DARAYLERTEE-RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQAGMI 198
Query: 187 WFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFML 227
V ++ HR + + Y V +Y + + GF L
Sbjct: 199 LLTHHRVHPVV---HRTVREAFRY----VRSYKNHIPGFFL 232
>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
pdb|1UIR|B Chain B, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
Length = 314
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 12/221 (5%)
Query: 11 EVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPK 70
+E++I GK+ +Q+ +F+S +GKV +LD +Q TE+DE Y E + H + + P PK
Sbjct: 20 RMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPK 79
Query: 71 KVXXXXXXXXXXXREISRHASVEQIHICEIDTMLINVYKEYFPEIAIG-YEDSRVILHVC 129
+V RE+ +H +VE+ + +ID L+ V K + PE G ++D R +L +
Sbjct: 80 RVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID 139
Query: 130 DGSEYLKTVQSGTXXXXXXXXXXPI---RPGHDLFEGPFFELVAKALRPGGAMCIQAESL 186
D YL+ + P+ P L+ F+ LV L PGG M +Q +
Sbjct: 140 DARAYLERTEE-RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMI 198
Query: 187 WFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFML 227
V ++ HR + + Y V +Y + + GF L
Sbjct: 199 LLTHHRVHPVV---HRTVREAFRY----VRSYKNHIPGFFL 232
>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
pdb|1MJF|B Chain B, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
Length = 281
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 9/193 (4%)
Query: 2 YLAGQAHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHL 61
Y G +++K I++ S+YQ + V+++ +G++ LDG +QL E +Y E + H
Sbjct: 9 YPRGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHP 68
Query: 62 PLCSIPNPKKVXXXXXXXXXXXREISRHASVEQIHICEIDTMLINVYKEYFP------EI 115
+ + P PK+V RE+ +H V+++ + EID +I V K+ E
Sbjct: 69 AMLAHPKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEA 127
Query: 116 AIGYEDSRVILHVCDGSEYLKTVQSGTXXXXXXXXXXPIRPGHDLFEGPFFELVAKALRP 175
+ + + L + DG E++K + P+ P LF F+ V AL
Sbjct: 128 MLNGKHEKAKLTIGDGFEFIKNNRG--FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN 185
Query: 176 GGAMCIQAESLWF 188
G QA S++
Sbjct: 186 PGIYVTQAGSVYL 198
>pdb|2E5W|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2ZSU|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|E Chain E, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|F Chain F, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
Length = 280
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 92/193 (47%), Gaps = 8/193 (4%)
Query: 2 YLAGQAHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHL 61
Y G +V++ I + +SEYQ + V+++ +GK+ +DG +QL + E +Y E + H
Sbjct: 10 YPRGYGVAFKVKRKILEEQSEYQKIEVYETEGFGKLLAIDGTVQLVTEGEKSYHEPLVHP 69
Query: 62 PLCSIPNPKKVXXXXXXXXXXXREISRHASVEQIHICEIDTMLINVYKEYFP------EI 115
+ + PNP++V RE+ +H VE++ + EID +I + +Y E
Sbjct: 70 AMLAHPNPRRVLIIGGGDGGAIREVLKHEEVEEVIMVEIDKKVIEISAKYIGIDGGILEK 129
Query: 116 AIGYEDSRVILHVCDGSEYLKTVQSGTXXXXXXXXXXPIRPGHDLFEGPFFELVAKALRP 175
+ + + L + DG ++++ ++ P+ P LF F++ +AL
Sbjct: 130 MLSDKHEKGKLIIGDGVKFIE--ENSGFDVIIVDSTDPVGPAEMLFSEEFYKNAYRALND 187
Query: 176 GGAMCIQAESLWF 188
G QA S++
Sbjct: 188 PGIYVTQAGSVYL 200
>pdb|3C6K|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6M|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
Length = 381
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 11 EVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMI 58
+++++++ S YQN+ + S +G + +L G + L E D AY I
Sbjct: 150 DIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYTRAI 196
>pdb|3IX1|A Chain A, Periplasmic
N-Formyl-4-Amino-5-Aminomethyl-2-Methylpyrimidine
Binding Protein From Bacillus Halodurans
pdb|3IX1|B Chain B, Periplasmic
N-Formyl-4-Amino-5-Aminomethyl-2-Methylpyrimidine
Binding Protein From Bacillus Halodurans
Length = 302
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 218 YPSGVIGFMLCSTES-----EGPSVDFIHPINPIDPDQIFGVAKGPLKF 261
YP+ V F+ + E+ EG VD + P NP DP Q+ PL
Sbjct: 12 YPNAVHTFLYVAIENGYFAEEGLDVDIVFPTNPTDPIQLTASGAIPLAL 60
>pdb|2CGL|A Chain A, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
Coli In Complex With L-Fructose, Adp And A Modeled Atp
Gamma Phosphate
Length = 489
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 208 ASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIHPINPIDPDQIFGVAKGPLKFYNSAEV 267
A+ AW PT+P VIG +C +E P V D V PL +A +
Sbjct: 202 ANKAWFGRPTHPGNVIGHWICPQGNEIPVVAV------ASHDTASAVIASPLNGSRAAYL 255
Query: 268 HAAAFCLPTFAKK 280
+ + L F +
Sbjct: 256 SSGTWSLXGFESQ 268
>pdb|2CGJ|A Chain A, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
Coli In Complex With L-Fructose And Adp.
pdb|2CGK|A Chain A, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
Coli In An Open Uncomplexed Conformation.
pdb|2CGK|B Chain B, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
Coli In An Open Uncomplexed Conformation.
pdb|2UYT|A Chain A, Structure Of L-Rhamnulose Kinase In Complex With Adp And
Beta-L-Rhamnulose
Length = 489
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 208 ASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIHPINPIDPDQIFGVAKGPLKFYNSAEV 267
A+ AW PT+P VIG +C +E P V D V PL +A +
Sbjct: 202 ANKAWFGRPTHPGNVIGHWICPQGNEIPVVAV------ASHDTASAVIASPLNGSRAAYL 255
Query: 268 HAAAFCLPTFAKK 280
+ + L F +
Sbjct: 256 SSGTWSLMGFESQ 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,713,478
Number of Sequences: 62578
Number of extensions: 326380
Number of successful extensions: 624
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 20
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)