Query 037807
Match_columns 299
No_of_seqs 377 out of 2766
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:35:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02366 spermidine synthase 100.0 7.2E-63 1.6E-67 453.6 30.7 282 2-286 25-306 (308)
2 PRK00536 speE spermidine synth 100.0 2.5E-63 5.3E-68 444.9 25.7 254 2-286 7-260 (262)
3 PRK00811 spermidine synthase; 100.0 1.2E-58 2.6E-63 422.9 29.0 273 2-283 10-283 (283)
4 COG0421 SpeE Spermidine syntha 100.0 8.4E-59 1.8E-63 420.1 24.0 270 4-283 12-281 (282)
5 PLN02823 spermine synthase 100.0 2.1E-56 4.6E-61 414.6 28.7 273 3-285 38-315 (336)
6 TIGR00417 speE spermidine synt 100.0 2.4E-53 5.2E-58 385.8 27.8 265 2-277 6-270 (270)
7 KOG1562 Spermidine synthase [A 100.0 3.3E-55 7.1E-60 387.7 12.7 280 2-285 55-334 (337)
8 PF01564 Spermine_synth: Sperm 100.0 7E-52 1.5E-56 370.8 24.9 227 2-230 10-237 (246)
9 PRK03612 spermidine synthase; 100.0 2.7E-46 5.8E-51 367.2 25.2 254 7-279 233-494 (521)
10 PRK01581 speE spermidine synth 100.0 3.3E-46 7.2E-51 345.3 24.1 215 11-230 95-313 (374)
11 COG4262 Predicted spermidine s 100.0 1.7E-45 3.7E-50 333.3 20.8 246 12-277 234-483 (508)
12 PRK04457 spermidine synthase; 99.9 1.3E-25 2.8E-30 203.1 21.9 199 18-230 11-216 (262)
13 COG2521 Predicted archaeal met 99.7 2.2E-16 4.8E-21 136.7 15.8 164 36-203 102-268 (287)
14 PF12847 Methyltransf_18: Meth 99.6 9.4E-16 2E-20 120.1 7.5 109 69-183 2-111 (112)
15 PF13659 Methyltransf_26: Meth 99.5 3.7E-14 8E-19 112.0 10.5 109 70-182 2-114 (117)
16 COG4123 Predicted O-methyltran 99.5 6E-13 1.3E-17 118.2 17.2 130 67-204 43-187 (248)
17 PRK00121 trmB tRNA (guanine-N( 99.5 5E-13 1.1E-17 116.4 15.8 127 68-202 40-171 (202)
18 TIGR00091 tRNA (guanine-N(7)-) 99.5 5.2E-13 1.1E-17 115.5 15.0 127 68-202 16-147 (194)
19 PF05175 MTS: Methyltransferas 99.5 5.3E-14 1.2E-18 119.3 7.4 107 68-181 31-138 (170)
20 TIGR03533 L3_gln_methyl protei 99.5 6.1E-13 1.3E-17 121.8 14.5 156 21-185 76-253 (284)
21 PRK14966 unknown domain/N5-glu 99.5 2E-12 4.4E-17 122.8 17.4 153 20-183 208-381 (423)
22 TIGR00138 gidB 16S rRNA methyl 99.5 1.1E-12 2.4E-17 112.4 13.4 102 68-184 42-143 (181)
23 PRK15128 23S rRNA m(5)C1962 me 99.4 1.5E-12 3.3E-17 124.2 14.8 129 68-199 220-355 (396)
24 PF13847 Methyltransf_31: Meth 99.4 6.6E-13 1.4E-17 110.2 10.8 107 68-183 3-110 (152)
25 TIGR02469 CbiT precorrin-6Y C5 99.4 1.1E-12 2.4E-17 104.1 11.6 104 68-183 19-122 (124)
26 PRK00107 gidB 16S rRNA methylt 99.4 1.3E-12 2.8E-17 112.5 11.8 104 67-185 44-147 (187)
27 COG2226 UbiE Methylase involve 99.4 3.2E-12 7E-17 113.4 14.6 106 68-183 51-156 (238)
28 TIGR02752 MenG_heptapren 2-hep 99.4 3.8E-12 8.3E-17 112.6 15.0 107 67-183 44-151 (231)
29 COG1092 Predicted SAM-dependen 99.4 2.5E-12 5.4E-17 121.6 13.5 128 68-198 217-351 (393)
30 PF01596 Methyltransf_3: O-met 99.4 1.7E-12 3.8E-17 113.1 11.5 106 67-182 44-154 (205)
31 PRK01544 bifunctional N5-gluta 99.4 1.7E-12 3.7E-17 127.6 12.7 153 20-183 69-269 (506)
32 TIGR03704 PrmC_rel_meth putati 99.4 4.1E-12 9E-17 114.3 13.9 154 20-183 40-216 (251)
33 PRK11805 N5-glutamine S-adenos 99.4 4.9E-12 1.1E-16 117.0 14.5 156 21-185 88-265 (307)
34 COG2227 UbiG 2-polyprenyl-3-me 99.4 2.6E-12 5.5E-17 112.7 11.8 100 68-185 59-163 (243)
35 COG4122 Predicted O-methyltran 99.4 3.1E-12 6.7E-17 111.9 12.2 106 67-182 58-165 (219)
36 PRK08287 cobalt-precorrin-6Y C 99.4 6.3E-12 1.4E-16 108.0 14.0 102 67-183 30-131 (187)
37 PF01209 Ubie_methyltran: ubiE 99.4 7.4E-13 1.6E-17 117.8 8.4 106 67-182 46-152 (233)
38 PLN02781 Probable caffeoyl-CoA 99.4 2.8E-12 6E-17 114.3 12.0 106 67-182 67-177 (234)
39 TIGR00536 hemK_fam HemK family 99.4 3.2E-12 6.9E-17 117.1 12.3 156 21-185 69-246 (284)
40 PRK00377 cbiT cobalt-precorrin 99.4 1.2E-11 2.5E-16 107.4 15.2 121 67-202 39-160 (198)
41 PRK14121 tRNA (guanine-N(7)-)- 99.4 6E-12 1.3E-16 118.8 14.2 127 68-202 122-250 (390)
42 PRK01683 trans-aconitate 2-met 99.4 4.2E-12 9.2E-17 114.3 12.2 103 67-185 30-132 (258)
43 PRK11036 putative S-adenosyl-L 99.4 5.5E-12 1.2E-16 113.6 12.7 107 67-183 43-149 (255)
44 COG4106 Tam Trans-aconitate me 99.4 2E-12 4.4E-17 111.2 8.8 117 54-189 19-135 (257)
45 PF08241 Methyltransf_11: Meth 99.4 1.2E-12 2.6E-17 98.5 6.6 95 73-181 1-95 (95)
46 PRK07402 precorrin-6B methylas 99.4 2.1E-11 4.6E-16 105.5 15.1 105 67-184 39-143 (196)
47 PRK14103 trans-aconitate 2-met 99.4 4.2E-12 9.1E-17 114.3 11.1 99 67-183 28-126 (255)
48 PRK15001 SAM-dependent 23S rib 99.4 7E-12 1.5E-16 118.6 13.0 135 57-205 220-355 (378)
49 TIGR03534 RF_mod_PrmC protein- 99.4 3.3E-11 7.2E-16 107.6 16.4 110 67-183 86-217 (251)
50 PLN02476 O-methyltransferase 99.4 6.7E-12 1.4E-16 113.9 11.8 106 67-182 117-227 (278)
51 PRK15451 tRNA cmo(5)U34 methyl 99.4 9.3E-12 2E-16 111.7 12.5 108 67-183 55-164 (247)
52 PRK10909 rsmD 16S rRNA m(2)G96 99.3 5.6E-11 1.2E-15 103.3 16.7 145 25-183 12-159 (199)
53 COG2242 CobL Precorrin-6B meth 99.3 3.7E-11 7.9E-16 101.9 14.7 121 65-203 31-151 (187)
54 PLN02396 hexaprenyldihydroxybe 99.3 1.8E-11 3.9E-16 113.8 12.7 104 69-184 132-236 (322)
55 PLN02233 ubiquinone biosynthes 99.3 1.3E-11 2.8E-16 111.8 11.4 110 67-183 72-182 (261)
56 PRK09328 N5-glutamine S-adenos 99.3 5.3E-11 1.2E-15 107.9 15.4 153 22-184 65-239 (275)
57 TIGR00080 pimt protein-L-isoas 99.3 1.9E-11 4.2E-16 107.3 11.8 101 67-183 76-177 (215)
58 PRK14967 putative methyltransf 99.3 6E-11 1.3E-15 104.8 15.0 106 68-182 36-158 (223)
59 PRK09489 rsmC 16S ribosomal RN 99.3 1.6E-11 3.5E-16 115.1 11.5 106 69-183 197-303 (342)
60 TIGR00537 hemK_rel_arch HemK-r 99.3 4.2E-11 9.2E-16 102.1 13.1 105 68-183 19-140 (179)
61 PRK11207 tellurite resistance 99.3 1.8E-11 4E-16 106.1 10.9 103 68-181 30-132 (197)
62 PRK04266 fibrillarin; Provisio 99.3 1.4E-10 3E-15 102.8 16.3 103 67-182 71-175 (226)
63 PF13649 Methyltransf_25: Meth 99.3 4.3E-12 9.2E-17 98.0 5.7 96 72-177 1-101 (101)
64 COG2230 Cfa Cyclopropane fatty 99.3 1.7E-11 3.7E-16 110.8 10.4 105 67-183 71-176 (283)
65 PRK13942 protein-L-isoaspartat 99.3 2.7E-11 5.8E-16 106.4 11.4 101 67-183 75-176 (212)
66 PLN02244 tocopherol O-methyltr 99.3 2E-11 4.2E-16 114.6 10.9 107 67-183 117-223 (340)
67 COG2813 RsmC 16S RNA G1207 met 99.3 3.4E-11 7.3E-16 109.3 11.9 133 57-208 150-283 (300)
68 PRK11783 rlmL 23S rRNA m(2)G24 99.3 5E-11 1.1E-15 121.7 14.4 114 68-185 538-658 (702)
69 COG2519 GCD14 tRNA(1-methylade 99.3 5.6E-11 1.2E-15 105.1 12.7 118 67-203 93-211 (256)
70 PLN02589 caffeoyl-CoA O-methyl 99.3 3.9E-11 8.5E-16 107.4 12.0 106 67-182 78-189 (247)
71 PLN03075 nicotianamine synthas 99.3 2.9E-11 6.3E-16 110.4 11.3 109 68-183 123-233 (296)
72 PF08242 Methyltransf_12: Meth 99.3 9.4E-13 2E-17 101.1 1.2 99 73-179 1-99 (99)
73 PF02353 CMAS: Mycolic acid cy 99.3 1.6E-11 3.4E-16 111.7 9.2 106 66-183 60-166 (273)
74 PRK13944 protein-L-isoaspartat 99.3 3.3E-11 7.1E-16 105.2 10.9 100 68-182 72-172 (205)
75 COG2890 HemK Methylase of poly 99.3 1.3E-10 2.9E-15 106.1 15.3 152 21-184 67-239 (280)
76 TIGR00740 methyltransferase, p 99.3 8.5E-11 1.8E-15 104.8 13.3 108 67-183 52-161 (239)
77 COG2518 Pcm Protein-L-isoaspar 99.3 4.2E-11 9.1E-16 103.6 10.8 101 66-184 70-170 (209)
78 PRK00517 prmA ribosomal protei 99.3 1.9E-10 4.1E-15 103.4 15.2 131 67-230 118-249 (250)
79 TIGR00406 prmA ribosomal prote 99.3 1.5E-10 3.4E-15 106.2 14.8 118 68-204 159-276 (288)
80 PF02390 Methyltransf_4: Putat 99.2 5.5E-11 1.2E-15 103.1 10.9 124 71-202 20-148 (195)
81 TIGR02072 BioC biotin biosynth 99.2 5.5E-11 1.2E-15 104.9 11.2 103 67-183 33-135 (240)
82 smart00828 PKS_MT Methyltransf 99.2 3.7E-11 8.1E-16 105.8 10.0 104 70-183 1-104 (224)
83 PF10672 Methyltrans_SAM: S-ad 99.2 6.8E-11 1.5E-15 107.8 11.3 131 68-201 123-256 (286)
84 TIGR00477 tehB tellurite resis 99.2 5.2E-11 1.1E-15 103.1 10.1 102 68-181 30-131 (195)
85 KOG2352 Predicted spermine/spe 99.2 2E-11 4.4E-16 116.4 7.8 148 52-205 272-436 (482)
86 PRK10258 biotin biosynthesis p 99.2 6E-11 1.3E-15 106.4 10.4 99 68-183 42-140 (251)
87 PTZ00098 phosphoethanolamine N 99.2 5.9E-11 1.3E-15 107.6 10.1 105 67-183 51-156 (263)
88 KOG1270 Methyltransferases [Co 99.2 5.7E-11 1.2E-15 105.2 8.9 96 70-183 91-195 (282)
89 PRK11873 arsM arsenite S-adeno 99.2 1.5E-10 3.2E-15 105.2 11.5 106 67-182 76-182 (272)
90 COG0220 Predicted S-adenosylme 99.2 4.4E-10 9.6E-15 99.3 13.7 112 70-185 50-166 (227)
91 PRK14968 putative methyltransf 99.2 3.7E-10 8.1E-15 96.2 12.4 112 67-185 22-150 (188)
92 PF01135 PCMT: Protein-L-isoas 99.2 1.6E-10 3.4E-15 101.2 10.1 112 53-183 60-172 (209)
93 KOG1540 Ubiquinone biosynthesi 99.2 2.7E-10 5.8E-15 100.5 11.5 102 68-181 100-212 (296)
94 COG2264 PrmA Ribosomal protein 99.2 2.3E-10 5E-15 104.3 11.1 119 68-204 162-281 (300)
95 PRK11188 rrmJ 23S rRNA methylt 99.2 4.5E-10 9.8E-15 98.4 12.2 122 67-208 50-185 (209)
96 PLN02490 MPBQ/MSBQ methyltrans 99.1 5.1E-10 1.1E-14 104.6 13.1 102 68-182 113-214 (340)
97 PHA03411 putative methyltransf 99.1 4.2E-10 9.1E-15 101.5 11.9 111 68-190 64-191 (279)
98 PRK12335 tellurite resistance 99.1 1.9E-10 4.2E-15 105.4 9.7 102 68-181 120-221 (287)
99 PF05401 NodS: Nodulation prot 99.1 9.9E-11 2.1E-15 100.2 7.1 125 67-204 42-172 (201)
100 PLN02336 phosphoethanolamine N 99.1 2.7E-10 5.9E-15 111.4 11.2 105 67-183 265-369 (475)
101 PLN02672 methionine S-methyltr 99.1 9.8E-10 2.1E-14 115.2 15.6 152 32-185 83-280 (1082)
102 PRK00312 pcm protein-L-isoaspa 99.1 4.2E-10 9.1E-15 98.5 11.0 99 67-183 77-175 (212)
103 PRK06922 hypothetical protein; 99.1 4.6E-10 9.9E-15 111.6 11.8 112 68-184 418-538 (677)
104 PF06325 PrmA: Ribosomal prote 99.1 2.7E-10 5.8E-15 104.5 9.2 135 67-230 160-294 (295)
105 TIGR00095 RNA methyltransferas 99.1 1.3E-09 2.8E-14 94.0 12.9 107 68-183 49-159 (189)
106 TIGR00452 methyltransferase, p 99.1 8.3E-10 1.8E-14 102.3 12.5 102 68-183 121-225 (314)
107 PRK15068 tRNA mo(5)U34 methylt 99.1 8.5E-10 1.8E-14 102.8 12.7 115 54-182 111-225 (322)
108 PRK08317 hypothetical protein; 99.1 7.6E-10 1.6E-14 97.4 11.8 106 67-183 18-124 (241)
109 PRK14902 16S rRNA methyltransf 99.1 1.3E-09 2.8E-14 105.9 14.1 115 67-186 249-382 (444)
110 smart00650 rADc Ribosomal RNA 99.1 7.5E-10 1.6E-14 93.6 10.9 99 68-183 13-113 (169)
111 PRK00216 ubiE ubiquinone/menaq 99.1 6.9E-10 1.5E-14 98.0 10.9 106 68-182 51-157 (239)
112 PRK11705 cyclopropane fatty ac 99.1 6.1E-10 1.3E-14 106.1 11.2 101 67-183 166-267 (383)
113 PRK10901 16S rRNA methyltransf 99.1 1.6E-09 3.6E-14 104.7 14.3 116 67-187 243-376 (427)
114 PF03602 Cons_hypoth95: Conser 99.1 3.2E-10 6.9E-15 97.3 8.3 110 68-185 42-155 (183)
115 PRK13943 protein-L-isoaspartat 99.1 1.8E-09 4E-14 100.3 13.9 101 67-183 79-180 (322)
116 TIGR01177 conserved hypothetic 99.1 1E-09 2.2E-14 102.6 12.2 109 67-183 181-294 (329)
117 TIGR00438 rrmJ cell division p 99.1 1.4E-09 3.1E-14 93.5 12.1 119 67-204 31-163 (188)
118 KOG1271 Methyltransferases [Ge 99.1 8.3E-10 1.8E-14 92.8 10.2 111 68-185 67-183 (227)
119 cd02440 AdoMet_MTases S-adenos 99.1 1.3E-09 2.8E-14 81.8 10.4 103 71-182 1-103 (107)
120 PHA03412 putative methyltransf 99.1 7.9E-10 1.7E-14 97.7 10.2 101 68-181 49-160 (241)
121 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 1E-09 2.3E-14 95.8 10.7 105 67-183 38-143 (223)
122 PF08704 GCD14: tRNA methyltra 99.1 2.1E-09 4.5E-14 96.2 12.3 120 66-202 38-161 (247)
123 KOG4300 Predicted methyltransf 99.1 5.6E-10 1.2E-14 95.6 8.1 98 69-181 77-180 (252)
124 TIGR00446 nop2p NOL1/NOP2/sun 99.1 4.6E-09 1E-13 95.2 14.7 113 67-185 70-201 (264)
125 PRK14903 16S rRNA methyltransf 99.1 4.1E-09 8.8E-14 102.0 15.1 114 67-185 236-368 (431)
126 PRK13168 rumA 23S rRNA m(5)U19 99.0 6.3E-09 1.4E-13 101.1 16.4 102 68-183 297-400 (443)
127 PRK11088 rrmA 23S rRNA methylt 99.0 1.5E-09 3.3E-14 98.7 11.3 94 68-183 85-181 (272)
128 PRK05134 bifunctional 3-demeth 99.0 2E-09 4.3E-14 95.4 11.7 104 68-183 48-151 (233)
129 TIGR03587 Pse_Me-ase pseudamin 99.0 9.6E-10 2.1E-14 96.0 8.7 94 67-174 42-135 (204)
130 PRK03522 rumB 23S rRNA methylu 99.0 5E-09 1.1E-13 97.4 14.0 103 68-184 173-275 (315)
131 PRK14901 16S rRNA methyltransf 99.0 5E-09 1.1E-13 101.5 14.4 131 67-202 251-402 (434)
132 PRK14904 16S rRNA methyltransf 99.0 4.2E-09 9.1E-14 102.4 13.6 114 67-187 249-381 (445)
133 TIGR02085 meth_trns_rumB 23S r 99.0 1.2E-08 2.5E-13 97.1 16.3 117 68-204 233-349 (374)
134 KOG2904 Predicted methyltransf 99.0 1E-08 2.2E-13 91.4 14.4 160 20-184 100-286 (328)
135 TIGR01983 UbiG ubiquinone bios 99.0 3.4E-09 7.4E-14 93.1 11.3 105 68-183 45-149 (224)
136 TIGR00479 rumA 23S rRNA (uraci 99.0 2.5E-08 5.4E-13 96.5 18.3 103 67-182 291-395 (431)
137 PLN02336 phosphoethanolamine N 99.0 1.1E-09 2.5E-14 107.1 9.0 105 68-182 37-141 (475)
138 PF13489 Methyltransf_23: Meth 99.0 1.8E-09 3.9E-14 89.3 8.5 96 67-184 21-116 (161)
139 KOG2899 Predicted methyltransf 99.0 3.8E-09 8.3E-14 92.5 10.5 111 68-182 58-208 (288)
140 PTZ00146 fibrillarin; Provisio 99.0 2.6E-08 5.7E-13 90.8 16.4 149 66-230 130-286 (293)
141 TIGR02716 C20_methyl_CrtF C-20 99.0 2.9E-09 6.2E-14 98.4 10.0 107 67-183 148-254 (306)
142 PF03848 TehB: Tellurite resis 99.0 1.6E-09 3.6E-14 93.2 7.5 104 67-182 29-132 (192)
143 KOG3010 Methyltransferase [Gen 99.0 2.2E-09 4.9E-14 94.0 8.1 106 66-183 31-137 (261)
144 COG0742 N6-adenine-specific me 99.0 1.1E-08 2.4E-13 87.3 12.1 110 68-185 43-156 (187)
145 TIGR03840 TMPT_Se_Te thiopurin 98.9 3.4E-09 7.4E-14 93.1 9.1 110 67-181 33-150 (213)
146 TIGR02021 BchM-ChlM magnesium 98.9 7.1E-09 1.5E-13 91.1 11.0 101 68-181 55-156 (219)
147 TIGR00563 rsmB ribosomal RNA s 98.9 1.2E-08 2.7E-13 98.6 13.4 118 67-187 237-372 (426)
148 PRK04338 N(2),N(2)-dimethylgua 98.9 1.3E-08 2.9E-13 96.8 12.6 100 70-183 59-158 (382)
149 TIGR03438 probable methyltrans 98.9 7.4E-09 1.6E-13 95.6 10.6 112 67-183 62-177 (301)
150 PRK05031 tRNA (uracil-5-)-meth 98.9 6.7E-08 1.4E-12 91.5 17.0 100 69-183 207-320 (362)
151 PRK05785 hypothetical protein; 98.9 7.8E-09 1.7E-13 91.6 9.9 91 68-177 51-141 (226)
152 COG2263 Predicted RNA methylas 98.9 1.5E-08 3.2E-13 86.0 10.7 99 68-181 45-143 (198)
153 TIGR00308 TRM1 tRNA(guanine-26 98.9 1.9E-08 4.2E-13 95.3 12.6 102 69-183 45-147 (374)
154 PF07021 MetW: Methionine bios 98.9 7.4E-09 1.6E-13 88.5 8.7 96 67-181 12-107 (193)
155 PRK06202 hypothetical protein; 98.9 8.2E-09 1.8E-13 91.6 9.2 102 67-180 59-164 (232)
156 TIGR02143 trmA_only tRNA (urac 98.9 1.2E-07 2.5E-12 89.6 17.4 116 69-204 198-327 (353)
157 PRK01544 bifunctional N5-gluta 98.9 3.8E-08 8.2E-13 97.0 14.6 114 68-185 347-464 (506)
158 PRK07580 Mg-protoporphyrin IX 98.9 2.7E-08 5.9E-13 87.6 11.7 102 67-180 62-163 (230)
159 PRK13255 thiopurine S-methyltr 98.8 1E-08 2.2E-13 90.4 8.4 109 67-180 36-152 (218)
160 smart00138 MeTrc Methyltransfe 98.8 6E-09 1.3E-13 94.5 7.1 111 68-183 99-242 (264)
161 KOG1663 O-methyltransferase [S 98.8 1.6E-07 3.4E-12 82.0 14.5 106 68-183 73-183 (237)
162 PF02475 Met_10: Met-10+ like- 98.8 2.7E-08 5.9E-13 86.4 9.8 100 67-180 100-199 (200)
163 PF05891 Methyltransf_PK: AdoM 98.8 5.5E-09 1.2E-13 90.9 4.9 103 68-182 55-160 (218)
164 PLN02585 magnesium protoporphy 98.8 1.1E-07 2.5E-12 88.1 13.3 104 68-182 144-249 (315)
165 PF08003 Methyltransf_9: Prote 98.8 1.2E-07 2.6E-12 86.4 12.8 110 52-183 102-219 (315)
166 COG4976 Predicted methyltransf 98.8 2.8E-09 6E-14 92.8 2.1 101 69-185 126-227 (287)
167 PF00891 Methyltransf_2: O-met 98.7 4.2E-08 9.1E-13 87.5 6.5 99 67-183 99-199 (241)
168 PTZ00338 dimethyladenosine tra 98.6 3.3E-07 7.1E-12 84.4 12.1 100 68-182 36-136 (294)
169 PRK11727 23S rRNA mA1618 methy 98.6 7.2E-07 1.6E-11 82.9 14.2 85 68-154 114-201 (321)
170 KOG1709 Guanidinoacetate methy 98.6 1.8E-07 3.9E-12 80.8 9.3 106 67-182 100-205 (271)
171 TIGR02081 metW methionine bios 98.6 1.6E-07 3.5E-12 81.0 8.4 92 68-175 13-104 (194)
172 COG3963 Phospholipid N-methylt 98.6 5.4E-07 1.2E-11 75.0 10.8 107 68-185 48-158 (194)
173 PRK14896 ksgA 16S ribosomal RN 98.6 3.9E-07 8.5E-12 82.3 11.0 74 68-153 29-102 (258)
174 PF10294 Methyltransf_16: Puta 98.6 1.5E-07 3.2E-12 80.0 7.7 109 67-182 44-155 (173)
175 KOG1661 Protein-L-isoaspartate 98.6 1.5E-07 3.2E-12 81.1 7.5 118 52-182 67-192 (237)
176 PRK11933 yebU rRNA (cytosine-C 98.6 1.4E-06 3.1E-11 84.9 15.1 113 67-184 112-243 (470)
177 PF05185 PRMT5: PRMT5 arginine 98.6 1.5E-07 3.2E-12 91.3 8.1 106 69-182 187-296 (448)
178 PRK13256 thiopurine S-methyltr 98.6 3.5E-07 7.5E-12 80.9 9.4 111 67-181 42-161 (226)
179 PRK00274 ksgA 16S ribosomal RN 98.6 3.7E-07 8.1E-12 83.1 9.9 76 67-153 41-116 (272)
180 KOG1541 Predicted protein carb 98.6 3.9E-07 8.4E-12 79.1 9.1 123 69-205 51-181 (270)
181 COG2520 Predicted methyltransf 98.5 1E-05 2.2E-10 75.5 18.8 175 34-227 158-335 (341)
182 PF09445 Methyltransf_15: RNA 98.5 3E-07 6.5E-12 77.1 7.4 77 71-152 2-79 (163)
183 KOG3191 Predicted N6-DNA-methy 98.5 2.3E-06 5E-11 72.2 12.1 123 68-202 43-183 (209)
184 PF05219 DREV: DREV methyltran 98.5 8.1E-07 1.8E-11 79.2 9.9 93 68-182 94-187 (265)
185 COG0030 KsgA Dimethyladenosine 98.5 7.2E-07 1.6E-11 80.1 9.6 99 69-182 31-130 (259)
186 TIGR00755 ksgA dimethyladenosi 98.5 2.1E-06 4.5E-11 77.3 11.6 75 67-153 28-105 (253)
187 PF05724 TPMT: Thiopurine S-me 98.4 3.5E-07 7.5E-12 80.7 6.3 107 67-178 36-150 (218)
188 COG2265 TrmA SAM-dependent met 98.4 6.2E-06 1.3E-10 79.7 15.3 129 53-202 281-410 (432)
189 COG1041 Predicted DNA modifica 98.4 1.4E-06 3.1E-11 80.8 10.3 121 52-183 183-310 (347)
190 PF01170 UPF0020: Putative RNA 98.4 1.3E-06 2.8E-11 74.7 7.5 110 67-182 27-150 (179)
191 KOG2940 Predicted methyltransf 98.3 8.5E-07 1.8E-11 77.4 5.9 99 68-181 72-172 (325)
192 PF03291 Pox_MCEL: mRNA cappin 98.3 1.3E-06 2.9E-11 81.6 7.2 115 68-183 62-186 (331)
193 TIGR02987 met_A_Alw26 type II 98.3 4E-06 8.8E-11 83.2 10.2 131 68-202 31-215 (524)
194 PF05958 tRNA_U5-meth_tr: tRNA 98.3 1.6E-05 3.5E-10 75.0 13.5 129 69-220 197-339 (352)
195 PF05430 Methyltransf_30: S-ad 98.2 2.9E-06 6.2E-11 68.2 6.6 93 122-230 31-123 (124)
196 PRK00050 16S rRNA m(4)C1402 me 98.2 1E-05 2.2E-10 74.4 10.4 77 68-150 19-98 (296)
197 TIGR00478 tly hemolysin TlyA f 98.2 1.3E-05 2.9E-10 71.0 10.8 67 38-107 47-113 (228)
198 PLN02232 ubiquinone biosynthes 98.2 3.6E-06 7.7E-11 70.6 6.6 81 96-183 1-81 (160)
199 KOG1975 mRNA cap methyltransfe 98.2 7.9E-06 1.7E-10 74.7 9.0 116 67-183 116-237 (389)
200 COG4076 Predicted RNA methylas 98.2 4.3E-06 9.3E-11 71.0 6.6 113 52-182 22-134 (252)
201 PRK01747 mnmC bifunctional tRN 98.2 1.3E-05 2.9E-10 81.7 11.1 114 68-183 57-206 (662)
202 PF01728 FtsJ: FtsJ-like methy 98.2 1.1E-05 2.3E-10 68.8 8.7 134 55-208 10-159 (181)
203 PF02527 GidB: rRNA small subu 98.1 3.2E-05 6.9E-10 66.4 11.6 114 71-201 51-164 (184)
204 KOG3420 Predicted RNA methylas 98.1 7.7E-06 1.7E-10 66.7 6.6 97 68-174 48-144 (185)
205 PRK10742 putative methyltransf 98.1 3.5E-05 7.6E-10 68.7 11.3 84 70-156 90-178 (250)
206 KOG1499 Protein arginine N-met 98.1 1.1E-05 2.4E-10 74.6 8.3 105 68-180 60-164 (346)
207 PF02384 N6_Mtase: N-6 DNA Met 98.1 4.6E-06 9.9E-11 77.2 5.7 115 67-183 45-183 (311)
208 PF13578 Methyltransf_24: Meth 98.1 2.2E-06 4.7E-11 66.5 2.9 98 73-182 1-104 (106)
209 COG0144 Sun tRNA and rRNA cyto 98.1 4.6E-05 1E-09 72.0 12.3 115 68-186 156-291 (355)
210 PF03059 NAS: Nicotianamine sy 98.1 4.1E-05 9E-10 69.5 11.3 109 68-183 120-230 (276)
211 PRK11783 rlmL 23S rRNA m(2)G24 98.1 2.4E-05 5.1E-10 80.4 10.7 113 68-183 190-347 (702)
212 KOG2361 Predicted methyltransf 98.0 8.1E-06 1.8E-10 71.9 5.6 108 68-183 71-183 (264)
213 KOG0820 Ribosomal RNA adenine 98.0 2.7E-05 5.8E-10 69.8 7.9 79 67-154 57-135 (315)
214 KOG3178 Hydroxyindole-O-methyl 97.9 2E-05 4.3E-10 73.1 6.3 91 69-181 178-273 (342)
215 KOG1500 Protein arginine N-met 97.9 4E-05 8.6E-10 70.5 7.4 106 68-183 177-282 (517)
216 PF02005 TRM: N2,N2-dimethylgu 97.9 7.5E-05 1.6E-09 71.1 9.4 104 69-183 50-154 (377)
217 PRK04148 hypothetical protein; 97.9 4.8E-05 1E-09 61.7 6.7 68 68-149 16-84 (134)
218 PF01861 DUF43: Protein of unk 97.8 0.00016 3.5E-09 64.0 10.5 99 68-177 44-142 (243)
219 KOG2915 tRNA(1-methyladenosine 97.8 0.00017 3.7E-09 64.7 10.6 119 67-202 104-225 (314)
220 COG0293 FtsJ 23S rRNA methylas 97.8 0.0003 6.6E-09 61.0 12.0 122 67-208 44-179 (205)
221 KOG0822 Protein kinase inhibit 97.8 0.00014 2.9E-09 70.6 10.4 111 69-188 368-483 (649)
222 PF00398 RrnaAD: Ribosomal RNA 97.8 3.4E-05 7.3E-10 69.9 6.1 100 68-182 30-133 (262)
223 PF01739 CheR: CheR methyltran 97.8 4.9E-05 1.1E-09 65.9 6.3 110 68-182 31-174 (196)
224 PF12147 Methyltransf_20: Puta 97.8 0.00031 6.7E-09 63.8 11.5 117 67-189 134-254 (311)
225 COG0357 GidB Predicted S-adeno 97.7 0.00062 1.4E-08 59.7 12.2 98 69-181 68-166 (215)
226 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.7 0.00041 8.8E-09 63.6 11.1 115 68-186 85-222 (283)
227 COG1867 TRM1 N2,N2-dimethylgua 97.7 0.00037 8E-09 65.2 10.5 102 69-183 53-154 (380)
228 PF01269 Fibrillarin: Fibrilla 97.7 0.00045 9.7E-09 60.6 10.4 122 67-204 72-205 (229)
229 PF08123 DOT1: Histone methyla 97.6 0.00034 7.5E-09 61.1 9.1 106 67-181 41-156 (205)
230 COG0116 Predicted N6-adenine-s 97.6 0.0003 6.5E-09 66.4 8.7 108 70-183 193-344 (381)
231 PF06080 DUF938: Protein of un 97.6 0.00018 4E-09 62.4 6.8 110 71-183 28-141 (204)
232 PRK10611 chemotaxis methyltran 97.5 0.00021 4.5E-09 65.5 6.4 111 68-182 115-261 (287)
233 KOG2730 Methylase [General fun 97.5 0.00055 1.2E-08 59.7 7.9 77 68-149 94-172 (263)
234 COG1352 CheR Methylase of chem 97.4 0.0005 1.1E-08 62.4 7.5 107 68-182 96-240 (268)
235 PF05148 Methyltransf_8: Hypot 97.4 0.00012 2.5E-09 63.7 3.0 105 67-200 71-176 (219)
236 PF04816 DUF633: Family of unk 97.4 0.00086 1.9E-08 58.6 8.5 101 72-183 1-101 (205)
237 TIGR00006 S-adenosyl-methyltra 97.3 0.0021 4.5E-08 59.4 10.7 78 68-150 20-100 (305)
238 PF03141 Methyltransf_29: Puta 97.3 0.00099 2.2E-08 64.7 8.8 129 41-187 89-223 (506)
239 PRK11760 putative 23S rRNA C24 97.3 0.00097 2.1E-08 62.2 8.0 115 67-204 210-327 (357)
240 COG1889 NOP1 Fibrillarin-like 97.3 0.0066 1.4E-07 52.5 12.4 125 67-203 75-205 (231)
241 KOG1562 Spermidine synthase [A 97.3 0.00025 5.4E-09 64.4 3.9 160 8-183 120-293 (337)
242 PF07942 N2227: N2227-like pro 97.3 0.0011 2.4E-08 60.1 8.1 111 68-185 56-203 (270)
243 KOG3115 Methyltransferase-like 97.2 0.0022 4.8E-08 55.4 8.9 113 70-183 62-183 (249)
244 TIGR01444 fkbM_fam methyltrans 97.2 0.00099 2.2E-08 54.0 6.6 56 72-131 2-57 (143)
245 PF09243 Rsm22: Mitochondrial 97.2 0.0034 7.4E-08 57.3 10.2 47 68-114 33-80 (274)
246 KOG2187 tRNA uracil-5-methyltr 97.1 0.0027 5.9E-08 61.7 8.9 103 67-181 382-488 (534)
247 COG0500 SmtA SAM-dependent met 97.0 0.0083 1.8E-07 46.7 10.1 102 72-184 52-156 (257)
248 COG0275 Predicted S-adenosylme 97.0 0.0059 1.3E-07 55.9 10.1 89 54-150 12-104 (314)
249 TIGR03439 methyl_EasF probable 97.0 0.0078 1.7E-07 56.1 11.2 112 67-183 75-197 (319)
250 COG3897 Predicted methyltransf 96.9 0.0017 3.8E-08 55.7 5.4 102 68-187 79-181 (218)
251 COG2384 Predicted SAM-dependen 96.9 0.0069 1.5E-07 53.0 9.1 117 68-198 16-132 (226)
252 PF01795 Methyltransf_5: MraW 96.9 0.0036 7.9E-08 57.8 7.7 88 55-150 10-101 (310)
253 PRK11524 putative methyltransf 96.9 0.0038 8.3E-08 57.2 7.7 64 120-183 5-80 (284)
254 KOG3987 Uncharacterized conser 96.8 0.00054 1.2E-08 59.3 1.7 88 68-181 112-205 (288)
255 PF04445 SAM_MT: Putative SAM- 96.8 0.0021 4.5E-08 57.1 5.4 82 70-154 77-163 (234)
256 COG1189 Predicted rRNA methyla 96.8 0.0095 2.1E-07 52.8 9.3 108 55-181 68-176 (245)
257 PF04989 CmcI: Cephalosporin h 96.8 0.01 2.2E-07 51.7 9.1 116 50-182 20-146 (206)
258 COG1063 Tdh Threonine dehydrog 96.8 0.017 3.6E-07 54.6 11.4 98 69-183 169-269 (350)
259 KOG1253 tRNA methyltransferase 96.8 0.002 4.3E-08 62.3 5.1 105 68-183 109-216 (525)
260 PF13679 Methyltransf_32: Meth 96.7 0.0054 1.2E-07 50.1 6.9 76 67-147 24-104 (141)
261 KOG3201 Uncharacterized conser 96.6 0.0028 6.1E-08 52.8 4.3 121 55-182 14-139 (201)
262 PF04672 Methyltransf_19: S-ad 96.6 0.018 3.9E-07 52.1 9.8 126 68-201 68-208 (267)
263 KOG3045 Predicted RNA methylas 96.5 0.0059 1.3E-07 54.7 5.9 103 67-200 179-282 (325)
264 PF07091 FmrO: Ribosomal RNA m 96.5 0.0071 1.5E-07 54.0 6.2 74 67-148 104-177 (251)
265 COG5459 Predicted rRNA methyla 96.4 0.0028 6.1E-08 59.0 3.6 110 68-182 113-224 (484)
266 PTZ00357 methyltransferase; Pr 96.4 0.016 3.5E-07 58.3 8.9 106 71-178 703-830 (1072)
267 PF05971 Methyltransf_10: Prot 96.4 0.0082 1.8E-07 55.3 6.5 81 69-153 103-188 (299)
268 COG1064 AdhP Zn-dependent alco 96.4 0.027 5.9E-07 52.7 10.0 93 68-183 166-259 (339)
269 KOG2198 tRNA cytosine-5-methyl 96.3 0.035 7.6E-07 52.1 10.2 135 66-204 153-319 (375)
270 PRK09424 pntA NAD(P) transhydr 96.3 0.035 7.6E-07 54.9 10.8 109 68-182 164-284 (509)
271 PRK13699 putative methylase; P 96.3 0.007 1.5E-07 53.7 5.3 58 125-182 3-71 (227)
272 KOG4589 Cell division protein 96.2 0.06 1.3E-06 46.1 10.3 118 68-204 69-201 (232)
273 KOG1122 tRNA and rRNA cytosine 96.2 0.034 7.3E-07 53.1 9.7 116 68-187 241-375 (460)
274 PF06962 rRNA_methylase: Putat 96.2 0.021 4.5E-07 46.8 7.0 86 94-183 1-92 (140)
275 KOG2352 Predicted spermine/spe 96.2 0.025 5.3E-07 54.9 8.6 104 70-182 50-160 (482)
276 PF10354 DUF2431: Domain of un 96.1 0.02 4.4E-07 48.3 6.9 107 73-183 1-125 (166)
277 PRK09880 L-idonate 5-dehydroge 96.0 0.055 1.2E-06 50.5 10.1 97 68-183 169-266 (343)
278 cd08283 FDH_like_1 Glutathione 96.0 0.061 1.3E-06 51.1 10.6 109 68-183 184-306 (386)
279 TIGR00518 alaDH alanine dehydr 96.0 0.098 2.1E-06 49.8 11.7 99 68-181 166-265 (370)
280 COG1568 Predicted methyltransf 95.9 0.037 7.9E-07 50.2 8.0 105 68-182 152-259 (354)
281 KOG0024 Sorbitol dehydrogenase 95.9 0.057 1.2E-06 50.0 9.4 101 68-181 169-271 (354)
282 PRK10309 galactitol-1-phosphat 95.8 0.099 2.2E-06 48.7 10.8 99 68-182 160-259 (347)
283 TIGR03451 mycoS_dep_FDH mycoth 95.7 0.093 2E-06 49.2 10.5 99 68-183 176-276 (358)
284 cd00315 Cyt_C5_DNA_methylase C 95.7 0.027 5.9E-07 51.4 6.4 120 71-203 2-134 (275)
285 PRK05562 precorrin-2 dehydroge 95.6 0.075 1.6E-06 47.0 8.7 107 51-184 7-117 (223)
286 COG0286 HsdM Type I restrictio 95.5 0.11 2.3E-06 51.4 10.4 121 56-181 176-324 (489)
287 cd08281 liver_ADH_like1 Zinc-d 95.5 0.11 2.3E-06 49.1 10.1 99 68-183 191-290 (371)
288 KOG1596 Fibrillarin and relate 95.4 0.099 2.1E-06 46.5 8.6 120 67-202 155-285 (317)
289 KOG1269 SAM-dependent methyltr 95.4 0.025 5.4E-07 53.6 5.2 103 68-181 110-213 (364)
290 PF01210 NAD_Gly3P_dh_N: NAD-d 95.1 0.063 1.4E-06 44.6 6.4 143 71-230 1-152 (157)
291 PF02254 TrkA_N: TrkA-N domain 95.1 0.21 4.6E-06 38.7 9.1 94 72-185 1-98 (116)
292 COG0686 Ald Alanine dehydrogen 95.1 0.21 4.6E-06 46.1 10.0 99 68-181 167-266 (371)
293 TIGR03366 HpnZ_proposed putati 95.1 0.31 6.8E-06 44.0 11.3 97 68-183 120-218 (280)
294 PF00107 ADH_zinc_N: Zinc-bind 95.1 0.061 1.3E-06 42.5 5.9 88 78-183 1-89 (130)
295 cd08293 PTGR2 Prostaglandin re 94.9 0.2 4.3E-06 46.4 9.8 96 70-182 156-253 (345)
296 COG4121 Uncharacterized conser 94.9 0.03 6.6E-07 50.2 4.1 113 68-182 58-207 (252)
297 TIGR00561 pntA NAD(P) transhyd 94.9 0.23 4.9E-06 49.2 10.5 106 68-180 163-281 (511)
298 cd08239 THR_DH_like L-threonin 94.8 0.28 6E-06 45.4 10.4 98 68-183 163-262 (339)
299 PHA01634 hypothetical protein 94.8 0.067 1.4E-06 43.0 5.2 75 68-152 28-102 (156)
300 PF03269 DUF268: Caenorhabditi 94.8 0.11 2.3E-06 43.6 6.5 102 69-183 2-111 (177)
301 PRK09260 3-hydroxybutyryl-CoA 94.8 0.089 1.9E-06 48.1 6.8 103 70-185 2-119 (288)
302 PF03721 UDPG_MGDP_dh_N: UDP-g 94.7 0.52 1.1E-05 40.4 11.0 137 71-218 2-153 (185)
303 cd05188 MDR Medium chain reduc 94.7 0.39 8.4E-06 42.2 10.6 99 67-183 133-232 (271)
304 KOG4058 Uncharacterized conser 94.6 0.036 7.7E-07 45.7 3.3 76 55-134 58-134 (199)
305 cd05278 FDH_like Formaldehyde 94.5 0.37 8.1E-06 44.5 10.5 98 68-182 167-266 (347)
306 PF07279 DUF1442: Protein of u 94.4 0.58 1.3E-05 41.0 10.7 110 55-181 30-146 (218)
307 cd08230 glucose_DH Glucose deh 94.4 0.33 7.2E-06 45.4 10.0 94 68-183 172-269 (355)
308 cd08254 hydroxyacyl_CoA_DH 6-h 94.4 0.36 7.9E-06 44.2 10.2 99 67-183 164-263 (338)
309 PF14314 Methyltrans_Mon: Viru 94.4 0.15 3.3E-06 51.8 8.0 159 68-230 322-500 (675)
310 KOG1099 SAM-dependent methyltr 94.4 0.38 8.2E-06 42.6 9.4 140 68-230 41-204 (294)
311 TIGR01202 bchC 2-desacetyl-2-h 94.3 0.24 5.2E-06 45.6 8.6 86 68-182 144-230 (308)
312 PF04378 RsmJ: Ribosomal RNA s 94.3 0.44 9.5E-06 42.7 9.8 117 73-203 62-182 (245)
313 PLN02740 Alcohol dehydrogenase 94.2 0.47 1E-05 45.0 10.6 99 67-182 197-299 (381)
314 cd08294 leukotriene_B4_DH_like 94.1 0.52 1.1E-05 43.1 10.4 97 67-182 142-240 (329)
315 COG0604 Qor NADPH:quinone redu 94.1 0.39 8.5E-06 44.9 9.7 98 67-183 141-241 (326)
316 PF11968 DUF3321: Putative met 94.1 0.091 2E-06 46.0 4.9 109 69-200 52-172 (219)
317 PLN02827 Alcohol dehydrogenase 94.0 0.48 1E-05 45.0 10.2 99 67-182 192-294 (378)
318 TIGR02356 adenyl_thiF thiazole 93.9 0.23 5E-06 43.1 7.3 34 68-101 20-54 (202)
319 TIGR03201 dearomat_had 6-hydro 93.8 0.53 1.1E-05 43.9 10.1 99 68-183 166-272 (349)
320 KOG0821 Predicted ribosomal RN 93.8 0.056 1.2E-06 47.5 3.0 60 69-134 51-110 (326)
321 cd08285 NADP_ADH NADP(H)-depen 93.7 0.69 1.5E-05 43.0 10.7 99 67-182 165-265 (351)
322 TIGR02825 B4_12hDH leukotriene 93.7 0.75 1.6E-05 42.3 10.8 97 67-182 137-236 (325)
323 PLN03154 putative allyl alcoho 93.7 0.67 1.4E-05 43.4 10.5 98 67-182 157-257 (348)
324 cd05285 sorbitol_DH Sorbitol d 93.5 0.79 1.7E-05 42.5 10.7 99 67-182 161-264 (343)
325 PRK05808 3-hydroxybutyryl-CoA 93.3 0.24 5.3E-06 45.0 6.6 102 70-185 4-120 (282)
326 PF06460 NSP13: Coronavirus NS 93.2 0.69 1.5E-05 41.7 9.0 151 52-230 43-208 (299)
327 cd08295 double_bond_reductase_ 93.2 1.1 2.3E-05 41.5 11.1 98 67-182 150-250 (338)
328 PRK07066 3-hydroxybutyryl-CoA 93.2 0.5 1.1E-05 44.1 8.7 103 69-184 7-120 (321)
329 cd08232 idonate-5-DH L-idonate 93.1 0.67 1.5E-05 42.7 9.5 96 68-182 165-261 (339)
330 PLN02353 probable UDP-glucose 93.1 2.2 4.7E-05 42.1 13.2 139 70-218 2-158 (473)
331 cd08238 sorbose_phosphate_red 93.1 1.4 3E-05 42.2 11.9 103 69-182 176-287 (410)
332 PRK06130 3-hydroxybutyryl-CoA 93.0 0.63 1.4E-05 42.9 9.1 102 69-183 4-115 (311)
333 KOG2078 tRNA modification enzy 93.0 0.4 8.6E-06 46.1 7.6 102 27-137 212-314 (495)
334 KOG2671 Putative RNA methylase 92.9 0.12 2.5E-06 48.3 3.9 111 67-182 207-353 (421)
335 PF01555 N6_N4_Mtase: DNA meth 92.9 0.16 3.5E-06 43.8 4.7 52 57-110 180-231 (231)
336 cd05279 Zn_ADH1 Liver alcohol 92.8 1.2 2.7E-05 41.8 11.0 98 68-182 183-284 (365)
337 PRK05597 molybdopterin biosynt 92.8 0.43 9.3E-06 45.2 7.8 35 68-102 27-62 (355)
338 KOG1501 Arginine N-methyltrans 92.8 0.12 2.7E-06 49.6 4.0 103 71-180 69-171 (636)
339 PF01234 NNMT_PNMT_TEMT: NNMT/ 92.7 0.051 1.1E-06 49.0 1.2 113 68-183 56-199 (256)
340 cd01492 Aos1_SUMO Ubiquitin ac 92.6 0.72 1.6E-05 39.9 8.4 32 69-102 21-55 (197)
341 PRK12475 thiamine/molybdopteri 92.6 0.41 8.9E-06 45.0 7.3 77 68-148 23-122 (338)
342 cd08233 butanediol_DH_like (2R 92.6 1.2 2.6E-05 41.4 10.5 100 67-183 171-272 (351)
343 PRK11064 wecC UDP-N-acetyl-D-m 92.6 1.7 3.6E-05 42.1 11.7 111 70-193 4-129 (415)
344 PF05711 TylF: Macrocin-O-meth 92.6 0.94 2E-05 40.7 9.2 107 67-183 73-212 (248)
345 cd08286 FDH_like_ADH2 formalde 92.6 1.6 3.6E-05 40.3 11.3 97 67-182 165-265 (345)
346 PF01408 GFO_IDH_MocA: Oxidore 92.5 3.6 7.7E-05 31.7 11.5 108 71-203 2-112 (120)
347 cd01487 E1_ThiF_like E1_ThiF_l 92.5 0.48 1E-05 40.1 6.9 32 71-102 1-33 (174)
348 PLN02545 3-hydroxybutyryl-CoA 92.5 0.53 1.1E-05 43.1 7.7 103 69-185 4-121 (295)
349 PRK10637 cysG siroheme synthas 92.5 0.71 1.5E-05 45.2 9.0 77 59-152 2-82 (457)
350 PRK03562 glutathione-regulated 92.4 1.2 2.6E-05 45.5 10.8 97 69-184 400-499 (621)
351 PRK08618 ornithine cyclodeamin 92.4 3.1 6.7E-05 38.8 12.8 136 25-186 86-223 (325)
352 cd01485 E1-1_like Ubiquitin ac 92.4 0.87 1.9E-05 39.4 8.5 32 69-102 19-53 (198)
353 KOG2798 Putative trehalase [Ca 92.4 0.32 6.9E-06 45.0 5.9 107 69-181 151-294 (369)
354 PRK07819 3-hydroxybutyryl-CoA 92.3 0.69 1.5E-05 42.4 8.3 102 70-185 6-123 (286)
355 TIGR01470 cysG_Nterm siroheme 92.3 1.2 2.5E-05 38.9 9.2 89 68-183 8-100 (205)
356 cd08300 alcohol_DH_class_III c 92.3 1.7 3.7E-05 40.9 11.1 99 67-182 185-287 (368)
357 PRK15116 sulfur acceptor prote 92.3 0.72 1.6E-05 42.0 8.1 35 68-102 29-64 (268)
358 cd01491 Ube1_repeat1 Ubiquitin 92.2 0.8 1.7E-05 42.1 8.4 32 69-102 19-53 (286)
359 PRK07502 cyclohexadienyl dehyd 92.2 1.1 2.4E-05 41.2 9.5 91 69-181 6-98 (307)
360 COG4798 Predicted methyltransf 92.1 0.31 6.6E-06 42.2 5.2 114 66-183 46-166 (238)
361 PF01262 AlaDh_PNT_C: Alanine 92.1 0.41 8.9E-06 40.1 6.0 106 68-180 19-136 (168)
362 TIGR02818 adh_III_F_hyde S-(hy 92.0 1.7 3.6E-05 41.0 10.8 98 68-182 185-286 (368)
363 COG0287 TyrA Prephenate dehydr 92.0 1.7 3.7E-05 39.8 10.4 110 69-206 3-114 (279)
364 PRK08293 3-hydroxybutyryl-CoA 92.0 1.2 2.5E-05 40.7 9.3 102 70-184 4-121 (287)
365 cd08278 benzyl_alcohol_DH Benz 92.0 1.5 3.2E-05 41.2 10.3 99 68-183 186-285 (365)
366 cd08237 ribitol-5-phosphate_DH 92.0 1.4 3.1E-05 41.0 10.1 93 67-183 162-256 (341)
367 PRK06035 3-hydroxyacyl-CoA deh 91.9 0.83 1.8E-05 41.7 8.2 100 70-183 4-121 (291)
368 PRK11524 putative methyltransf 91.9 0.33 7.3E-06 44.4 5.6 57 56-114 196-252 (284)
369 PF00145 DNA_methylase: C-5 cy 91.8 5.1 0.00011 36.5 13.5 144 71-230 2-162 (335)
370 COG1062 AdhC Zn-dependent alco 91.7 2.9 6.2E-05 39.3 11.4 98 69-182 186-284 (366)
371 cd00755 YgdL_like Family of ac 91.6 0.63 1.4E-05 41.4 6.9 34 69-102 11-45 (231)
372 cd08277 liver_alcohol_DH_like 91.6 2.1 4.6E-05 40.2 11.0 100 67-183 183-286 (365)
373 PRK10669 putative cation:proto 91.6 1.4 3.1E-05 44.1 10.3 95 70-184 418-516 (558)
374 PRK08268 3-hydroxy-acyl-CoA de 91.6 0.79 1.7E-05 45.6 8.3 104 68-185 6-124 (507)
375 PRK03659 glutathione-regulated 91.6 1.5 3.3E-05 44.5 10.4 96 70-185 401-500 (601)
376 COG1565 Uncharacterized conser 91.4 0.72 1.6E-05 43.5 7.2 50 66-115 75-132 (370)
377 cd08236 sugar_DH NAD(P)-depend 91.2 3.4 7.4E-05 38.0 11.8 99 67-182 158-257 (343)
378 cd08301 alcohol_DH_plants Plan 91.2 2.3 5E-05 39.9 10.7 100 67-183 186-289 (369)
379 COG2961 ComJ Protein involved 91.2 2.9 6.4E-05 37.5 10.4 120 72-203 92-213 (279)
380 cd08234 threonine_DH_like L-th 91.1 1.8 3.8E-05 39.7 9.7 95 68-182 159-256 (334)
381 PF10237 N6-adenineMlase: Prob 91.1 2 4.3E-05 36.1 9.0 94 68-182 25-122 (162)
382 PRK08644 thiamine biosynthesis 91.1 0.92 2E-05 39.7 7.3 34 68-101 27-61 (212)
383 PRK07530 3-hydroxybutyryl-CoA 91.0 0.84 1.8E-05 41.7 7.3 103 69-185 4-121 (292)
384 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.0 1 2.2E-05 44.8 8.3 104 68-185 4-122 (503)
385 PF11599 AviRa: RRNA methyltra 90.8 0.36 7.7E-06 42.4 4.3 126 53-181 39-212 (246)
386 PF12692 Methyltransf_17: S-ad 90.8 0.15 3.3E-06 42.0 1.9 112 58-181 18-132 (160)
387 cd00757 ThiF_MoeB_HesA_family 90.7 0.83 1.8E-05 40.3 6.8 35 68-102 20-55 (228)
388 PF02737 3HCDH_N: 3-hydroxyacy 90.7 0.9 1.9E-05 38.7 6.7 101 71-185 1-116 (180)
389 PRK07688 thiamine/molybdopteri 90.7 1.1 2.3E-05 42.3 7.8 35 68-102 23-58 (339)
390 cd01483 E1_enzyme_family Super 90.7 1.9 4.2E-05 34.8 8.5 32 71-102 1-33 (143)
391 TIGR02819 fdhA_non_GSH formald 90.6 3.7 8.1E-05 39.2 11.7 107 67-183 184-299 (393)
392 KOG2015 NEDD8-activating compl 90.5 1.3 2.7E-05 41.3 7.7 98 70-177 41-157 (422)
393 TIGR00497 hsdM type I restrict 90.5 6.3 0.00014 39.1 13.5 110 70-181 219-353 (501)
394 COG1748 LYS9 Saccharopine dehy 90.5 2 4.2E-05 41.2 9.4 72 70-152 2-78 (389)
395 PF02636 Methyltransf_28: Puta 90.5 0.22 4.8E-06 44.6 3.0 46 69-114 19-72 (252)
396 PRK09496 trkA potassium transp 90.4 3.3 7.1E-05 40.0 11.3 74 68-152 230-307 (453)
397 PRK00066 ldh L-lactate dehydro 90.4 3.9 8.4E-05 38.1 11.3 108 67-182 4-121 (315)
398 PRK08328 hypothetical protein; 90.4 1 2.2E-05 40.0 7.0 35 68-102 26-61 (231)
399 COG1179 Dinucleotide-utilizing 90.3 1.5 3.3E-05 39.2 7.8 37 69-105 30-67 (263)
400 PRK08762 molybdopterin biosynt 90.1 0.8 1.7E-05 43.7 6.6 34 68-101 134-168 (376)
401 PRK06719 precorrin-2 dehydroge 90.1 1.4 3E-05 36.7 7.2 78 57-152 1-80 (157)
402 cd05288 PGDH Prostaglandin deh 90.0 3.5 7.5E-05 37.6 10.6 97 68-182 145-243 (329)
403 TIGR00675 dcm DNA-methyltransf 89.9 0.94 2E-05 42.1 6.7 117 72-202 1-130 (315)
404 PF03141 Methyltransf_29: Puta 89.9 0.6 1.3E-05 45.8 5.5 104 67-183 364-467 (506)
405 cd08261 Zn_ADH7 Alcohol dehydr 89.9 3.2 7E-05 38.1 10.3 98 67-182 158-257 (337)
406 TIGR02355 moeB molybdopterin s 89.9 1 2.2E-05 40.2 6.7 35 69-103 24-59 (240)
407 PRK10083 putative oxidoreducta 89.8 3.3 7.2E-05 38.1 10.3 97 68-182 160-258 (339)
408 PLN02586 probable cinnamyl alc 89.7 3.6 7.8E-05 38.7 10.6 92 68-182 183-277 (360)
409 TIGR02822 adh_fam_2 zinc-bindi 89.7 2.8 6E-05 38.9 9.7 88 68-182 165-253 (329)
410 cd05290 LDH_3 A subgroup of L- 89.6 9.2 0.0002 35.4 13.0 105 71-182 1-118 (307)
411 cd08240 6_hydroxyhexanoate_dh_ 89.5 3.3 7.1E-05 38.4 10.1 98 68-182 175-273 (350)
412 cd01493 APPBP1_RUB Ubiquitin a 89.5 1.8 4E-05 42.0 8.5 32 69-102 20-54 (425)
413 PF02826 2-Hacid_dh_C: D-isome 89.5 9.5 0.00021 32.1 12.1 106 68-202 35-143 (178)
414 COG0677 WecC UDP-N-acetyl-D-ma 89.5 11 0.00023 36.4 13.2 111 70-191 10-136 (436)
415 cd08263 Zn_ADH10 Alcohol dehyd 89.5 3.6 7.8E-05 38.5 10.4 99 68-183 187-287 (367)
416 PTZ00117 malate dehydrogenase; 89.5 5.5 0.00012 37.1 11.5 105 68-181 4-120 (319)
417 PF11899 DUF3419: Protein of u 89.4 0.7 1.5E-05 44.2 5.5 59 122-183 275-334 (380)
418 cd05291 HicDH_like L-2-hydroxy 89.4 9.6 0.00021 35.1 12.9 106 70-182 1-116 (306)
419 KOG2793 Putative N2,N2-dimethy 89.3 2.4 5.1E-05 38.1 8.5 104 68-181 86-197 (248)
420 PF02719 Polysacc_synt_2: Poly 89.0 1.7 3.7E-05 40.1 7.5 76 72-151 1-86 (293)
421 cd05281 TDH Threonine dehydrog 88.9 5.2 0.00011 36.9 11.0 100 67-183 162-262 (341)
422 TIGR02371 ala_DH_arch alanine 88.9 5.7 0.00012 37.1 11.1 78 64-152 123-202 (325)
423 cd00401 AdoHcyase S-adenosyl-L 88.9 3.5 7.5E-05 39.9 9.9 87 68-183 201-289 (413)
424 TIGR00936 ahcY adenosylhomocys 88.5 19 0.00041 34.9 14.6 87 68-183 194-282 (406)
425 PRK13699 putative methylase; P 88.4 1.1 2.3E-05 39.7 5.7 47 67-115 162-208 (227)
426 TIGR02437 FadB fatty oxidation 88.4 1.9 4.1E-05 44.8 8.2 103 69-185 313-430 (714)
427 PTZ00082 L-lactate dehydrogena 88.4 7.9 0.00017 36.1 11.7 77 69-153 6-85 (321)
428 TIGR00692 tdh L-threonine 3-de 88.3 6 0.00013 36.5 10.9 100 67-183 160-261 (340)
429 cd08265 Zn_ADH3 Alcohol dehydr 88.1 5.6 0.00012 37.6 10.8 100 67-182 202-306 (384)
430 PRK05690 molybdopterin biosynt 88.0 3.4 7.4E-05 36.9 8.7 35 68-102 31-66 (245)
431 PRK06223 malate dehydrogenase; 88.0 6.1 0.00013 36.3 10.6 105 70-182 3-118 (307)
432 TIGR02354 thiF_fam2 thiamine b 87.9 5.1 0.00011 34.7 9.5 34 68-101 20-54 (200)
433 TIGR01408 Ube1 ubiquitin-activ 87.9 2 4.3E-05 46.3 8.2 51 50-102 3-58 (1008)
434 cd08255 2-desacetyl-2-hydroxye 87.8 5.1 0.00011 35.6 9.9 94 67-183 96-190 (277)
435 KOG1331 Predicted methyltransf 87.7 0.22 4.8E-06 45.3 0.9 98 69-183 46-143 (293)
436 cd08287 FDH_like_ADH3 formalde 87.5 6.2 0.00013 36.3 10.5 100 67-183 167-268 (345)
437 PRK05600 thiamine biosynthesis 87.5 2.3 5.1E-05 40.5 7.7 34 68-101 40-74 (370)
438 cd08296 CAD_like Cinnamyl alco 87.5 6.2 0.00013 36.3 10.5 96 68-183 163-259 (333)
439 PF13241 NAD_binding_7: Putati 87.5 5.1 0.00011 30.6 8.3 87 68-184 6-92 (103)
440 PRK05396 tdh L-threonine 3-deh 87.4 5.7 0.00012 36.6 10.2 99 68-183 163-263 (341)
441 PF01488 Shikimate_DH: Shikima 87.4 6.8 0.00015 31.5 9.4 73 68-153 11-86 (135)
442 PF00106 adh_short: short chai 87.2 7.7 0.00017 31.4 9.9 78 70-153 1-91 (167)
443 cd08231 MDR_TM0436_like Hypoth 87.1 6.7 0.00014 36.5 10.5 98 68-182 177-279 (361)
444 COG0270 Dcm Site-specific DNA 87.0 2.7 5.8E-05 39.3 7.7 123 69-203 3-138 (328)
445 PRK06141 ornithine cyclodeamin 87.0 16 0.00034 33.9 12.8 111 25-151 84-198 (314)
446 PRK11730 fadB multifunctional 86.8 2.6 5.6E-05 43.8 8.1 102 70-185 314-430 (715)
447 TIGR03693 ocin_ThiF_like putat 86.7 6.2 0.00013 40.0 10.4 75 68-153 128-215 (637)
448 COG1086 Predicted nucleoside-d 86.7 4.6 9.9E-05 40.4 9.3 81 68-152 249-335 (588)
449 cd01488 Uba3_RUB Ubiquitin act 86.7 1.8 4E-05 39.8 6.3 31 71-103 1-34 (291)
450 COG0569 TrkA K+ transport syst 86.6 4.4 9.6E-05 35.7 8.5 72 70-152 1-76 (225)
451 cd05213 NAD_bind_Glutamyl_tRNA 86.6 8.7 0.00019 35.6 10.8 94 68-186 177-275 (311)
452 PRK07102 short chain dehydroge 86.5 11 0.00024 32.7 11.1 75 70-150 2-84 (243)
453 PRK09496 trkA potassium transp 86.5 9.8 0.00021 36.7 11.6 70 71-152 2-75 (453)
454 cd08243 quinone_oxidoreductase 86.4 9.2 0.0002 34.3 10.8 95 67-182 141-237 (320)
455 PF06859 Bin3: Bicoid-interact 86.1 0.31 6.7E-06 38.1 0.8 39 142-183 1-44 (110)
456 TIGR02441 fa_ox_alpha_mit fatt 86.1 1.9 4E-05 45.0 6.7 102 70-185 336-452 (737)
457 PRK07417 arogenate dehydrogena 86.1 4 8.7E-05 37.0 8.2 89 71-185 2-92 (279)
458 PRK09422 ethanol-active dehydr 86.1 12 0.00026 34.2 11.6 97 67-182 161-260 (338)
459 cd08284 FDH_like_2 Glutathione 86.0 11 0.00024 34.6 11.3 96 68-183 167-266 (344)
460 PRK06949 short chain dehydroge 86.0 17 0.00038 31.6 12.2 77 68-151 8-95 (258)
461 cd08252 AL_MDR Arginate lyase 85.9 9.8 0.00021 34.7 10.9 96 69-182 150-247 (336)
462 PRK07340 ornithine cyclodeamin 85.9 12 0.00026 34.6 11.3 76 66-153 122-199 (304)
463 PLN02702 L-idonate 5-dehydroge 85.8 6.3 0.00014 36.8 9.7 98 68-182 181-284 (364)
464 PF03807 F420_oxidored: NADP o 85.7 5 0.00011 29.7 7.3 87 71-180 1-91 (96)
465 PRK10458 DNA cytosine methylas 85.7 3.8 8.3E-05 40.3 8.3 125 69-203 88-250 (467)
466 cd05292 LDH_2 A subgroup of L- 85.5 19 0.0004 33.3 12.4 103 71-182 2-115 (308)
467 PRK11154 fadJ multifunctional 85.5 3.1 6.7E-05 43.2 7.9 104 69-185 309-427 (708)
468 PRK06129 3-hydroxyacyl-CoA deh 85.2 4 8.8E-05 37.6 7.9 98 70-180 3-115 (308)
469 cd08245 CAD Cinnamyl alcohol d 85.1 13 0.00028 33.9 11.2 94 67-182 161-255 (330)
470 COG5379 BtaA S-adenosylmethion 85.0 1.8 3.9E-05 39.9 5.1 74 67-149 62-139 (414)
471 PF00072 Response_reg: Respons 84.9 8.4 0.00018 28.7 8.4 78 95-183 1-78 (112)
472 PLN00016 RNA-binding protein; 84.8 4.7 0.0001 38.1 8.3 81 68-149 51-137 (378)
473 cd08235 iditol_2_DH_like L-idi 84.7 10 0.00022 34.8 10.4 100 67-183 164-265 (343)
474 PRK05225 ketol-acid reductoiso 84.7 3.4 7.3E-05 40.5 7.2 91 68-183 35-131 (487)
475 cd08297 CAD3 Cinnamyl alcohol 84.7 11 0.00023 34.7 10.5 99 67-183 164-265 (341)
476 PF11312 DUF3115: Protein of u 84.6 0.96 2.1E-05 41.9 3.4 112 70-181 88-240 (315)
477 PRK08267 short chain dehydroge 84.5 11 0.00025 33.1 10.3 74 70-151 2-86 (260)
478 cd08279 Zn_ADH_class_III Class 84.3 8.9 0.00019 35.8 10.0 98 68-182 182-281 (363)
479 PRK07523 gluconate 5-dehydroge 84.3 17 0.00037 31.8 11.3 79 68-152 9-97 (255)
480 cd08262 Zn_ADH8 Alcohol dehydr 84.3 10 0.00022 34.8 10.2 98 67-183 160-264 (341)
481 PRK12921 2-dehydropantoate 2-r 84.0 6.4 0.00014 35.8 8.6 93 71-181 2-100 (305)
482 PRK15057 UDP-glucose 6-dehydro 83.9 34 0.00073 32.8 13.7 108 71-186 2-120 (388)
483 COG1648 CysG Siroheme synthase 83.8 2.6 5.5E-05 37.0 5.6 37 61-99 4-42 (210)
484 KOG1098 Putative SAM-dependent 83.8 2.3 4.9E-05 42.9 5.7 116 67-204 43-175 (780)
485 PRK06194 hypothetical protein; 83.7 17 0.00036 32.5 11.2 77 69-151 6-92 (287)
486 KOG0022 Alcohol dehydrogenase, 83.7 15 0.00033 34.3 10.6 99 68-181 192-292 (375)
487 PF03446 NAD_binding_2: NAD bi 83.6 14 0.00031 30.4 9.9 106 70-203 2-111 (163)
488 TIGR01763 MalateDH_bact malate 83.5 25 0.00053 32.5 12.3 104 70-182 2-117 (305)
489 TIGR00872 gnd_rel 6-phosphoglu 83.4 17 0.00037 33.3 11.2 90 71-184 2-93 (298)
490 PRK08306 dipicolinate synthase 83.4 13 0.00027 34.3 10.3 87 68-181 151-239 (296)
491 PRK08213 gluconate 5-dehydroge 83.4 17 0.00037 31.8 10.9 77 69-151 12-98 (259)
492 cd05284 arabinose_DH_like D-ar 83.3 13 0.00027 34.1 10.4 95 68-182 167-265 (340)
493 cd08282 PFDH_like Pseudomonas 83.0 20 0.00043 33.7 11.8 106 68-181 176-283 (375)
494 PRK08300 acetaldehyde dehydrog 82.9 8.1 0.00018 35.8 8.7 71 69-150 4-78 (302)
495 PRK08507 prephenate dehydrogen 82.9 6.4 0.00014 35.6 8.0 89 71-185 2-92 (275)
496 PF11899 DUF3419: Protein of u 82.9 2.7 5.9E-05 40.2 5.7 42 67-110 34-75 (380)
497 PRK12429 3-hydroxybutyrate deh 82.9 19 0.00041 31.3 11.0 77 69-151 4-90 (258)
498 cd08299 alcohol_DH_class_I_II_ 82.8 17 0.00036 34.3 11.2 99 68-183 190-292 (373)
499 TIGR00027 mthyl_TIGR00027 meth 82.8 17 0.00038 32.7 10.8 112 69-186 82-200 (260)
500 PRK12749 quinate/shikimate deh 82.7 17 0.00037 33.3 10.8 68 41-110 98-166 (288)
No 1
>PLN02366 spermidine synthase
Probab=100.00 E-value=7.2e-63 Score=453.59 Aligned_cols=282 Identities=65% Similarity=1.173 Sum_probs=251.8
Q ss_pred CCCCceEeeeeceEEEEeeCCcccEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccH
Q 037807 2 YLAGQAHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGG 81 (299)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~ 81 (299)
.|++.+++++++++|++++|+||+|+|++++.+|++|+|||.+|++++||+.|||||+|+|++.|+++++||+||||+|+
T Consensus 25 ~~~~~~~~~~v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~ 104 (308)
T PLN02366 25 MWPGEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGG 104 (308)
T ss_pred CCCCceEEEEEeeEEEeccCCCeeEEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCCC
Q 037807 82 ILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDLF 161 (299)
Q Consensus 82 ~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~ 161 (299)
+++++++++++.+|++||||++|++.||++|+..+.+++++|++++++|+++|+++.++++||+||+|+++|.+++..|+
T Consensus 105 ~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~ 184 (308)
T PLN02366 105 VLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELF 184 (308)
T ss_pred HHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhh
Confidence 99999999888999999999999999999998765567899999999999999986545789999999999998888999
Q ss_pred cHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCCceeeeEEeecccCCcceeEEecccCCCCCCCCCCC
Q 037807 162 EGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIH 241 (299)
Q Consensus 162 t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~w~~~~ask~~~~~~~~~~~ 241 (299)
+.+||+.++++|+|||++++|++++|...+.++.+.++++++|++.+.++.+.||+|++|.|||++||| +.+..++.+
T Consensus 185 t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~--~~~~~~~~~ 262 (308)
T PLN02366 185 EKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSK--EGPAVDFKH 262 (308)
T ss_pred HHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEEC--CCccccccc
Confidence 999999999999999999999999999999999999999999966788888999999999999999999 433333445
Q ss_pred CCCCCCccccccCCCCCCeeeCHHHHHHHHhcccHHHHHhhcccC
Q 037807 242 PINPIDPDQIFGVAKGPLKFYNSAEVHAAAFCLPTFAKKPAHSHI 286 (299)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~yy~~~~~h~~~f~lp~~~~~~l~~~~ 286 (299)
|.+..+.....+....+|||||+ ++|+++|+||+|+++.|+...
T Consensus 263 ~~~~~~~~~~~~~~~~~l~yy~~-~~h~~~f~lp~~~~~~l~~~~ 306 (308)
T PLN02366 263 PVNPIDKLEGAGKAKRPLKFYNS-EVHRAAFCLPSFAKRELESLL 306 (308)
T ss_pred cccccchhhhhhcccCCCeEECH-HHHHHHhcChHHHHHHHHhcc
Confidence 54443321111122356999999 999999999999999998654
No 2
>PRK00536 speE spermidine synthase; Provisional
Probab=100.00 E-value=2.5e-63 Score=444.94 Aligned_cols=254 Identities=18% Similarity=0.283 Sum_probs=224.4
Q ss_pred CCCCceEeeeeceEEEEeeCCcccEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccH
Q 037807 2 YLAGQAHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGG 81 (299)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~ 81 (299)
.+|+.+++++++++|++++|+||+|+|++++.|||+|+|| ..|++++|||+|||||+|+|++.|++|++||+||||+|+
T Consensus 7 ~~~~~~~~~~v~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIiGGGDGg 85 (262)
T PRK00536 7 ITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIVDGFDLE 85 (262)
T ss_pred cCCCceEEEEEEEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEEcCCchH
Confidence 4788999999999999999999999999999999999999 566799999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCCC
Q 037807 82 ILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDLF 161 (299)
Q Consensus 82 ~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~ 161 (299)
++||++||+ .+|++||||++|+++||+++|.++++++|||++++. ++.+...++||+||+|+..
T Consensus 86 ~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-----~~~~~~~~~fDVIIvDs~~--------- 149 (262)
T PRK00536 86 LAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-----QLLDLDIKKYDLIICLQEP--------- 149 (262)
T ss_pred HHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----hhhhccCCcCCEEEEcCCC---------
Confidence 999999997 499999999999999999999998889999999997 3433324789999999753
Q ss_pred cHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCCceeeeEEeecccCCcceeEEecccCCCCCCCCCCC
Q 037807 162 EGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIH 241 (299)
Q Consensus 162 t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~w~~~~ask~~~~~~~~~~~ 241 (299)
+++||+.|+++|+|||++++|++|+++..+.++.+.++++++| +.+.+|.++||+| |.|||++||| +. +
T Consensus 150 ~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F-~~v~~y~~~vp~~--g~wgf~~aS~--~~------~ 218 (262)
T PRK00536 150 DIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFF-SIAMPFVAPLRIL--SNKGYIYASF--KT------H 218 (262)
T ss_pred ChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhC-CceEEEEecCCCc--chhhhheecC--CC------C
Confidence 4899999999999999999999999999999999999999999 6788999999998 7999999999 31 2
Q ss_pred CCCCCCccccccCCCCCCeeeCHHHHHHHHhcccHHHHHhhcccC
Q 037807 242 PINPIDPDQIFGVAKGPLKFYNSAEVHAAAFCLPTFAKKPAHSHI 286 (299)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~yy~~~~~h~~~f~lp~~~~~~l~~~~ 286 (299)
|..+...++. .....|||||+ ++|+|+|+||+|++++|++..
T Consensus 219 p~~~~~~~~~--~~~~~lryy~~-~~h~a~F~lP~~v~~~l~~~~ 260 (262)
T PRK00536 219 PLKDLMLQKI--EALKSVRYYNE-DIHRAAFALPKNLQEVFKDNI 260 (262)
T ss_pred Cccchhhhhh--cccCCceeeCH-HHHHHHhcCcHHHHHHHHHhh
Confidence 3322222211 12234899999 999999999999999998654
No 3
>PRK00811 spermidine synthase; Provisional
Probab=100.00 E-value=1.2e-58 Score=422.87 Aligned_cols=273 Identities=36% Similarity=0.686 Sum_probs=242.8
Q ss_pred CCCCceEeeeeceEEEEeeCCcccEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccH
Q 037807 2 YLAGQAHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGG 81 (299)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~ 81 (299)
.+|+.+++++++++|++++|+||+|+|++++.+|++|+|||.+|+++++++.||||++|+|++.|+++++||+||||+|+
T Consensus 10 ~~~~~~~~~~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~VL~iG~G~G~ 89 (283)
T PRK00811 10 LTDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVLIIGGGDGG 89 (283)
T ss_pred cCCccceEEeeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCEEEEEecCchH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcC-CCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCC
Q 037807 82 ILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIG-YEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDL 160 (299)
Q Consensus 82 ~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~-~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l 160 (299)
+++++++++++.+|++||+|++|++.|+++++..+.+ ++++|++++++|+++|++.. +++||+||+|+++|.+++..|
T Consensus 90 ~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-~~~yDvIi~D~~dp~~~~~~l 168 (283)
T PRK00811 90 TLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-ENSFDVIIVDSTDPVGPAEGL 168 (283)
T ss_pred HHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-CCcccEEEECCCCCCCchhhh
Confidence 9999999988889999999999999999999876433 47899999999999999864 689999999999999888899
Q ss_pred CcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCCceeeeEEeecccCCcceeEEecccCCCCCCCCCC
Q 037807 161 FEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFI 240 (299)
Q Consensus 161 ~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~w~~~~ask~~~~~~~~~~ 240 (299)
++.+||+.++++|+|||++++|+++++...+.++.+.++++++| +.+.++...+|+||+|.|+|++||+ ..++. .
T Consensus 169 ~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F-~~v~~~~~~vp~~~~~~w~f~~as~--~~~~~--~ 243 (283)
T PRK00811 169 FTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVF-PIVRPYQAAIPTYPSGLWSFTFASK--NDDLK--F 243 (283)
T ss_pred hHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHC-CCEEEEEeECCcccCchheeEEeec--Ccccc--c
Confidence 99999999999999999999999999988889999999999999 6788888999999999999999998 32211 1
Q ss_pred CCCCCCCccccccCCCCCCeeeCHHHHHHHHhcccHHHHHhhc
Q 037807 241 HPINPIDPDQIFGVAKGPLKFYNSAEVHAAAFCLPTFAKKPAH 283 (299)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~yy~~~~~h~~~f~lp~~~~~~l~ 283 (299)
+|.+.+..+. .+. ..+|||||+ ++|+|+|+||+|+|++|+
T Consensus 244 ~~~~~~~~~~-~~~-~~~~~yy~~-~~h~~~f~lp~~~~~~~~ 283 (283)
T PRK00811 244 LPLDVIEARF-AER-GIKTRYYNP-ELHKAAFALPQFVKDALK 283 (283)
T ss_pred CccccchhhH-hhc-cCCCeEECH-HHHHHHhcCcHHHHHhhC
Confidence 2333332222 111 135999999 999999999999999874
No 4
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-59 Score=420.15 Aligned_cols=270 Identities=40% Similarity=0.729 Sum_probs=244.6
Q ss_pred CCceEeeeeceEEEEeeCCcccEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccHHH
Q 037807 4 AGQAHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGIL 83 (299)
Q Consensus 4 ~~~~~~~~~~~~l~~~~s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~ 83 (299)
|+.++.+++++++++++|+||+|.+++++.+|++|++||..|+++++++.||||++|+|+.+|++|++||+||+|+|+++
T Consensus 12 ~~~~~~~~v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~~pk~VLiiGgGdG~tl 91 (282)
T COG0421 12 PGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKRVLIIGGGDGGTL 91 (282)
T ss_pred ccccceeEeeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCCCCCeEEEECCCccHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCCCcH
Q 037807 84 REISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEG 163 (299)
Q Consensus 84 ~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ 163 (299)
|+++||++++++++||||++|+++||++|+..+.+..|||++++++|+.+|+++. .++||+||+|+++|.+|+..|++.
T Consensus 92 Revlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-~~~fDvIi~D~tdp~gp~~~Lft~ 170 (282)
T COG0421 92 REVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-EEKFDVIIVDSTDPVGPAEALFTE 170 (282)
T ss_pred HHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-CCcCCEEEEcCCCCCCcccccCCH
Confidence 9999999999999999999999999999999865545899999999999999987 569999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCCceeeeEEeecccCCcceeEEecccCCCCCCCCCCCCC
Q 037807 164 PFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIHPI 243 (299)
Q Consensus 164 ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~w~~~~ask~~~~~~~~~~~~~ 243 (299)
+||+.|+++|+++|++++|++|+|+..+.+..+.+.++++| +.+.+|...+|+|++|.|+|+++|+ +. .++.
T Consensus 171 eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf-~~~~~~~~~ipt~~~g~~~f~~~s~--~~-----~~~~ 242 (282)
T COG0421 171 EFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVF-SIVPPYVAPIPTYPSGFWGFIVASF--NK-----AHPL 242 (282)
T ss_pred HHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhc-cccccceeccceecCCceEEEEeec--CC-----CCcc
Confidence 99999999999999999999999999999999999999999 6788888999999999999999995 21 2344
Q ss_pred CCCCccccccCCCCCCeeeCHHHHHHHHhcccHHHHHhhc
Q 037807 244 NPIDPDQIFGVAKGPLKFYNSAEVHAAAFCLPTFAKKPAH 283 (299)
Q Consensus 244 ~~~~~~~~~~~~~~~~~yy~~~~~h~~~f~lp~~~~~~l~ 283 (299)
..++..+..+.....++|||+ ++|.++|+||+++++.++
T Consensus 243 ~~~~~~~~~~~~~~~~~yy~~-~~h~~~f~lp~~~~~~~~ 281 (282)
T COG0421 243 KSLDALQARALALLTLKYYNE-DIHDAAFALPKNLQDELK 281 (282)
T ss_pred cchhHHHHHHhhhhhhccCcH-HHhhhhhcCCcchhhhcc
Confidence 444333321122345699999 999999999999999875
No 5
>PLN02823 spermine synthase
Probab=100.00 E-value=2.1e-56 Score=414.61 Aligned_cols=273 Identities=27% Similarity=0.508 Sum_probs=237.5
Q ss_pred CCCceEeeeeceEEEEeeCCcccEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccHH
Q 037807 3 LAGQAHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGI 82 (299)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~ 82 (299)
+++.+++++++++|++++|+||+|+|++++.+|++|++||.+|+++.|++.|||+|+|++++.|++|++||+||+|+|++
T Consensus 38 ~~~~~~~~~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~~~de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~ 117 (336)
T PLN02823 38 EDDLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHHPNPKTVFIMGGGEGST 117 (336)
T ss_pred CCCcceEEEeccEEEeccCCCeEEEEEECCCCceEEEECCccccccchHHHHHHHHHhHHHhhCCCCCEEEEECCCchHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCC--CCCCCC
Q 037807 83 LREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPI--RPGHDL 160 (299)
Q Consensus 83 ~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~--~~~~~l 160 (299)
+++++++++..+|++||||++++++|+++++..+..++++|++++++|+++|+++. +++||+|++|.++|. +++..|
T Consensus 118 ~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-~~~yDvIi~D~~dp~~~~~~~~L 196 (336)
T PLN02823 118 AREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-DEKFDVIIGDLADPVEGGPCYQL 196 (336)
T ss_pred HHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-CCCccEEEecCCCccccCcchhh
Confidence 99999998889999999999999999999987666678999999999999999865 689999999999886 456789
Q ss_pred CcHHHHH-HHHHhcCCCcEEEEecCCc--ccchHHHHHHHHHHhhhcCCceeeeEEeecccCCcceeEEecccCCCCCCC
Q 037807 161 FEGPFFE-LVAKALRPGGAMCIQAESL--WFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSV 237 (299)
Q Consensus 161 ~t~ef~~-~~~~~LkpgGvlv~~~~s~--~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~w~~~~ask~~~~~~~ 237 (299)
|+.+||+ .++++|+|||++++|++++ +...+.++.++++++++| +.+..|...+|+|++ .|+|++||| . +..
T Consensus 197 yt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF-~~v~~y~~~vPsf~~-~w~f~~aS~--~-~~~ 271 (336)
T PLN02823 197 YTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVF-KYVVPYTAHVPSFAD-TWGWVMASD--H-PFA 271 (336)
T ss_pred ccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhC-CCEEEEEeecCCCCC-ceEEEEEeC--C-ccc
Confidence 9999999 9999999999999998774 445778999999999999 678888899999975 599999999 3 222
Q ss_pred CCCCCCCCCCccccccCCCCCCeeeCHHHHHHHHhcccHHHHHhhccc
Q 037807 238 DFIHPINPIDPDQIFGVAKGPLKFYNSAEVHAAAFCLPTFAKKPAHSH 285 (299)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~yy~~~~~h~~~f~lp~~~~~~l~~~ 285 (299)
++ .+ ..+..+. .++...+|||||+ ++|.++|+||+++++.|...
T Consensus 272 ~~-~~-~~~~~~~-~~~~~~~lryy~~-~~h~a~F~lP~~~~~~l~~~ 315 (336)
T PLN02823 272 DL-SA-EELDSRI-KERIDGELKYLDG-ETFSSAFALNKTVRQALANE 315 (336)
T ss_pred cC-Ch-hHHHHhh-hhcccCCCeEECH-HHHHHHccCcHHHHHhhcCC
Confidence 11 11 1222221 1112246899999 99999999999999988754
No 6
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=100.00 E-value=2.4e-53 Score=385.84 Aligned_cols=265 Identities=40% Similarity=0.735 Sum_probs=236.1
Q ss_pred CCCCceEeeeeceEEEEeeCCcccEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccH
Q 037807 2 YLAGQAHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGG 81 (299)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~ 81 (299)
.+|+.+++++++++|++++|+||+|.|++++.+|++|+|||.+|+++.+|+.||||++|++++.|++|++||+||||+|+
T Consensus 6 ~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~iG~G~G~ 85 (270)
T TIGR00417 6 HDKNFGLTMKVKKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLVIGGGDGG 85 (270)
T ss_pred cCCCceEEEEeeeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEEEcCCchH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCCC
Q 037807 82 ILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDLF 161 (299)
Q Consensus 82 ~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~ 161 (299)
++++++++++..++++||+|+++++.|+++++..+..+++++++++.+|+++++++. .++||+||+|.+++.++...|+
T Consensus 86 ~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~~~yDvIi~D~~~~~~~~~~l~ 164 (270)
T TIGR00417 86 VLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-ENTFDVIIVDSTDPVGPAETLF 164 (270)
T ss_pred HHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-CCCccEEEEeCCCCCCcccchh
Confidence 999999987778999999999999999999987655567899999999999999876 6899999999999888888899
Q ss_pred cHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCCceeeeEEeecccCCcceeEEecccCCCCCCCCCCC
Q 037807 162 EGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIH 241 (299)
Q Consensus 162 t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~w~~~~ask~~~~~~~~~~~ 241 (299)
+.+||+.++++|+|||++++++++++.....+..+.++++++| +.+.++.+.+|+|++|.|+|++||| .. .+
T Consensus 165 ~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F-~~v~~~~~~vp~~~~g~~~~~~as~--~~-----~~ 236 (270)
T TIGR00417 165 TKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAF-PITEYYTANIPTYPSGLWTFTIGSK--NK-----YD 236 (270)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHC-CCeEEEEEEcCccccchhEEEEEEC--CC-----CC
Confidence 9999999999999999999999999988899999999999999 6788888999999999999999998 21 12
Q ss_pred CCCCCCccccccCCCCCCeeeCHHHHHHHHhcccHH
Q 037807 242 PINPIDPDQIFGVAKGPLKFYNSAEVHAAAFCLPTF 277 (299)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~yy~~~~~h~~~f~lp~~ 277 (299)
|......+ ..+....++||||+ ++|+++|+||+|
T Consensus 237 ~~~~~~~~-~~~~~~~~~~~y~~-~~h~~~f~lp~~ 270 (270)
T TIGR00417 237 PLEVEDRR-ISEFEDGKTKYYNP-DIHKAAFVLPKW 270 (270)
T ss_pred CCCcchhh-hhhcccCCCeEECH-HHHHHhcCCCCC
Confidence 32211111 11112345899999 999999999986
No 7
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-55 Score=387.68 Aligned_cols=280 Identities=49% Similarity=0.834 Sum_probs=262.7
Q ss_pred CCCCceEeeeeceEEEEeeCCcccEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccH
Q 037807 2 YLAGQAHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGG 81 (299)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~ 81 (299)
+|||.+++++|+++|+.++|.||++.|+++..+|+.|++||..|.+++||+.|+||++|+|++.|++|++||+||+|+|+
T Consensus 55 i~pg~a~tLkVe~vl~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~l~s~~npkkvlVVgggDgg 134 (337)
T KOG1562|consen 55 IWPGQALTLKVEKVLHDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGG 134 (337)
T ss_pred CCCCceeEEEeeeecccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccccccCCCCCeEEEEecCCcc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCCC
Q 037807 82 ILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDLF 161 (299)
Q Consensus 82 ~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~ 161 (299)
..|+..+|+.+++++.+|+|..+++..++|++.+..++++++|.++.+||..|++..+.++||+||.|+.+|.+|+..+|
T Consensus 135 vlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf 214 (337)
T KOG1562|consen 135 VLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALF 214 (337)
T ss_pred ceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHH
Confidence 99999999999999999999999999999999998889999999999999999998777899999999999999999999
Q ss_pred cHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCCceeeeEEeecccCCcceeEEecccCCCCCCCCCCC
Q 037807 162 EGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIH 241 (299)
Q Consensus 162 t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~w~~~~ask~~~~~~~~~~~ 241 (299)
.+.+|+.+.+.||+||++++|.+|.|.+.+.+++..+..+.+| +.+.+.++.+|+||+|..||.+||| ..|+.++..
T Consensus 215 ~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f-~~t~ya~ttvPTypsg~igf~l~s~--~~~~~~~~~ 291 (337)
T KOG1562|consen 215 QKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIF-DLTAYAITTVPTYPSGRIGFMLCSK--LKPDGKYKT 291 (337)
T ss_pred HHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhc-CccceeeecCCCCccceEEEEEecc--cCCCCCccC
Confidence 9999999999999999999999999999999999999999999 5788888999999999999999997 578888888
Q ss_pred CCCCCCccccccCCCCCCeeeCHHHHHHHHhcccHHHHHhhccc
Q 037807 242 PINPIDPDQIFGVAKGPLKFYNSAEVHAAAFCLPTFAKKPAHSH 285 (299)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~yy~~~~~h~~~f~lp~~~~~~l~~~ 285 (299)
|.+.+..+.........|+|||. ++|+|+|+||.|+++.+...
T Consensus 292 p~n~i~~~e~~~l~~~~L~yyn~-e~h~aaf~lPsf~~k~~~~~ 334 (337)
T KOG1562|consen 292 PGNPITCKEQLSLYEEQLLYYNV-EFHSAAFVLPSFAEKWLFYQ 334 (337)
T ss_pred CCCccCHHHHHhhhhhhhccCCc-hhceeeeechHHHHHHHHHH
Confidence 98877765432122346899999 99999999999999988653
No 8
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=100.00 E-value=7e-52 Score=370.77 Aligned_cols=227 Identities=37% Similarity=0.705 Sum_probs=213.8
Q ss_pred CCCCceEeeeeceEEEEeeCCcccEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccH
Q 037807 2 YLAGQAHFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGG 81 (299)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~ 81 (299)
++|+.+++|+++++|++++|+||+|.|++++.+|++++|||.+|+++++++.|||||+|+|++.|++|++||+||+|+|+
T Consensus 10 ~~~~~~~~~~v~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~ 89 (246)
T PF01564_consen 10 FDPGLGVSYRVEEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRVLIIGGGDGG 89 (246)
T ss_dssp TSTTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EEEEEESTTSH
T ss_pred CCCCceEEEEEEEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCceEEEcCCChh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCC-CccEEEEcCCCCCCCCCCC
Q 037807 82 ILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSG-TFDAIIIDAFDPIRPGHDL 160 (299)
Q Consensus 82 ~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~-~fDvIi~D~~~~~~~~~~l 160 (299)
+++++++++++++|++|||||.|++.|+++|+.....++++|++++++||+.|+++. .+ +||+||+|+++|.+++..|
T Consensus 90 ~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~l 168 (246)
T PF01564_consen 90 TARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-QEEKYDVIIVDLTDPDGPAPNL 168 (246)
T ss_dssp HHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-SST-EEEEEEESSSTTSCGGGG
T ss_pred hhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-cCCcccEEEEeCCCCCCCcccc
Confidence 999999999889999999999999999999998766678999999999999999987 55 9999999999999888779
Q ss_pred CcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCCceeeeEEeecccCCcceeEEeccc
Q 037807 161 FEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCST 230 (299)
Q Consensus 161 ~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~w~~~~ask 230 (299)
|+.+||+.++++|+|||++++|+++++.....++.+.++++++| +.+.++...+|+|+++.|+|++|||
T Consensus 169 ~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F-~~v~~~~~~vP~~~~~~~~~~~~s~ 237 (246)
T PF01564_consen 169 FTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVF-PQVKPYTAYVPSYGSGWWSFASASK 237 (246)
T ss_dssp SSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTS-SEEEEEEEECTTSCSSEEEEEEEES
T ss_pred cCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhC-CceEEEEEEcCeecccceeEEEEeC
Confidence 99999999999999999999999999999999999999999999 5888999999999999999999999
No 9
>PRK03612 spermidine synthase; Provisional
Probab=100.00 E-value=2.7e-46 Score=367.17 Aligned_cols=254 Identities=26% Similarity=0.513 Sum_probs=221.9
Q ss_pred eEeeeeceEEEEeeCCcccEEEEEecC-Cc--eEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccHHH
Q 037807 7 AHFLEVEKIIFQGKSEYQNMMVFQSSS-YG--KVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGIL 83 (299)
Q Consensus 7 ~~~~~~~~~l~~~~s~~q~i~v~e~~~-~g--~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~ 83 (299)
.+.+..++++++++|+||+|.|++++. +| +.|++||.+|+++.|++.|||+++|+++..|+++++||+||||+|.++
T Consensus 233 ~~~~~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rVL~IG~G~G~~~ 312 (521)
T PRK03612 233 EQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVLVLGGGDGLAL 312 (521)
T ss_pred HhHhccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHH
Confidence 345678899999999999999999876 36 899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccEEEEEECCHHHHHHHHh--hchhhh-cCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCC-CC
Q 037807 84 REISRHASVEQIHICEIDTMLINVYKE--YFPEIA-IGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPG-HD 159 (299)
Q Consensus 84 ~~l~~~~~~~~v~~VEid~~vi~~a~~--~~~~~~-~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~-~~ 159 (299)
+++++++++++|++||+|++|++.+|+ +++..+ ..+++||++++++|+++++++. +++||+|++|.++|..+. ..
T Consensus 313 ~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~~~fDvIi~D~~~~~~~~~~~ 391 (521)
T PRK03612 313 REVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-AEKFDVIIVDLPDPSNPALGK 391 (521)
T ss_pred HHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-CCCCCEEEEeCCCCCCcchhc
Confidence 999999777899999999999999999 455443 3467899999999999999876 679999999999987664 67
Q ss_pred CCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhh-cCCceeeeEEeecccCCcceeEEecccCCCCCCCC
Q 037807 160 LFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRI-FKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVD 238 (299)
Q Consensus 160 l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~-F~~~v~~~~~~vP~~~~g~w~~~~ask~~~~~~~~ 238 (299)
+++.|||+.++++|+|||++++|+++++...+.++++.++++++ | .+.+|..++|+| |+|+|++||| ..
T Consensus 392 L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf--~v~~~~~~vps~--g~w~f~~as~--~~---- 461 (521)
T PRK03612 392 LYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL--ATTPYHVNVPSF--GEWGFVLAGA--GA---- 461 (521)
T ss_pred cchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC--EEEEEEeCCCCc--chhHHHeeeC--CC----
Confidence 99999999999999999999999999999999999999999999 7 477788999999 7999999999 31
Q ss_pred CCCCCCCCCccccccCCCCCCeeeCHHHHHHHHhcccHHHH
Q 037807 239 FIHPINPIDPDQIFGVAKGPLKFYNSAEVHAAAFCLPTFAK 279 (299)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~yy~~~~~h~~~f~lp~~~~ 279 (299)
+|.. ...+ ....++||||+ ++|+++|+||++++
T Consensus 462 --~~~~-~~~~----~~~~~~~~y~~-~~h~~~f~lp~~~~ 494 (521)
T PRK03612 462 --RPPL-AVPT----ELPVPLRFLDP-ALLAAAFVFPKDMR 494 (521)
T ss_pred --Cccc-ccch----hcccCCcccCH-HHHHHHhCCChhhh
Confidence 1211 1111 12357999999 99999999999998
No 10
>PRK01581 speE spermidine synthase; Validated
Probab=100.00 E-value=3.3e-46 Score=345.25 Aligned_cols=215 Identities=29% Similarity=0.455 Sum_probs=196.5
Q ss_pred eeceEEEEeeCCcccEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcC
Q 037807 11 EVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHA 90 (299)
Q Consensus 11 ~~~~~l~~~~s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~ 90 (299)
++.++||+++|+||+|.|+++..+ .|+|||.+|++++||++|||+|+|+++..|++|++||+||||+|.+++++++++
T Consensus 95 ~~~~vl~~~~S~yQ~I~I~et~~~--~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~ 172 (374)
T PRK01581 95 GEHTNLFAEKSNYQNINLLQVSDI--RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYE 172 (374)
T ss_pred cccCEEEecCCCCceEEEEEcCCE--EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcC
Confidence 467999999999999999999866 699999999999999999999999999999999999999999999999999998
Q ss_pred CccEEEEEECCHHHHHHHHhh--chhhh-cCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCC-CCCCCcHHHH
Q 037807 91 SVEQIHICEIDTMLINVYKEY--FPEIA-IGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRP-GHDLFEGPFF 166 (299)
Q Consensus 91 ~~~~v~~VEid~~vi~~a~~~--~~~~~-~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~-~~~l~t~ef~ 166 (299)
++.+|++||||++|+++|+++ ++.++ ..++++|++++++|+++|++.. .++||+||+|.++|... ...||+.+||
T Consensus 173 ~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-~~~YDVIIvDl~DP~~~~~~~LyT~EFy 251 (374)
T PRK01581 173 TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-SSLYDVIIIDFPDPATELLSTLYTSELF 251 (374)
T ss_pred CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-CCCccEEEEcCCCccccchhhhhHHHHH
Confidence 889999999999999999984 33332 3567899999999999999875 67899999999998754 5789999999
Q ss_pred HHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCCceeeeEEeecccCCcceeEEeccc
Q 037807 167 ELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCST 230 (299)
Q Consensus 167 ~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~w~~~~ask 230 (299)
+.++++|+|||++++|+++++..+..++.+.++++++| ..+..|.+.+|+|+ +.|||++||+
T Consensus 252 ~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af-~~v~~y~t~vPsyg-~~WgF~~as~ 313 (374)
T PRK01581 252 ARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAG-LTVKSYHTIVPSFG-TDWGFHIAAN 313 (374)
T ss_pred HHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhC-CceEEEEEecCCCC-CceEEEEEeC
Confidence 99999999999999999999888888899999999999 57788889999996 4599999998
No 11
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=100.00 E-value=1.7e-45 Score=333.35 Aligned_cols=246 Identities=30% Similarity=0.469 Sum_probs=217.3
Q ss_pred eceEEEEeeCCcccEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCC
Q 037807 12 VEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHAS 91 (299)
Q Consensus 12 ~~~~l~~~~s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~ 91 (299)
.+++|+..+|+||+|.|.+... ...|++||..|++++||++|||.++++++...+..++||++|||+|-.+||++|+|.
T Consensus 234 gdeIIh~~qspYQ~iVvTr~g~-d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~ 312 (508)
T COG4262 234 GDEIIHAIQSPYQRIVVTRRGD-DLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQ 312 (508)
T ss_pred cCceeeeccCccceEEEEEecC-ceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCC
Confidence 3899999999999998888764 578999999999999999999999999998888899999999999999999999998
Q ss_pred ccEEEEEECCHHHHHHHHhh--chhh-hcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCC-CCCCcHHHHH
Q 037807 92 VEQIHICEIDTMLINVYKEY--FPEI-AIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPG-HDLFEGPFFE 167 (299)
Q Consensus 92 ~~~v~~VEid~~vi~~a~~~--~~~~-~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~-~~l~t~ef~~ 167 (299)
+++|+.||+||+|++.+++. +... ++.++|||++++..|+.+|++.. .+.||+||+|.+||..+. .++|+.|||.
T Consensus 313 ~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a-~~~fD~vIVDl~DP~tps~~rlYS~eFY~ 391 (508)
T COG4262 313 VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA-ADMFDVVIVDLPDPSTPSIGRLYSVEFYR 391 (508)
T ss_pred cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-cccccEEEEeCCCCCCcchhhhhhHHHHH
Confidence 99999999999999999954 3333 45789999999999999999986 789999999999999886 7899999999
Q ss_pred HHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCCceeeeEEeecccCCcceeEEecccCCCCCCCCCCCCCCCCC
Q 037807 168 LVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCSTESEGPSVDFIHPINPID 247 (299)
Q Consensus 168 ~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~w~~~~ask~~~~~~~~~~~~~~~~~ 247 (299)
.++++|+++|++++|++|++..++.++++.+++++.- ..+-+|.++||+| |.|||++|++ . +.++..|.
T Consensus 392 ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG-~~~~Pyhv~VPTF--GeWGf~l~~~--~--~~~fep~~---- 460 (508)
T COG4262 392 LLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAG-YRVWPYHVHVPTF--GEWGFILAAP--G--DADFEPPT---- 460 (508)
T ss_pred HHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCc-ceeeeeEEecCcc--cccceeeccc--c--cCCCCCCc----
Confidence 9999999999999999999999999999999999874 3456778999999 8999999998 3 12332111
Q ss_pred ccccccCCCCCCeeeCHHHHHHHHhcccHH
Q 037807 248 PDQIFGVAKGPLKFYNSAEVHAAAFCLPTF 277 (299)
Q Consensus 248 ~~~~~~~~~~~~~yy~~~~~h~~~f~lp~~ 277 (299)
....++||.|. ++..|+|++-+.
T Consensus 461 ------e~~~~t~FLd~-e~~~a~~~fg~d 483 (508)
T COG4262 461 ------EYRPPTRFLDA-EVLHAAFVFGPD 483 (508)
T ss_pred ------ccCcccchhhH-HHHHHHHhcCCC
Confidence 12357999999 999999988755
No 12
>PRK04457 spermidine synthase; Provisional
Probab=99.94 E-value=1.3e-25 Score=203.09 Aligned_cols=199 Identities=22% Similarity=0.321 Sum_probs=156.9
Q ss_pred EeeCCcccEEEEEecCCceEEEEcC-eeeccC------cchhhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcC
Q 037807 18 QGKSEYQNMMVFQSSSYGKVFVLDG-ALQLTE------KDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHA 90 (299)
Q Consensus 18 ~~~s~~q~i~v~e~~~~g~~l~ldg-~~q~~~------~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~ 90 (299)
-.++.|+.|.|+|... .|.|.+|+ ..|+.. ...+.|+++|.. .+..++++++||+||+|+|.+++.++++.
T Consensus 11 ~~~~~~~~i~v~e~~~-~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~-~l~~~~~~~~vL~IG~G~G~l~~~l~~~~ 88 (262)
T PRK04457 11 PAKAGFPEVGVSEEGG-VRSLHLGSDTVQSSMRIDDPSELELAYTRAMMG-FLLFNPRPQHILQIGLGGGSLAKFIYTYL 88 (262)
T ss_pred cccccCCCcEEEecCC-EEEEEECCCcceeeeecCCcccccCHHHHHHHH-HHhcCCCCCEEEEECCCHhHHHHHHHHhC
Confidence 3577899999999874 58888987 477642 234689997643 22335678999999999999999998876
Q ss_pred CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHH
Q 037807 91 SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVA 170 (299)
Q Consensus 91 ~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~ 170 (299)
+..+|++||+||++++.|+++|.... .+++++++++|+.+++.+. .++||+|++|.++..+.+..+.+.+||+.++
T Consensus 89 p~~~v~~VEidp~vi~~A~~~f~~~~---~~~rv~v~~~Da~~~l~~~-~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~ 164 (262)
T PRK04457 89 PDTRQTAVEINPQVIAVARNHFELPE---NGERFEVIEADGAEYIAVH-RHSTDVILVDGFDGEGIIDALCTQPFFDDCR 164 (262)
T ss_pred CCCeEEEEECCHHHHHHHHHHcCCCC---CCCceEEEECCHHHHHHhC-CCCCCEEEEeCCCCCCCccccCcHHHHHHHH
Confidence 67889999999999999999986431 2589999999999999865 5789999999987766677888999999999
Q ss_pred HhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCCceeeeEEeecccCCcceeEEeccc
Q 037807 171 KALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCST 230 (299)
Q Consensus 171 ~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~w~~~~ask 230 (299)
++|+|||++++|. +.....+..++++++++|+..+ + .+|...+|+ ..++|+|
T Consensus 165 ~~L~pgGvlvin~---~~~~~~~~~~l~~l~~~F~~~~--~--~~~~~~~~N-~v~~a~~ 216 (262)
T PRK04457 165 NALSSDGIFVVNL---WSRDKRYDRYLERLESSFEGRV--L--ELPAESHGN-VAVFAFK 216 (262)
T ss_pred HhcCCCcEEEEEc---CCCchhHHHHHHHHHHhcCCcE--E--EEecCCCcc-EEEEEEC
Confidence 9999999999975 3344457788999999995332 2 235444455 4677877
No 13
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.72 E-value=2.2e-16 Score=136.69 Aligned_cols=164 Identities=16% Similarity=0.165 Sum_probs=136.8
Q ss_pred eEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhh
Q 037807 36 KVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEI 115 (299)
Q Consensus 36 ~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~ 115 (299)
..+.|||.-|-.+..+..+...+.-+.+...++..+|||.+.|-|.++.+.++.. ...|..||.||.|+++|+-+- +
T Consensus 102 PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNP--w 178 (287)
T COG2521 102 PTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNP--W 178 (287)
T ss_pred CeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCC--C
Confidence 5788999998877777888888888877766678999999999999999999984 568999999999999998652 2
Q ss_pred hcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcc---cchHH
Q 037807 116 AIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLW---FQQFS 192 (299)
Q Consensus 116 ~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~---~~~~~ 192 (299)
+..+.+.+++++.+|+.+++++..+++||+||.|++-- +.+..||+.+||++++|+|+|||.+.=..++|- ...+.
T Consensus 179 Sr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRf-S~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~ 257 (287)
T COG2521 179 SRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRF-SLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDL 257 (287)
T ss_pred CccccccccEEecccHHHHHhcCCccccceEeeCCCcc-chhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCCh
Confidence 22334568999999999999998788899999998764 344589999999999999999999987666554 34567
Q ss_pred HHHHHHHHhhh
Q 037807 193 VQHLIDDCHRI 203 (299)
Q Consensus 193 ~~~~~~~l~~~ 203 (299)
.+.+.+.|+++
T Consensus 258 ~~gVa~RLr~v 268 (287)
T COG2521 258 PKGVAERLRRV 268 (287)
T ss_pred hHHHHHHHHhc
Confidence 78888888876
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.62 E-value=9.4e-16 Score=120.14 Aligned_cols=109 Identities=19% Similarity=0.253 Sum_probs=83.7
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEE
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIII 148 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~ 148 (299)
..+|||||||+|..+.++++..+..+|++||+||++++.|++++.... ..++++++.+|+ .+.... .++||+|++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~-~~~~~~-~~~~D~v~~ 76 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG---LSDRITFVQGDA-EFDPDF-LEPFDLVIC 76 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT---TTTTEEEEESCC-HGGTTT-SSCEEEEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECcc-ccCccc-CCCCCEEEE
Confidence 578999999999999999994345789999999999999999984321 358999999999 444433 578999999
Q ss_pred cC-CCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 149 DA-FDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 149 D~-~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
.. ......+. -...++++.+++.|+|||+++++.
T Consensus 77 ~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPL-DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 87 22111100 012568999999999999999864
No 15
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.55 E-value=3.7e-14 Score=111.99 Aligned_cols=109 Identities=25% Similarity=0.404 Sum_probs=87.4
Q ss_pred CeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEc
Q 037807 70 KKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIID 149 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D 149 (299)
.+|||+|||+|.++..+++.. ..+++++|+||..+++++++++.... ..+++++.+|+.+..+....++||+|++|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGL---DDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTT---TTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccC---CceEEEEECchhhchhhccCceeEEEEEC
Confidence 489999999999999999886 68999999999999999999887521 46799999999998855557899999999
Q ss_pred CCCCCCC----CCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 150 AFDPIRP----GHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 150 ~~~~~~~----~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
++..... ...-....|++.+.+.|+|||++++-
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 8765321 11123478999999999999999874
No 16
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.53 E-value=6e-13 Score=118.16 Aligned_cols=130 Identities=19% Similarity=0.253 Sum_probs=104.1
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+...+|||||+|+|.++..++++.+..+|++||+++++.+.|+++...+. + ..|++++++|..+|.+.....+||+|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~--l-~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP--L-EERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc--c-hhceeEehhhHHHhhhcccccccCEE
Confidence 34789999999999999999987444789999999999999999987642 2 57999999999999887645679999
Q ss_pred EEcCCCCCCCC--------------CCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhh-hc
Q 037807 147 IIDAFDPIRPG--------------HDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHR-IF 204 (299)
Q Consensus 147 i~D~~~~~~~~--------------~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~-~F 204 (299)
|++++.-.... ..+--+++++.+++.|||||.+.+ ..+++.+.+++..+++ -|
T Consensus 120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~-----V~r~erl~ei~~~l~~~~~ 187 (248)
T COG4123 120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF-----VHRPERLAEIIELLKSYNL 187 (248)
T ss_pred EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE-----EecHHHHHHHHHHHHhcCC
Confidence 99986532110 011237889999999999999985 4567788889999987 45
No 17
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.52 E-value=5e-13 Score=116.42 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=95.3
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHH-hcCCCCccEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLK-TVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~-~~~~~~fDvI 146 (299)
+..+|||||||+|..+..+++..+..+|++||+++.+++.+++++... .-++++++.+|+.+.+. ..+++.||+|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~----~~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE----GLTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc----CCCCEEEEecCHHHHHHHHcCccccceE
Confidence 567899999999999999987655568999999999999999987643 23579999999943333 2335789999
Q ss_pred EEcCCCCCCCC----CCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhh
Q 037807 147 IIDAFDPIRPG----HDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHR 202 (299)
Q Consensus 147 i~D~~~~~~~~----~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~ 202 (299)
++..++|+... .......+++.+.+.|+|||++++.+. ....+..+.+.+++
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~----~~~~~~~~~~~~~~ 171 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD----WEGYAEYMLEVLSA 171 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC----CHHHHHHHHHHHHh
Confidence 99876664321 112347899999999999999998542 33445556666654
No 18
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.51 E-value=5.2e-13 Score=115.55 Aligned_cols=127 Identities=16% Similarity=0.262 Sum_probs=98.3
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCccEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~fDvI 146 (299)
+..+|||||||+|..+..+++..+..++++||+++.+++.|++..... .-++++++.+|+.+++... +++.+|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~----~l~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL----GLKNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh----CCCCEEEEccCHHHHHHhhCCCCceeEE
Confidence 456899999999999999998655678999999999999999887643 2248999999998876543 24589999
Q ss_pred EEcCCCCCCCC----CCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhh
Q 037807 147 IIDAFDPIRPG----HDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHR 202 (299)
Q Consensus 147 i~D~~~~~~~~----~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~ 202 (299)
+++.++|+... ..+...++++.+.+.|+|||.|.+.+.+ ...+..+.+.+.+
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~----~~~~~~~~~~~~~ 147 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN----EPLFEDMLKVLSE 147 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC----HHHHHHHHHHHHh
Confidence 99988886332 2355688999999999999999986533 2334445555544
No 19
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.49 E-value=5.3e-14 Score=119.26 Aligned_cols=107 Identities=21% Similarity=0.240 Sum_probs=84.5
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
...+|||||||+|.++..++++.+..+|+++|+++.+++.+++++..++ -..++++..|..+.+. +++||+|+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~----~~~v~~~~~d~~~~~~---~~~fD~Iv 103 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG----LENVEVVQSDLFEALP---DGKFDLIV 103 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT----CTTEEEEESSTTTTCC---TTCEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC----cccccccccccccccc---ccceeEEE
Confidence 6779999999999999999987666679999999999999999988752 1229999999877654 58999999
Q ss_pred EcCCCCCCCC-CCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 148 IDAFDPIRPG-HDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 148 ~D~~~~~~~~-~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
+++|-..+.. ......+|++.+.++|+|||.+++
T Consensus 104 ~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 104 SNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp E---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 9987544432 112347899999999999998865
No 20
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.49 E-value=6.1e-13 Score=121.82 Aligned_cols=156 Identities=13% Similarity=0.101 Sum_probs=107.4
Q ss_pred CCcccEEEEEecCCceEEEEcCeeeccCcch-hhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEE
Q 037807 21 SEYQNMMVFQSSSYGKVFVLDGALQLTEKDE-CAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICE 99 (299)
Q Consensus 21 s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de-~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VE 99 (299)
-|.|+| +.+...+|..+.++..+-+..++. ....+.+.. .....++.+|||+|||+|.++..++++.+..+|+++|
T Consensus 76 ~Pl~yi-~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~--~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avD 152 (284)
T TIGR03533 76 IPVAYL-TNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAP--WLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVD 152 (284)
T ss_pred CcHHHH-cCCCeecCcEEEECCCCccCCCchHHHHHHHHHH--HhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEE
Confidence 377777 555556677788886555544432 111122221 1112345799999999999999999865556899999
Q ss_pred CCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCC-------------CCCC------
Q 037807 100 IDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRP-------------GHDL------ 160 (299)
Q Consensus 100 id~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~-------------~~~l------ 160 (299)
+|+.+++.|++++...+ . ..+++++.+|+.+.+. +++||+|++|++..... ...|
T Consensus 153 is~~al~~A~~n~~~~~--~-~~~i~~~~~D~~~~~~---~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dG 226 (284)
T TIGR03533 153 ISPDALAVAEINIERHG--L-EDRVTLIQSDLFAALP---GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDG 226 (284)
T ss_pred CCHHHHHHHHHHHHHcC--C-CCcEEEEECchhhccC---CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcH
Confidence 99999999999987542 1 2579999999876552 45799999997642110 0011
Q ss_pred --CcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 161 --FEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 161 --~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
+...+++.+.+.|+|||.+++..+.
T Consensus 227 l~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 227 LDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 1256788889999999999987653
No 21
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.47 E-value=2e-12 Score=122.83 Aligned_cols=153 Identities=14% Similarity=0.203 Sum_probs=106.4
Q ss_pred eCCcccEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEE
Q 037807 20 KSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICE 99 (299)
Q Consensus 20 ~s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VE 99 (299)
.-|.|+| +-+.+++|..+.++-.+....++. |.++...+...++..+|||||||+|.++..+++..+..+|+++|
T Consensus 208 gePlqYI-lG~~~F~G~~f~V~p~vLIPRpeT----E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVD 282 (423)
T PRK14966 208 GEPVAYI-LGVREFYGRRFAVNPNVLIPRPET----EHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASD 282 (423)
T ss_pred CCCceeE-eeeeeecCcEEEeCCCccCCCccH----HHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEE
Confidence 3588888 677778888888886665555553 33322222222345689999999999999998754567899999
Q ss_pred CCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCC-------------CCCCCC-----
Q 037807 100 IDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIR-------------PGHDLF----- 161 (299)
Q Consensus 100 id~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~-------------~~~~l~----- 161 (299)
+|+.+++.|+++.... ..+++++.+|..+..... .++||+|++|++.-.. |...|+
T Consensus 283 iS~~ALe~AreNa~~~-----g~rV~fi~gDl~e~~l~~-~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dG 356 (423)
T PRK14966 283 ISPPALETARKNAADL-----GARVEFAHGSWFDTDMPS-EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDG 356 (423)
T ss_pred CCHHHHHHHHHHHHHc-----CCcEEEEEcchhcccccc-CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCch
Confidence 9999999999998654 247999999986542111 3579999999864211 101121
Q ss_pred ---cHHHHHHHHHhcCCCcEEEEec
Q 037807 162 ---EGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 162 ---t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
-..+++.+.+.|+|||.+++..
T Consensus 357 L~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 357 LSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 1345556678999999988755
No 22
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.46 E-value=1.1e-12 Score=112.35 Aligned_cols=102 Identities=20% Similarity=0.212 Sum_probs=82.6
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+..+|||||||+|.++..+++..+..+|++||+|+.+++.++++.... .-++++++.+|+.++. . .++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~----~~~~i~~i~~d~~~~~--~-~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL----GLNNVEIVNGRAEDFQ--H-EEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh----CCCCeEEEecchhhcc--c-cCCccEEE
Confidence 478999999999999999887555578999999999999999887654 2246999999998852 2 57899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecC
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
++.... -.++++.+.+.|+|||++++..+
T Consensus 115 s~~~~~--------~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 115 SRALAS--------LNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ehhhhC--------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 875211 26788999999999999998643
No 23
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.45 E-value=1.5e-12 Score=124.17 Aligned_cols=129 Identities=19% Similarity=0.169 Sum_probs=97.5
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc--CCCCccE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV--QSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~~fDv 145 (299)
+.++|||+|||+|+++..++.. +..+|++||+|+.+++.|++++..++ ++..+++++.+|+++++++. ..++||+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ng--l~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 5689999999999998877654 45789999999999999999988752 22348999999999998653 2468999
Q ss_pred EEEcCCCCCCCCCCCC-----cHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHH
Q 037807 146 IIIDAFDPIRPGHDLF-----EGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDD 199 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~-----t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~ 199 (299)
||+|++.-......+. -.++++.+.+.|+|||++++.+.|.....+.+.+++..
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~ 355 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIAD 355 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHH
Confidence 9999876322211121 13456677899999999998777777776666555543
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.45 E-value=6.6e-13 Score=110.18 Aligned_cols=107 Identities=22% Similarity=0.299 Sum_probs=83.9
Q ss_pred CCCeEEEEeccccHHHHHHH-hcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGDGGILREIS-RHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+..+|||+|||+|.++..++ +..+..++++||+++++++.|++.+... .-++++++++|..+ +...-.++||+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~----~~~ni~~~~~d~~~-l~~~~~~~~D~I 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL----GLDNIEFIQGDIED-LPQELEEKFDII 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT----TSTTEEEEESBTTC-GCGCSSTTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc----cccccceEEeehhc-cccccCCCeeEE
Confidence 56899999999999999999 5555678999999999999999987654 23489999999988 543102789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
++......... ...+++.+.+.|+++|++++..
T Consensus 78 ~~~~~l~~~~~----~~~~l~~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 78 ISNGVLHHFPD----PEKVLKNIIRLLKPGGILIISD 110 (152)
T ss_dssp EEESTGGGTSH----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcCchhhccC----HHHHHHHHHHHcCCCcEEEEEE
Confidence 99754321111 1578999999999999999854
No 25
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.45 E-value=1.1e-12 Score=104.08 Aligned_cols=104 Identities=20% Similarity=0.266 Sum_probs=83.4
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+..+|||||||+|..+..+++..+..+|+++|+++.+++.+++++... ..++++++.+|+...+... .++||+|+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~D~v~ 93 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF----GVSNIVIVEGDAPEALEDS-LPEPDRVF 93 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh----CCCceEEEeccccccChhh-cCCCCEEE
Confidence 456999999999999999998654578999999999999999987654 2357899999977544433 46899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
++.... ...++++.+.+.|+|||.++++.
T Consensus 94 ~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 94 IGGSGG-------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ECCcch-------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 865321 12689999999999999999854
No 26
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.43 E-value=1.3e-12 Score=112.50 Aligned_cols=104 Identities=19% Similarity=0.236 Sum_probs=84.6
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+++.+|||||||+|..+..+++..+..+|++||+++.+++.|+++....+ -++++++.+|+.++.. .++||+|
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~----l~~i~~~~~d~~~~~~---~~~fDlV 116 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG----LKNVTVVHGRAEEFGQ---EEKFDVV 116 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC----CCCEEEEeccHhhCCC---CCCccEE
Confidence 44789999999999999999875456799999999999999999877652 2349999999987532 4689999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
+++.... -.++++.+++.|+|||.+++..+.
T Consensus 117 ~~~~~~~--------~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 117 TSRAVAS--------LSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred EEccccC--------HHHHHHHHHHhcCCCeEEEEEeCC
Confidence 9975321 278999999999999999986533
No 27
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=3.2e-12 Score=113.37 Aligned_cols=106 Identities=18% Similarity=0.231 Sum_probs=85.8
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
++.+|||||||||-.+..+++..+..+|+++|+++.|++.+++..... ....++++.+|+.+.. .++++||+|.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~----~~~~i~fv~~dAe~LP--f~D~sFD~vt 124 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK----GVQNVEFVVGDAENLP--FPDNSFDAVT 124 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc----CccceEEEEechhhCC--CCCCccCEEE
Confidence 688999999999999999999766789999999999999999988753 1123999999998754 3489999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+...-..-+. -...+++++|+|||||++++..
T Consensus 125 ~~fglrnv~d----~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 125 ISFGLRNVTD----IDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred eeehhhcCCC----HHHHHHHHHHhhcCCeEEEEEE
Confidence 8543221111 1788999999999999888754
No 28
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.43 E-value=3.8e-12 Score=112.61 Aligned_cols=107 Identities=12% Similarity=0.096 Sum_probs=83.4
Q ss_pred CCCCeEEEEeccccHHHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGDGGILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
++..+|||||||+|..+..++++ ++..+|+++|+++.+++.+++.+... ..++++++.+|+.++.. ++++||+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~--~~~~fD~ 117 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA----GLHNVELVHGNAMELPF--DDNSFDY 117 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc----CCCceEEEEechhcCCC--CCCCccE
Confidence 35679999999999999999875 34568999999999999999987643 23579999999876432 2578999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|++...-...+. ..++++.+.+.|+|||.+++..
T Consensus 118 V~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 118 VTIGFGLRNVPD----YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred EEEecccccCCC----HHHHHHHHHHHcCcCeEEEEEE
Confidence 998643322211 2678999999999999998754
No 29
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.42 E-value=2.5e-12 Score=121.63 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=103.0
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcC--CCCccE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQ--SGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~--~~~fDv 145 (299)
+.++||++-|-||+++..++.- +..+||.||+|...+++|++++..+ +++..+++++++|+++|+++.. +.+||+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LN--g~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELN--GLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhc--CCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 3789999999999999998876 5679999999999999999999876 3456789999999999998762 359999
Q ss_pred EEEcCCCCCCCCCCCCc-----HHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHH
Q 037807 146 IIIDAFDPIRPGHDLFE-----GPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLID 198 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t-----~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~ 198 (299)
||+|+|.-......++. .+....+.++|+|||++++.+.+.....+.+..++.
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~ 351 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIA 351 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHH
Confidence 99999875433333332 455677789999999999988777667766555544
No 30
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.41 E-value=1.7e-12 Score=113.14 Aligned_cols=106 Identities=29% Similarity=0.360 Sum_probs=87.6
Q ss_pred CCCCeEEEEeccccHHHHHHHh-cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcC----CC
Q 037807 67 PNPKKVLLIGGGDGGILREISR-HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQ----SG 141 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~----~~ 141 (299)
.++++||+||++.|..+.++++ .++..+|+.+|+|++..+.|++++...+ + ..+++++.+|+.+++.+.. .+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~-~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--L-DDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--G-GGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--C-CCcEEEEEeccHhhHHHHHhccCCC
Confidence 3789999999999999999997 4556799999999999999999988652 2 3699999999999887541 24
Q ss_pred CccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 142 TFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 142 ~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+||+|++|..... ..++|+.+.+.|++||++++.
T Consensus 121 ~fD~VFiDa~K~~-------y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 121 QFDFVFIDADKRN-------YLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp SEEEEEEESTGGG-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred ceeEEEEcccccc-------hhhHHHHHhhhccCCeEEEEc
Confidence 7999999985432 277899999999999999985
No 31
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.41 E-value=1.7e-12 Score=127.62 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=110.7
Q ss_pred eCCcccEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHhhcccC--------------------------CCCCCeEE
Q 037807 20 KSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCS--------------------------IPNPKKVL 73 (299)
Q Consensus 20 ~s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~--------------------------~~~~~~VL 73 (299)
.-|.|+| +-+..++|..+.+|-.+.+..++ +|.|+..++.. ..++.+||
T Consensus 69 ~ePlqYI-~G~~~F~g~~f~V~~~VLIPRpe----TE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VL 143 (506)
T PRK01544 69 HEPIAYI-TGVKEFYSREFIVNKHVLIPRSD----TEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNIL 143 (506)
T ss_pred CCCHHHH-hCcCEEcCcEEEeCCCcccCCCc----HHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEE
Confidence 4577888 77778899999999988888777 34333322211 11346899
Q ss_pred EEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCC
Q 037807 74 LIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDP 153 (299)
Q Consensus 74 ~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~ 153 (299)
|||||+|.++..+++..+..+|+++|+|+.+++.|++++...+ + ..+++++.+|+.+.+. .++||+|+++++.-
T Consensus 144 DlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~--l-~~~v~~~~~D~~~~~~---~~~fDlIvsNPPYi 217 (506)
T PRK01544 144 ELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE--V-TDRIQIIHSNWFENIE---KQKFDFIVSNPPYI 217 (506)
T ss_pred EccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC--C-ccceeeeecchhhhCc---CCCccEEEECCCCC
Confidence 9999999999998875445789999999999999999876542 1 3589999999876543 46899999987542
Q ss_pred CC--------------CCCCCC--------cHHHHHHHHHhcCCCcEEEEec
Q 037807 154 IR--------------PGHDLF--------EGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 154 ~~--------------~~~~l~--------t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
.. |...|+ ...+++.+.+.|+|||.+++..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 10 111122 1335567788999999999865
No 32
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.41 E-value=4.1e-12 Score=114.32 Aligned_cols=154 Identities=14% Similarity=0.129 Sum_probs=102.8
Q ss_pred eCCcccEEEEEecCCceEEEEcCeeeccCcch-hhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEE
Q 037807 20 KSEYQNMMVFQSSSYGKVFVLDGALQLTEKDE-CAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHIC 98 (299)
Q Consensus 20 ~s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de-~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~V 98 (299)
.-|.|+| +-..+..|..+.++..+-+...+. ..+..++..+. ..+.+.+|||+|||+|.++..+++..+..+|++|
T Consensus 40 ~~Pl~yi-~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~--~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~v 116 (251)
T TIGR03704 40 GLPLEHV-LGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALAR--PRSGTLVVVDLCCGSGAVGAALAAALDGIELHAA 116 (251)
T ss_pred CCCHHHh-cccCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhc--ccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEE
Confidence 4577777 555555676676665443433332 22222222211 1123468999999999999999875445689999
Q ss_pred ECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCC-C-----CC--------CCCC---
Q 037807 99 EIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPI-R-----PG--------HDLF--- 161 (299)
Q Consensus 99 Eid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~-~-----~~--------~~l~--- 161 (299)
|+|+.+++.|++++..+ +++++.+|..+++.....++||+|++|++.-. + ++ ..|.
T Consensus 117 Dis~~al~~A~~N~~~~-------~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~ 189 (251)
T TIGR03704 117 DIDPAAVRCARRNLADA-------GGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGA 189 (251)
T ss_pred ECCHHHHHHHHHHHHHc-------CCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCC
Confidence 99999999999998643 24789999887764321357999999986421 1 00 0111
Q ss_pred -----cHHHHHHHHHhcCCCcEEEEec
Q 037807 162 -----EGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 162 -----t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
...+++.+.+.|+|||.+++..
T Consensus 190 dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 190 DGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred cHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2467777889999999999854
No 33
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.40 E-value=4.9e-12 Score=117.03 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=107.4
Q ss_pred CCcccEEEEEecCCceEEEEcCeeeccCcchhh-HHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEE
Q 037807 21 SEYQNMMVFQSSSYGKVFVLDGALQLTEKDECA-YQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICE 99 (299)
Q Consensus 21 s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~-Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VE 99 (299)
-|.|+| +-+...+|..+.++..+.+..++... ..+.+.. ......+.+|||+|||+|.++..+++..+..+|+++|
T Consensus 88 ~Pl~yi-~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~--~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avD 164 (307)
T PRK11805 88 IPAAYL-TNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAP--WLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVD 164 (307)
T ss_pred ccHHHH-cCcceEcCcEEEECCCCcCCCCchHHHHHHHHHH--HhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEe
Confidence 477777 56666677788888665554443211 1111211 1111123789999999999999999865567899999
Q ss_pred CCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCC-------------CCCCCCC-----
Q 037807 100 IDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPI-------------RPGHDLF----- 161 (299)
Q Consensus 100 id~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~-------------~~~~~l~----- 161 (299)
+|+.+++.|++++...+ . ..+++++.+|+.+.+. .++||+|++|++.-. .|...|+
T Consensus 165 is~~al~~A~~n~~~~~--l-~~~i~~~~~D~~~~l~---~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dG 238 (307)
T PRK11805 165 ISPDALAVAEINIERHG--L-EDRVTLIESDLFAALP---GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDG 238 (307)
T ss_pred CCHHHHHHHHHHHHHhC--C-CCcEEEEECchhhhCC---CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCch
Confidence 99999999999987542 1 2579999999877653 457999999875421 0111111
Q ss_pred ---cHHHHHHHHHhcCCCcEEEEecCC
Q 037807 162 ---EGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 162 ---t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
...+++.+.+.|+|||.+++..+.
T Consensus 239 l~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 239 LDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 256788888999999999987643
No 34
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.40 E-value=2.6e-12 Score=112.71 Aligned_cols=100 Identities=21% Similarity=0.303 Sum_probs=82.1
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
...+|||+|||.|.++..+++.. .+|+++|++++.++.|+.+..+. .-.+++......+.... .++||+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~-----gv~i~y~~~~~edl~~~--~~~FDvV~ 129 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALES-----GVNIDYRQATVEDLASA--GGQFDVVT 129 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhc-----cccccchhhhHHHHHhc--CCCccEEE
Confidence 46899999999999999999885 78999999999999999987653 22355777777776553 48999999
Q ss_pred E-----cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 148 I-----DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 148 ~-----D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
+ ..++| ..|.+.|.+.+||||++++.+.+
T Consensus 130 cmEVlEHv~dp---------~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 130 CMEVLEHVPDP---------ESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred EhhHHHccCCH---------HHHHHHHHHHcCCCcEEEEeccc
Confidence 8 34555 77999999999999999997654
No 35
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.40 E-value=3.1e-12 Score=111.95 Aligned_cols=106 Identities=25% Similarity=0.358 Sum_probs=90.5
Q ss_pred CCCCeEEEEeccccHHHHHHHh-cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEE-ccHHHHHHhcCCCCcc
Q 037807 67 PNPKKVLLIGGGDGGILREISR-HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHV-CDGSEYLKTVQSGTFD 144 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~fD 144 (299)
.++++||+||.+.|..+.+++. .+...+++.||+|++..+.|++++...+. +++++++. +|+.+.+.+...+.||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~---~~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV---DDRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC---cceEEEEecCcHHHHHHhccCCCcc
Confidence 4799999999999999999987 34367899999999999999999987632 45699999 6999999863368999
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+|++|...... ++||+.+.+.|+|||++++.
T Consensus 135 liFIDadK~~y-------p~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 135 LVFIDADKADY-------PEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEEEeCChhhC-------HHHHHHHHHHhCCCcEEEEe
Confidence 99999766532 88999999999999999984
No 36
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.40 E-value=6.3e-12 Score=107.96 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=81.8
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.+..+|||||||+|.++..+++..+..+|+++|+++.+++.+++++.... -++++++.+|+...+ .++||+|
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~----~~~i~~~~~d~~~~~----~~~~D~v 101 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG----CGNIDIIPGEAPIEL----PGKADAI 101 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCeEEEecCchhhc----CcCCCEE
Confidence 46789999999999999999886555789999999999999999876541 246999999975322 4679999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+++.... ...++++.+.+.|+|||.++++.
T Consensus 102 ~~~~~~~-------~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 102 FIGGSGG-------NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EECCCcc-------CHHHHHHHHHHhcCCCeEEEEEE
Confidence 9874321 12678999999999999998853
No 37
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.40 E-value=7.4e-13 Score=117.81 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=74.0
Q ss_pred CCCCeEEEEeccccHHHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGDGGILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.++.+|||+|||+|.+++.++++ .+..+|+++|+++.|++.|++.+... ...+++++.+|+.+.-- ++++||+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~----~~~~i~~v~~da~~lp~--~d~sfD~ 119 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE----GLQNIEFVQGDAEDLPF--PDNSFDA 119 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT----T--SEEEEE-BTTB--S---TT-EEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh----CCCCeeEEEcCHHHhcC--CCCceeE
Confidence 45789999999999999999886 34568999999999999999987754 23489999999987543 3689999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
|++-..-..-+. ....+++++|+|||||.+++-
T Consensus 120 v~~~fglrn~~d----~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 120 VTCSFGLRNFPD----RERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp EEEES-GGG-SS----HHHHHHHHHHHEEEEEEEEEE
T ss_pred EEHHhhHHhhCC----HHHHHHHHHHHcCCCeEEEEe
Confidence 998432211111 167899999999999998874
No 38
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.40 E-value=2.8e-12 Score=114.29 Aligned_cols=106 Identities=24% Similarity=0.257 Sum_probs=87.7
Q ss_pred CCCCeEEEEeccccHHHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc----CCC
Q 037807 67 PNPKKVLLIGGGDGGILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV----QSG 141 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~----~~~ 141 (299)
.++++||+||+|+|..+.++++. ++..+|+++|+|++.++.|++++...+ + ..+++++.+|+.+.+.+. +.+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l-~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--V-DHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHHhCCCCC
Confidence 36889999999999999988874 446799999999999999999987653 2 368999999999988653 136
Q ss_pred CccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 142 TFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 142 ~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+||+|++|...+.. .+++..+.+.|+|||++++.
T Consensus 144 ~fD~VfiDa~k~~y-------~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 144 EFDFAFVDADKPNY-------VHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCEEEECCCHHHH-------HHHHHHHHHhcCCCeEEEEE
Confidence 89999999764321 67899999999999999873
No 39
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.39 E-value=3.2e-12 Score=117.09 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=106.1
Q ss_pred CCcccEEEEEecCCceEEEEcCeeeccCcchhhHHH-HHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEE
Q 037807 21 SEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQE-MITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICE 99 (299)
Q Consensus 21 s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e-~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VE 99 (299)
-|.|+| +-+...+|+-+.++..+.+..++....-+ .+..+ .......+|||+|||+|.++..+++..+..+|+++|
T Consensus 69 ~pl~yi-~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~--~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avD 145 (284)
T TIGR00536 69 VPVAYL-LGSKEFYGLEFFVNEHVLIPRPETEELVEKALASL--ISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVD 145 (284)
T ss_pred CCHHHH-hCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHh--hhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEE
Confidence 466776 55555678878887666555554222222 22211 111222689999999999999999865557899999
Q ss_pred CCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCC-------------CCCC------
Q 037807 100 IDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRP-------------GHDL------ 160 (299)
Q Consensus 100 id~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~-------------~~~l------ 160 (299)
+++++++.|+++....+ + ..+++++.+|..+.+. .++||+|++|++..... ...|
T Consensus 146 is~~al~~a~~n~~~~~--~-~~~v~~~~~d~~~~~~---~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dg 219 (284)
T TIGR00536 146 ISPDALAVAEENAEKNQ--L-EHRVEFIQSNLFEPLA---GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDG 219 (284)
T ss_pred CCHHHHHHHHHHHHHcC--C-CCcEEEEECchhccCc---CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcH
Confidence 99999999999876542 1 2469999999876542 34899999987542110 0011
Q ss_pred --CcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 161 --FEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 161 --~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
....+++.+.+.|+|||.+++..+.
T Consensus 220 l~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 220 LNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 1245777888899999999987643
No 40
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.39 E-value=1.2e-11 Score=107.40 Aligned_cols=121 Identities=19% Similarity=0.234 Sum_probs=93.0
Q ss_pred CCCCeEEEEeccccHHHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGDGGILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.+..+|||+|||+|.++.++++. .+..+|+++|+++.+++.+++++...+. ..+++++.+|+.+++... .+.||.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~---~~~v~~~~~d~~~~l~~~-~~~~D~ 114 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV---LNNIVLIKGEAPEILFTI-NEKFDR 114 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC---CCCeEEEEechhhhHhhc-CCCCCE
Confidence 45679999999999999998874 3446899999999999999998775421 357999999998887654 478999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhh
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHR 202 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~ 202 (299)
|+++.... ...++++.+.+.|+|||.+++... ..+.+..+.+.+++
T Consensus 115 V~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~~~l~~ 160 (198)
T PRK00377 115 IFIGGGSE-------KLKEIISASWEIIKKGGRIVIDAI----LLETVNNALSALEN 160 (198)
T ss_pred EEECCCcc-------cHHHHHHHHHHHcCCCcEEEEEee----cHHHHHHHHHHHHH
Confidence 99864221 126789999999999999997432 33445666667754
No 41
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.39 E-value=6e-12 Score=118.82 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=100.0
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
....+||||||+|..+..+++..+...+++||+++.+++.+.+..... .-+++.++.+|+..++...+++.+|.|+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~----gL~NV~~i~~DA~~ll~~~~~~s~D~I~ 197 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL----NLKNLLIINYDARLLLELLPSNSVEKIF 197 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----CCCcEEEEECCHHHhhhhCCCCceeEEE
Confidence 345899999999999999998655678999999999999998877543 2357999999998876555578999999
Q ss_pred EcCCCCCCCC--CCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhh
Q 037807 148 IDAFDPIRPG--HDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHR 202 (299)
Q Consensus 148 ~D~~~~~~~~--~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~ 202 (299)
+..++|+.-. .++...+|++.++++|+|||.+.+.+.+. ..+..+.+.+.+
T Consensus 198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~----~y~~~~~e~~~~ 250 (390)
T PRK14121 198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE----LYFEFSLELFLK 250 (390)
T ss_pred EeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH----HHHHHHHHHHHh
Confidence 9988887332 35667899999999999999999876543 334444444433
No 42
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.38 E-value=4.2e-12 Score=114.31 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=83.5
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.+..+|||||||+|.++..+++..+..+|++||+++.+++.|++.+ ++++++.+|+..+.. .++||+|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~~---~~~fD~v 97 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQP---PQALDLI 97 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccCC---CCCccEE
Confidence 4568999999999999999987645578999999999999999864 367899999876642 4689999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
++...-...+. ...+++.+.+.|+|||.++++...
T Consensus 98 ~~~~~l~~~~d----~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 98 FANASLQWLPD----HLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred EEccChhhCCC----HHHHHHHHHHhcCCCcEEEEECCC
Confidence 99765433222 267999999999999999987533
No 43
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.38 E-value=5.5e-12 Score=113.62 Aligned_cols=107 Identities=21% Similarity=0.386 Sum_probs=83.6
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+++.+|||+|||+|..+..+++.. .+|++||+++++++.|+++....+ -.++++++.+|+.+..... +++||+|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~g---~~~~v~~~~~d~~~l~~~~-~~~fD~V 116 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAKG---VSDNMQFIHCAAQDIAQHL-ETPVDLI 116 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC---CccceEEEEcCHHHHhhhc-CCCCCEE
Confidence 456899999999999999999873 689999999999999999876431 1368999999998864332 5789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
++...-..... ...+++.+.+.|||||++++..
T Consensus 117 ~~~~vl~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 117 LFHAVLEWVAD----PKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred EehhHHHhhCC----HHHHHHHHHHHcCCCeEEEEEE
Confidence 98543211111 1678999999999999998743
No 44
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.37 E-value=2e-12 Score=111.20 Aligned_cols=117 Identities=16% Similarity=0.272 Sum_probs=98.3
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHH
Q 037807 54 YQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSE 133 (299)
Q Consensus 54 Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~ 133 (299)
-.+.++++++. .+.+|.|||||.|..+..++++.+...|+++|-|++|++.|++.+ |++++..+|.+.
T Consensus 19 a~dLla~Vp~~---~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~ 86 (257)
T COG4106 19 ARDLLARVPLE---RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRT 86 (257)
T ss_pred HHHHHhhCCcc---ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhh
Confidence 35678888775 688999999999999999998878899999999999999998876 478999999998
Q ss_pred HHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccc
Q 037807 134 YLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQ 189 (299)
Q Consensus 134 ~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~ 189 (299)
|-. +...|+|+.+..-.+-|.. .+.|..+...|+|||++.+|....+..
T Consensus 87 w~p---~~~~dllfaNAvlqWlpdH----~~ll~rL~~~L~Pgg~LAVQmPdN~de 135 (257)
T COG4106 87 WKP---EQPTDLLFANAVLQWLPDH----PELLPRLVSQLAPGGVLAVQMPDNLDE 135 (257)
T ss_pred cCC---CCccchhhhhhhhhhcccc----HHHHHHHHHhhCCCceEEEECCCccCc
Confidence 843 6789999998766554443 678999999999999999998654433
No 45
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.37 E-value=1.2e-12 Score=98.54 Aligned_cols=95 Identities=16% Similarity=0.298 Sum_probs=74.0
Q ss_pred EEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCC
Q 037807 73 LLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFD 152 (299)
Q Consensus 73 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~ 152 (299)
||||||+|..+..++++ +..+|+++|+++++++.+++... ..+++++.+|+.++. .++++||+|++...-
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~-------~~~~~~~~~d~~~l~--~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK-------NEGVSFRQGDAEDLP--FPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT-------TSTEEEEESBTTSSS--S-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc-------ccCchheeehHHhCc--cccccccccccccce
Confidence 89999999999999998 46899999999999999999875 346779999987762 237899999985433
Q ss_pred CCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 153 PIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 153 ~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
..... ...+++++.|.|||||.+++
T Consensus 71 ~~~~~----~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHLED----PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGSSH----HHHHHHHHHHHEEEEEEEEE
T ss_pred eeccC----HHHHHHHHHHHcCcCeEEeC
Confidence 21111 27899999999999999975
No 46
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.37 E-value=2.1e-11 Score=105.52 Aligned_cols=105 Identities=20% Similarity=0.237 Sum_probs=83.5
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
....+|||+|||+|.++.++++..+..+|++||+|+++++.+++++... .-.+++++.+|+.+.+... ...+|.|
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~----~~~~v~~~~~d~~~~~~~~-~~~~d~v 113 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF----GVKNVEVIEGSAPECLAQL-APAPDRV 113 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----CCCCeEEEECchHHHHhhC-CCCCCEE
Confidence 3567999999999999999987544578999999999999999988654 2247999999997755433 3457888
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecC
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
+++...+ -.++++.+.+.|+|||.+++...
T Consensus 114 ~~~~~~~--------~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 114 CIEGGRP--------IKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred EEECCcC--------HHHHHHHHHHhcCCCeEEEEEee
Confidence 8874321 26889999999999999998753
No 47
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.36 E-value=4.2e-12 Score=114.33 Aligned_cols=99 Identities=17% Similarity=0.240 Sum_probs=79.9
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
..+.+|||||||+|.+++.+++..+..+|+++|+++.+++.|++. +++++.+|+.++.. .++||+|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~~---~~~fD~v 93 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWKP---KPDTDVV 93 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCCC---CCCceEE
Confidence 457899999999999999998764456899999999999999752 47788999876632 5789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
++...-...+. ...+++.++++|||||.++++.
T Consensus 94 ~~~~~l~~~~d----~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 94 VSNAALQWVPE----HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEehhhhhCCC----HHHHHHHHHHhCCCCcEEEEEc
Confidence 99665433222 1778999999999999999875
No 48
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.36 E-value=7e-12 Score=118.62 Aligned_cols=135 Identities=14% Similarity=0.172 Sum_probs=96.1
Q ss_pred HHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHH
Q 037807 57 MITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLK 136 (299)
Q Consensus 57 ~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~ 136 (299)
++.+++.. ...+|||||||+|.++..+++..+..+|++||+|+.+++.|++++..+... ...+++++.+|+.+.+.
T Consensus 220 lL~~lp~~---~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 220 FMQHLPEN---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHhCCcc---cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEccccccCC
Confidence 44555432 246999999999999999988655679999999999999999988654210 12478999999866542
Q ss_pred hcCCCCccEEEEcCCCCCCCCC-CCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcC
Q 037807 137 TVQSGTFDAIIIDAFDPIRPGH-DLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFK 205 (299)
Q Consensus 137 ~~~~~~fDvIi~D~~~~~~~~~-~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~ 205 (299)
+++||+|+++++...+... .-....+++.++++|+|||.+.+-... . ......|++.|.
T Consensus 296 ---~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr-~------l~y~~~L~~~fg 355 (378)
T PRK15001 296 ---PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR-H------LDYFHKLKKIFG 355 (378)
T ss_pred ---CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec-C------cCHHHHHHHHcC
Confidence 4689999999876543210 011357899999999999998874311 1 124456666783
No 49
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.36 E-value=3.3e-11 Score=107.61 Aligned_cols=110 Identities=20% Similarity=0.317 Sum_probs=84.4
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+++.+|||+|||+|..+..+++..+..+++++|+++.+++.+++++... .-++++++.+|+.+.+. .++||+|
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~~~---~~~fD~V 158 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL----GLDNVTFLQSDWFEPLP---GGKFDLI 158 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc----CCCeEEEEECchhccCc---CCceeEE
Confidence 3457999999999999999998655568999999999999999987654 22479999999877442 5789999
Q ss_pred EEcCCCCCCCC-----CCC-----------------CcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPG-----HDL-----------------FEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~-----~~l-----------------~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+++++...... ... ....+++.+.+.|+|||.+++..
T Consensus 159 i~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 159 VSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred EECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 99876432110 000 01367889999999999999864
No 50
>PLN02476 O-methyltransferase
Probab=99.35 E-value=6.7e-12 Score=113.88 Aligned_cols=106 Identities=20% Similarity=0.316 Sum_probs=88.7
Q ss_pred CCCCeEEEEeccccHHHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc----CCC
Q 037807 67 PNPKKVLLIGGGDGGILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV----QSG 141 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~----~~~ 141 (299)
.++++||+||+|+|..+.++++. ++..+|+.+|+|++..+.|++++...+ + ..+++++.+|+.+.+.+. ..+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l-~~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--V-SHKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CCcEEEEEcCHHHHHHHHHhcccCC
Confidence 36899999999999999999873 435679999999999999999998653 2 368999999999998753 135
Q ss_pred CccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 142 TFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 142 ~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+||+|++|..... ..++|+.+.+.|+|||++++.
T Consensus 194 ~FD~VFIDa~K~~-------Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 194 SYDFAFVDADKRM-------YQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CCCEEEECCCHHH-------HHHHHHHHHHhcCCCcEEEEe
Confidence 8999999986532 278899999999999999974
No 51
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.35 E-value=9.3e-12 Score=111.71 Aligned_cols=108 Identities=13% Similarity=0.146 Sum_probs=81.7
Q ss_pred CCCCeEEEEeccccHHHHHHHh--cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCcc
Q 037807 67 PNPKKVLLIGGGDGGILREISR--HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~--~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fD 144 (299)
++..+|||||||+|..+..+++ ..+..++++||+++.|++.|++++...+ ...+++++.+|+.+.. ...+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~---~~~~v~~~~~d~~~~~----~~~~D 127 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIRDIA----IENAS 127 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEeCChhhCC----CCCCC
Confidence 4568999999999999988877 3345789999999999999999876531 1348999999976642 34599
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+|++...-...+.. -...+++.+++.|+|||.|++..
T Consensus 128 ~vv~~~~l~~l~~~--~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 128 MVVLNFTLQFLEPS--ERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred EEehhhHHHhCCHH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 99975432211111 02578999999999999998854
No 52
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.35 E-value=5.6e-11 Score=103.26 Aligned_cols=145 Identities=9% Similarity=0.097 Sum_probs=98.6
Q ss_pred cEEEEEecCCceEEEEcCeeeccCcc-hhhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHH
Q 037807 25 NMMVFQSSSYGKVFVLDGALQLTEKD-ECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTM 103 (299)
Q Consensus 25 ~i~v~e~~~~g~~l~ldg~~q~~~~d-e~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~ 103 (299)
.+.|+-.+..|+.|..-..... .+. +..+..++..+... .+..+|||+|||+|.++.+++... ..+|++||+|+.
T Consensus 12 ~mrIi~g~~~g~~l~~~~~~~~-Rp~~d~v~e~l~~~l~~~--~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~ 87 (199)
T PRK10909 12 QIRIIGGQWRGRKLPVPDSPGL-RPTTDRVRETLFNWLAPV--IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRA 87 (199)
T ss_pred CEEEEeeccCCCEeCCCCCCCc-CcCCHHHHHHHHHHHhhh--cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHH
Confidence 4677777666776655211111 111 12333344433211 245799999999999999866553 478999999999
Q ss_pred HHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHh--cCCCcEEEE
Q 037807 104 LINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKA--LRPGGAMCI 181 (299)
Q Consensus 104 vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~--LkpgGvlv~ 181 (299)
.++.+++++..++ -.+++++.+|+.+++... .+.||+|++|++...+. ..+.++.+.+. |+|+|++++
T Consensus 88 a~~~a~~Nl~~~~----~~~v~~~~~D~~~~l~~~-~~~fDlV~~DPPy~~g~-----~~~~l~~l~~~~~l~~~~iv~v 157 (199)
T PRK10909 88 VAQQLIKNLATLK----AGNARVVNTNALSFLAQP-GTPHNVVFVDPPFRKGL-----LEETINLLEDNGWLADEALIYV 157 (199)
T ss_pred HHHHHHHHHHHhC----CCcEEEEEchHHHHHhhc-CCCceEEEECCCCCCCh-----HHHHHHHHHHCCCcCCCcEEEE
Confidence 9999999987652 237999999999988543 45799999998853321 24455655553 799999998
Q ss_pred ec
Q 037807 182 QA 183 (299)
Q Consensus 182 ~~ 183 (299)
..
T Consensus 158 e~ 159 (199)
T PRK10909 158 ES 159 (199)
T ss_pred Ee
Confidence 65
No 53
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.34 E-value=3.7e-11 Score=101.92 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=99.5
Q ss_pred CCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCcc
Q 037807 65 SIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 65 ~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fD 144 (299)
...+...++|||||+|+++.+++...+..+|+++|-|++.++..+++...+ .-++++++.+|+-+.+.+. .++|
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f----g~~n~~vv~g~Ap~~L~~~--~~~d 104 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF----GVDNLEVVEGDAPEALPDL--PSPD 104 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh----CCCcEEEEeccchHhhcCC--CCCC
Confidence 334567899999999999999998667889999999999999999998876 3579999999999999864 3899
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhh
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRI 203 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~ 203 (299)
.|++..... -.+.++.+..+|+|||.+|+|+.. .+....+++.+++.
T Consensus 105 aiFIGGg~~--------i~~ile~~~~~l~~ggrlV~nait----lE~~~~a~~~~~~~ 151 (187)
T COG2242 105 AIFIGGGGN--------IEEILEAAWERLKPGGRLVANAIT----LETLAKALEALEQL 151 (187)
T ss_pred EEEECCCCC--------HHHHHHHHHHHcCcCCeEEEEeec----HHHHHHHHHHHHHc
Confidence 999875532 278999999999999999998632 34455666666554
No 54
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.32 E-value=1.8e-11 Score=113.76 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=80.2
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEE
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIII 148 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~ 148 (299)
..+|||||||+|..+..+++.. .+|++||+++++++.|+++..... ...+++++.+|+.++.. .+++||+|++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g--~~V~GID~s~~~i~~Ar~~~~~~~---~~~~i~~~~~dae~l~~--~~~~FD~Vi~ 204 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMG--ATVTGVDAVDKNVKIARLHADMDP---VTSTIEYLCTTAEKLAD--EGRKFDAVLS 204 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhcC---cccceeEEecCHHHhhh--ccCCCCEEEE
Confidence 4689999999999999887752 589999999999999998754321 13489999999877643 2578999998
Q ss_pred cC-CCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecC
Q 037807 149 DA-FDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 149 D~-~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
-. ..+... ..+|++.++++|||||.+++...
T Consensus 205 ~~vLeHv~d-----~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 205 LEVIEHVAN-----PAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred hhHHHhcCC-----HHHHHHHHHHHcCCCcEEEEEEC
Confidence 32 211111 17899999999999999998653
No 55
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.32 E-value=1.3e-11 Score=111.76 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=82.0
Q ss_pred CCCCeEEEEeccccHHHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGDGGILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
++..+|||||||+|.++..++++ ++..+|++||++++|++.|++..+..... ..++++++.+|+.+.- .++++||+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~lp--~~~~sfD~ 148 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATDLP--FDDCYFDA 148 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccccCC--CCCCCEeE
Confidence 35679999999999999988875 33468999999999999998765421110 1358999999987642 23578999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|++...-...+. ...++++++++|||||.+++..
T Consensus 149 V~~~~~l~~~~d----~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 149 ITMGYGLRNVVD----RLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EEEecccccCCC----HHHHHHHHHHHcCcCcEEEEEE
Confidence 998543222111 2779999999999999987743
No 56
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.32 E-value=5.3e-11 Score=107.93 Aligned_cols=153 Identities=20% Similarity=0.256 Sum_probs=102.0
Q ss_pred CcccEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECC
Q 037807 22 EYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEID 101 (299)
Q Consensus 22 ~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid 101 (299)
|.|+| +-....+|..+.++..+....++.....+.+... ....++.+|||+|||+|..+..+++..+..+++++|++
T Consensus 65 p~~~i-~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~--~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis 141 (275)
T PRK09328 65 PLQYI-LGEAEFWGLDFKVSPGVLIPRPETEELVEWALEA--LLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDIS 141 (275)
T ss_pred CHHHH-ceeceEcCcEEEECCCceeCCCCcHHHHHHHHHh--ccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECC
Confidence 44554 3333445666666655444444433333332211 11235678999999999999999987656789999999
Q ss_pred HHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCC--------------CCCCCC------
Q 037807 102 TMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIR--------------PGHDLF------ 161 (299)
Q Consensus 102 ~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~--------------~~~~l~------ 161 (299)
+.+++.+++++... ...+++++.+|..+.+. .++||+|+++++.... +...++
T Consensus 142 ~~~l~~a~~n~~~~----~~~~i~~~~~d~~~~~~---~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~ 214 (275)
T PRK09328 142 PEALAVARRNAKHG----LGARVEFLQGDWFEPLP---GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGL 214 (275)
T ss_pred HHHHHHHHHHHHhC----CCCcEEEEEccccCcCC---CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHH
Confidence 99999999987611 24589999999855432 4689999998754211 111111
Q ss_pred --cHHHHHHHHHhcCCCcEEEEecC
Q 037807 162 --EGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 162 --t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
...+++.+.+.|+|||.+++..+
T Consensus 215 ~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 215 DFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEEC
Confidence 14577778899999999998653
No 57
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.31 E-value=1.9e-11 Score=107.33 Aligned_cols=101 Identities=22% Similarity=0.243 Sum_probs=80.0
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCC-ccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHAS-VEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.+..+|||||||+|..+..+++..+ ..+|++||+++++++.|++++... ...+++++.+|+.+.... ..+||+
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~----g~~~v~~~~~d~~~~~~~--~~~fD~ 149 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL----GLDNVIVIVGDGTQGWEP--LAPYDR 149 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC----CCCCeEEEECCcccCCcc--cCCCCE
Confidence 4568999999999999999887642 346999999999999999998765 235799999999775432 468999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+++...+. ..+.+.+.|+|||++++..
T Consensus 150 Ii~~~~~~~----------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 150 IYVTAAGPK----------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred EEEcCCccc----------ccHHHHHhcCcCcEEEEEE
Confidence 999864321 2345788999999999854
No 58
>PRK14967 putative methyltransferase; Provisional
Probab=99.31 E-value=6e-11 Score=104.79 Aligned_cols=106 Identities=13% Similarity=0.157 Sum_probs=81.3
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+..+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++++... ..+++++.+|..+.+. +++||+|+
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~-----~~~~~~~~~d~~~~~~---~~~fD~Vi 106 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA-----GVDVDVRRGDWARAVE---FRPFDVVV 106 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh-----CCeeEEEECchhhhcc---CCCeeEEE
Confidence 45799999999999999988863 458999999999999999987654 2368899999877543 56899999
Q ss_pred EcCCCCCCCCC-----------------CCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 148 IDAFDPIRPGH-----------------DLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 148 ~D~~~~~~~~~-----------------~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
++++....... ......+++.+.+.|++||++++.
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 98653221110 001245788899999999999874
No 59
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.30 E-value=1.6e-11 Score=115.09 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=82.8
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEE
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIII 148 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~ 148 (299)
..+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++... .-..+++.+|+...+ .++||+|++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n-----~l~~~~~~~D~~~~~----~~~fDlIvs 267 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN-----GLEGEVFASNVFSDI----KGRFDMIIS 267 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCEEEEccccccc----CCCccEEEE
Confidence 46899999999999999998755568999999999999999988764 224577888876542 468999999
Q ss_pred cCCCCCCCCCC-CCcHHHHHHHHHhcCCCcEEEEec
Q 037807 149 DAFDPIRPGHD-LFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 149 D~~~~~~~~~~-l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+++-+.+.... -....+++.+.+.|+|||.+++-+
T Consensus 268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 97655432211 113789999999999999887644
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.30 E-value=4.2e-11 Score=102.10 Aligned_cols=105 Identities=18% Similarity=0.250 Sum_probs=81.2
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
++.+||++|||+|..+..+++... +|+++|+|+.+++.+++++... ..+++++.+|..+.. .++||+|+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~----~~~fD~Vi 87 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN-----NVGLDVVMTDLFKGV----RGKFDVIL 87 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-----CCceEEEEccccccc----CCcccEEE
Confidence 457899999999999999988643 8999999999999999988653 346889999976643 35899999
Q ss_pred EcCCCCCCCC-----C------------CCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 148 IDAFDPIRPG-----H------------DLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 148 ~D~~~~~~~~-----~------------~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
++.+...... . ......+++.+.+.|+|||.+++..
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 9875421110 0 0013578999999999999988754
No 61
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.30 E-value=1.8e-11 Score=106.13 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=78.2
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
++.+|||+|||+|..+..++++. .+|+++|+++.+++.+++..... .-.+++++..|..++- . +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g--~~V~gvD~S~~~i~~a~~~~~~~----~~~~v~~~~~d~~~~~--~-~~~fD~I~ 100 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANG--FDVTAWDKNPMSIANLERIKAAE----NLDNLHTAVVDLNNLT--F-DGEYDFIL 100 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHc----CCCcceEEecChhhCC--c-CCCcCEEE
Confidence 46899999999999999999873 58999999999999999876543 1245888999976642 2 46799999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
+...-...+.. -...+++.+.+.|+|||.+++
T Consensus 101 ~~~~~~~~~~~--~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 101 STVVLMFLEAK--TIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EecchhhCCHH--HHHHHHHHHHHHcCCCcEEEE
Confidence 86442211111 126899999999999998543
No 62
>PRK04266 fibrillarin; Provisional
Probab=99.29 E-value=1.4e-10 Score=102.77 Aligned_cols=103 Identities=18% Similarity=0.200 Sum_probs=78.5
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHH--HhcCCCCcc
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYL--KTVQSGTFD 144 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l--~~~~~~~fD 144 (299)
.+..+|||+|||+|.++..+++.-+..+|+++|+++.|++.+++.... .+++.++.+|+.... ... .++||
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~l-~~~~D 143 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAHV-VEKVD 143 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhhc-cccCC
Confidence 356799999999999999998864345899999999999977766542 257899999986421 111 35699
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+|++|..+|.. ...+++.+++.|||||.+++.
T Consensus 144 ~i~~d~~~p~~------~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 144 VIYQDVAQPNQ------AEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred EEEECCCChhH------HHHHHHHHHHhcCCCcEEEEE
Confidence 99998765421 134688999999999999884
No 63
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.29 E-value=4.3e-12 Score=98.02 Aligned_cols=96 Identities=23% Similarity=0.443 Sum_probs=72.4
Q ss_pred EEEEeccccHHHHHHHhcC---CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEE
Q 037807 72 VLLIGGGDGGILREISRHA---SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIII 148 (299)
Q Consensus 72 VL~IG~G~G~~~~~l~~~~---~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~ 148 (299)
|||+|||+|..++.+++.. +..++++||+|+++++.+++.+... ..+++++++|+.++-. . .++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-----~~~~~~~~~D~~~l~~-~-~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-----GPKVRFVQADARDLPF-S-DGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-----TTTSEEEESCTTCHHH-H-SSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-----CCceEEEECCHhHCcc-c-CCCeeEEEE
Confidence 7999999999999999763 2368999999999999999998653 3589999999988643 3 679999998
Q ss_pred -cC-CCCCCCCCCCCcHHHHHHHHHhcCCCc
Q 037807 149 -DA-FDPIRPGHDLFEGPFFELVAKALRPGG 177 (299)
Q Consensus 149 -D~-~~~~~~~~~l~t~ef~~~~~~~LkpgG 177 (299)
.. .....+.. ...+++.+.++|+|||
T Consensus 74 ~~~~~~~~~~~~---~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEE---LEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHH---HHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHH---HHHHHHHHHHHhCCCC
Confidence 33 22211111 2678999999999998
No 64
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=1.7e-11 Score=110.78 Aligned_cols=105 Identities=19% Similarity=0.300 Sum_probs=87.3
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.+..+|||||||.|++++.++++.+ .+|++|++|++..+.+++.+...+ + ..+++++..|-+++ .++||-|
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~-v~V~GvTlS~~Q~~~~~~r~~~~g--l-~~~v~v~l~d~rd~-----~e~fDrI 141 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYG-VTVVGVTLSEEQLAYAEKRIAARG--L-EDNVEVRLQDYRDF-----EEPFDRI 141 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcC-CEEEEeeCCHHHHHHHHHHHHHcC--C-CcccEEEecccccc-----cccccee
Confidence 5678999999999999999998764 589999999999999999877652 2 25899999997776 4569999
Q ss_pred EE-cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 II-DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~-D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
++ ..+...+... -..||+.+++.|+|||++++++
T Consensus 142 vSvgmfEhvg~~~---~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 142 VSVGMFEHVGKEN---YDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred eehhhHHHhCccc---HHHHHHHHHhhcCCCceEEEEE
Confidence 97 5566555432 2889999999999999999987
No 65
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.29 E-value=2.7e-11 Score=106.36 Aligned_cols=101 Identities=23% Similarity=0.261 Sum_probs=79.2
Q ss_pred CCCCeEEEEeccccHHHHHHHhcC-CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHA-SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.+..+|||||||+|..+..+++.. ...+|++||+++++++.+++++... .-.+++++.+|+...... ...||+
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~----g~~~v~~~~gd~~~~~~~--~~~fD~ 148 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL----GYDNVEVIVGDGTLGYEE--NAPYDR 148 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCCeEEEECCcccCCCc--CCCcCE
Confidence 456899999999999998888753 2368999999999999999998754 235799999998765432 478999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+++..-+ +..+.+.+.|+|||++++..
T Consensus 149 I~~~~~~~----------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 149 IYVTAAGP----------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEECCCcc----------cchHHHHHhhCCCcEEEEEE
Confidence 99875432 12345677899999999843
No 66
>PLN02244 tocopherol O-methyltransferase
Probab=99.28 E-value=2e-11 Score=114.65 Aligned_cols=107 Identities=20% Similarity=0.288 Sum_probs=82.4
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.++.+|||||||+|.+++.+++.. ..+|++||+++.+++.+++.....+ -.++++++.+|+.+... ++++||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g---~~~~v~~~~~D~~~~~~--~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG---LSDKVSFQVADALNQPF--EDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEcCcccCCC--CCCCccEE
Confidence 356899999999999999999864 3589999999999999998765431 13579999999876422 35789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
++.......+. ...+++++.++|||||.|++..
T Consensus 191 ~s~~~~~h~~d----~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 191 WSMESGEHMPD----KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred EECCchhccCC----HHHHHHHHHHHcCCCcEEEEEE
Confidence 98433221111 2679999999999999998854
No 67
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=3.4e-11 Score=109.29 Aligned_cols=133 Identities=17% Similarity=0.256 Sum_probs=98.2
Q ss_pred HHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHH
Q 037807 57 MITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLK 136 (299)
Q Consensus 57 ~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~ 136 (299)
.+.+++.. ...+|||+|||.|.++..+++..+..++++||+|...++.||+++..+. -.+..++..|..+-++
T Consensus 150 Ll~~l~~~---~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~----~~~~~v~~s~~~~~v~ 222 (300)
T COG2813 150 LLETLPPD---LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG----VENTEVWASNLYEPVE 222 (300)
T ss_pred HHHhCCcc---CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC----CCccEEEEeccccccc
Confidence 34555432 2349999999999999999998778899999999999999999988652 1223788888766543
Q ss_pred hcCCCCccEEEEcCCCCCCCCC-CCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCCce
Q 037807 137 TVQSGTFDAIIIDAFDPIRPGH-DLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKGSA 208 (299)
Q Consensus 137 ~~~~~~fDvIi~D~~~~~~~~~-~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~~v 208 (299)
++||+||++++-+.+... .-...++++...++|++||-|.+-... +......|++.| +.+
T Consensus 223 ----~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~-------~l~y~~~L~~~F-g~v 283 (300)
T COG2813 223 ----GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR-------HLPYEKKLKELF-GNV 283 (300)
T ss_pred ----ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC-------CCChHHHHHHhc-CCE
Confidence 489999999887765432 112358999999999999976653321 122456777888 444
No 68
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.28 E-value=5e-11 Score=121.71 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=90.1
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+.++||++|||+|+++..+++. +..+|++||+|+.+++.|++++..++ ++..+++++.+|+.+++++. .++||+||
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng--~~~~~v~~i~~D~~~~l~~~-~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNG--LSGRQHRLIQADCLAWLKEA-REQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC--CCccceEEEEccHHHHHHHc-CCCcCEEE
Confidence 4689999999999999999986 45689999999999999999987652 23358999999999999765 67899999
Q ss_pred EcCCCCCCCCC--CCC-----cHHHHHHHHHhcCCCcEEEEecCC
Q 037807 148 IDAFDPIRPGH--DLF-----EGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 148 ~D~~~~~~~~~--~l~-----t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
+|++.-..... ..+ -.+++..+.+.|+|||++++.+.+
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99875321110 111 145677888999999999886543
No 69
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=5.6e-11 Score=105.08 Aligned_cols=118 Identities=25% Similarity=0.362 Sum_probs=98.8
Q ss_pred CCCCeEEEEeccccHHHHHHHh-cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGDGGILREISR-HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.+..+||+.|.|+|.++..+++ -.+..+|+.+|+.++..+.|++++... ++. .++++..+|..+... .+.||+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--~l~-d~v~~~~~Dv~~~~~---~~~vDa 166 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLG-DRVTLKLGDVREGID---EEDVDA 166 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--ccc-cceEEEecccccccc---ccccCE
Confidence 3568999999999999999997 344579999999999999999999876 333 359999999998875 458999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhh
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRI 203 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~ 203 (299)
|++|.++| .++++.+++.|+|||.+++.+ |+ .+....++..|++.
T Consensus 167 v~LDmp~P---------W~~le~~~~~Lkpgg~~~~y~--P~--veQv~kt~~~l~~~ 211 (256)
T COG2519 167 VFLDLPDP---------WNVLEHVSDALKPGGVVVVYS--PT--VEQVEKTVEALRER 211 (256)
T ss_pred EEEcCCCh---------HHHHHHHHHHhCCCcEEEEEc--CC--HHHHHHHHHHHHhc
Confidence 99999999 778999999999999999864 33 34467777788776
No 70
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.28 E-value=3.9e-11 Score=107.41 Aligned_cols=106 Identities=17% Similarity=0.142 Sum_probs=88.8
Q ss_pred CCCCeEEEEeccccHHHHHHHh-cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcC-----C
Q 037807 67 PNPKKVLLIGGGDGGILREISR-HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQ-----S 140 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~-----~ 140 (299)
.++++||+||++.|..+.++++ .++..+|+.+|+|++..+.|++++...+ + ..+++++.+|+.+.+.+.. .
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~-~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--V-AHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--C-CCceEEEeccHHHHHHHHHhccccC
Confidence 3689999999999999999986 3445789999999999999999997652 2 4699999999999987641 2
Q ss_pred CCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 141 GTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 141 ~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
++||+|++|..... ..++|+.+.+.|++||++++.
T Consensus 155 ~~fD~iFiDadK~~-------Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 155 GTFDFIFVDADKDN-------YINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred CcccEEEecCCHHH-------hHHHHHHHHHhcCCCeEEEEc
Confidence 68999999976432 278899999999999999974
No 71
>PLN03075 nicotianamine synthase; Provisional
Probab=99.28 E-value=2.9e-11 Score=110.40 Aligned_cols=109 Identities=17% Similarity=0.310 Sum_probs=81.7
Q ss_pred CCCeEEEEeccccHH-HHHHH-hcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 68 NPKKVLLIGGGDGGI-LREIS-RHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~-~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.+++||+||||.|.. +..++ ++.+..+++++|+|+++++.||+++... .++ .++++++.+|+.+.... .++||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-~gL-~~rV~F~~~Da~~~~~~--l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-PDL-SKRMFFHTADVMDVTES--LKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-cCc-cCCcEEEECchhhcccc--cCCcCE
Confidence 789999999997744 33333 4666678999999999999999998531 112 46899999999885322 368999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+++.--...... ..++++.+.+.|+|||++++.+
T Consensus 199 VF~~ALi~~dk~~---k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 199 VFLAALVGMDKEE---KVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEeccccccccc---HHHHHHHHHHhcCCCcEEEEec
Confidence 9998421111011 2789999999999999999975
No 72
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.27 E-value=9.4e-13 Score=101.14 Aligned_cols=99 Identities=17% Similarity=0.260 Sum_probs=60.4
Q ss_pred EEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCC
Q 037807 73 LLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFD 152 (299)
Q Consensus 73 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~ 152 (299)
||||||+|.++..++++.+..+++++|+|+.+++.+++.+.... ..+.+....+..+.......++||+|++-..-
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG----NDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-------EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC----CcceeEEEeecCChhhcccccccceehhhhhH
Confidence 79999999999999987667899999999999999998877641 22333333333333322213599999985433
Q ss_pred CCCCCCCCCcHHHHHHHHHhcCCCcEE
Q 037807 153 PIRPGHDLFEGPFFELVAKALRPGGAM 179 (299)
Q Consensus 153 ~~~~~~~l~t~ef~~~~~~~LkpgGvl 179 (299)
..-+. ..++++.+++.|+|||+|
T Consensus 77 ~~l~~----~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLED----IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S-----HHHHHHHHTTT-TSS-EE
T ss_pred hhhhh----HHHHHHHHHHHcCCCCCC
Confidence 22211 278999999999999986
No 73
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.27 E-value=1.6e-11 Score=111.72 Aligned_cols=106 Identities=23% Similarity=0.377 Sum_probs=77.3
Q ss_pred CCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 66 IPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 66 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.++..+|||||||.|+++..+++..+ .+|++|.+|++..+.+++.....+ + ..++++..+|.+++ +.+||.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~g--l-~~~v~v~~~D~~~~-----~~~fD~ 130 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREAG--L-EDRVEVRLQDYRDL-----PGKFDR 130 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST--S-SSTEEEEES-GGG--------S-SE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhcC--C-CCceEEEEeecccc-----CCCCCE
Confidence 35678999999999999999998654 479999999999999999877542 2 35899999997664 358999
Q ss_pred EEE-cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 III-DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~-D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|++ ......+.. .-..||+.+.+.|+|||+++++.
T Consensus 131 IvSi~~~Ehvg~~---~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 131 IVSIEMFEHVGRK---NYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EEEESEGGGTCGG---GHHHHHHHHHHHSETTEEEEEEE
T ss_pred EEEEechhhcChh---HHHHHHHHHHHhcCCCcEEEEEe
Confidence 997 444443321 12789999999999999999986
No 74
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.27 E-value=3.3e-11 Score=105.22 Aligned_cols=100 Identities=23% Similarity=0.271 Sum_probs=78.6
Q ss_pred CCCeEEEEeccccHHHHHHHhcC-CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHA-SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+..+|||||||+|..+..+++.. ...+|+++|+++++++.|++++...+ + ..+++++.+|+.+.+.. ..+||+|
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~-~~~v~~~~~d~~~~~~~--~~~fD~I 146 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--Y-WGVVEVYHGDGKRGLEK--HAPFDAI 146 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEECCcccCCcc--CCCccEE
Confidence 45799999999999998888753 24589999999999999999886541 1 24699999999876542 4689999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+++.... .+.+.+.+.|+|||++++.
T Consensus 147 i~~~~~~----------~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 147 IVTAAAS----------TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred EEccCcc----------hhhHHHHHhcCcCcEEEEE
Confidence 9986532 2335678899999999884
No 75
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.3e-10 Score=106.07 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=105.1
Q ss_pred CCcccEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEEC
Q 037807 21 SEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEI 100 (299)
Q Consensus 21 s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEi 100 (299)
-|-|+| +-...++|..+.++-.+-....|...-.+.+. ..... ...+|||||||+|.++..+++..+..+|+++||
T Consensus 67 ~P~~yi-~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l--~~~~~-~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Di 142 (280)
T COG2890 67 EPVAYI-LGSAEFGGLRFKVDEGVLIPRPDTELLVEAAL--ALLLQ-LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDI 142 (280)
T ss_pred CCHhHh-hccCeecceeeeeCCCceecCCchHHHHHHHH--Hhhhh-cCCcEEEecCChHHHHHHHHhhCcCCeEEEEEC
Confidence 345565 33344567788888888887887444444322 11111 122899999999999999998876679999999
Q ss_pred CHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCC-----C--------CCC-------
Q 037807 101 DTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRP-----G--------HDL------- 160 (299)
Q Consensus 101 d~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~-----~--------~~l------- 160 (299)
|+..+++|+++....+. .++.++.+|.++-+ .++||+|+++++.-... + ..|
T Consensus 143 s~~Al~~A~~Na~~~~l----~~~~~~~~dlf~~~----~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl 214 (280)
T COG2890 143 SPDALALARENAERNGL----VRVLVVQSDLFEPL----RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGL 214 (280)
T ss_pred CHHHHHHHHHHHHHcCC----ccEEEEeeeccccc----CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHH
Confidence 99999999999876521 45666666755544 35899999988642111 0 011
Q ss_pred -CcHHHHHHHHHhcCCCcEEEEecC
Q 037807 161 -FEGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 161 -~t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
....|+..+.+.|+|||++++..+
T Consensus 215 ~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 215 EVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred HHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 125677778899999999999764
No 76
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.26 E-value=8.5e-11 Score=104.81 Aligned_cols=108 Identities=12% Similarity=0.134 Sum_probs=81.9
Q ss_pred CCCCeEEEEeccccHHHHHHHhc--CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCcc
Q 037807 67 PNPKKVLLIGGGDGGILREISRH--ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fD 144 (299)
++..+|||||||+|..+..++++ .+..+++++|+++.|++.|++++.... ...+++++.+|+.++. ...+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~---~~~~v~~~~~d~~~~~----~~~~d 124 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHVE----IKNAS 124 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECChhhCC----CCCCC
Confidence 45678999999999999999874 235789999999999999999876431 1357999999987653 24689
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+|++...-+..+... ...+++.++++|+|||.+++..
T Consensus 125 ~v~~~~~l~~~~~~~--~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 125 MVILNFTLQFLPPED--RIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred EEeeecchhhCCHHH--HHHHHHHHHHhcCCCeEEEEee
Confidence 988755433221110 1578999999999999999864
No 77
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4.2e-11 Score=103.58 Aligned_cols=101 Identities=25% Similarity=0.342 Sum_probs=83.1
Q ss_pred CCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 66 IPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 66 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
..+..+||+||+|+|..+.-+++.- .+|+.||++++..+.|++++... .-.++.++++|+.....+ ...||.
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~l----g~~nV~v~~gDG~~G~~~--~aPyD~ 141 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETL----GYENVTVRHGDGSKGWPE--EAPYDR 141 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHc----CCCceEEEECCcccCCCC--CCCcCE
Confidence 3467899999999999999999874 48999999999999999998876 234599999999987764 478999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecC
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
|++...-+.-| +.+.+.|++||++++-.+
T Consensus 142 I~Vtaaa~~vP----------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 142 IIVTAAAPEVP----------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEeeccCCCC----------HHHHHhcccCCEEEEEEc
Confidence 99987665433 245678999999998443
No 78
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.25 E-value=1.9e-10 Score=103.42 Aligned_cols=131 Identities=17% Similarity=0.196 Sum_probs=87.7
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.+..+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|++++...+. ..++.+..+| .+||+|
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~~~---~~~~~~~~~~----------~~fD~V 183 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELNGV---ELNVYLPQGD----------LKADVI 183 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCC---CceEEEccCC----------CCcCEE
Confidence 467899999999999998877764 45799999999999999998765421 1234433322 279999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhh-cCCceeeeEEeecccCCcceeE
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRI-FKGSASYAWTTVPTYPSGVIGF 225 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~-F~~~v~~~~~~vP~~~~g~w~~ 225 (299)
+++..... ...+++.+.+.|+|||.+++.... ......+.+.+++. | ... .+- ..+.|..
T Consensus 184 vani~~~~-------~~~l~~~~~~~LkpgG~lilsgi~----~~~~~~v~~~l~~~Gf-~~~-----~~~--~~~~W~~ 244 (250)
T PRK00517 184 VANILANP-------LLELAPDLARLLKPGGRLILSGIL----EEQADEVLEAYEEAGF-TLD-----EVL--ERGEWVA 244 (250)
T ss_pred EEcCcHHH-------HHHHHHHHHHhcCCCcEEEEEECc----HhhHHHHHHHHHHCCC-EEE-----EEE--EeCCEEE
Confidence 98753211 256788999999999999985321 22234455555543 3 111 121 2367877
Q ss_pred Eeccc
Q 037807 226 MLCST 230 (299)
Q Consensus 226 ~~ask 230 (299)
+++.|
T Consensus 245 ~~~~~ 249 (250)
T PRK00517 245 LVGKK 249 (250)
T ss_pred EEEEe
Confidence 77655
No 79
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.25 E-value=1.5e-10 Score=106.16 Aligned_cols=118 Identities=14% Similarity=0.255 Sum_probs=86.1
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+.++|||+|||+|.++..+++.. ..+|++||+|+.+++.|++++..++. ..++.+..+|.... .+++||+|+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~---~~~~~~~~~~~~~~----~~~~fDlVv 230 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQV---SDRLQVKLIYLEQP----IEGKADVIV 230 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCC---CcceEEEecccccc----cCCCceEEE
Confidence 46899999999999999888764 57899999999999999998875421 24567777663222 256899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhc
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIF 204 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F 204 (299)
++..... ...++..+.+.|+|||.+++.. +. ......+.+.+++.|
T Consensus 231 an~~~~~-------l~~ll~~~~~~LkpgG~li~sg---i~-~~~~~~v~~~~~~~f 276 (288)
T TIGR00406 231 ANILAEV-------IKELYPQFSRLVKPGGWLILSG---IL-ETQAQSVCDAYEQGF 276 (288)
T ss_pred EecCHHH-------HHHHHHHHHHHcCCCcEEEEEe---Cc-HhHHHHHHHHHHccC
Confidence 8754211 2578899999999999999843 22 223445556665556
No 80
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.25 E-value=5.5e-11 Score=103.06 Aligned_cols=124 Identities=23% Similarity=0.323 Sum_probs=95.2
Q ss_pred eEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCccEEEEc
Q 037807 71 KVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTFDAIIID 149 (299)
Q Consensus 71 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~fDvIi~D 149 (299)
-+|+||||.|..+.++++..+...+++||+....+..+.+..... .-+++.++.+|+..++... ++++.|-|.+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~----~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR----GLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH----TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh----cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 789999999999999998656789999999999999888876654 3579999999999988765 35899999999
Q ss_pred CCCCCCC----CCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhh
Q 037807 150 AFDPIRP----GHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHR 202 (299)
Q Consensus 150 ~~~~~~~----~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~ 202 (299)
.+||+.- ...|.+.+|++.+.++|+|||.+.+.+.+ .+.+..+++.+.+
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~----~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV----EEYAEWMLEQFEE 148 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-----HHHHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC----HHHHHHHHHHHHh
Confidence 9999743 35789999999999999999999987644 3445556666655
No 81
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.25 E-value=5.5e-11 Score=104.87 Aligned_cols=103 Identities=19% Similarity=0.263 Sum_probs=81.9
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
..+.+|||||||+|..+..+++..+..+++++|+++.+++.+++.++ ++++++.+|..+... ++++||+|
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~~--~~~~fD~v 102 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLPL--EDSSFDLI 102 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCCC--CCCceeEE
Confidence 34679999999999999999986556679999999999999998753 378899999876532 25789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
++...-..... ...+++.+++.|+|||.+++..
T Consensus 103 i~~~~l~~~~~----~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 103 VSNLALQWCDD----LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred EEhhhhhhccC----HHHHHHHHHHHcCCCcEEEEEe
Confidence 98654332111 2678999999999999999864
No 82
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.25 E-value=3.7e-11 Score=105.77 Aligned_cols=104 Identities=19% Similarity=0.254 Sum_probs=79.3
Q ss_pred CeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEc
Q 037807 70 KKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIID 149 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D 149 (299)
++|||||||+|..+..+++..+..+|+++|+++++++.+++++...+ + .++++++.+|..+.. . .++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g--l-~~~i~~~~~d~~~~~--~-~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG--L-QGRIRIFYRDSAKDP--F-PDTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--C-CcceEEEecccccCC--C-CCCCCEeehH
Confidence 47999999999999999876444689999999999999999876431 1 458999999975432 1 4689999973
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 150 AFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 150 ~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
..-..... ...+++.+++.|+|||.+++..
T Consensus 75 ~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 75 EVIHHIKD----KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHHhCCC----HHHHHHHHHHHcCCCCEEEEEE
Confidence 21111111 2789999999999999999864
No 83
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.23 E-value=6.8e-11 Score=107.81 Aligned_cols=131 Identities=19% Similarity=0.188 Sum_probs=92.9
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCccEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~fDvI 146 (299)
+.++||++-|-+|+++...++- +..+|+.||+|...++++++++..++ ++..+++++.+|+++++++. ..++||+|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg--~~~~~~~~~~~Dvf~~l~~~~~~~~fD~I 199 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNG--LDLDRHRFIQGDVFKFLKRLKKGGRFDLI 199 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT---CCTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEEecCHHHHHHHHhcCCCCCEE
Confidence 5689999999999999988765 57899999999999999999988763 34568999999999998753 25799999
Q ss_pred EEcCCCCCCCCCCCC--cHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHh
Q 037807 147 IIDAFDPIRPGHDLF--EGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCH 201 (299)
Q Consensus 147 i~D~~~~~~~~~~l~--t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~ 201 (299)
|+|+|.-......+- -.+.+..+.+.|+|||++++.+.|+....+.+.++++.-.
T Consensus 200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a 256 (286)
T PF10672_consen 200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAA 256 (286)
T ss_dssp EE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhC
Confidence 999886432111110 1345677789999999999887777777776655554433
No 84
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.23 E-value=5.2e-11 Score=103.14 Aligned_cols=102 Identities=16% Similarity=0.102 Sum_probs=75.2
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
++.+|||+|||+|..+..++++. .+|+++|+++.+++.+++..... .-++++...|...+- . +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~--~-~~~fD~I~ 99 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKARE-----NLPLRTDAYDINAAA--L-NEDYDFIF 99 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHHh-----CCCceeEeccchhcc--c-cCCCCEEE
Confidence 46899999999999999999863 58999999999999999876543 123677777765432 2 45799999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
+...-...+.. ....+++.+++.|+|||.+++
T Consensus 100 ~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 100 STVVFMFLQAG--RVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred EecccccCCHH--HHHHHHHHHHHHhCCCcEEEE
Confidence 75432211111 125789999999999998544
No 85
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.23 E-value=2e-11 Score=116.43 Aligned_cols=148 Identities=22% Similarity=0.334 Sum_probs=116.6
Q ss_pred hhHHHHHH-hhcccC------CCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCE
Q 037807 52 CAYQEMIT-HLPLCS------IPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRV 124 (299)
Q Consensus 52 ~~Y~e~l~-~~~l~~------~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv 124 (299)
..||.+|. .+++.. +....++|++|.|+|++...+..+.+..++++||+||+|++.|++||... ++.|.
T Consensus 272 s~~h~~m~~g~aL~~n~~~~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~----q~~r~ 347 (482)
T KOG2352|consen 272 SQYHQMMIGGLALIMNRPPQKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFM----QSDRN 347 (482)
T ss_pred cchhhhhhccceeccccCchhccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchh----hhhhh
Confidence 46888774 344432 22357899999999999998877767789999999999999999999876 34589
Q ss_pred EEEEccHHHHHHhc-----CCCCccEEEEcCCCCC-----CCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHH
Q 037807 125 ILHVCDGSEYLKTV-----QSGTFDAIIIDAFDPI-----RPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQ 194 (299)
Q Consensus 125 ~v~~~D~~~~l~~~-----~~~~fDvIi~D~~~~~-----~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~ 194 (299)
++++.||.+|+++. .+..||+|++|...+. .|+....+..++..++..|.|.|++++|.-. .+...-.
T Consensus 348 ~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~--r~~~~~~ 425 (482)
T KOG2352|consen 348 KVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT--RNSSFKD 425 (482)
T ss_pred hhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec--CCcchhH
Confidence 99999999999875 2457999999654432 3456667889999999999999999998632 2344567
Q ss_pred HHHHHHhhhcC
Q 037807 195 HLIDDCHRIFK 205 (299)
Q Consensus 195 ~~~~~l~~~F~ 205 (299)
.+...|+++|+
T Consensus 426 ~~~~~l~~vf~ 436 (482)
T KOG2352|consen 426 EVLMNLAKVFP 436 (482)
T ss_pred HHHHhhhhhhH
Confidence 78889999994
No 86
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.22 E-value=6e-11 Score=106.41 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=77.4
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
++.+|||||||+|.++..+.+.. .+|+++|+++.+++.+++... ...++.+|+.... .++++||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~~~--~~~~~fD~V~ 108 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDA---------ADHYLAGDIESLP--LATATFDLAW 108 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC---------CCCEEEcCcccCc--CCCCcEEEEE
Confidence 46799999999999999887753 689999999999999998753 2457888876532 2357899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+...-.+.+. ...++..+.+.|+|||.+++..
T Consensus 109 s~~~l~~~~d----~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 109 SNLAVQWCGN----LSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred ECchhhhcCC----HHHHHHHHHHHcCCCeEEEEEe
Confidence 8764433222 2678999999999999999854
No 87
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.22 E-value=5.9e-11 Score=107.56 Aligned_cols=105 Identities=26% Similarity=0.312 Sum_probs=80.5
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
++..+|||||||+|..++.+++..+ .+|+++|+++.+++.|++.+.. .++++++.+|+.+.- .++++||+|
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~-~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~~--~~~~~FD~V 121 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYG-AHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKKD--FPENTFDMI 121 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcC-CEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccCC--CCCCCeEEE
Confidence 4567999999999999999887543 5899999999999999987652 358999999976421 235789999
Q ss_pred EE-cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 II-DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~-D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
++ +......... ...+++.+++.|||||.+++..
T Consensus 122 ~s~~~l~h~~~~d---~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 122 YSRDAILHLSYAD---KKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred EEhhhHHhCCHHH---HHHHHHHHHHHcCCCcEEEEEE
Confidence 98 3322211101 2678999999999999999854
No 88
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.20 E-value=5.7e-11 Score=105.15 Aligned_cols=96 Identities=23% Similarity=0.395 Sum_probs=75.4
Q ss_pred CeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCC----CEEEEEccHHHHHHhcCCCCccE
Q 037807 70 KKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDS----RVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~----rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
++|||+|||+|.++..|++.. ++|++||+++++++.|+++ .... ...+. |+++...|+... .++||+
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h-~~~d-P~~~~~~~y~l~~~~~~~E~~-----~~~fDa 161 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEH-KKMD-PVLEGAIAYRLEYEDTDVEGL-----TGKFDA 161 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHh-hhcC-chhccccceeeehhhcchhhc-----ccccce
Confidence 679999999999999999985 7899999999999999998 3321 11122 466677775443 466999
Q ss_pred EEEc-----CCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIID-----AFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D-----~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|++- ..+| .+|.+.+.+.|+|||.+++.+
T Consensus 162 VvcsevleHV~dp---------~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 162 VVCSEVLEHVKDP---------QEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred eeeHHHHHHHhCH---------HHHHHHHHHHhCCCCceEeee
Confidence 9982 2334 889999999999999999855
No 89
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.19 E-value=1.5e-10 Score=105.20 Aligned_cols=106 Identities=17% Similarity=0.242 Sum_probs=80.6
Q ss_pred CCCCeEEEEeccccHHHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGDGGILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
+...+|||||||+|..+..+++. ....+|++||+++.+++.|+++.... .-++++++.+|+.+.- .+++.||+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~----g~~~v~~~~~d~~~l~--~~~~~fD~ 149 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA----GYTNVEFRLGEIEALP--VADNSVDV 149 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc----CCCCEEEEEcchhhCC--CCCCceeE
Confidence 35689999999999988877764 33357999999999999999986543 2358899999976532 12568999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
|+++..-...+. ....++.+.+.|+|||.+++.
T Consensus 150 Vi~~~v~~~~~d----~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 150 IISNCVINLSPD----KERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEEcCcccCCCC----HHHHHHHHHHHcCCCcEEEEE
Confidence 998754322111 167899999999999999884
No 90
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.18 E-value=4.4e-10 Score=99.34 Aligned_cols=112 Identities=25% Similarity=0.312 Sum_probs=96.6
Q ss_pred CeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCC-CccEEEE
Q 037807 70 KKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSG-TFDAIII 148 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~-~fDvIi~ 148 (299)
.-+|+||||.|....++++..+...+.+||+-..++..|.+..... +-+++.++..||.+++....++ +.|-|.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~----~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKEL----GLKNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHc----CCCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 5799999999999999998767789999999999999888877654 2239999999999999877444 9999999
Q ss_pred cCCCCCCC----CCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 149 DAFDPIRP----GHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 149 D~~~~~~~----~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
..+||+.- ...|.+.+|++.+.+.|+|||.|-+.+..
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 99999843 35789999999999999999999987644
No 91
>PRK14968 putative methyltransferase; Provisional
Probab=99.17 E-value=3.7e-10 Score=96.22 Aligned_cols=112 Identities=18% Similarity=0.229 Sum_probs=82.8
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.+.++||++|||+|.++..+++.. .+|+++|+++++++.+++++...+ ..+.++.++.+|..+.+. .++||+|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~~~---~~~~d~v 94 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNN--IRNNGVEVIRSDLFEPFR---GDKFDVI 94 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcC--CCCcceEEEecccccccc---ccCceEE
Confidence 356789999999999999999873 689999999999999999876542 122238899999866543 3489999
Q ss_pred EEcCCCCCCCCC-----------------CCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 147 IIDAFDPIRPGH-----------------DLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 147 i~D~~~~~~~~~-----------------~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
+++.+.....+. ......+++.+.+.|+|||.+++...+
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 987643211000 001256899999999999988876543
No 92
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.17 E-value=1.6e-10 Score=101.18 Aligned_cols=112 Identities=26% Similarity=0.318 Sum_probs=82.7
Q ss_pred hHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcC-CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccH
Q 037807 53 AYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHA-SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDG 131 (299)
Q Consensus 53 ~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~ 131 (299)
.+..|+.++. ..+..+||+||+|+|..+..+++.- ...+|++||+++.+++.|++++... .-.+++++.+|+
T Consensus 60 ~~a~~l~~L~---l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~----~~~nv~~~~gdg 132 (209)
T PF01135_consen 60 MVARMLEALD---LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL----GIDNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHTT---C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH----TTHSEEEEES-G
T ss_pred HHHHHHHHHh---cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh----ccCceeEEEcch
Confidence 4556666554 3467899999999999999888753 3457999999999999999999876 235899999999
Q ss_pred HHHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 132 SEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 132 ~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
..-... ...||.|++...-+.- -..+.+.|++||++++-.
T Consensus 133 ~~g~~~--~apfD~I~v~~a~~~i----------p~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 133 SEGWPE--EAPFDRIIVTAAVPEI----------PEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGTTGG--G-SEEEEEESSBBSS------------HHHHHTEEEEEEEEEEE
T ss_pred hhcccc--CCCcCEEEEeeccchH----------HHHHHHhcCCCcEEEEEE
Confidence 876654 4689999998655422 235667899999999843
No 93
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.17 E-value=2.7e-10 Score=100.47 Aligned_cols=102 Identities=25% Similarity=0.300 Sum_probs=82.9
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCc------cEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCC
Q 037807 68 NPKKVLLIGGGDGGILREISRHASV------EQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSG 141 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~------~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~ 141 (299)
+..++||++||+|-++..++++-.. .+|+++||+|.|++.+++....- .-..++++.++.+|+.+.-- ++.
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~l~~~~~~~w~~~dAE~LpF--dd~ 176 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-PLKASSRVEWVEGDAEDLPF--DDD 176 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-CCCcCCceEEEeCCcccCCC--CCC
Confidence 4579999999999999999987655 79999999999999999876331 11246689999999987642 478
Q ss_pred CccEEEEc-----CCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 142 TFDAIIID-----AFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 142 ~fDvIi~D-----~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
.||...+. .+++ ...+++++|+|||||+|.+
T Consensus 177 s~D~yTiafGIRN~th~---------~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTHI---------QKALREAYRVLKPGGRFSC 212 (296)
T ss_pred cceeEEEecceecCCCH---------HHHHHHHHHhcCCCcEEEE
Confidence 99998873 3443 6789999999999999885
No 94
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2.3e-10 Score=104.35 Aligned_cols=119 Identities=17% Similarity=0.227 Sum_probs=84.6
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
++++|||+|||+|.++...++. +.++|.++|+||..++.|+++...++.. +.++.-..+...... .++||+|+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~---~~~~~~~~~~~~~~~---~~~~DvIV 234 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVE---LLVQAKGFLLLEVPE---NGPFDVIV 234 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCc---hhhhcccccchhhcc---cCcccEEE
Confidence 6899999999999999999888 5788999999999999999998776321 122233333333322 46999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHH-hhhc
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDC-HRIF 204 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l-~~~F 204 (299)
.+.-... -..+...+++.|+|||.+++.. ....+ ...+...+ ++-|
T Consensus 235 ANILA~v-------l~~La~~~~~~lkpgg~lIlSG---Il~~q-~~~V~~a~~~~gf 281 (300)
T COG2264 235 ANILAEV-------LVELAPDIKRLLKPGGRLILSG---ILEDQ-AESVAEAYEQAGF 281 (300)
T ss_pred ehhhHHH-------HHHHHHHHHHHcCCCceEEEEe---ehHhH-HHHHHHHHHhCCC
Confidence 8863221 1578889999999999999843 33322 44455555 3345
No 95
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.15 E-value=4.5e-10 Score=98.38 Aligned_cols=122 Identities=16% Similarity=0.244 Sum_probs=85.6
Q ss_pred CCCCeEEEEeccccHHHHHHHhcC-CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHH------HhcC
Q 037807 67 PNPKKVLLIGGGDGGILREISRHA-SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYL------KTVQ 139 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l------~~~~ 139 (299)
++..+|||||||+|..+..+++.. +...|++||+++. . ..++++++++|+.+.- ....
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~------~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------D------PIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------c------CCCCcEEEecCCCChHHHHHHHHHhC
Confidence 456789999999999999998863 3358999999981 1 1256899999987631 1223
Q ss_pred CCCccEEEEcCCCCC-CCCC-C-C----CcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCCce
Q 037807 140 SGTFDAIIIDAFDPI-RPGH-D-L----FEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKGSA 208 (299)
Q Consensus 140 ~~~fDvIi~D~~~~~-~~~~-~-l----~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~~v 208 (299)
.+.||+|++|..... +.+. . . ....+++.+.+.|+|||.|++.. ...+.+.+++..+++.| ..+
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~----~~~~~~~~~l~~l~~~f-~~v 185 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV----FQGEGFDEYLREIRSLF-TKV 185 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE----ecCcCHHHHHHHHHhCc-eEE
Confidence 578999999864322 1110 0 0 01467899999999999999832 33355677788888888 344
No 96
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.15 E-value=5.1e-10 Score=104.61 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=78.6
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
...+|||||||+|..+..+++..+..+|+++|+++++++.|++... ..+++++.+|+.+.-. +++.||+|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~lp~--~~~sFDvVI 183 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAEDLPF--PTDYADRYV 183 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHhCCC--CCCceeEEE
Confidence 4579999999999999988876444689999999999999998753 2468899999876321 257899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+...-...+. ....++++++.|+|||.+++.
T Consensus 184 s~~~L~~~~d----~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 184 SAGSIEYWPD----PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred EcChhhhCCC----HHHHHHHHHHhcCCCcEEEEE
Confidence 8532221111 156899999999999998763
No 97
>PHA03411 putative methyltransferase; Provisional
Probab=99.15 E-value=4.2e-10 Score=101.55 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=83.1
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
...+|||+|||+|.++..++++.+..+|++||+|+.+++.+++.+ ++++++.+|++++.. .++||+|+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~~---~~kFDlII 131 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFES---NEKFDVVI 131 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhcc---cCCCcEEE
Confidence 357899999999999998887644468999999999999999864 368899999998763 46899999
Q ss_pred EcCCCCCCCC---CC--CC-----------cHHHHHHHHHhcCCCcEEEE-ecCCcccch
Q 037807 148 IDAFDPIRPG---HD--LF-----------EGPFFELVAKALRPGGAMCI-QAESLWFQQ 190 (299)
Q Consensus 148 ~D~~~~~~~~---~~--l~-----------t~ef~~~~~~~LkpgGvlv~-~~~s~~~~~ 190 (299)
++++-..... .. -+ -..+++.+...|+|+|.+.+ .++.++++.
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~ 191 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDG 191 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccc
Confidence 9876532111 11 11 25788888999999996544 344455543
No 98
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.14 E-value=1.9e-10 Score=105.44 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=77.7
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
++.+|||||||+|..+..+++.. .+|+++|+|+.+++.+++..... ..++++...|+.... . +++||+|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~~~-----~l~v~~~~~D~~~~~--~-~~~fD~I~ 189 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAEKE-----NLNIRTGLYDINSAS--I-QEEYDFIL 189 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHc-----CCceEEEEechhccc--c-cCCccEEE
Confidence 46799999999999999998863 58999999999999999887543 236888888876542 2 57899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
+...-...... ....+++.+.+.|+|||.+++
T Consensus 190 ~~~vl~~l~~~--~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 190 STVVLMFLNRE--RIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred EcchhhhCCHH--HHHHHHHHHHHhcCCCcEEEE
Confidence 86432211111 126789999999999998554
No 99
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.14 E-value=9.9e-11 Score=100.16 Aligned_cols=125 Identities=15% Similarity=0.256 Sum_probs=85.6
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+.-.++|++|||.|.++..|+.+ ..+++++|+++..++.||+.+.. .++|+++..|..++. +.++||+|
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~~~---P~~~FDLI 110 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAG------LPHVEWIQADVPEFW---PEGRFDLI 110 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT------SS-EEEE
T ss_pred cccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCCCC---CCCCeeEE
Confidence 34578999999999999999987 47899999999999999999874 478999999987765 37899999
Q ss_pred EEcCCCC-CCCCCCCCcHHHHHHHHHhcCCCcEEEEec-----CCcccchHHHHHHHHHHhhhc
Q 037807 147 IIDAFDP-IRPGHDLFEGPFFELVAKALRPGGAMCIQA-----ESLWFQQFSVQHLIDDCHRIF 204 (299)
Q Consensus 147 i~D~~~~-~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~-----~s~~~~~~~~~~~~~~l~~~F 204 (299)
++.---- ..+... -..+.+.+.+.|+|||.+++-+ ...|.+......+...+.+.|
T Consensus 111 V~SEVlYYL~~~~~--L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~ 172 (201)
T PF05401_consen 111 VLSEVLYYLDDAED--LRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHL 172 (201)
T ss_dssp EEES-GGGSSSHHH--HHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHS
T ss_pred EEehHhHcCCCHHH--HHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHh
Confidence 9852111 010000 1347788899999999999843 123444445667777777777
No 100
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.14 E-value=2.7e-10 Score=111.42 Aligned_cols=105 Identities=21% Similarity=0.190 Sum_probs=80.9
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.+..+|||||||+|..+..++++.+ .+|+++|+++.+++.|+++.... ..+++++.+|+.... .++++||+|
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvDiS~~~l~~A~~~~~~~-----~~~v~~~~~d~~~~~--~~~~~fD~I 336 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFD-VHVVGIDLSVNMISFALERAIGR-----KCSVEFEVADCTKKT--YPDNSFDVI 336 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhhcC-----CCceEEEEcCcccCC--CCCCCEEEE
Confidence 4567999999999999999988653 58999999999999999875422 357999999976532 125689999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
++...-...+. ...+++.+++.|+|||.+++..
T Consensus 337 ~s~~~l~h~~d----~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 337 YSRDTILHIQD----KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred EECCcccccCC----HHHHHHHHHHHcCCCeEEEEEE
Confidence 98432211111 2689999999999999998864
No 101
>PLN02672 methionine S-methyltransferase
Probab=99.13 E-value=9.8e-10 Score=115.21 Aligned_cols=152 Identities=16% Similarity=0.058 Sum_probs=101.9
Q ss_pred cCCceEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhh
Q 037807 32 SSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEY 111 (299)
Q Consensus 32 ~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~ 111 (299)
.++|..+.++..+-..+.+....-|.+...+-. ..++.+|||||||+|.++..+++..+..+|+++|+|+++++.|+++
T Consensus 83 ~F~~l~~~V~p~VLIPRpeTE~lve~L~~~~~~-~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~N 161 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIPEDWSFTFYEGLNRHPDS-IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWIN 161 (1082)
T ss_pred EecCCceeeCCCcccCchhHHHHHHHHHhcccc-cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 345667777766666666633333333221100 0124689999999999999998865557899999999999999999
Q ss_pred chhhhcC------------CCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCC--------------C---------C
Q 037807 112 FPEIAIG------------YEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPI--------------R---------P 156 (299)
Q Consensus 112 ~~~~~~~------------~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~--------------~---------~ 156 (299)
...+... ....|++++.+|..+.+... ..+||+||++++.-. . +
T Consensus 162 a~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p 240 (1082)
T PLN02672 162 LYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN 240 (1082)
T ss_pred HHHcCcccccccccccccccccccEEEEECchhhhcccc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence 8654210 01247999999998877432 247999999876311 0 1
Q ss_pred CCCCCc-----------HHHHHHHHHhcCCCcEEEEecCC
Q 037807 157 GHDLFE-----------GPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 157 ~~~l~t-----------~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
...|+. +.+...+.+.|+|||.+++..+.
T Consensus 241 ~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~ 280 (1082)
T PLN02672 241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGG 280 (1082)
T ss_pred cccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 122322 44556667799999999998753
No 102
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.13 E-value=4.2e-10 Score=98.52 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=77.3
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.+..+||+||||+|..+..+++.. .+|++||+++++++.+++++... .-.+++++.+|+.+.+.. .++||+|
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~~--~~~fD~I 148 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQL----GLHNVSVRHGDGWKGWPA--YAPFDRI 148 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHC----CCCceEEEECCcccCCCc--CCCcCEE
Confidence 456899999999999998777763 47999999999999999988754 224599999998654331 4689999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+++...+ .+.+.+.+.|+|||++++..
T Consensus 149 ~~~~~~~----------~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 149 LVTAAAP----------EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred EEccCch----------hhhHHHHHhcCCCcEEEEEE
Confidence 9986432 23456788999999999854
No 103
>PRK06922 hypothetical protein; Provisional
Probab=99.12 E-value=4.6e-10 Score=111.59 Aligned_cols=112 Identities=15% Similarity=0.171 Sum_probs=83.3
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
++.+|||||||+|..+..+++..+..+|+++|+++.|++.|++..... ..+++++.+|+.++....++++||+|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-----g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-----GRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-----CCCeEEEEcchHhCccccCCCCEEEEE
Confidence 468999999999999998887555679999999999999999876432 357889999987743212357899999
Q ss_pred EcCCCCCC----C-CC----CCCcHHHHHHHHHhcCCCcEEEEecC
Q 037807 148 IDAFDPIR----P-GH----DLFEGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 148 ~D~~~~~~----~-~~----~l~t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
+...-+.- + .. .-....+++.+.++|||||.+++..+
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 76432110 0 00 01226789999999999999998653
No 104
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.11 E-value=2.7e-10 Score=104.50 Aligned_cols=135 Identities=17% Similarity=0.272 Sum_probs=90.1
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.+.++|||+|||+|.++...++. +..+|+++|+||..++.|+++...++. .+ ++.+. ... +....+||+|
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~--~~-~~~v~--~~~----~~~~~~~dlv 229 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGV--ED-RIEVS--LSE----DLVEGKFDLV 229 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT---TT-CEEES--CTS----CTCCS-EEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCC--Ce-eEEEE--Eec----ccccccCCEE
Confidence 35679999999999999999887 578999999999999999999887632 23 66553 111 1124789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCCceeeeEEeecccCCcceeEE
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFM 226 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~w~~~ 226 (299)
+.+..... -......+.+.|+|||.+++. -.... ....+.+.+++-| ... ..- ..+.|..+
T Consensus 230 vANI~~~v-------L~~l~~~~~~~l~~~G~lIlS---GIl~~-~~~~v~~a~~~g~-~~~-----~~~--~~~~W~~l 290 (295)
T PF06325_consen 230 VANILADV-------LLELAPDIASLLKPGGYLILS---GILEE-QEDEVIEAYKQGF-ELV-----EER--EEGEWVAL 290 (295)
T ss_dssp EEES-HHH-------HHHHHHHCHHHEEEEEEEEEE---EEEGG-GHHHHHHHHHTTE-EEE-----EEE--EETTEEEE
T ss_pred EECCCHHH-------HHHHHHHHHHhhCCCCEEEEc---cccHH-HHHHHHHHHHCCC-EEE-----EEE--EECCEEEE
Confidence 99875431 145667778999999999984 33332 2345555665444 111 111 12678777
Q ss_pred eccc
Q 037807 227 LCST 230 (299)
Q Consensus 227 ~ask 230 (299)
++-|
T Consensus 291 ~~~K 294 (295)
T PF06325_consen 291 VFKK 294 (295)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6654
No 105
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.11 E-value=1.3e-09 Score=94.04 Aligned_cols=107 Identities=14% Similarity=0.043 Sum_probs=83.1
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcC--CCCccE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQ--SGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~--~~~fDv 145 (299)
+..+|||++||+|.++.+++.+. ..+|++||+|+..++.+++++...+. ..+++++.+|+.+++.... ...||+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~---~~~~~~~~~D~~~~l~~~~~~~~~~dv 124 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKS---GEQAEVVRNSALRALKFLAKKPTFDNV 124 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCC---cccEEEEehhHHHHHHHhhccCCCceE
Confidence 46789999999999999999884 56899999999999999999876521 2479999999998876431 234899
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHH--hcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAK--ALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~--~LkpgGvlv~~~ 183 (299)
|+.|++.... +..+.++.+.+ .|+++|++++..
T Consensus 125 v~~DPPy~~~-----~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 125 IYLDPPFFNG-----ALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEECcCCCCC-----cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 9999876421 12455565544 689999999864
No 106
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.11 E-value=8.3e-10 Score=102.27 Aligned_cols=102 Identities=14% Similarity=0.207 Sum_probs=75.0
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHH---hhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCcc
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYK---EYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~---~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fD 144 (299)
+.++|||||||+|..+..+++.. ...|++||+++.++..++ +... .+.++.+...|..+.-. ...||
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~------~~~~v~~~~~~ie~lp~---~~~FD 190 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLD------NDKRAILEPLGIEQLHE---LYAFD 190 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhc------cCCCeEEEECCHHHCCC---CCCcC
Confidence 46899999999999998888764 458999999999987543 2222 24678888888765422 35899
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+|++...-...+. -.++++.+++.|+|||.|++..
T Consensus 191 ~V~s~gvL~H~~d----p~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 191 TVFSMGVLYHRKS----PLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEEcchhhccCC----HHHHHHHHHHhcCCCCEEEEEE
Confidence 9998542211111 1679999999999999999864
No 107
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.11 E-value=8.5e-10 Score=102.80 Aligned_cols=115 Identities=15% Similarity=0.221 Sum_probs=80.0
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHH
Q 037807 54 YQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSE 133 (299)
Q Consensus 54 Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~ 133 (299)
|...+.+++.. ..++|||||||+|..+..+++.. ...|++||+++.++..++..-.... .+++++++.+|+.+
T Consensus 111 ~~~l~~~l~~l---~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~---~~~~i~~~~~d~e~ 183 (322)
T PRK15068 111 WDRVLPHLSPL---KGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLG---NDQRAHLLPLGIEQ 183 (322)
T ss_pred HHHHHHhhCCC---CCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEeCCHHH
Confidence 44444444322 46899999999999999998874 4579999999998865433211110 24689999999866
Q ss_pred HHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 134 YLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 134 ~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
.-. .++||+|++-..-..... ...+++.+++.|+|||.+++.
T Consensus 184 lp~---~~~FD~V~s~~vl~H~~d----p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 184 LPA---LKAFDTVFSMGVLYHRRS----PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred CCC---cCCcCEEEECChhhccCC----HHHHHHHHHHhcCCCcEEEEE
Confidence 522 578999998422111111 167899999999999999875
No 108
>PRK08317 hypothetical protein; Provisional
Probab=99.11 E-value=7.6e-10 Score=97.41 Aligned_cols=106 Identities=22% Similarity=0.271 Sum_probs=81.0
Q ss_pred CCCCeEEEEeccccHHHHHHHhcC-CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHA-SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
....+|||+|||+|..+..++++. +..+++++|+++.+++.+++.... ..++++++.+|...... ..++||+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~~--~~~~~D~ 90 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-----LGPNVEFVRGDADGLPF--PDGSFDA 90 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-----CCCceEEEecccccCCC--CCCCceE
Confidence 456899999999999999998754 457899999999999999987322 24678999999765422 2578999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|++...-..... ...+++.+.+.|+|||.+++..
T Consensus 91 v~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 91 VRSDRVLQHLED----PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred EEEechhhccCC----HHHHHHHHHHHhcCCcEEEEEe
Confidence 998543211111 2678999999999999988754
No 109
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=1.3e-09 Score=105.94 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=86.6
Q ss_pred CCCCeEEEEeccccHHHHHHHhcC-CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHA-SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.+..+|||+|||+|+.+..++++- +..+|+++|+++.+++.+++++...+ -.+++++.+|+.++.... .++||+
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~~~-~~~fD~ 323 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG----LTNIETKALDARKVHEKF-AEKFDK 323 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCCcccccchh-cccCCE
Confidence 456789999999999999998753 34689999999999999999987652 235999999998765433 368999
Q ss_pred EEEcCCCCC-C-----CCCCC------------CcHHHHHHHHHhcCCCcEEEEecCCc
Q 037807 146 IIIDAFDPI-R-----PGHDL------------FEGPFFELVAKALRPGGAMCIQAESL 186 (299)
Q Consensus 146 Ii~D~~~~~-~-----~~~~l------------~t~ef~~~~~~~LkpgGvlv~~~~s~ 186 (299)
|++|++... + |.... ...++++.+.+.|+|||.++..+.+.
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 999986321 1 11000 12468899999999999999765443
No 110
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.10 E-value=7.5e-10 Score=93.60 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=77.1
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+..+|||||||+|.++.+++++ ..+|++||+|+.+++.+++++.. .++++++.+|+.++... +..||.|+
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~~~~--~~~~d~vi 82 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDLP--KLQPYKVV 82 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcCCcc--ccCCCEEE
Confidence 4568999999999999999987 36899999999999999998753 36899999999887432 34699999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHh--cCCCcEEEEec
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKA--LRPGGAMCIQA 183 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~--LkpgGvlv~~~ 183 (299)
.+++... +.+.+..+.+. +.++|++++|.
T Consensus 83 ~n~Py~~-------~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 83 GNLPYNI-------STPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred ECCCccc-------HHHHHHHHHhcCCCcceEEEEEEH
Confidence 9876542 23445555443 45889999875
No 111
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.09 E-value=6.9e-10 Score=97.97 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=81.3
Q ss_pred CCCeEEEEeccccHHHHHHHhcCC-ccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHAS-VEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+..+||+||||+|..+..+++..+ ..+++++|+++.+++.+++++.... ...+++++.+|..+... ..+.||+|
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~--~~~~~D~I 125 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG---LSGNVEFVQGDAEALPF--PDNSFDAV 125 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc---cccCeEEEecccccCCC--CCCCccEE
Confidence 457999999999999999987643 5789999999999999999875421 13578999999876532 25789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
++...-..... ...+++.+.+.|+|||.+++.
T Consensus 126 ~~~~~l~~~~~----~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 126 TIAFGLRNVPD----IDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred EEecccccCCC----HHHHHHHHHHhccCCcEEEEE
Confidence 97533221111 278899999999999988763
No 112
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.09 E-value=6.1e-10 Score=106.06 Aligned_cols=101 Identities=25% Similarity=0.377 Sum_probs=78.3
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
++..+|||||||+|.++..++++.+ .+|+++|+|+++++.|++.... .++++..+|..+. +++||+|
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~~-------l~v~~~~~D~~~l-----~~~fD~I 232 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCAG-------LPVEIRLQDYRDL-----NGQFDRI 232 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcc-------CeEEEEECchhhc-----CCCCCEE
Confidence 3567999999999999999998654 4899999999999999987642 3588888886543 4689999
Q ss_pred EEcC-CCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDA-FDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~-~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
++-. ....+.. .-..+++.+.+.|||||.++++.
T Consensus 233 vs~~~~ehvg~~---~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 233 VSVGMFEHVGPK---NYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEeCchhhCChH---HHHHHHHHHHHHcCCCcEEEEEE
Confidence 8642 2222111 12578999999999999999865
No 113
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.09 E-value=1.6e-09 Score=104.66 Aligned_cols=116 Identities=20% Similarity=0.250 Sum_probs=86.3
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.+..+|||+|||+|+.+.++++..+..+|+++|+++.+++.+++++... ..+++++.+|+.+.......++||.|
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-----g~~~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-----GLKATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCeEEEEcCcccchhhcccCCCCEE
Confidence 3567999999999999999988643368999999999999999998764 22478999999764321124679999
Q ss_pred EEcCCCCC-CC----CCCCC-------------cHHHHHHHHHhcCCCcEEEEecCCcc
Q 037807 147 IIDAFDPI-RP----GHDLF-------------EGPFFELVAKALRPGGAMCIQAESLW 187 (299)
Q Consensus 147 i~D~~~~~-~~----~~~l~-------------t~ef~~~~~~~LkpgGvlv~~~~s~~ 187 (299)
++|++... +. +...+ ..++++.+.+.|+|||.++..+.+.+
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 99986532 11 11111 13688899999999999998765443
No 114
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.09 E-value=3.2e-10 Score=97.29 Aligned_cols=110 Identities=18% Similarity=0.302 Sum_probs=82.8
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc--CCCCccE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV--QSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~~fDv 145 (299)
...+|||+-+|+|.++.|.+.+ +.++|+.||.|+..++..++++...+. ..+.+++..|+..++.+. ...+||+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~~---~~~~~v~~~d~~~~l~~~~~~~~~fDi 117 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLGL---EDKIRVIKGDAFKFLLKLAKKGEKFDI 117 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT----GGGEEEEESSHHHHHHHHHHCTS-EEE
T ss_pred CCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhCC---CcceeeeccCHHHHHHhhcccCCCceE
Confidence 5789999999999999999988 478999999999999999999887632 237999999999888654 4689999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHH--HhcCCCcEEEEecCC
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVA--KALRPGGAMCIQAES 185 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~--~~LkpgGvlv~~~~s 185 (299)
|++|+|..... +..+.++.+. ..|+++|++++...+
T Consensus 118 IflDPPY~~~~----~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 118 IFLDPPYAKGL----YYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp EEE--STTSCH----HHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred EEECCCcccch----HHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 99998765321 1255666665 689999999997633
No 115
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.09 E-value=1.8e-09 Score=100.31 Aligned_cols=101 Identities=21% Similarity=0.213 Sum_probs=78.6
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCC-ccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHAS-VEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
++..+|||||||+|..+..+++..+ ...|++||+++++++.|++++... ...+++++.+|+.+.+.. .+.||+
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~----g~~nV~~i~gD~~~~~~~--~~~fD~ 152 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL----GIENVIFVCGDGYYGVPE--FAPYDV 152 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc----CCCcEEEEeCChhhcccc--cCCccE
Confidence 3567999999999999999987543 246999999999999999987654 235799999998876543 357999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+++...+ +....+.+.|+|||.+++..
T Consensus 153 Ii~~~g~~----------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 153 IFVTVGVD----------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEECCchH----------HhHHHHHHhcCCCCEEEEEe
Confidence 99874322 23345678999999988754
No 116
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.09 E-value=1e-09 Score=102.63 Aligned_cols=109 Identities=18% Similarity=0.150 Sum_probs=83.4
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
++..+|||+|||+|+++.+++... .+++++|+|+.+++.+++++...+ .+.++++.+|+.+.-. ..++||+|
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~--~~v~g~Di~~~~~~~a~~nl~~~g----~~~i~~~~~D~~~l~~--~~~~~D~I 252 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMG--AKVIGCDIDWKMVAGARINLEHYG----IEDFFVKRGDATKLPL--SSESVDAI 252 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhC--CeEEEEcCCHHHHHHHHHHHHHhC----CCCCeEEecchhcCCc--ccCCCCEE
Confidence 456789999999999999977653 689999999999999999887542 2348899999877422 25789999
Q ss_pred EEcCCCCCCCC--CCC---CcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPG--HDL---FEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~--~~l---~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
++|++...... ... ...++++.+.+.|+|||.+++-.
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 99987543211 111 13678999999999999988754
No 117
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.09 E-value=1.4e-09 Score=93.46 Aligned_cols=119 Identities=18% Similarity=0.287 Sum_probs=81.1
Q ss_pred CCCCeEEEEeccccHHHHHHHhcC-CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHH-----HH-hcC
Q 037807 67 PNPKKVLLIGGGDGGILREISRHA-SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEY-----LK-TVQ 139 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~-----l~-~~~ 139 (299)
++..+|||||||+|+++..+++.. +..+|+++|+++.+ . .++++++.+|..+. +. ..+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-------~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-------IENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-------CCCceEEEeeCCChhHHHHHHHHhC
Confidence 456899999999999999887643 44689999999864 1 14577888886542 11 123
Q ss_pred CCCccEEEEcCCCCC-CCC--CCCC----cHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhc
Q 037807 140 SGTFDAIIIDAFDPI-RPG--HDLF----EGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIF 204 (299)
Q Consensus 140 ~~~fDvIi~D~~~~~-~~~--~~l~----t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F 204 (299)
.++||+|++|...+. +.. ..+. ...+++.+.+.|+|||.+++.. .....+..++..++..|
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~----~~~~~~~~~l~~l~~~~ 163 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV----FQGEEIDEYLNELRKLF 163 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE----ccCccHHHHHHHHHhhh
Confidence 568999999864321 110 0000 1568999999999999999853 22334556777777777
No 118
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.09 E-value=8.3e-10 Score=92.82 Aligned_cols=111 Identities=22% Similarity=0.377 Sum_probs=77.4
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+..+|||||||+|.+++.|++..-....++||.+++.+++|+...... .+ +..+++.+.|..+- .. ..++||+|.
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~--~~-~n~I~f~q~DI~~~-~~-~~~qfdlvl 141 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD--GF-SNEIRFQQLDITDP-DF-LSGQFDLVL 141 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc--CC-CcceeEEEeeccCC-cc-cccceeEEe
Confidence 455999999999999999998533345999999999999988654432 22 23488988887653 11 156788887
Q ss_pred E----cCC--CCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 148 I----DAF--DPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 148 ~----D~~--~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
- |+- .|.++..++ .-++..+.+.|+|||+|++.+.+
T Consensus 142 DKGT~DAisLs~d~~~~r~--~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 142 DKGTLDAISLSPDGPVGRL--VVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred ecCceeeeecCCCCcccce--eeehhhHhhccCCCcEEEEEecC
Confidence 4 221 122333332 34577888999999999997644
No 119
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.08 E-value=1.3e-09 Score=81.80 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=79.7
Q ss_pred eEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcC
Q 037807 71 KVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDA 150 (299)
Q Consensus 71 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~ 150 (299)
+||++|||.|..+..+++. ...+++++|+++..++.+++..... ...+++++.+|..++... ...+||+|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASG-PGARVTGVDISPVALELARKAAAAL----LADNVEVLKGDAEELPPE-ADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHhcc----cccceEEEEcChhhhccc-cCCceEEEEEcc
Confidence 4899999999999999883 4679999999999999998532211 346899999999887642 257899999976
Q ss_pred CCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 151 FDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 151 ~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
..... .-....+++.+.+.|++||.+++.
T Consensus 75 ~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 54321 112377899999999999999874
No 120
>PHA03412 putative methyltransferase; Provisional
Probab=99.07 E-value=7.9e-10 Score=97.69 Aligned_cols=101 Identities=18% Similarity=0.131 Sum_probs=74.2
Q ss_pred CCCeEEEEeccccHHHHHHHhc---CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCcc
Q 037807 68 NPKKVLLIGGGDGGILREISRH---ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fD 144 (299)
...+|||+|||+|.++..+++. ....+|++||+|+.+++.|+++. +++.++.+|+..+.. .++||
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------~~~~~~~~D~~~~~~---~~~FD 116 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------PEATWINADALTTEF---DTLFD 116 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------cCCEEEEcchhcccc---cCCcc
Confidence 3679999999999999998864 12458999999999999999864 357899999876432 46899
Q ss_pred EEEEcCCCCCCC-C-------CCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 145 AIIIDAFDPIRP-G-------HDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 145 vIi~D~~~~~~~-~-------~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
+||++++..... . ..+....+++.+.+.+++ |.+++
T Consensus 117 lIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~-G~~IL 160 (241)
T PHA03412 117 MAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQ-GTFII 160 (241)
T ss_pred EEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCC-CEEEe
Confidence 999998764211 1 113345678888875555 55565
No 121
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.07 E-value=1e-09 Score=95.80 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=81.3
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCc-cEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASV-EQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.++.+||++|||+|..+..+++..+. .+++++|+++.+++.+++++. . ..+++++.+|+.+... ..++||+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-----~~~i~~~~~d~~~~~~--~~~~~D~ 109 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-----PLNIEFIQADAEALPF--EDNSFDA 109 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-----CCCceEEecchhcCCC--CCCcEEE
Confidence 35789999999999999999876443 589999999999999998875 1 4578999999877542 2468999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|++........ ....+++.+.+.|+|||.+++..
T Consensus 110 i~~~~~~~~~~----~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 110 VTIAFGLRNVT----DIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EEEeeeeCCcc----cHHHHHHHHHHHcCCCcEEEEEE
Confidence 99753221111 12678999999999999988743
No 122
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.06 E-value=2.1e-09 Score=96.17 Aligned_cols=120 Identities=23% Similarity=0.380 Sum_probs=90.9
Q ss_pred CCCCCeEEEEeccccHHHHHHHh-cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHH--HHHhcCCCC
Q 037807 66 IPNPKKVLLIGGGDGGILREISR-HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSE--YLKTVQSGT 142 (299)
Q Consensus 66 ~~~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~--~l~~~~~~~ 142 (299)
..+..+||+.|.|+|.++..+++ -.+..+|...|+.++..+.|+++|...+. ..++++.+.|..+ |.... +..
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl---~~~v~~~~~Dv~~~g~~~~~-~~~ 113 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL---DDNVTVHHRDVCEEGFDEEL-ESD 113 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC---CTTEEEEES-GGCG--STT--TTS
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC---CCCceeEecceecccccccc-cCc
Confidence 35678999999999999999997 33457899999999999999999987632 4589999999853 32222 478
Q ss_pred ccEEEEcCCCCCCCCCCCCcHHHHHHHHHhc-CCCcEEEEecCCcccchHHHHHHHHHHhh
Q 037807 143 FDAIIIDAFDPIRPGHDLFEGPFFELVAKAL-RPGGAMCIQAESLWFQQFSVQHLIDDCHR 202 (299)
Q Consensus 143 fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~L-kpgGvlv~~~~s~~~~~~~~~~~~~~l~~ 202 (299)
+|.|++|.++| .+.+..+.++| ++||.+++-+.+ .+...++...|++
T Consensus 114 ~DavfLDlp~P---------w~~i~~~~~~L~~~gG~i~~fsP~----ieQv~~~~~~L~~ 161 (247)
T PF08704_consen 114 FDAVFLDLPDP---------WEAIPHAKRALKKPGGRICCFSPC----IEQVQKTVEALRE 161 (247)
T ss_dssp EEEEEEESSSG---------GGGHHHHHHHE-EEEEEEEEEESS----HHHHHHHHHHHHH
T ss_pred ccEEEEeCCCH---------HHHHHHHHHHHhcCCceEEEECCC----HHHHHHHHHHHHH
Confidence 99999999999 55788999999 899999986533 3446667777766
No 123
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.06 E-value=5.6e-10 Score=95.60 Aligned_cols=98 Identities=20% Similarity=0.364 Sum_probs=78.6
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEE-EEEccHHHHHHhcCCCCccEEE
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVI-LHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~-v~~~D~~~~l~~~~~~~fDvIi 147 (299)
...||++|||+|..-...--. ++.+||++|.++.|-+.+.+.+.+. ..+++. ++++|+.+..+ .++.+||+|+
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~----k~~~~~~fvva~ge~l~~-l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEK----KPLQVERFVVADGENLPQ-LADGSYDTVV 150 (252)
T ss_pred ccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhc----cCcceEEEEeechhcCcc-cccCCeeeEE
Confidence 457899999999887654322 5689999999999999999988765 356777 99999988653 3478999999
Q ss_pred EcC-----CCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 148 IDA-----FDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 148 ~D~-----~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
+.. .+| .+.++++.+.|+|||++++
T Consensus 151 ~TlvLCSve~~---------~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 151 CTLVLCSVEDP---------VKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred EEEEEeccCCH---------HHHHHHHHHhcCCCcEEEE
Confidence 743 333 7789999999999999886
No 124
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.05 E-value=4.6e-09 Score=95.21 Aligned_cols=113 Identities=22% Similarity=0.243 Sum_probs=85.4
Q ss_pred CCCCeEEEEeccccHHHHHHHhcC-CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHA-SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.+..+|||+|||.|+.+..+++.- +...|+++|+++.+++.+++++...+ -.+++++..|+..+... .+.||+
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~~--~~~fD~ 143 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG----VLNVAVTNFDGRVFGAA--VPKFDA 143 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC----CCcEEEecCCHHHhhhh--ccCCCE
Confidence 345789999999999999987643 23589999999999999999987652 24699999999876442 356999
Q ss_pred EEEcCCCCC-CC----CCC--C-----------CcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 146 IIIDAFDPI-RP----GHD--L-----------FEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 146 Ii~D~~~~~-~~----~~~--l-----------~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
|++|++... +. +.. . ...++++.+.+.|+|||+++..+.+
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 999987532 10 111 0 1246888889999999999876644
No 125
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.05 E-value=4.1e-09 Score=101.99 Aligned_cols=114 Identities=19% Similarity=0.195 Sum_probs=86.7
Q ss_pred CCCCeEEEEeccccHHHHHHHhcC-CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHA-SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.+..+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+ -.+++++.+|+..+.... .++||.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g----~~~v~~~~~Da~~l~~~~-~~~fD~ 310 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK----LSSIEIKIADAERLTEYV-QDTFDR 310 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhhhhhhh-hccCCE
Confidence 456789999999999999988752 34689999999999999999987652 236899999998764322 468999
Q ss_pred EEEcCCCCC-CC----CCCC-------------CcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 146 IIIDAFDPI-RP----GHDL-------------FEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 146 Ii~D~~~~~-~~----~~~l-------------~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
|++|++... +. +... ...+.+..+.+.|+|||.++..+.+
T Consensus 311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 999987632 11 1100 1256788899999999999887655
No 126
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.05 E-value=6.3e-09 Score=101.08 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=80.0
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc--CCCCccE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV--QSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~~fDv 145 (299)
+..+|||+|||+|.++..+++.. .+|+++|+|+.+++.|++++..++ -.+++++.+|+.+++.+. .+++||+
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~fD~ 370 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNG----LDNVTFYHANLEEDFTDQPWALGGFDK 370 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEeChHHhhhhhhhhcCCCCE
Confidence 45799999999999999998874 689999999999999999886542 246999999998876431 2467999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|++|++.... .+.++.+.+ +++++++.+.+
T Consensus 371 Vi~dPPr~g~-------~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 371 VLLDPPRAGA-------AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred EEECcCCcCh-------HHHHHHHHh-cCCCeEEEEEe
Confidence 9999765321 455665555 79999888855
No 127
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.05 E-value=1.5e-09 Score=98.69 Aligned_cols=94 Identities=20% Similarity=0.241 Sum_probs=72.5
Q ss_pred CCCeEEEEeccccHHHHHHHhcCC---ccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCcc
Q 037807 68 NPKKVLLIGGGDGGILREISRHAS---VEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~---~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fD 144 (299)
...+|||+|||+|..+..+++..+ ..+++++|+++.+++.|++.. +++++..+|+.+... +++.||
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~lp~--~~~sfD 153 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRLPF--ADQSLD 153 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecccCCC--cCCcee
Confidence 457899999999999999886422 137999999999999998753 467888899765421 257899
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+|++... ..++++++|+|+|||.|++..
T Consensus 154 ~I~~~~~-----------~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 154 AIIRIYA-----------PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred EEEEecC-----------CCCHHHHHhhccCCCEEEEEe
Confidence 9996422 224678899999999999854
No 128
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.05 E-value=2e-09 Score=95.38 Aligned_cols=104 Identities=20% Similarity=0.260 Sum_probs=81.2
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+..+||+||||+|.++..+++.. .+++++|+++.+++.+++++... ..+++++..|..++.... .++||+|+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~fD~Ii 119 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHALES-----GLKIDYRQTTAEELAAEH-PGQFDVVT 119 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHHHc-----CCceEEEecCHHHhhhhc-CCCccEEE
Confidence 46789999999999999888863 57999999999999999887643 236788899988876443 57899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+...-...+. ..++++.+.+.|+|||.+++..
T Consensus 120 ~~~~l~~~~~----~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 120 CMEMLEHVPD----PASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred EhhHhhccCC----HHHHHHHHHHHcCCCcEEEEEe
Confidence 8532211111 2678999999999999998764
No 129
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.03 E-value=9.6e-10 Score=95.97 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=69.9
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+++.+|||||||+|..+..+++..+..++++||+++++++.|+++++ +++++.+|+.+.. ++++||+|
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---------~~~~~~~d~~~~~---~~~sfD~V 109 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---------NINIIQGSLFDPF---KDNFFDLV 109 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---------CCcEEEeeccCCC---CCCCEEEE
Confidence 46778999999999999999886344689999999999999998653 4678888877622 36789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcC
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALR 174 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~Lk 174 (299)
++...-..-++. .-..+++.+.+.++
T Consensus 110 ~~~~vL~hl~p~--~~~~~l~el~r~~~ 135 (204)
T TIGR03587 110 LTKGVLIHINPD--NLPTAYRELYRCSN 135 (204)
T ss_pred EECChhhhCCHH--HHHHHHHHHHhhcC
Confidence 985533211111 12567888888873
No 130
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.03 E-value=5e-09 Score=97.39 Aligned_cols=103 Identities=14% Similarity=0.175 Sum_probs=79.4
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
++.+|||+|||+|.++..++++. .+|++||+++.+++.|+++....+ -++++++.+|+.++.... .++||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~~~----l~~v~~~~~D~~~~~~~~-~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAELG----LTNVQFQALDSTQFATAQ-GEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEcCHHHHHHhc-CCCCeEEE
Confidence 45899999999999999999863 689999999999999999986652 247999999999987543 45799999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecC
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
+|++.. + + ..+..+.+ ..++|++++.+.+.
T Consensus 246 ~dPPr~-G----~-~~~~~~~l-~~~~~~~ivyvsc~ 275 (315)
T PRK03522 246 VNPPRR-G----I-GKELCDYL-SQMAPRFILYSSCN 275 (315)
T ss_pred ECCCCC-C----c-cHHHHHHH-HHcCCCeEEEEECC
Confidence 997632 1 1 13444443 44788888887653
No 131
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=5e-09 Score=101.53 Aligned_cols=131 Identities=16% Similarity=0.192 Sum_probs=93.0
Q ss_pred CCCCeEEEEeccccHHHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc--CCCCc
Q 037807 67 PNPKKVLLIGGGDGGILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV--QSGTF 143 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~~f 143 (299)
.+..+|||+|||.|+.+..+++. .+..+|+++|+++.+++.+++++...+ -.+++++.+|+.++.... ..++|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG----LKSIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC----CCeEEEEeCChhhcccccccccccC
Confidence 34679999999999999998875 334689999999999999999987652 246999999998764211 14689
Q ss_pred cEEEEcCCCCC-CC----CCCCC-------------cHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhh
Q 037807 144 DAIIIDAFDPI-RP----GHDLF-------------EGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHR 202 (299)
Q Consensus 144 DvIi~D~~~~~-~~----~~~l~-------------t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~ 202 (299)
|.|++|++... +. +...+ ..+++..+.+.|||||.++..+.+ ....+....+...+++
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs-i~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT-LHPAENEAQIEQFLAR 402 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC-CChhhHHHHHHHHHHh
Confidence 99999987421 11 11001 257899999999999999876544 3333333444444543
No 132
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=4.2e-09 Score=102.37 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=86.4
Q ss_pred CCCCeEEEEeccccHHHHHHHhcC-CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHA-SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.+..+|||+|||+|+.+..++++. ...+|+++|+++.+++.+++++...+ -.+++++.+|+.++.. ++.||+
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g----~~~v~~~~~Da~~~~~---~~~fD~ 321 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG----ITIIETIEGDARSFSP---EEQPDA 321 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC----CCeEEEEeCccccccc---CCCCCE
Confidence 345799999999999998887642 34589999999999999999987652 2369999999987652 468999
Q ss_pred EEEcCCCCC-CC----CC-C-CC-----------cHHHHHHHHHhcCCCcEEEEecCCcc
Q 037807 146 IIIDAFDPI-RP----GH-D-LF-----------EGPFFELVAKALRPGGAMCIQAESLW 187 (299)
Q Consensus 146 Ii~D~~~~~-~~----~~-~-l~-----------t~ef~~~~~~~LkpgGvlv~~~~s~~ 187 (299)
|++|++... +. +. . .. ..+++..+.+.|+|||+++..+.+..
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 999976421 11 10 0 01 13579999999999999999775543
No 133
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.02 E-value=1.2e-08 Score=97.10 Aligned_cols=117 Identities=9% Similarity=0.083 Sum_probs=87.6
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
...+|||+|||+|.++.+++... .+|++||+|+..++.|++++...+ -.+++++.+|+.+++... .++||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~~~----~~~~~~~~~d~~~~~~~~-~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQMLG----LDNLSFAALDSAKFATAQ-MSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHHHHhc-CCCCCEEE
Confidence 34789999999999999998653 689999999999999999987652 237999999999988643 35699999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhc
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIF 204 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F 204 (299)
+|++.. +. ..++.+.+. .++|++++.+.+ ++..+.+=++.| .-|
T Consensus 306 ~DPPr~-G~-----~~~~l~~l~-~~~p~~ivyvsc-----~p~TlaRDl~~L-~gy 349 (374)
T TIGR02085 306 VNPPRR-GI-----GKELCDYLS-QMAPKFILYSSC-----NAQTMAKDIAEL-SGY 349 (374)
T ss_pred ECCCCC-CC-----cHHHHHHHH-hcCCCeEEEEEe-----CHHHHHHHHHHh-cCc
Confidence 998753 21 256666665 489999888854 233444444455 334
No 134
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=1e-08 Score=91.37 Aligned_cols=160 Identities=15% Similarity=0.206 Sum_probs=104.5
Q ss_pred eCCcccEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHh-hcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEE
Q 037807 20 KSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITH-LPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHIC 98 (299)
Q Consensus 20 ~s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~-~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~V 98 (299)
+-|+|+| +-+.++.+-.|..--.+.+..+..-.+-++... +.-..|..+..+||+|||+|+++..+++.-+...|++|
T Consensus 100 r~PlQYI-lg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~Ai 178 (328)
T KOG2904|consen 100 RMPLQYI-LGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAI 178 (328)
T ss_pred cCChhhe-eccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEE
Confidence 5578887 666654444444444444544443333444322 22233445668999999999999999985557899999
Q ss_pred ECCHHHHHHHHhhchhhhcCCCCCCEEEEEc----cHHHHHHhcCCCCccEEEEcCCCCCC-------CCCCCC------
Q 037807 99 EIDTMLINVYKEYFPEIAIGYEDSRVILHVC----DGSEYLKTVQSGTFDAIIIDAFDPIR-------PGHDLF------ 161 (299)
Q Consensus 99 Eid~~vi~~a~~~~~~~~~~~~~~rv~v~~~----D~~~~l~~~~~~~fDvIi~D~~~~~~-------~~~~l~------ 161 (299)
|.++..+.+|.++...... ..++.+++- |...-.+ ...+++|+|+++++.-.. +.-.+|
T Consensus 179 D~S~~Ai~La~eN~qr~~l---~g~i~v~~~~me~d~~~~~~-l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lAL 254 (328)
T KOG2904|consen 179 DVSKAAIKLAKENAQRLKL---SGRIEVIHNIMESDASDEHP-LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLAL 254 (328)
T ss_pred eccHHHHHHHHHHHHHHhh---cCceEEEecccccccccccc-cccCceeEEecCCCcccccchhhcCchheecCchhhh
Confidence 9999999999999766522 357887744 3332222 125899999998764211 101111
Q ss_pred ---------cHHHHHHHHHhcCCCcEEEEecC
Q 037807 162 ---------EGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 162 ---------t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
-..++..+.|+|+|||.+.++..
T Consensus 255 dGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 255 DGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 14577788999999999998764
No 135
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.00 E-value=3.4e-09 Score=93.13 Aligned_cols=105 Identities=17% Similarity=0.196 Sum_probs=80.9
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
.+.+||++|||+|.++..+++.. .+++++|+++.+++.+++++... ...++++..+|+.++.... .++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~~~~~-~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKD----PLLKIEYRCTSVEDLAEKG-AKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHc----CCCceEEEeCCHHHhhcCC-CCCccEEE
Confidence 47799999999999999888763 46999999999999999887643 1126889999998876543 47899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+...-..... ...+++.+.+.|++||.+++..
T Consensus 118 ~~~~l~~~~~----~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 118 CMEVLEHVPD----PQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred ehhHHHhCCC----HHHHHHHHHHhcCCCcEEEEEe
Confidence 8532111111 2678999999999999988754
No 136
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.00 E-value=2.5e-08 Score=96.54 Aligned_cols=103 Identities=11% Similarity=0.062 Sum_probs=81.2
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc--CCCCcc
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV--QSGTFD 144 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~~fD 144 (299)
.+..+|||+|||+|.++..+++.. .+|++||+++.+++.|++++..++ -.+++++.+|+.+++... ..++||
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~----~~nv~~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNG----IANVEFLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhC----CCceEEEeCCHHHHHHHHHhcCCCCC
Confidence 345799999999999999998863 689999999999999999987652 358999999998877542 135799
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+|++|++.. +. ..++++.+.+ |+|++++.+.
T Consensus 365 ~vi~dPPr~-G~-----~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 365 VLLLDPPRK-GC-----AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred EEEECcCCC-CC-----CHHHHHHHHh-cCCCEEEEEc
Confidence 999998753 21 2677776654 8999887764
No 137
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.00 E-value=1.1e-09 Score=107.06 Aligned_cols=105 Identities=19% Similarity=0.203 Sum_probs=78.6
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+..+|||||||+|..+..++++. .+|++||+++.+++.+++..+ ..++++++.+|+.......++++||+|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~------~~~~i~~~~~d~~~~~~~~~~~~fD~I~ 108 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESING------HYKNVKFMCADVTSPDLNISDGSVDLIF 108 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhc------cCCceEEEEecccccccCCCCCCEEEEe
Confidence 45689999999999999999874 589999999999998776332 1368999999986422112357899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+...-...+... ..++++.+++.|+|||.+++.
T Consensus 109 ~~~~l~~l~~~~--~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 109 SNWLLMYLSDKE--VENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred hhhhHHhCCHHH--HHHHHHHHHHhcCCCeEEEEE
Confidence 865432111100 157899999999999999875
No 138
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.99 E-value=1.8e-09 Score=89.32 Aligned_cols=96 Identities=26% Similarity=0.441 Sum_probs=68.3
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
++..+|||||||+|.++..+.+.+ .+++++|+++.+++. .+ +.....+...... ++++||+|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~--~~------------~~~~~~~~~~~~~--~~~~fD~i 82 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK--RN------------VVFDNFDAQDPPF--PDGSFDLI 82 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH--TT------------SEEEEEECHTHHC--HSSSEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh--hh------------hhhhhhhhhhhhc--cccchhhH
Confidence 568899999999999999997764 389999999999998 11 1111111112111 26899999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecC
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
++...-..-+. -..+++.+++.|||||.+++...
T Consensus 83 ~~~~~l~~~~d----~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 83 ICNDVLEHLPD----PEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp EEESSGGGSSH----HHHHHHHHHHCEEEEEEEEEEEE
T ss_pred hhHHHHhhccc----HHHHHHHHHHhcCCCCEEEEEEc
Confidence 98533221111 27899999999999999998653
No 139
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.98 E-value=3.8e-09 Score=92.52 Aligned_cols=111 Identities=21% Similarity=0.294 Sum_probs=79.1
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcC-C--C------------------------
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIG-Y--E------------------------ 120 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~-~--~------------------------ 120 (299)
.++.+|||||-.|.++..++++.+...|.+||||+..++.|+++++..... . .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 478999999999999999999998899999999999999999987654210 0 0
Q ss_pred ---------CCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCC-C---CCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 121 ---------DSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPI-R---PGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 121 ---------~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~-~---~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
..+.+++ .+-.+|+.. ...+||+|++-+-.-+ . ....| ..||+.+++.|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~v-le~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL--~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYV-LESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGL--RRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEE-Eecchhhhh-ccccccEEEEEEeeeeEecccccHHH--HHHHHHHHHhhCcCcEEEEc
Confidence 0011111 122234432 2678999998443322 1 11122 78999999999999999984
No 140
>PTZ00146 fibrillarin; Provisional
Probab=98.98 E-value=2.6e-08 Score=90.81 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=93.5
Q ss_pred CCCCCeEEEEeccccHHHHHHHhcC-CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHH-hcCCCCc
Q 037807 66 IPNPKKVLLIGGGDGGILREISRHA-SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLK-TVQSGTF 143 (299)
Q Consensus 66 ~~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~-~~~~~~f 143 (299)
..+..+|||||||+|.++..+++.- +...|++||+++.+.+...+... ..+++..+.+|+..-.. ....+.+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak------~r~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK------KRPNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh------hcCCCEEEECCccChhhhhcccCCC
Confidence 3456799999999999999999863 24589999999976543333222 12578999999864211 0113579
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec--CCccc--ch-HHHHHHHHHHhhh-cCCceeeeEEeecc
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA--ESLWF--QQ-FSVQHLIDDCHRI-FKGSASYAWTTVPT 217 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~--~s~~~--~~-~~~~~~~~~l~~~-F~~~v~~~~~~vP~ 217 (299)
|+|++|...|.. ...+..++.+.|||||.|++.. .+... .+ +.+.+-++.|++. |. .+. ...++.
T Consensus 204 DvV~~Dva~pdq------~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~-~~e--~v~L~P 274 (293)
T PTZ00146 204 DVIFADVAQPDQ------ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLK-PKE--QLTLEP 274 (293)
T ss_pred CEEEEeCCCcch------HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCc-eEE--EEecCC
Confidence 999999865431 1345668899999999988732 22222 12 2345545777765 73 232 234544
Q ss_pred cCCcceeEEeccc
Q 037807 218 YPSGVIGFMLCST 230 (299)
Q Consensus 218 ~~~g~w~~~~ask 230 (299)
|.... .++++..
T Consensus 275 y~~~h-~~v~~~~ 286 (293)
T PTZ00146 275 FERDH-AVVIGVY 286 (293)
T ss_pred ccCCc-EEEEEEE
Confidence 54333 3455443
No 141
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.97 E-value=2.9e-09 Score=98.45 Aligned_cols=107 Identities=20% Similarity=0.182 Sum_probs=78.9
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.+..+|||||||+|..+.+++++.+..+++++|+ |.+++.++++....+ . .+|++++.+|+.+. . -..+|+|
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g--l-~~rv~~~~~d~~~~--~--~~~~D~v 219 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--V-ADRMRGIAVDIYKE--S--YPEADAV 219 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC--c-cceEEEEecCccCC--C--CCCCCEE
Confidence 3457999999999999999998655678999998 789999998876542 1 45899999998652 1 2347998
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
++...-...... ....+++++++.|+|||.+++..
T Consensus 220 ~~~~~lh~~~~~--~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 220 LFCRILYSANEQ--LSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EeEhhhhcCChH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 864322111100 11468999999999999998753
No 142
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.96 E-value=1.6e-09 Score=93.20 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=75.0
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.++.++||||||.|..+..+++.. -.|+++|+++..++.+++..... .-.++....|..++-- ++.||+|
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~~-----~l~i~~~~~Dl~~~~~---~~~yD~I 98 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEEE-----GLDIRTRVADLNDFDF---PEEYDFI 98 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHT-----T-TEEEEE-BGCCBS----TTTEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhhc-----CceeEEEEecchhccc---cCCcCEE
Confidence 368899999999999999999984 47999999999999887765432 3358889999765432 4689999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
++...-..-.+. .-..+++.+++.++|||.+++.
T Consensus 99 ~st~v~~fL~~~--~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 99 VSTVVFMFLQRE--LRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EEESSGGGS-GG--GHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEEeccCCHH--HHHHHHHHHHhhcCCcEEEEEE
Confidence 975322211111 1267899999999999998764
No 143
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.95 E-value=2.2e-09 Score=93.99 Aligned_cols=106 Identities=16% Similarity=0.225 Sum_probs=79.9
Q ss_pred CCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 66 IPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 66 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
++..+.++|+|||+|.+++-++.|+ ++|+++|+++.|++.++++.+.. +.+...++...+..+++. .+++.|+
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~---y~~t~~~ms~~~~v~L~g--~e~SVDl 103 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVT---YCHTPSTMSSDEMVDLLG--GEESVDL 103 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcc---cccCCccccccccccccC--CCcceee
Confidence 4455689999999999999999996 78999999999999999988753 223445556666666654 2688999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCc-EEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGG-AMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgG-vlv~~~ 183 (299)
|++--.-++.. .++||+.++|.||++| ++++-.
T Consensus 104 I~~Aqa~HWFd-----le~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 104 ITAAQAVHWFD-----LERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred ehhhhhHHhhc-----hHHHHHHHHHHcCCCCCEEEEEE
Confidence 99743222211 2889999999999887 777643
No 144
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.95 E-value=1.1e-08 Score=87.28 Aligned_cols=110 Identities=17% Similarity=0.233 Sum_probs=86.2
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCC--ccE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGT--FDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~--fDv 145 (299)
...++||+-+|+|+++.|.+.+ +..+++.||.|...+...++++...+. ..+.+++..|+..+++.. ..+ ||+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~~---~~~~~~~~~da~~~L~~~-~~~~~FDl 117 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALGL---EGEARVLRNDALRALKQL-GTREPFDL 117 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhCC---ccceEEEeecHHHHHHhc-CCCCcccE
Confidence 5789999999999999999988 478999999999999999999876621 478999999999998876 344 999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHH--HHHhcCCCcEEEEecCC
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFEL--VAKALRPGGAMCIQAES 185 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~--~~~~LkpgGvlv~~~~s 185 (299)
|++|++...+.... ..-+.. -...|+|+|.+++...+
T Consensus 118 VflDPPy~~~l~~~---~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 118 VFLDPPYAKGLLDK---ELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred EEeCCCCccchhhH---HHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 99998876432110 112222 24679999999996543
No 145
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.95 E-value=3.4e-09 Score=93.09 Aligned_cols=110 Identities=14% Similarity=0.122 Sum_probs=75.5
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhh--------cCCCCCCEEEEEccHHHHHHhc
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIA--------IGYEDSRVILHVCDGSEYLKTV 138 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~--------~~~~~~rv~v~~~D~~~~l~~~ 138 (299)
++..+||++|||.|..+..++++. -+|++||+++..++.+.+...... ......+++++++|+.++-...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 356799999999999999999874 579999999999998644221100 0012457999999988764322
Q ss_pred CCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 139 QSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 139 ~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
.++||.|+-...-..-++ . .-..+++.+.+.|+|||++++
T Consensus 111 -~~~fD~i~D~~~~~~l~~-~-~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 111 -LGPVDAVYDRAALIALPE-E-MRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred -CCCcCEEEechhhccCCH-H-HHHHHHHHHHHHcCCCCeEEE
Confidence 357999874322111111 1 125689999999999997544
No 146
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.94 E-value=7.1e-09 Score=91.13 Aligned_cols=101 Identities=18% Similarity=0.244 Sum_probs=74.9
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
...+|||||||+|.++..+++.. .+|+++|+|+++++.|++.++... ...++++..+|+.+. .++||+|+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~--~~v~gvD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~-----~~~fD~ii 124 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMVQMARNRAQGRD---VAGNVEFEVNDLLSL-----CGEFDIVV 124 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChhhC-----CCCcCEEE
Confidence 57899999999999999998763 589999999999999999876431 124799999997553 36899998
Q ss_pred E-cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 148 I-DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 148 ~-D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
+ +..... +... ...+++.+.+.+++++++.+
T Consensus 125 ~~~~l~~~-~~~~--~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 125 CMDVLIHY-PASD--MAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EhhHHHhC-CHHH--HHHHHHHHHHHhCCCEEEEE
Confidence 7 322211 1110 14678888888887766665
No 147
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.94 E-value=1.2e-08 Score=98.58 Aligned_cols=118 Identities=17% Similarity=0.189 Sum_probs=83.7
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.+..+|||+|||.|+.+..+++..+..+|+++|+++.+++.+++++...+ .. .++.+..+|+.........++||.|
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g--~~-~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG--LT-IKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC--CC-eEEEEeccccccccccccccccCEE
Confidence 34689999999999999999885445689999999999999999987652 11 2344466676532210124679999
Q ss_pred EEcCCCCC-CC----CCCCC-------------cHHHHHHHHHhcCCCcEEEEecCCcc
Q 037807 147 IIDAFDPI-RP----GHDLF-------------EGPFFELVAKALRPGGAMCIQAESLW 187 (299)
Q Consensus 147 i~D~~~~~-~~----~~~l~-------------t~ef~~~~~~~LkpgGvlv~~~~s~~ 187 (299)
++|++... |. +...+ ..+++..+.+.|||||.++..+.|..
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 99976432 21 11111 25788999999999999998775543
No 148
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.92 E-value=1.3e-08 Score=96.77 Aligned_cols=100 Identities=20% Similarity=0.324 Sum_probs=83.0
Q ss_pred CeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEc
Q 037807 70 KKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIID 149 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D 149 (299)
.+|||++||+|..+..+++..+..+|+++|+|+..++.+++++..++ -.+++++.+|+..++.. .++||+|++|
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~----~~~~~v~~~Da~~~l~~--~~~fD~V~lD 132 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG----LENEKVFNKDANALLHE--ERKFDVVDID 132 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCceEEEhhhHHHHHhh--cCCCCEEEEC
Confidence 58999999999999999876556789999999999999999987652 23577999999998863 3579999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 150 AFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 150 ~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
++ +. ..+|+....+.+++||++.+.+
T Consensus 133 P~---Gs-----~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 133 PF---GS-----PAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CC---CC-----cHHHHHHHHHHhcCCCEEEEEe
Confidence 75 21 1678888888899999998864
No 149
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.92 E-value=7.4e-09 Score=95.64 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=76.0
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCC-ccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCC---CC
Q 037807 67 PNPKKVLLIGGGDGGILREISRHAS-VEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQS---GT 142 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~---~~ 142 (299)
+++.+||++|||+|..++.+++... ..++++||+|++|++.|++.+... +..-++..+++|..+.+.-... ..
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~---~p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD---YPQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh---CCCceEEEEEEcccchhhhhcccccCC
Confidence 3567899999999999999987642 368999999999999999887532 1123466789998765432101 12
Q ss_pred ccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 143 FDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 143 fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
..+++++..-..-+.. -...+++.+++.|+|||.|++..
T Consensus 139 ~~~~~~gs~~~~~~~~--e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 139 RLGFFPGSTIGNFTPE--EAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred eEEEEecccccCCCHH--HHHHHHHHHHHhcCCCCEEEEec
Confidence 2233334332211111 12578999999999999999744
No 150
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.91 E-value=6.7e-08 Score=91.54 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=77.2
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcC---------
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQ--------- 139 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~--------- 139 (299)
+.+|||++||+|.++..+++.. .+|++||+++.+++.+++++..++ -.+++++.+|+.++++...
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANG----IDNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHhhcccccccc
Confidence 3579999999999999888763 589999999999999999987652 2489999999999876421
Q ss_pred -----CCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 140 -----SGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 140 -----~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
..+||+|++|++. .+. ..+.++.+.+ +++++.+.+
T Consensus 281 ~~~~~~~~~D~v~lDPPR-~G~-----~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPR-AGL-----DDETLKLVQA---YERILYISC 320 (362)
T ss_pred cccccCCCCCEEEECCCC-CCC-----cHHHHHHHHc---cCCEEEEEe
Confidence 1259999999885 231 2556666554 688888755
No 151
>PRK05785 hypothetical protein; Provisional
Probab=98.91 E-value=7.8e-09 Score=91.64 Aligned_cols=91 Identities=12% Similarity=0.043 Sum_probs=68.4
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
++.+|||||||+|..++.+++.. ..+|++||++++|++.|++.. ..+.+|+.+.- .++++||+|+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~~lp--~~d~sfD~v~ 115 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD------------DKVVGSFEALP--FRDKSFDVVM 115 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc------------ceEEechhhCC--CCCCCEEEEE
Confidence 46799999999999999998864 358999999999999998631 23567776532 2368999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCc
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGG 177 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgG 177 (299)
+...-...+. ....+++++|+|||.+
T Consensus 116 ~~~~l~~~~d----~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 116 SSFALHASDN----IEKVIAEFTRVSRKQV 141 (226)
T ss_pred ecChhhccCC----HHHHHHHHHHHhcCce
Confidence 8543221111 2678999999999953
No 152
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.5e-08 Score=86.05 Aligned_cols=99 Identities=20% Similarity=0.276 Sum_probs=77.3
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+.+.|+|+|||||.++..++-. +..+|.+||+|++.++.++++.... ..+++++++|..++ ..++|.+|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~-----~~~~dtvi 113 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDF-----RGKFDTVI 113 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhc-----CCccceEE
Confidence 4678999999999999988766 4689999999999999999998764 45899999998776 67899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
+|++-.... .+ ...+|+....+.- +.+..+
T Consensus 114 mNPPFG~~~-rh-aDr~Fl~~Ale~s--~vVYsi 143 (198)
T COG2263 114 MNPPFGSQR-RH-ADRPFLLKALEIS--DVVYSI 143 (198)
T ss_pred ECCCCcccc-cc-CCHHHHHHHHHhh--heEEEe
Confidence 998654321 11 3578888777655 344444
No 153
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.89 E-value=1.9e-08 Score=95.27 Aligned_cols=102 Identities=17% Similarity=0.202 Sum_probs=86.5
Q ss_pred CCeEEEEeccccHHHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 69 PKKVLLIGGGDGGILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+.+|||+.+|+|..+.+.++. +++.+|+++|+|+..++.+++++..++ -.+++++.+|+..++... .++||+|.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~----~~~~~v~~~Da~~~l~~~-~~~fDvId 119 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS----VENIEVPNEDAANVLRYR-NRKFHVID 119 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEchhHHHHHHHh-CCCCCEEE
Confidence 358999999999999999886 467899999999999999999987652 236899999999999865 57899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+|++.. + .+|+..+.+.++++|++.+.+
T Consensus 120 lDPfGs--~------~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 120 IDPFGT--P------APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred eCCCCC--c------HHHHHHHHHhcccCCEEEEEe
Confidence 997531 1 579999999999999988863
No 154
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.89 E-value=7.4e-09 Score=88.48 Aligned_cols=96 Identities=20% Similarity=0.158 Sum_probs=72.1
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
++..||||||||+|.++..+.+.. ..+..+||+|++-+..|.+. .+.++++|+.+.+...++++||.|
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r-----------Gv~Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR-----------GVSVIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc-----------CCCEEECCHHHhHhhCCCCCccEE
Confidence 456899999999999999888764 45789999999988877753 678999999999988888999999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
|+.-+-..-. ...+.++++.|+ |...++
T Consensus 80 IlsqtLQ~~~----~P~~vL~EmlRV---gr~~IV 107 (193)
T PF07021_consen 80 ILSQTLQAVR----RPDEVLEEMLRV---GRRAIV 107 (193)
T ss_pred ehHhHHHhHh----HHHHHHHHHHHh---cCeEEE
Confidence 9854322111 115556666554 444444
No 155
>PRK06202 hypothetical protein; Provisional
Probab=98.88 E-value=8.2e-09 Score=91.58 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=70.6
Q ss_pred CCCCeEEEEeccccHHHHHHHhc----CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCC
Q 037807 67 PNPKKVLLIGGGDGGILREISRH----ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGT 142 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~ 142 (299)
.++.+|||||||+|.++..+++. ....+|++||+++++++.|++... .+++++...|+..... .+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~-------~~~~~~~~~~~~~l~~--~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR-------RPGVTFRQAVSDELVA--EGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc-------cCCCeEEEEecccccc--cCCC
Confidence 45689999999999999888753 223589999999999999998753 2356666665543322 2578
Q ss_pred ccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEE
Q 037807 143 FDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMC 180 (299)
Q Consensus 143 fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv 180 (299)
||+|++...-...+... ...+++.+.+.++ +++++
T Consensus 130 fD~V~~~~~lhh~~d~~--~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAE--VVRLLADSAALAR-RLVLH 164 (232)
T ss_pred ccEEEECCeeecCChHH--HHHHHHHHHHhcC-eeEEE
Confidence 99999964332221111 1468999999998 44444
No 156
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.88 E-value=1.2e-07 Score=89.63 Aligned_cols=116 Identities=11% Similarity=0.118 Sum_probs=83.3
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcC--------C
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQ--------S 140 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~--------~ 140 (299)
+.+|||+|||+|.++..+++.. .+|++||+++++++.+++++..++ -.+++++.+|+.+++.... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN----IDNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEEcCHHHHHHHHhhcccccccc
Confidence 3579999999999999888764 589999999999999999987652 2479999999999886410 1
Q ss_pred ------CCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhc
Q 037807 141 ------GTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIF 204 (299)
Q Consensus 141 ------~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F 204 (299)
.+||+|++|++. .|. ..++++.+.+ +++++.+.+. +..+.+=++.|.+.|
T Consensus 272 ~~~~~~~~~d~v~lDPPR-~G~-----~~~~l~~l~~---~~~ivYvsC~-----p~tlaRDl~~L~~~Y 327 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPR-AGL-----DPDTCKLVQA---YERILYISCN-----PETLKANLEQLSETH 327 (353)
T ss_pred ccccccCCCCEEEECCCC-CCC-----cHHHHHHHHc---CCcEEEEEcC-----HHHHHHHHHHHhcCc
Confidence 248999999884 232 2555665544 7888888552 333444444453335
No 157
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.88 E-value=3.8e-08 Score=97.05 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=92.2
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+..-+|+||||.|..+.++++..+...+.+||+....+..+.+..... +-.++.++.+|+..+....++++.|.|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~----~l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ----NITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc----CCCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 456799999999999999998656678999999998777666554332 2357888999987665555568899999
Q ss_pred EcCCCCCC----CCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 148 IDAFDPIR----PGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 148 ~D~~~~~~----~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
+..+||+. ....+.+.+|++.+.+.|+|||.+-+.+.+
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 99999983 246789999999999999999999986644
No 158
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.86 E-value=2.7e-08 Score=87.63 Aligned_cols=102 Identities=19% Similarity=0.256 Sum_probs=70.8
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
++..+|||||||+|.++..++++. .+|+++|+++.+++.|++.+.... . ..+++++.+|. .. . .+.||+|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~--~-~~~i~~~~~d~-~~---~-~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAG--L-AGNITFEVGDL-ES---L-LGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC--C-ccCcEEEEcCc-hh---c-cCCcCEE
Confidence 456799999999999999998864 469999999999999999876431 1 25789999993 22 2 5789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEE
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMC 180 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv 180 (299)
++...-...+... ....++.+.+.+++++++.
T Consensus 132 ~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 132 VCLDVLIHYPQED--AARMLAHLASLTRGSLIFT 163 (230)
T ss_pred EEcchhhcCCHHH--HHHHHHHHHhhcCCeEEEE
Confidence 9743221111111 1456777777665444443
No 159
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.84 E-value=1e-08 Score=90.41 Aligned_cols=109 Identities=13% Similarity=0.073 Sum_probs=75.3
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhh--------cCCCCCCEEEEEccHHHHHHhc
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIA--------IGYEDSRVILHVCDGSEYLKTV 138 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~--------~~~~~~rv~v~~~D~~~~l~~~ 138 (299)
++..+||++|||.|..+..++++. .+|++||+++..++.+.+...... ......+++++++|+.++....
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 345799999999999999999874 579999999999997643211100 0123568999999998874322
Q ss_pred CCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEE
Q 037807 139 QSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMC 180 (299)
Q Consensus 139 ~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv 180 (299)
...||.|+--..-..-++. ....+++.+.+.|+|||+++
T Consensus 114 -~~~fd~v~D~~~~~~l~~~--~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 114 -LADVDAVYDRAALIALPEE--MRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred -CCCeeEEEehHhHhhCCHH--HHHHHHHHHHHHcCCCCeEE
Confidence 3579999842211111110 12678999999999998533
No 160
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.84 E-value=6e-09 Score=94.52 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=73.8
Q ss_pred CCCeEEEEeccccH----HHHHHHhcCC-----ccEEEEEECCHHHHHHHHhhchh-hh-cCC-----------------
Q 037807 68 NPKKVLLIGGGDGG----ILREISRHAS-----VEQIHICEIDTMLINVYKEYFPE-IA-IGY----------------- 119 (299)
Q Consensus 68 ~~~~VL~IG~G~G~----~~~~l~~~~~-----~~~v~~VEid~~vi~~a~~~~~~-~~-~~~----------------- 119 (299)
.+.+|+++|||+|. ++..+++..+ ..+|+++|+|+.+++.|++..-. .. ...
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 4444544321 35899999999999999985311 00 000
Q ss_pred ----CCCCEEEEEccHHHHHHhcCCCCccEEEEc-CCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 120 ----EDSRVILHVCDGSEYLKTVQSGTFDAIIID-AFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 120 ----~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D-~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
-..++++...|+.+... +.++||+|++- ......++ ....+++.+++.|+|||.+++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~--~~~~fD~I~crnvl~yf~~~---~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP--PLGDFDLIFCRNVLIYFDEP---TQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC--ccCCCCEEEechhHHhCCHH---HHHHHHHHHHHHhCCCeEEEEEC
Confidence 01368888888765321 25789999983 21111100 02579999999999999999843
No 161
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.81 E-value=1.6e-07 Score=82.04 Aligned_cols=106 Identities=23% Similarity=0.276 Sum_probs=87.0
Q ss_pred CCCeEEEEeccccHHHHHHHh-cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc----CCCC
Q 037807 68 NPKKVLLIGGGDGGILREISR-HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV----QSGT 142 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~----~~~~ 142 (299)
+++++|+||.-+|..+..++. .|...+|+++|+|++-.+++.+..... + -+.+++++++++.+-+.+. ..++
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a-g--v~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA-G--VDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc-c--ccceeeeeecchhhhHHHHHhcCCCCc
Confidence 789999999999999888764 677789999999999999997654432 1 2568999999998877654 3578
Q ss_pred ccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 143 FDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 143 fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
||.+++|..... | ..+|..+.+.|++||++++.-
T Consensus 150 fDfaFvDadK~n------Y-~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 150 FDFAFVDADKDN------Y-SNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred eeEEEEccchHH------H-HHHHHHHHhhcccccEEEEec
Confidence 999999976542 2 478999999999999999854
No 162
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.81 E-value=2.7e-08 Score=86.39 Aligned_cols=100 Identities=20% Similarity=0.336 Sum_probs=76.5
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.+...|||+.||-|.++..++++...+.|.++|++|..++..+++...+.. ..++.++.+|+++++. ...+|.|
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv---~~~i~~~~~D~~~~~~---~~~~drv 173 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV---ENRIEVINGDAREFLP---EGKFDRV 173 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT----TTTEEEEES-GGG------TT-EEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC---CCeEEEEcCCHHHhcC---ccccCEE
Confidence 467899999999999999999966678899999999999999999887632 3579999999999987 5789999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEE
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMC 180 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv 180 (299)
+++.+.. +.+|+..+.+.+++||++-
T Consensus 174 im~lp~~--------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLPES--------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--TSS--------GGGGHHHHHHHEEEEEEEE
T ss_pred EECChHH--------HHHHHHHHHHHhcCCcEEE
Confidence 9987654 3789999999999999863
No 163
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.80 E-value=5.5e-09 Score=90.88 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=71.7
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
...++||+|+|-|.++..++-.- ..+|++||..+..++.|++++... ...-.++++.-..+|... +.+||+|.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~----~~~v~~~~~~gLQ~f~P~--~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD----NPRVGEFYCVGLQDFTPE--EGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG----GCCEEEEEES-GGG------TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc----CCCcceEEecCHhhccCC--CCcEeEEE
Confidence 46899999999999999887532 589999999999999999988642 123466777777777653 47999999
Q ss_pred EcCCCCCCCCCCCC---cHHHHHHHHHhcCCCcEEEEe
Q 037807 148 IDAFDPIRPGHDLF---EGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 148 ~D~~~~~~~~~~l~---t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+-..-. +|. -.+|++.|++.|+|+|++++.
T Consensus 128 ~QW~lg-----hLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 128 IQWCLG-----HLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp EES-GG-----GS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ehHhhc-----cCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 843221 111 167999999999999999983
No 164
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.77 E-value=1.1e-07 Score=88.14 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=70.8
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhc-CCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAI-GYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~-~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+..+|||||||+|.++..+++.. .+|+++|+++.|++.++++.+.... .....++++...|.... +++||+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-----~~~fD~V 216 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-----SGKYDTV 216 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----CCCcCEE
Confidence 45799999999999999999863 5899999999999999998764311 01134678888896432 4789999
Q ss_pred EEc-CCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 147 IID-AFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 147 i~D-~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
++- ...+ .+... ..++++.+.+ +.++|+++..
T Consensus 217 v~~~vL~H-~p~~~--~~~ll~~l~~-l~~g~liIs~ 249 (315)
T PLN02585 217 TCLDVLIH-YPQDK--ADGMIAHLAS-LAEKRLIISF 249 (315)
T ss_pred EEcCEEEe-cCHHH--HHHHHHHHHh-hcCCEEEEEe
Confidence 863 2211 11110 1345666654 5677776643
No 165
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.77 E-value=1.2e-07 Score=86.40 Aligned_cols=110 Identities=22% Similarity=0.370 Sum_probs=78.1
Q ss_pred hhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHH---HhhchhhhcCCCCCCEEEEE
Q 037807 52 CAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVY---KEYFPEIAIGYEDSRVILHV 128 (299)
Q Consensus 52 ~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a---~~~~~~~~~~~~~~rv~v~~ 128 (299)
.-+....-|++-+ ..++|||||||+|..+-.+++. +.+.|+++|.++...-.+ +++++ .+.++.. .
T Consensus 102 ~KW~rl~p~l~~L---~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg------~~~~~~~-l 170 (315)
T PF08003_consen 102 WKWDRLLPHLPDL---KGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLG------QDPPVFE-L 170 (315)
T ss_pred chHHHHHhhhCCc---CCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhC------CCccEEE-c
Confidence 5567777776433 5789999999999999999887 467899999988765432 33332 1222332 2
Q ss_pred ccHHHHHHhcCCCCccEEEEcC-----CCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 129 CDGSEYLKTVQSGTFDAIIIDA-----FDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 129 ~D~~~~l~~~~~~~fDvIi~D~-----~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
..+.+.+.. .+.||+|++-. .+| .+.++.+++.|++||.+++.+
T Consensus 171 plgvE~Lp~--~~~FDtVF~MGVLYHrr~P---------l~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 171 PLGVEDLPN--LGAFDTVFSMGVLYHRRSP---------LDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred Ccchhhccc--cCCcCEEEEeeehhccCCH---------HHHHHHHHHhhCCCCEEEEEE
Confidence 345555554 47899999832 233 778999999999999999865
No 166
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.77 E-value=2.8e-09 Score=92.75 Aligned_cols=101 Identities=20% Similarity=0.276 Sum_probs=76.6
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEE
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIII 148 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~ 148 (299)
-+++||||||||-++-.+-.. +.++++||||++|++.|.+.=- -=++.++|+..|++...+++||+|..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~---------YD~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGL---------YDTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccc---------hHHHHHHHHHHHhhhccCCcccchhh
Confidence 578999999999998887654 4789999999999999987411 11456678888987555789999986
Q ss_pred -cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 149 -DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 149 -D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
|...-.+. -..+|..+...|+|||.|+++++.
T Consensus 195 aDVl~YlG~-----Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 195 ADVLPYLGA-----LEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred hhHHHhhcc-----hhhHHHHHHHhcCCCceEEEEecc
Confidence 33221121 156888999999999999987643
No 167
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.66 E-value=4.2e-08 Score=87.50 Aligned_cols=99 Identities=21% Similarity=0.215 Sum_probs=72.7
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+..++|+|||||.|..+..+++..+..++++.|+ |.|++.+++ .+|++++.+|.+ ... +. +|+|
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f---~~~-P~-~D~~ 162 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF---DPL-PV-ADVY 162 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT---TCC-SS-ESEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH---hhh-cc-ccce
Confidence 4567999999999999999997555678999999 999999888 269999999976 333 34 9999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCC--cEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPG--GAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~Lkpg--Gvlv~~~ 183 (299)
++--.-+..+.. -...+++++++.|+|| |.+++.-
T Consensus 163 ~l~~vLh~~~d~--~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 163 LLRHVLHDWSDE--DCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EEESSGGGS-HH--HHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred eeehhhhhcchH--HHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 983322111110 1267899999999988 9888753
No 168
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.65 E-value=3.3e-07 Score=84.37 Aligned_cols=100 Identities=22% Similarity=0.261 Sum_probs=73.6
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+..+|||||||.|.++..+++.. .+|++||+|+.+++.+++.+...+ ..++++++.+|+.+.- ...||+|+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~---~~~~v~ii~~Dal~~~----~~~~d~Vv 106 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSP---LASKLEVIEGDALKTE----FPYFDVCV 106 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcC---CCCcEEEEECCHhhhc----ccccCEEE
Confidence 56789999999999999998863 579999999999999999876431 1468999999997752 24689999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHH-hcCCCcEEEEe
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAK-ALRPGGAMCIQ 182 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~-~LkpgGvlv~~ 182 (299)
.+++.... ++..++.+.. ..-...++++|
T Consensus 107 aNlPY~Is------tpil~~ll~~~~~~~~~vlm~Q 136 (294)
T PTZ00338 107 ANVPYQIS------SPLVFKLLAHRPLFRCAVLMFQ 136 (294)
T ss_pred ecCCcccC------cHHHHHHHhcCCCCceeeeeeh
Confidence 88766533 3445555532 12234566665
No 169
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.64 E-value=7.2e-07 Score=82.88 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=61.2
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEE-ccHHHHHHhc--CCCCcc
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHV-CDGSEYLKTV--QSGTFD 144 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~--~~~~fD 144 (299)
...+|||||||+|++...++......+++++|||+..++.|++++..+. .+ ..+++++. .|........ +.++||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np-~l-~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANP-GL-NGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc-CC-cCcEEEEEccchhhhhhcccccCCceE
Confidence 4578999999999888777653334689999999999999999987541 11 24788864 3443333321 256899
Q ss_pred EEEEcCCCCC
Q 037807 145 AIIIDAFDPI 154 (299)
Q Consensus 145 vIi~D~~~~~ 154 (299)
+|+++++...
T Consensus 192 livcNPPf~~ 201 (321)
T PRK11727 192 ATLCNPPFHA 201 (321)
T ss_pred EEEeCCCCcC
Confidence 9999987543
No 170
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.64 E-value=1.8e-07 Score=80.79 Aligned_cols=106 Identities=22% Similarity=0.264 Sum_probs=87.2
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.+..+||.+|.|-|.+...+-+.++. +-..+|..|.|.+..|++-.. +..+|.+..+-..+.+...+++.||-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWR-----EKENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccc-----cccceEEEecchHhhhccccccCccee
Confidence 47889999999999999988888765 458899999999999887543 456888888887777777778889999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
..|.+.+.... +.+|++.+.+.|||+|++..-
T Consensus 174 ~yDTy~e~yEd----l~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 174 YYDTYSELYED----LRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred EeechhhHHHH----HHHHHHHHhhhcCCCceEEEe
Confidence 99988653211 378999999999999999864
No 171
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.61 E-value=1.6e-07 Score=81.05 Aligned_cols=92 Identities=20% Similarity=0.155 Sum_probs=65.4
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
...+|||||||+|.++..+++... .++++||+++++++.+++ .+++++.+|+.+.+...++++||+|+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~i~~a~~-----------~~~~~~~~d~~~~l~~~~~~sfD~Vi 80 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQ-VRGYGIEIDQDGVLACVA-----------RGVNVIQGDLDEGLEAFPDKSFDYVI 80 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccC-CcEEEEeCCHHHHHHHHH-----------cCCeEEEEEhhhcccccCCCCcCEEE
Confidence 457999999999999998876543 468999999999998864 14678888887644322357899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCC
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRP 175 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~Lkp 175 (299)
+...-..... ...+++++.+.+++
T Consensus 81 ~~~~l~~~~d----~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 81 LSQTLQATRN----PEEILDEMLRVGRH 104 (194)
T ss_pred EhhHhHcCcC----HHHHHHHHHHhCCe
Confidence 8643221111 25677777776654
No 172
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.60 E-value=5.4e-07 Score=75.00 Aligned_cols=107 Identities=20% Similarity=0.180 Sum_probs=83.4
Q ss_pred CCCeEEEEeccccHHHHHHHhcC-CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHH---HHHhcCCCCc
Q 037807 68 NPKKVLLIGGGDGGILREISRHA-SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSE---YLKTVQSGTF 143 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~---~l~~~~~~~f 143 (299)
+...||++|.|||.+++.++++. ..+.++.+|.|++.+....+.++ .++++.+|+++ .+.+.....|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p---------~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP---------GVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC---------CccccccchhhHHHHHhhcCCCee
Confidence 46789999999999999999863 34789999999999998888764 56699999865 4555556789
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
|.||+..+--.-|. -.+.+.++.+..+|..||.++.-..+
T Consensus 119 D~viS~lPll~~P~--~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 119 DSVISGLPLLNFPM--HRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeEEeccccccCcH--HHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 99998765432221 12478899999999999999875433
No 173
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.60 E-value=3.9e-07 Score=82.34 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=61.9
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+..+|||||||+|.++..+++.. .+|++||+|+.+++.+++.+.. .++++++.+|+.++- -..||.|+
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~----~~~~d~Vv 96 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD----LPEFNKVV 96 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC----chhceEEE
Confidence 46789999999999999999874 5899999999999999988753 368999999987642 23589999
Q ss_pred EcCCCC
Q 037807 148 IDAFDP 153 (299)
Q Consensus 148 ~D~~~~ 153 (299)
.+.+..
T Consensus 97 ~NlPy~ 102 (258)
T PRK14896 97 SNLPYQ 102 (258)
T ss_pred EcCCcc
Confidence 987754
No 174
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.59 E-value=1.5e-07 Score=80.05 Aligned_cols=109 Identities=17% Similarity=0.293 Sum_probs=68.2
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHH--HhcCCCCcc
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYL--KTVQSGTFD 144 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l--~~~~~~~fD 144 (299)
.++++||+||||+|..+..+++..+..+|++-|.++ +++.++.+...+.. ...+++++..-|.-+-+ ......+||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCcccccccccccCC
Confidence 367899999999999999998875568999999999 99999998876521 12467888877653322 112246899
Q ss_pred EEEE-cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 145 AIII-DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 145 vIi~-D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+|+. |..... . ....+.+-+.+.|+++|.+++.
T Consensus 122 ~IlasDv~Y~~----~-~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 122 VILASDVLYDE----E-LFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp EEEEES--S-G----G-GHHHHHHHHHHHBTT-TTEEEE
T ss_pred EEEEecccchH----H-HHHHHHHHHHHHhCCCCEEEEE
Confidence 9997 543321 1 1277889999999999986653
No 175
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.5e-07 Score=81.06 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=87.3
Q ss_pred hhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCC--ccEEEEEECCHHHHHHHHhhchhhh------cCCCCCC
Q 037807 52 CAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHAS--VEQIHICEIDTMLINVYKEYFPEIA------IGYEDSR 123 (299)
Q Consensus 52 ~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~--~~~v~~VEid~~vi~~a~~~~~~~~------~~~~~~r 123 (299)
..|.+.|..+--.. .+..+.|++|.|+|.++..+++.-+ ...+++||.-+++++.+++++...- ..++..+
T Consensus 67 ~mha~~le~L~~~L-~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 67 HMHATALEYLDDHL-QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHHHHHhh-ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 35666655443111 3467899999999999888775322 2334999999999999999987652 2356789
Q ss_pred EEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 124 VILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 124 v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+.++++|++..-.+ ..+||.|.+-+..+ +.-+.+...|++||.+++-
T Consensus 146 l~ivvGDgr~g~~e--~a~YDaIhvGAaa~----------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAE--QAPYDAIHVGAAAS----------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred eEEEeCCccccCCc--cCCcceEEEccCcc----------ccHHHHHHhhccCCeEEEe
Confidence 99999999986654 58999999975553 3456778889999999883
No 176
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.58 E-value=1.4e-06 Score=84.88 Aligned_cols=113 Identities=24% Similarity=0.311 Sum_probs=86.5
Q ss_pred CCCCeEEEEeccccHHHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGDGGILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.+..+|||+++|.|+=+.+++.. .+...|+++|+++.-++..++++... .-.++.+...|+..+.... .+.||.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~----G~~nv~v~~~D~~~~~~~~-~~~fD~ 186 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC----GVSNVALTHFDGRVFGAAL-PETFDA 186 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEeCchhhhhhhc-hhhcCe
Confidence 35689999999999999998864 33458999999999999999998775 2357899999998765443 567999
Q ss_pred EEEcCCCCC-CC----CCCC--C-----------cHHHHHHHHHhcCCCcEEEEecC
Q 037807 146 IIIDAFDPI-RP----GHDL--F-----------EGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 146 Ii~D~~~~~-~~----~~~l--~-----------t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
|++|++... |. +... + ..+++..+.+.|||||+||-.+.
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 999997642 11 1111 1 25788888999999999976553
No 177
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.58 E-value=1.5e-07 Score=91.34 Aligned_cols=106 Identities=16% Similarity=0.209 Sum_probs=74.7
Q ss_pred CCeEEEEeccccHHHHHHHhc----CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCcc
Q 037807 69 PKKVLLIGGGDGGILREISRH----ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fD 144 (299)
.+.|||||+|+|-++..+++. ....+|.+||.++..+...++..... ++ +.+|+++.+|.+++-. +++.|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n--~w-~~~V~vi~~d~r~v~l---pekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN--GW-GDKVTVIHGDMREVEL---PEKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT--TT-TTTEEEEES-TTTSCH---SS-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc--CC-CCeEEEEeCcccCCCC---CCcee
Confidence 467999999999998776553 34679999999998887776543322 22 4689999999988743 57999
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+||+..-...+..+ ...|.+....+.|||||+++=+
T Consensus 261 IIVSElLGsfg~nE--l~pE~Lda~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 261 IIVSELLGSFGDNE--LSPECLDAADRFLKPDGIMIPS 296 (448)
T ss_dssp EEEE---BTTBTTT--SHHHHHHHGGGGEEEEEEEESS
T ss_pred EEEEeccCCccccc--cCHHHHHHHHhhcCCCCEEeCc
Confidence 99997665433333 3478888999999999999843
No 178
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.57 E-value=3.5e-07 Score=80.89 Aligned_cols=111 Identities=10% Similarity=-0.010 Sum_probs=77.8
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhh--------hcCCCCCCEEEEEccHHHHHHh-
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEI--------AIGYEDSRVILHVCDGSEYLKT- 137 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~--------~~~~~~~rv~v~~~D~~~~l~~- 137 (299)
++..+||+.|||.|.-+.+|+.+. -+|++||+++..++.+.+..... ...+...+++++++|.+++-..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 345799999999999999999874 46999999999999886632110 0012345899999999886321
Q ss_pred cCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 138 VQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 138 ~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
...++||+|+--..-..-++ . ....+.+.+.+.|+|||.+++
T Consensus 120 ~~~~~fD~VyDra~~~Alpp-~-~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPN-D-LRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred cccCCcCeeeeehhHhcCCH-H-HHHHHHHHHHHHhCCCcEEEE
Confidence 11358999875332221111 1 126788999999999998765
No 179
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.56 E-value=3.7e-07 Score=83.13 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=60.4
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.+..+|||||||+|.++..++++. .+|+++|+|+.+++.+++.+. +++++++.+|+.++-.. +-.+|.|
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-------~~~v~~i~~D~~~~~~~--~~~~~~v 109 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-------EDNLTIIEGDALKVDLS--ELQPLKV 109 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-------cCceEEEEChhhcCCHH--HcCcceE
Confidence 356789999999999999999885 389999999999999998663 36899999998875321 1115889
Q ss_pred EEcCCCC
Q 037807 147 IIDAFDP 153 (299)
Q Consensus 147 i~D~~~~ 153 (299)
+.+++..
T Consensus 110 v~NlPY~ 116 (272)
T PRK00274 110 VANLPYN 116 (272)
T ss_pred EEeCCcc
Confidence 9887543
No 180
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.55 E-value=3.9e-07 Score=79.08 Aligned_cols=123 Identities=21% Similarity=0.166 Sum_probs=81.4
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEE
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIII 148 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~ 148 (299)
+.=|||||||+|..+..+... + -..++|||+|.|++.|.+ .+. .-.++.+|.-+-+.- ++++||.+|+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~-G-h~wiGvDiSpsML~~a~~--~e~-------egdlil~DMG~Glpf-rpGtFDg~IS 118 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS-G-HQWIGVDISPSMLEQAVE--REL-------EGDLILCDMGEGLPF-RPGTFDGVIS 118 (270)
T ss_pred CcEEEEeccCCCcchheeccC-C-ceEEeecCCHHHHHHHHH--hhh-------hcCeeeeecCCCCCC-CCCccceEEE
Confidence 667999999999888877654 3 578999999999999997 332 134666776555543 3789999987
Q ss_pred cCCC-------CCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHH-HHHHHhhhcC
Q 037807 149 DAFD-------PIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQH-LIDDCHRIFK 205 (299)
Q Consensus 149 D~~~-------~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~-~~~~l~~~F~ 205 (299)
-+.- +....+..--..||..++.+|++|+..++|...- ..+.... +.+.+++-|.
T Consensus 119 ISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe--n~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 119 ISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE--NEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc--chHHHHHHHHHHHhhccC
Confidence 3321 1111111112568999999999999999975221 1122222 3346666674
No 181
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.54 E-value=1e-05 Score=75.53 Aligned_cols=175 Identities=16% Similarity=0.157 Sum_probs=115.8
Q ss_pred CceEEEEc-CeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhc
Q 037807 34 YGKVFVLD-GALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYF 112 (299)
Q Consensus 34 ~g~~l~ld-g~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~ 112 (299)
.|-.+.+| -.++++.+....-..++.. ......|||.-+|-|.++..++++... +|.++||||..++..++++
T Consensus 158 ~G~~f~vD~~Kv~Fsprl~~ER~Rva~~-----v~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi 231 (341)
T COG2520 158 NGCRFKVDVAKVYFSPRLSTERARVAEL-----VKEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENI 231 (341)
T ss_pred CCEEEEEchHHeEECCCchHHHHHHHhh-----hcCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHH
Confidence 35555566 3355555543222222221 235889999999999999999998644 4999999999999999998
Q ss_pred hhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccch--
Q 037807 113 PEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQ-- 190 (299)
Q Consensus 113 ~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~-- 190 (299)
..+.. ..+++.+.+|++++..+. ..+|-||+..+.. +.+|+....+.++++|++-.....+-...
T Consensus 232 ~LN~v---~~~v~~i~gD~rev~~~~--~~aDrIim~~p~~--------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~ 298 (341)
T COG2520 232 RLNKV---EGRVEPILGDAREVAPEL--GVADRIIMGLPKS--------AHEFLPLALELLKDGGIIHYYEFVPEDDIEE 298 (341)
T ss_pred HhcCc---cceeeEEeccHHHhhhcc--ccCCEEEeCCCCc--------chhhHHHHHHHhhcCcEEEEEeccchhhccc
Confidence 87632 346999999999998753 7899999987653 47899999999999999987653322111
Q ss_pred HHHHHHHHHHhhhcCCceeeeEEeecccCCcceeEEe
Q 037807 191 FSVQHLIDDCHRIFKGSASYAWTTVPTYPSGVIGFML 227 (299)
Q Consensus 191 ~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~w~~~~ 227 (299)
..+..+.....+.-........-.+-+|..+.|-+.+
T Consensus 299 ~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v~hv~v 335 (341)
T COG2520 299 RPEKRIKSAARKGGYKVEVLKVRRVKSYSPGVYHVVV 335 (341)
T ss_pred chHHHHHHHHhhccCcceEEEEEEecccCCCeeEEEE
Confidence 0122332222222001111223457778777765443
No 182
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.52 E-value=3e-07 Score=77.14 Aligned_cols=77 Identities=21% Similarity=0.199 Sum_probs=57.0
Q ss_pred eEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCC-ccEEEEc
Q 037807 71 KVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGT-FDAIIID 149 (299)
Q Consensus 71 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~-fDvIi~D 149 (299)
.|+|+.||.|+.+..+++.. .+|++||+|+..++.|+.+..-.+. ..+++++.+|..+.+++..... +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv---~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGV---ADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT----GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCC---CCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 58999999999999999985 6899999999999999999776532 4689999999999987652222 8999998
Q ss_pred CCC
Q 037807 150 AFD 152 (299)
Q Consensus 150 ~~~ 152 (299)
++-
T Consensus 77 PPW 79 (163)
T PF09445_consen 77 PPW 79 (163)
T ss_dssp --B
T ss_pred CCC
Confidence 754
No 183
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=2.3e-06 Score=72.22 Aligned_cols=123 Identities=14% Similarity=0.137 Sum_probs=88.8
Q ss_pred CCCeEEEEeccccHHHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGDGGILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+++=+|+||||+|.+...+.+. .+..-..+.||+|...+..++-...+ .-++.++..|...-++ +++.|++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-----~~~~~~V~tdl~~~l~---~~~VDvL 114 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-----RVHIDVVRTDLLSGLR---NESVDVL 114 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-----CCccceeehhHHhhhc---cCCccEE
Confidence 4778999999999999888763 34456789999999999988876543 4568899999998887 4899999
Q ss_pred EEcCCCCCCCC-----------------CCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhh
Q 037807 147 IIDAFDPIRPG-----------------HDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHR 202 (299)
Q Consensus 147 i~D~~~~~~~~-----------------~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~ 202 (299)
+.+++.-..+. ..-.+..++..+-..|.|.|++.+.. ......+++++.++.
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~----~~~N~p~ei~k~l~~ 183 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA----LRANKPKEILKILEK 183 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee----hhhcCHHHHHHHHhh
Confidence 99875421111 11123567778889999999998743 233334556665543
No 184
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.49 E-value=8.1e-07 Score=79.25 Aligned_cols=93 Identities=17% Similarity=0.284 Sum_probs=68.1
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+..++||||+|+|.++..++.+. ++|.+-|+++.|....++ ...+++-.| ++- +. +.+||+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~-----------kg~~vl~~~--~w~-~~-~~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSK-----------KGFTVLDID--DWQ-QT-DFKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHh-----------CCCeEEehh--hhh-cc-CCceEEEe
Confidence 46789999999999999998875 689999999999775544 234444333 332 23 57899999
Q ss_pred E-cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 148 I-DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 148 ~-D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+ +.-|....+ ...++.+++.|+|+|++++-
T Consensus 157 cLNvLDRc~~P-----~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 157 CLNVLDRCDRP-----LTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ehhhhhccCCH-----HHHHHHHHHHhCCCCEEEEE
Confidence 8 333321111 67899999999999998863
No 185
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=7.2e-07 Score=80.12 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=73.5
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEE
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIII 148 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~ 148 (299)
...||+||.|.|.++..+++.. .+|++||+|+.+++..++.+.. ..+++++.+|+.++-... -..++.|+.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~d~~~-l~~~~~vVa 101 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKFDFPS-LAQPYKVVA 101 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcCcchh-hcCCCEEEE
Confidence 6789999999999999999985 5799999999999999998752 469999999998763211 016899999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHHhcCC-CcEEEEe
Q 037807 149 DAFDPIRPGHDLFEGPFFELVAKALRP-GGAMCIQ 182 (299)
Q Consensus 149 D~~~~~~~~~~l~t~ef~~~~~~~Lkp-gGvlv~~ 182 (299)
+.+...+ |+-.++.+...... ..++++|
T Consensus 102 NlPY~Is------spii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 102 NLPYNIS------SPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred cCCCccc------HHHHHHHHhccCccceEEEEeH
Confidence 8877643 23344444444443 4455554
No 186
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.45 E-value=2.1e-06 Score=77.32 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=60.2
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCcc--
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFD-- 144 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fD-- 144 (299)
.+..+|||||||+|.+++.+++.. ..|+++|+|+.+++.+++.+.. .++++++.+|+.++.. ..||
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~~~~----~~~d~~ 95 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALKVDL----PDFPKQ 95 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhcCCh----hHcCCc
Confidence 356899999999999999999875 4699999999999999987642 4689999999876432 2456
Q ss_pred -EEEEcCCCC
Q 037807 145 -AIIIDAFDP 153 (299)
Q Consensus 145 -vIi~D~~~~ 153 (299)
+|+.+.+..
T Consensus 96 ~~vvsNlPy~ 105 (253)
T TIGR00755 96 LKVVSNLPYN 105 (253)
T ss_pred ceEEEcCChh
Confidence 888776543
No 187
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.44 E-value=3.5e-07 Score=80.65 Aligned_cols=107 Identities=21% Similarity=0.218 Sum_probs=75.7
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchh-hh-------cCCCCCCEEEEEccHHHHHHhc
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPE-IA-------IGYEDSRVILHVCDGSEYLKTV 138 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-~~-------~~~~~~rv~v~~~D~~~~l~~~ 138 (299)
+.+.+||+.|||.|.-+..++++. -+|++||+++..++.+.+.... .. ......+++++.+|.+++-...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 456799999999999999999884 5899999999999998442211 10 0124568999999998865432
Q ss_pred CCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcE
Q 037807 139 QSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGA 178 (299)
Q Consensus 139 ~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGv 178 (299)
.++||+|+=-.+-..-++. .-..+.+.+.+.|+|||.
T Consensus 114 -~g~fD~iyDr~~l~Alpp~--~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 114 -VGKFDLIYDRTFLCALPPE--MRERYAQQLASLLKPGGR 150 (218)
T ss_dssp -HHSEEEEEECSSTTTS-GG--GHHHHHHHHHHCEEEEEE
T ss_pred -cCCceEEEEecccccCCHH--HHHHHHHHHHHHhCCCCc
Confidence 3589999953332222211 237788999999999998
No 188
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=6.2e-06 Score=79.67 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=93.5
Q ss_pred hHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHH
Q 037807 53 AYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGS 132 (299)
Q Consensus 53 ~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~ 132 (299)
.|..++.++.. ....+|||+=||.|.++..+++. +.+|++||++++.++.|+++...++ -.+++++.+|+.
T Consensus 281 l~~~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~----i~N~~f~~~~ae 351 (432)
T COG2265 281 LYETALEWLEL---AGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANG----IDNVEFIAGDAE 351 (432)
T ss_pred HHHHHHHHHhh---cCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEeCCHH
Confidence 34444444332 24578999999999999999976 4799999999999999999988762 345999999999
Q ss_pred HHHHhc-CCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhh
Q 037807 133 EYLKTV-QSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHR 202 (299)
Q Consensus 133 ~~l~~~-~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~ 202 (299)
++.... ....+|+|++|++-.... .++.+.+. .++|..++-+.+ ++..+.+-++.|.+
T Consensus 352 ~~~~~~~~~~~~d~VvvDPPR~G~~------~~~lk~l~-~~~p~~IvYVSC-----NP~TlaRDl~~L~~ 410 (432)
T COG2265 352 EFTPAWWEGYKPDVVVVDPPRAGAD------REVLKQLA-KLKPKRIVYVSC-----NPATLARDLAILAS 410 (432)
T ss_pred HHhhhccccCCCCEEEECCCCCCCC------HHHHHHHH-hcCCCcEEEEeC-----CHHHHHHHHHHHHh
Confidence 998865 135789999998764321 56666554 577778887754 23344444454443
No 189
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.44 E-value=1.4e-06 Score=80.77 Aligned_cols=121 Identities=20% Similarity=0.189 Sum_probs=90.5
Q ss_pred hhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEc-c
Q 037807 52 CAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVC-D 130 (299)
Q Consensus 52 ~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~-D 130 (299)
..+...|+.++.. .....|||==||||+++.|+.-.. .++++.|+|..|++-|+.|+...+ -....+... |
T Consensus 183 P~lAR~mVNLa~v--~~G~~vlDPFcGTGgiLiEagl~G--~~viG~Did~~mv~gak~Nl~~y~----i~~~~~~~~~D 254 (347)
T COG1041 183 PRLARAMVNLARV--KRGELVLDPFCGTGGILIEAGLMG--ARVIGSDIDERMVRGAKINLEYYG----IEDYPVLKVLD 254 (347)
T ss_pred HHHHHHHHHHhcc--ccCCEeecCcCCccHHHHhhhhcC--ceEeecchHHHHHhhhhhhhhhhC----cCceeEEEecc
Confidence 3456667766543 456799999999999999987663 579999999999999999998762 234555555 8
Q ss_pred HHHHHHhcCCCCccEEEEcCCCCCCCC------CCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 131 GSEYLKTVQSGTFDAIIIDAFDPIRPG------HDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 131 ~~~~l~~~~~~~fDvIi~D~~~~~~~~------~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+...- .+++++|.|++|++...... ..| ..++++.+.++|++||.+++-+
T Consensus 255 a~~lp--l~~~~vdaIatDPPYGrst~~~~~~l~~L-y~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 255 ATNLP--LRDNSVDAIATDPPYGRSTKIKGEGLDEL-YEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred cccCC--CCCCccceEEecCCCCcccccccccHHHH-HHHHHHHHHHHhhcCcEEEEec
Confidence 76543 33457999999998765331 122 3788999999999999999854
No 190
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.36 E-value=1.3e-06 Score=74.74 Aligned_cols=110 Identities=21% Similarity=0.223 Sum_probs=75.0
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCcc---------EEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHh
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVE---------QIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKT 137 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~---------~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~ 137 (299)
.+...|||--||+|+++.|.+...... ++.++|+|+++++.|++++...+ . ...+.+...|+.++-.
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag--~-~~~i~~~~~D~~~l~~- 102 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG--V-EDYIDFIQWDARELPL- 102 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----CGGEEEEE--GGGGGG-
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc--c-CCceEEEecchhhccc-
Confidence 345789999999999999987532222 38899999999999999987642 1 3468999999988752
Q ss_pred cCCCCccEEEEcCCCCCCCC-----CCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 138 VQSGTFDAIIIDAFDPIRPG-----HDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 138 ~~~~~fDvIi~D~~~~~~~~-----~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
..+.+|+||+|++...... ..|| ..|++.+++.|++..++++.
T Consensus 103 -~~~~~d~IvtnPPyG~r~~~~~~~~~ly-~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 103 -PDGSVDAIVTNPPYGRRLGSKKDLEKLY-RQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp -TTSBSCEEEEE--STTSHCHHHHHHHHH-HHHHHHHHCHSTTCEEEEEE
T ss_pred -ccCCCCEEEECcchhhhccCHHHHHHHH-HHHHHHHHHHCCCCEEEEEE
Confidence 2578999999987754221 1222 56778888999995555553
No 191
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.34 E-value=8.5e-07 Score=77.42 Aligned_cols=99 Identities=19% Similarity=0.239 Sum_probs=77.8
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEE--EEEccHHHHHHhcCCCCccE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVI--LHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~--v~~~D~~~~l~~~~~~~fDv 145 (299)
....+++||||-|.+.+.+.+.. +++++++|.+..|++.|++- +||.++ ...+| .+++. ..++++|+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~--------qdp~i~~~~~v~D-EE~Ld-f~ens~DL 140 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA--------QDPSIETSYFVGD-EEFLD-FKENSVDL 140 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc--------CCCceEEEEEecc-hhccc-ccccchhh
Confidence 45679999999999999998874 89999999999999999874 345544 45566 44554 33789999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
||....-++...- +..+..|+..|||+|+|+.
T Consensus 141 iisSlslHW~NdL----Pg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 141 IISSLSLHWTNDL----PGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhhhhhhhccC----chHHHHHHHhcCCCccchh
Confidence 9987766653321 4568899999999999996
No 192
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.32 E-value=1.3e-06 Score=81.60 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=72.7
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCC------CCCEEEEEccHHH-HHHh-cC
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYE------DSRVILHVCDGSE-YLKT-VQ 139 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~------~~rv~v~~~D~~~-~l~~-~~ 139 (299)
+..+|||||||-|+-+.-..+. .+..++++||+...++.|++.......... +-...++.+|... -+.. ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 5689999999988866666555 478999999999999999987733321100 1235677888753 1221 12
Q ss_pred C--CCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 140 S--GTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 140 ~--~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
. .+||+|-+-..-+-.....-....+++.+.+.|+|||+|+..+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 2 5899999854333211111112669999999999999999744
No 193
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.28 E-value=4e-06 Score=83.22 Aligned_cols=131 Identities=16% Similarity=0.202 Sum_probs=84.6
Q ss_pred CCCeEEEEeccccHHHHHHHhcCC--------ccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHH---
Q 037807 68 NPKKVLLIGGGDGGILREISRHAS--------VEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLK--- 136 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~--------~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~--- 136 (299)
...+|||.|||+|+++..++++.. ...++++|+|+..++.++..+.... ....++..+|......
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~----~~~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA----LLEINVINFNSLSYVLLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC----CCCceeeeccccccccccc
Confidence 456899999999999998876321 2578999999999999999876542 2345667666543211
Q ss_pred hcCCCCccEEEEcCCCCCCC-CC------------------------------------------CCCcHHHHHHHHHhc
Q 037807 137 TVQSGTFDAIIIDAFDPIRP-GH------------------------------------------DLFEGPFFELVAKAL 173 (299)
Q Consensus 137 ~~~~~~fDvIi~D~~~~~~~-~~------------------------------------------~l~t~ef~~~~~~~L 173 (299)
....++||+||.++|..... .. .+|..=|++.+.+.|
T Consensus 107 ~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL 186 (524)
T TIGR02987 107 ESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIA 186 (524)
T ss_pred ccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhc
Confidence 11135899999988754211 00 011112346788999
Q ss_pred CCCcEEEEecCCcccchHHHHHHHHHHhh
Q 037807 174 RPGGAMCIQAESLWFQQFSVQHLIDDCHR 202 (299)
Q Consensus 174 kpgGvlv~~~~s~~~~~~~~~~~~~~l~~ 202 (299)
++||.+.+-..+.+......+.+.+.+-+
T Consensus 187 ~~~G~~~~I~P~s~l~~~~~~~lR~~ll~ 215 (524)
T TIGR02987 187 NKNGYVSIISPASWLGDKTGENLREYIFN 215 (524)
T ss_pred CCCCEEEEEEChHHhcCccHHHHHHHHHh
Confidence 99999887655555554444444444433
No 194
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.27 E-value=1.6e-05 Score=75.05 Aligned_cols=129 Identities=18% Similarity=0.173 Sum_probs=78.0
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc----------
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV---------- 138 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~---------- 138 (299)
+.+|||+-||.|.++..+++.. .+|++||+++.+++.|+++...+ .-.+++++.+++.++....
T Consensus 197 ~~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N----~i~n~~f~~~~~~~~~~~~~~~r~~~~~~ 270 (352)
T PF05958_consen 197 KGDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLN----GIDNVEFIRGDAEDFAKALAKAREFNRLK 270 (352)
T ss_dssp TTEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHT----T--SEEEEE--SHHCCCHHCCS-GGTTGG
T ss_pred CCcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHc----CCCcceEEEeeccchhHHHHhhHHHHhhh
Confidence 3489999999999999998874 78999999999999999998876 2357999998876653211
Q ss_pred ----CCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCCceeeeEEe
Q 037807 139 ----QSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKGSASYAWTT 214 (299)
Q Consensus 139 ----~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~ 214 (299)
....+|+|++|+|-... ...+.+.+.+ + .=++-+.+ ++..+.+=++.|.+.| .... ...
T Consensus 271 ~~~~~~~~~d~vilDPPR~G~------~~~~~~~~~~-~--~~ivYvSC-----nP~tlaRDl~~L~~~y-~~~~--v~~ 333 (352)
T PF05958_consen 271 GIDLKSFKFDAVILDPPRAGL------DEKVIELIKK-L--KRIVYVSC-----NPATLARDLKILKEGY-KLEK--VQP 333 (352)
T ss_dssp GS-GGCTTESEEEE---TT-S------CHHHHHHHHH-S--SEEEEEES------HHHHHHHHHHHHCCE-EEEE--EEE
T ss_pred hhhhhhcCCCEEEEcCCCCCc------hHHHHHHHhc-C--CeEEEEEC-----CHHHHHHHHHHHhhcC-EEEE--EEE
Confidence 12368999999876422 2556666543 3 33444432 2344444555565555 2221 234
Q ss_pred ecccCC
Q 037807 215 VPTYPS 220 (299)
Q Consensus 215 vP~~~~ 220 (299)
+-.||.
T Consensus 334 ~DmFP~ 339 (352)
T PF05958_consen 334 VDMFPQ 339 (352)
T ss_dssp E-SSTT
T ss_pred eecCCC
Confidence 556763
No 195
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=98.24 E-value=2.9e-06 Score=68.18 Aligned_cols=93 Identities=19% Similarity=0.389 Sum_probs=62.7
Q ss_pred CCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHh
Q 037807 122 SRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCH 201 (299)
Q Consensus 122 ~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~ 201 (299)
-+++++.+|+++.+++. ...+|+|+.|.+.|... +.+++.++|+.+++++++||++++.+.. ..+.+.|.
T Consensus 31 v~L~L~~gDa~~~l~~l-~~~~Da~ylDgFsP~~n-PelWs~e~~~~l~~~~~~~~~l~Tys~a--------~~Vr~~L~ 100 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQL-DARFDAWYLDGFSPAKN-PELWSEELFKKLARLSKPGGTLATYSSA--------GAVRRALQ 100 (124)
T ss_dssp EEEEEEES-HHHHHHHB--T-EEEEEE-SS-TTTS-GGGSSHHHHHHHHHHEEEEEEEEES--B--------HHHHHHHH
T ss_pred EEEEEEEcHHHHHHHhC-cccCCEEEecCCCCcCC-cccCCHHHHHHHHHHhCCCcEEEEeech--------HHHHHHHH
Confidence 45789999999999987 68999999999988544 4599999999999999999999985422 12444554
Q ss_pred hhcCCceeeeEEeecccCCcceeEEeccc
Q 037807 202 RIFKGSASYAWTTVPTYPSGVIGFMLCST 230 (299)
Q Consensus 202 ~~F~~~v~~~~~~vP~~~~g~w~~~~ask 230 (299)
+. .+.....|.|+ +-...+.|+|
T Consensus 101 ~a-----GF~v~~~~g~g-~Kr~~~~a~~ 123 (124)
T PF05430_consen 101 QA-----GFEVEKVPGFG-RKREMLRAVK 123 (124)
T ss_dssp HC-----TEEEEEEE-ST-TSSEEEEEEC
T ss_pred Hc-----CCEEEEcCCCC-CcchheEEEc
Confidence 33 12234577774 4455677665
No 196
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.21 E-value=1e-05 Score=74.43 Aligned_cols=77 Identities=19% Similarity=0.144 Sum_probs=63.6
Q ss_pred CCCeEEEEeccccHHHHHHHhcC-CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCC--CCcc
Q 037807 68 NPKKVLLIGGGDGGILREISRHA-SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQS--GTFD 144 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~--~~fD 144 (299)
+...++|.+||.|+.+..+++.. +..+|+++|.|+++++.+++.+.. ..|++++++|..++...... .++|
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f~~l~~~l~~~~~~vD 92 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNFSNLKEVLAEGLGKVD 92 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCHHHHHHHHHcCCCccC
Confidence 34689999999999999999864 357899999999999999987642 25899999999988654422 2799
Q ss_pred EEEEcC
Q 037807 145 AIIIDA 150 (299)
Q Consensus 145 vIi~D~ 150 (299)
.|++|+
T Consensus 93 gIl~DL 98 (296)
T PRK00050 93 GILLDL 98 (296)
T ss_pred EEEECC
Confidence 999976
No 197
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.21 E-value=1.3e-05 Score=71.02 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=46.4
Q ss_pred EEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHH
Q 037807 38 FVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINV 107 (299)
Q Consensus 38 l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ 107 (299)
+.+++...+-.+..+-..+++.++... .+.+.|||+|||+|+++..++++ +..+|++||+++.++..
T Consensus 47 I~v~~~~~~vsr~~~kL~~~l~~~~~~--~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 47 IELLQNPLFVSRGGEKLKEALEEFNID--VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred EeccCccchhhhhHHHHHHHHHhcCCC--CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 444443223333334445666655432 35678999999999999999987 47899999999987764
No 198
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.20 E-value=3.6e-06 Score=70.57 Aligned_cols=81 Identities=12% Similarity=-0.018 Sum_probs=58.0
Q ss_pred EEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCC
Q 037807 96 HICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRP 175 (299)
Q Consensus 96 ~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~Lkp 175 (299)
++||++++|++.|++..+..... ..++++++.+|+.+... ++++||+|++...-..-+. ..+++++++++|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~lp~--~~~~fD~v~~~~~l~~~~d----~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDLPF--DDCEFDAVTMGYGLRNVVD----RLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhCCC--CCCCeeEEEecchhhcCCC----HHHHHHHHHHHcCc
Confidence 48999999999998765432100 12479999999887532 3678999998542221111 27899999999999
Q ss_pred CcEEEEec
Q 037807 176 GGAMCIQA 183 (299)
Q Consensus 176 gGvlv~~~ 183 (299)
||.+++..
T Consensus 74 GG~l~i~d 81 (160)
T PLN02232 74 GSRVSILD 81 (160)
T ss_pred CeEEEEEE
Confidence 99998753
No 199
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.19 E-value=7.9e-06 Score=74.73 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=79.7
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCC--CCCEEEEEccHHHHH-Hhc---CC
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYE--DSRVILHVCDGSEYL-KTV---QS 140 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~--~~rv~v~~~D~~~~l-~~~---~~ 140 (299)
++...+|++|||-|+-++-..+. ++..++++||.+..++.|++....+...+. .=.+.++.+|...-. .+. .+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 45678999999999988887765 578999999999999999998766532111 013678888875422 111 23
Q ss_pred CCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 141 GTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 141 ~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
.+||+|-+-..-+......--..-+++++.++|+|||+|+-..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 4599998754333211100011557899999999999999754
No 200
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.18 E-value=4.3e-06 Score=70.98 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=83.6
Q ss_pred hhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccH
Q 037807 52 CAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDG 131 (299)
Q Consensus 52 ~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~ 131 (299)
+.+.++++.++ ...+.|+|.|+|.++.-.++. .++|.++|.||...++|++++... .+.+++++.+|+
T Consensus 22 avF~~ai~~va------~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~----g~~n~evv~gDA 89 (252)
T COG4076 22 AVFTSAIAEVA------EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVP----GDVNWEVVVGDA 89 (252)
T ss_pred HHHHHHHHHHh------hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCC----CCcceEEEeccc
Confidence 44555655543 256899999999988877766 589999999999999999997544 367999999999
Q ss_pred HHHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 132 SEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 132 ~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+.|-- +..|+||+..-|..-..+. ....+..+.+-|+.++.++=|
T Consensus 90 ~~y~f----e~ADvvicEmlDTaLi~E~--qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 90 RDYDF----ENADVVICEMLDTALIEEK--QVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred ccccc----cccceeHHHHhhHHhhccc--ccHHHHHHHHHhhcCCccccH
Confidence 98743 4679999966553211111 144677777788999988743
No 201
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.16 E-value=1.3e-05 Score=81.73 Aligned_cols=114 Identities=19% Similarity=0.265 Sum_probs=79.9
Q ss_pred CCCeEEEEeccccHHHHHHHhc--------C----CccEEEEEECCHH---HHHHHHhhchhh--------------hc-
Q 037807 68 NPKKVLLIGGGDGGILREISRH--------A----SVEQIHICEIDTM---LINVYKEYFPEI--------------AI- 117 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~--------~----~~~~v~~VEid~~---vi~~a~~~~~~~--------------~~- 117 (299)
..-+|||+|.|+|.......+. + ..-+++.+|.+|- -+..+-+.++.. ..
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3478999999999976655431 1 1347889997652 222222111110 00
Q ss_pred ----CCCCC--CEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 118 ----GYEDS--RVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 118 ----~~~~~--rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
.+++. +++++.+|+++.+.+. ..++|+|+.|.+.|... +.+++.++|+.+++.++|||++++.+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~-~~~~d~~~lD~FsP~~n-p~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQL-DARADAWFLDGFAPAKN-PDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhc-cccccEEEeCCCCCccC-hhhccHHHHHHHHHHhCCCCEEEEee
Confidence 12223 5668999999999877 56799999999998543 46899999999999999999999754
No 202
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.15 E-value=1.1e-05 Score=68.76 Aligned_cols=134 Identities=16% Similarity=0.213 Sum_probs=76.1
Q ss_pred HHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcC-CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccH--
Q 037807 55 QEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHA-SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDG-- 131 (299)
Q Consensus 55 ~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~-- 131 (299)
.|++....+....+..+|||||++.|+.+..++++. ...+|++||+.+. .. .+.+..+.+|.
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~---------~~~~~~i~~d~~~ 74 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DP---------LQNVSFIQGDITN 74 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS----------TTEEBTTGGGEE
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc------cc---------ccceeeeecccch
Confidence 566665554433356899999999999999999875 4689999999887 11 12333333332
Q ss_pred ---HHHHHhc---CCCCccEEEEcCCCCCCCCC---CCC----cHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHH
Q 037807 132 ---SEYLKTV---QSGTFDAIIIDAFDPIRPGH---DLF----EGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLID 198 (299)
Q Consensus 132 ---~~~l~~~---~~~~fDvIi~D~~~~~~~~~---~l~----t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~ 198 (299)
.+.+.+. ..+++|+|++|......... ... ....+..+.+.|++||.+++..-. .... ..++.
T Consensus 75 ~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~---~~~~-~~~~~ 150 (181)
T PF01728_consen 75 PENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK---GPEI-EELIY 150 (181)
T ss_dssp EEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS---STTS-HHHHH
T ss_pred hhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc---CccH-HHHHH
Confidence 2223321 13689999999843321110 000 122344556789999998875422 2222 36667
Q ss_pred HHhhhcCCce
Q 037807 199 DCHRIFKGSA 208 (299)
Q Consensus 199 ~l~~~F~~~v 208 (299)
.++..| ..+
T Consensus 151 ~l~~~F-~~v 159 (181)
T PF01728_consen 151 LLKRCF-SKV 159 (181)
T ss_dssp HHHHHH-HHE
T ss_pred HHHhCC-eEE
Confidence 777777 344
No 203
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.15 E-value=3.2e-05 Score=66.40 Aligned_cols=114 Identities=22% Similarity=0.218 Sum_probs=81.1
Q ss_pred eEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcC
Q 037807 71 KVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDA 150 (299)
Q Consensus 71 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~ 150 (299)
+++|||.|.|-=+.-++=..+..+++.||-.+.-+...+.-.... .-++++++.+.+.+ ... ..+||+|++-+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L----~L~nv~v~~~R~E~--~~~-~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL----GLSNVEVINGRAEE--PEY-RESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH----T-SSEEEEES-HHH--TTT-TT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh----CCCCEEEEEeeecc--ccc-CCCccEEEeeh
Confidence 899999999987776654334568999999999888777665554 23589999999888 222 68999999987
Q ss_pred CCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHh
Q 037807 151 FDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCH 201 (299)
Q Consensus 151 ~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~ 201 (299)
..+. ..+++.+...|++||.++..-|..+ .+.+....+.++
T Consensus 124 v~~l--------~~l~~~~~~~l~~~G~~l~~KG~~~--~~El~~~~~~~~ 164 (184)
T PF02527_consen 124 VAPL--------DKLLELARPLLKPGGRLLAYKGPDA--EEELEEAKKAWK 164 (184)
T ss_dssp SSSH--------HHHHHHHGGGEEEEEEEEEEESS----HHHHHTHHHHHH
T ss_pred hcCH--------HHHHHHHHHhcCCCCEEEEEcCCCh--HHHHHHHHhHHH
Confidence 7662 6788999999999999998655432 233444444443
No 204
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=7.7e-06 Score=66.70 Aligned_cols=97 Identities=20% Similarity=0.215 Sum_probs=70.0
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+.+++++||||.|.+..... .++.+.|.++||||+.++.++++..+. .-++++.+.|..+.... .+.||..+
T Consensus 48 Egkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEf-----EvqidlLqcdildle~~--~g~fDtav 119 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEF-----EVQIDLLQCDILDLELK--GGIFDTAV 119 (185)
T ss_pred cCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHh-----hhhhheeeeeccchhcc--CCeEeeEE
Confidence 57899999999999885544 456789999999999999999998765 23457777776654432 58899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcC
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALR 174 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~Lk 174 (299)
+|++-..... -...+|.+...+..+
T Consensus 120 iNppFGTk~~--~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 120 INPPFGTKKK--GADMEFVSAALKVAS 144 (185)
T ss_pred ecCCCCcccc--cccHHHHHHHHHHHH
Confidence 9976542211 134666666555544
No 205
>PRK10742 putative methyltransferase; Provisional
Probab=98.11 E-value=3.5e-05 Score=68.75 Aligned_cols=84 Identities=11% Similarity=0.109 Sum_probs=68.9
Q ss_pred CeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhc--CCCC---CCEEEEEccHHHHHHhcCCCCcc
Q 037807 70 KKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAI--GYED---SRVILHVCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~--~~~~---~rv~v~~~D~~~~l~~~~~~~fD 144 (299)
.+|||+-+|.|..+.+++... . +|++||-++.+..+.++.+..... .... .|++++.+|..+|++.. ...||
T Consensus 90 p~VLD~TAGlG~Da~~las~G-~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~-~~~fD 166 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVG-C-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-TPRPQ 166 (250)
T ss_pred CEEEECCCCccHHHHHHHHcC-C-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC-CCCCc
Confidence 389999999999999999874 3 499999999999999998876311 1111 57999999999999876 56899
Q ss_pred EEEEcCCCCCCC
Q 037807 145 AIIIDAFDPIRP 156 (299)
Q Consensus 145 vIi~D~~~~~~~ 156 (299)
+|++|+..|...
T Consensus 167 VVYlDPMfp~~~ 178 (250)
T PRK10742 167 VVYLDPMFPHKQ 178 (250)
T ss_pred EEEECCCCCCCc
Confidence 999999887543
No 206
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.10 E-value=1.1e-05 Score=74.63 Aligned_cols=105 Identities=12% Similarity=0.169 Sum_probs=72.4
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+.+.|||+|||+|.++...++.. ..+|.+||-+.-+ +.|++.+..++ + +..++++.+...+. ..|.++.|+||
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~--~-~~ii~vi~gkvEdi--~LP~eKVDiIv 132 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNG--L-EDVITVIKGKVEDI--ELPVEKVDIIV 132 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcC--c-cceEEEeecceEEE--ecCccceeEEe
Confidence 46899999999999999999885 7899999987644 88988776552 2 34789999887775 34458999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEE
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMC 180 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv 180 (299)
+..-.-...-+.+. ...+-.=-+.|+|||++.
T Consensus 133 SEWMGy~Ll~EsMl-dsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 133 SEWMGYFLLYESML-DSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ehhhhHHHHHhhhh-hhhhhhhhhccCCCceEc
Confidence 76432110000000 111111236799999886
No 207
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.09 E-value=4.6e-06 Score=77.17 Aligned_cols=115 Identities=24% Similarity=0.226 Sum_probs=72.8
Q ss_pred CCCCeEEEEeccccHHHHHHHhc-------CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcC
Q 037807 67 PNPKKVLLIGGGDGGILREISRH-------ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQ 139 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~-------~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~ 139 (299)
.+..+|||-+||+|+++.++.++ ....++.++|+|+.++.+|+-++...+ .+.....+..+|...--....
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~--~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG--IDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT--HHCBGCEEEES-TTTSHSCTS
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc--ccccccccccccccccccccc
Confidence 34568999999999999888763 235789999999999999998764321 123345688888754322111
Q ss_pred CCCccEEEEcCCCCCC--CC-----CCCC----------cHHHHHHHHHhcCCCcEEEEec
Q 037807 140 SGTFDAIIIDAFDPIR--PG-----HDLF----------EGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 140 ~~~fDvIi~D~~~~~~--~~-----~~l~----------t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
..+||+|++++|-... .. ..-| ...|+..+.+.|++||.+++-.
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 4689999998765432 00 0001 1358899999999999866543
No 208
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.09 E-value=2.2e-06 Score=66.48 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=46.6
Q ss_pred EEEeccccHHHHHHHhcC-Cc--cEEEEEECCHH---HHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 73 LLIGGGDGGILREISRHA-SV--EQIHICEIDTM---LINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 73 L~IG~G~G~~~~~l~~~~-~~--~~v~~VEid~~---vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
|+||+..|..+..+++.- .. .++++||..+. .-+..++ . . -..+++++.+|..+.+.+...+++|+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~----~--~-~~~~~~~~~g~s~~~l~~~~~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK----A--G-LSDRVEFIQGDSPDFLPSLPDGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS----------------G--G-G-BTEEEEES-THHHHHHHHH--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh----c--C-CCCeEEEEEcCcHHHHHHcCCCCEEEE
Confidence 689999999988887632 12 37999999995 3333333 1 1 135799999999998887634799999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
++|...... .....++.+.+.|+|||++++.
T Consensus 74 ~iDg~H~~~-----~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 74 FIDGDHSYE-----AVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp EEES---HH-----HHHHHHHHHGGGEEEEEEEEEE
T ss_pred EECCCCCHH-----HHHHHHHHHHHHcCCCeEEEEe
Confidence 999753210 1256688889999999999974
No 209
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=4.6e-05 Score=72.04 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=86.2
Q ss_pred CCCeEEEEeccccHHHHHHHhcCC--ccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCC-CCcc
Q 037807 68 NPKKVLLIGGGDGGILREISRHAS--VEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQS-GTFD 144 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~--~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~-~~fD 144 (299)
+..+|||+.++-|+=+.+++..-. ...|+++|+|+.-++..++++...+ -.++.++..|+..+...... ++||
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG----~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG----VRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC----CCceEEEecccccccccccccCcCc
Confidence 458999999999998888887432 2456999999999999999988762 34588999998876554322 3699
Q ss_pred EEEEcCCCCC-CC----CCCC-------------CcHHHHHHHHHhcCCCcEEEEecCCc
Q 037807 145 AIIIDAFDPI-RP----GHDL-------------FEGPFFELVAKALRPGGAMCIQAESL 186 (299)
Q Consensus 145 vIi~D~~~~~-~~----~~~l-------------~t~ef~~~~~~~LkpgGvlv~~~~s~ 186 (299)
.|++|++... |. +... +..+++....+.|||||+|+-.+.|.
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 9999987542 11 1111 13678888999999999999877554
No 210
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.07 E-value=4.1e-05 Score=69.55 Aligned_cols=109 Identities=17% Similarity=0.332 Sum_probs=64.9
Q ss_pred CCCeEEEEeccccHHHHH-HHh-cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 68 NPKKVLLIGGGDGGILRE-ISR-HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~-l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.|++|+-||+|.--++.- +++ +.....|+++|+|++.++.+++-.... .++ ..+++++.+|+.+.-.+ -..||+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-~~L-~~~m~f~~~d~~~~~~d--l~~~Dv 195 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-LGL-SKRMSFITADVLDVTYD--LKEYDV 195 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----HH--SSEEEEES-GGGG-GG------SE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-ccc-cCCeEEEecchhccccc--cccCCE
Confidence 467999999997665544 443 444567999999999999999876511 011 46899999998765433 368999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|++-+.-.....+ ..+++..+.+.++||.++++.+
T Consensus 196 V~lAalVg~~~e~---K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 196 VFLAALVGMDAEP---KEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EEE-TT-S----S---HHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEEhhhcccccch---HHHHHHHHHhhCCCCcEEEEec
Confidence 9986543211111 3789999999999999999864
No 211
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.06 E-value=2.4e-05 Score=80.37 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=77.6
Q ss_pred CCCeEEEEeccccHHHHHHHhc-----C-------------------------------------CccEEEEEECCHHHH
Q 037807 68 NPKKVLLIGGGDGGILREISRH-----A-------------------------------------SVEQIHICEIDTMLI 105 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~-----~-------------------------------------~~~~v~~VEid~~vi 105 (299)
....++|-+||+|+++.|.+.. | ...+++++|+|+.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 3578999999999999997642 1 012699999999999
Q ss_pred HHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcC---CCcEEEEe
Q 037807 106 NVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALR---PGGAMCIQ 182 (299)
Q Consensus 106 ~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~Lk---pgGvlv~~ 182 (299)
+.|++++...+ + ..++++..+|+.++......++||+|++|++........--..++|+.+-+.|+ +|+.+++-
T Consensus 270 ~~A~~N~~~~g--~-~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ll 346 (702)
T PRK11783 270 QAARKNARRAG--V-AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALF 346 (702)
T ss_pred HHHHHHHHHcC--C-CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999987652 2 347999999998764322135799999998764322211112456666555544 77776653
Q ss_pred c
Q 037807 183 A 183 (299)
Q Consensus 183 ~ 183 (299)
+
T Consensus 347 t 347 (702)
T PRK11783 347 S 347 (702)
T ss_pred e
Confidence 3
No 212
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.03 E-value=8.1e-06 Score=71.90 Aligned_cols=108 Identities=19% Similarity=0.318 Sum_probs=74.8
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCc--cEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHH--HHHhcCCCCc
Q 037807 68 NPKKVLLIGGGDGGILREISRHASV--EQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSE--YLKTVQSGTF 143 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~--~l~~~~~~~f 143 (299)
.+.+||+||||.|.+..-+++..+. -.|.++|.+|..+++.+++-.. +..++...+.|... .......+.+
T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~-----~e~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY-----DESRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc-----chhhhcccceeccchhccCCCCcCcc
Confidence 3458999999999999999985444 6899999999999999987543 23455555555422 1121235789
Q ss_pred cEEEEcCCC-CCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 144 DAIIIDAFD-PIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 144 DvIi~D~~~-~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|.|++-..- ...|.. -...++.+++.|||||.+++.-
T Consensus 146 D~it~IFvLSAi~pek---~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEK---MQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred ceEEEEEEEeccChHH---HHHHHHHHHHHhCCCcEEEEee
Confidence 998763211 112211 1567899999999999999853
No 213
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.97 E-value=2.7e-05 Score=69.77 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=63.3
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.++.-||+||.|+|.++..++... ++|+++|+||.|+....+.+... -...+++++.+|..+. ....||++
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gt---p~~~kLqV~~gD~lK~----d~P~fd~c 127 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGT---PKSGKLQVLHGDFLKT----DLPRFDGC 127 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCC---CccceeeEEecccccC----CCccccee
Confidence 467889999999999999999874 78999999999999888876533 1247899999996542 23689999
Q ss_pred EEcCCCCC
Q 037807 147 IIDAFDPI 154 (299)
Q Consensus 147 i~D~~~~~ 154 (299)
|.+.+...
T Consensus 128 VsNlPyqI 135 (315)
T KOG0820|consen 128 VSNLPYQI 135 (315)
T ss_pred eccCCccc
Confidence 99876543
No 214
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.92 E-value=2e-05 Score=73.07 Aligned_cols=91 Identities=22% Similarity=0.236 Sum_probs=70.9
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEE
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIII 148 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~ 148 (299)
-...+|+|+|.|.+++.++.+.+ .|.+++.|...+..++.++. +.|+-+.+|+++-+ .+-|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~--------~gV~~v~gdmfq~~-----P~~daI~m 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA--------PGVEHVAGDMFQDT-----PKGDAIWM 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc--------CCcceecccccccC-----CCcCeEEE
Confidence 46789999999999999988653 58999999887777776652 34888889986653 23469887
Q ss_pred -----cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 149 -----DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 149 -----D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
|.+|... ..|+++|++.|+|||.+++
T Consensus 243 kWiLhdwtDedc-------vkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 243 KWILHDWTDEDC-------VKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred EeecccCChHHH-------HHHHHHHHHhCCCCCEEEE
Confidence 5555432 7899999999999998876
No 215
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.88 E-value=4e-05 Score=70.53 Aligned_cols=106 Identities=15% Similarity=0.163 Sum_probs=75.4
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
..+-|||+|||+|.+....+.. +.++|.+||.++ |.+.|++....+. -..|+.++.|-..+.- . +++.|+||
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~-MAqyA~~Lv~~N~---~~~rItVI~GKiEdie--L-PEk~DviI 248 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASE-MAQYARKLVASNN---LADRITVIPGKIEDIE--L-PEKVDVII 248 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehhH-HHHHHHHHHhcCC---ccceEEEccCcccccc--C-chhccEEE
Confidence 3577999999999888776655 578999999865 8889998765441 2468999988866542 3 68999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+.+-.---..+++ .|-|-..++.|+|+|.+.-..
T Consensus 249 SEPMG~mL~NERM--LEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 249 SEPMGYMLVNERM--LESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred eccchhhhhhHHH--HHHHHHHHhhcCCCCcccCcc
Confidence 7643221111111 456777789999999887443
No 216
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.86 E-value=7.5e-05 Score=71.07 Aligned_cols=104 Identities=24% Similarity=0.401 Sum_probs=80.2
Q ss_pred CCeEEEEeccccHHHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 69 PKKVLLIGGGDGGILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+.+|||.=+|+|.=+...++. +++.+|++-|+|++.++..++++..++. ++.++++...|+...+... .+.||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~--~~~~~~v~~~DAn~ll~~~-~~~fD~ID 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL--EDERIEVSNMDANVLLYSR-QERFDVID 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHS-TT-EEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc--cCceEEEehhhHHHHhhhc-cccCCEEE
Confidence 458999889999987777765 7789999999999999999999876632 2348999999999988533 68999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+|++... ..|+..+.+.++.||+|.+.+
T Consensus 127 lDPfGSp--------~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 127 LDPFGSP--------APFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp E--SS----------HHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCCc--------cHhHHHHHHHhhcCCEEEEec
Confidence 9977531 679999999999999998865
No 217
>PRK04148 hypothetical protein; Provisional
Probab=97.85 E-value=4.8e-05 Score=61.74 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=49.9
Q ss_pred CCCeEEEEeccccH-HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGDGG-ILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+..+||+||+|.|. ++..+.+.. .+|+++|+|+..++.+++. .++++.+|.++--.+. -+.+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~-----------~~~~v~dDlf~p~~~~-y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKL-----------GLNAFVDDLFNPNLEI-YKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHh-----------CCeEEECcCCCCCHHH-HhcCCEE
Confidence 45789999999996 777777653 5899999999999988764 3567777765432222 2568888
Q ss_pred EEc
Q 037807 147 IID 149 (299)
Q Consensus 147 i~D 149 (299)
..-
T Consensus 82 ysi 84 (134)
T PRK04148 82 YSI 84 (134)
T ss_pred EEe
Confidence 853
No 218
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.84 E-value=0.00016 Score=64.02 Aligned_cols=99 Identities=20% Similarity=0.200 Sum_probs=60.3
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
..++||.||-.+.......+... .++|+++|||+.+++..++..... .-+++.+..|.++-+.+.-.++||+++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~-----gl~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGL-PKRITVVDIDERLLDFINRVAEEE-----GLPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHH-----T--EEEE---TTS---TTTSS-BSEEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHc-----CCceEEEEecccccCCHHHhcCCCEEE
Confidence 47899999988876655545443 378999999999999998877665 234999999999887653368999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCc
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGG 177 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgG 177 (299)
.|++... +. -.-|+....+.||..|
T Consensus 118 TDPPyT~---~G--~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 118 TDPPYTP---EG--LKLFLSRGIEALKGEG 142 (243)
T ss_dssp E---SSH---HH--HHHHHHHHHHTB-STT
T ss_pred eCCCCCH---HH--HHHHHHHHHHHhCCCC
Confidence 9976531 00 1458888889999887
No 219
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.00017 Score=64.72 Aligned_cols=119 Identities=23% Similarity=0.183 Sum_probs=87.5
Q ss_pred CCCCeEEEEeccccHHHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHH--HHHhcCCCCc
Q 037807 67 PNPKKVLLIGGGDGGILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSE--YLKTVQSGTF 143 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~--~l~~~~~~~f 143 (299)
.+..+||+-|.|+|++...+++. .+..++...|..+.-.+.|++.|.... + ..++++++-|... |..+ ..++
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg--i-~~~vt~~hrDVc~~GF~~k--s~~a 178 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG--I-GDNVTVTHRDVCGSGFLIK--SLKA 178 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC--C-CcceEEEEeecccCCcccc--cccc
Confidence 45678999999999999999883 346789999999999999999988653 2 4588998888754 3332 5789
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhh
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHR 202 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~ 202 (299)
|.|++|.+.|+. ..-.+..+||.+|.-+++. ||. .+..++..+.|++
T Consensus 179 DaVFLDlPaPw~---------AiPha~~~lk~~g~r~csF-SPC--IEQvqrtce~l~~ 225 (314)
T KOG2915|consen 179 DAVFLDLPAPWE---------AIPHAAKILKDEGGRLCSF-SPC--IEQVQRTCEALRS 225 (314)
T ss_pred ceEEEcCCChhh---------hhhhhHHHhhhcCceEEec-cHH--HHHHHHHHHHHHh
Confidence 999999999953 3444556899888544432 232 3445666666665
No 220
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.0003 Score=61.03 Aligned_cols=122 Identities=19% Similarity=0.237 Sum_probs=82.7
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCC-ccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHH------HHHhcC
Q 037807 67 PNPKKVLLIGGGDGGILREISRHAS-VEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSE------YLKTVQ 139 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~------~l~~~~ 139 (299)
.+..+|+|||+-.|+-+..+++.-+ ...|++||++|-- ..++|.++.+|... ......
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 4578999999999999999887532 2459999998742 13568888888743 222233
Q ss_pred CCCccEEEEcCCCCCCCC---CCCC----cHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCCce
Q 037807 140 SGTFDAIIIDAFDPIRPG---HDLF----EGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKGSA 208 (299)
Q Consensus 140 ~~~fDvIi~D~~~~~~~~---~~l~----t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~~v 208 (299)
....|+|++|......-. .+.. ....++.+...|++||.+++ ..+..+....+++.+++.| ..+
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~----K~fqg~~~~~~l~~~~~~F-~~v 179 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA----KVFQGEDFEDLLKALRRLF-RKV 179 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE----EEEeCCCHHHHHHHHHHhh-cee
Confidence 455799999986533211 1111 12335556789999999998 3344455778889999999 444
No 221
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.00014 Score=70.61 Aligned_cols=111 Identities=14% Similarity=0.220 Sum_probs=82.2
Q ss_pred CCeEEEEeccccHHHHHHHhc----CCccEEEEEECCHHHHHHHHh-hchhhhcCCCCCCEEEEEccHHHHHHhcCCCCc
Q 037807 69 PKKVLLIGGGDGGILREISRH----ASVEQIHICEIDTMLINVYKE-YFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTF 143 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~-~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~f 143 (299)
...|+++|+|-|-+++..++. ...-++.+||-+|..+-..+. ++..+ +.+|+++..|.++|-. +.++.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-----~~~Vtii~~DMR~w~a--p~eq~ 440 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-----DNRVTIISSDMRKWNA--PREQA 440 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-----cCeeEEEeccccccCC--chhhc
Confidence 456888999999998877652 223578999999998776654 34444 6799999999999963 24789
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCccc
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWF 188 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~ 188 (299)
|+|++.+-...|.. -.++|-+..+.+.|||+|+.+=+....+.
T Consensus 441 DI~VSELLGSFGDN--ELSPECLDG~q~fLkpdgIsIP~sYtSyi 483 (649)
T KOG0822|consen 441 DIIVSELLGSFGDN--ELSPECLDGAQKFLKPDGISIPSSYTSYI 483 (649)
T ss_pred cchHHHhhccccCc--cCCHHHHHHHHhhcCCCceEccchhhhhh
Confidence 99998654433322 24689999999999999999866543333
No 222
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.82 E-value=3.4e-05 Score=69.89 Aligned_cols=100 Identities=21% Similarity=0.214 Sum_probs=72.3
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCccEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~fDvI 146 (299)
+...||+||.|.|.++++++++. .++++||+|+...+..++.+. .+++++++.+|+.++-... -......|
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~D~l~~~~~~~~~~~~~~v 101 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA------SNPNVEVINGDFLKWDLYDLLKNQPLLV 101 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT------TCSSEEEEES-TTTSCGGGHCSSSEEEE
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh------hcccceeeecchhccccHHhhcCCceEE
Confidence 57889999999999999999985 799999999999999998776 3689999999998753211 01355678
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcC---CCcEEEEe
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALR---PGGAMCIQ 182 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~Lk---pgGvlv~~ 182 (299)
+.+.+... +..++..+...-+ ...++++|
T Consensus 102 v~NlPy~i-------s~~il~~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 102 VGNLPYNI-------SSPILRKLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp EEEETGTG-------HHHHHHHHHHHGGGCEEEEEEEEE
T ss_pred EEEecccc-------hHHHHHHHhhcccccccceEEEEe
Confidence 87765421 3455555555222 33556665
No 223
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.79 E-value=4.9e-05 Score=65.93 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=63.0
Q ss_pred CCCeEEEEeccccHHHHHH----Hh---c-CC-ccEEEEEECCHHHHHHHHhh------------------c-hhhhcCC
Q 037807 68 NPKKVLLIGGGDGGILREI----SR---H-AS-VEQIHICEIDTMLINVYKEY------------------F-PEIAIGY 119 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l----~~---~-~~-~~~v~~VEid~~vi~~a~~~------------------~-~~~~~~~ 119 (299)
.+-+|+-.||++|.=+..+ .. . .+ .-+|.+.|||+.+++.|++- | ...++.+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5789999999999844332 22 1 11 35899999999999999952 1 0000111
Q ss_pred C-----CCCEEEEEccHHHHHHhcCCCCccEEEEc-CCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 120 E-----DSRVILHVCDGSEYLKTVQSGTFDAIIID-AFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 120 ~-----~~rv~v~~~D~~~~l~~~~~~~fDvIi~D-~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
. ..+|++...|..+ . ....+.||+|+|- ..--..+. .....++.+.+.|+|||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-~-~~~~~~fD~I~CRNVlIYF~~~---~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-P-DPPFGRFDLIFCRNVLIYFDPE---TQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT--S-------EEEEEE-SSGGGS-HH---HHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCC-C-CcccCCccEEEecCEEEEeCHH---HHHHHHHHHHHHcCCCCEEEEe
Confidence 1 2478888888877 1 1126789999983 21100000 1267899999999999999984
No 224
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.79 E-value=0.00031 Score=63.83 Aligned_cols=117 Identities=19% Similarity=0.313 Sum_probs=83.1
Q ss_pred CCCCeEEEEeccccHHHHHHHh-cCC-ccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHH--HHhcCCCC
Q 037807 67 PNPKKVLLIGGGDGGILREISR-HAS-VEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEY--LKTVQSGT 142 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~-~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~--l~~~~~~~ 142 (299)
..|-+||+|.||.|.-...++. ++. ..+|...|.++.-++..++..... ++ ..-+++..+|+++. +... ..+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~--gL-~~i~~f~~~dAfd~~~l~~l-~p~ 209 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER--GL-EDIARFEQGDAFDRDSLAAL-DPA 209 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc--CC-ccceEEEecCCCCHhHhhcc-CCC
Confidence 4688999999999999888775 443 479999999999999999987654 22 23459999999875 3333 456
Q ss_pred ccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccc
Q 037807 143 FDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQ 189 (299)
Q Consensus 143 fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~ 189 (299)
.+++|+..-...-+...+ -..-++.+.++|.|||.++.. +.||..
T Consensus 210 P~l~iVsGL~ElF~Dn~l-v~~sl~gl~~al~pgG~lIyT-gQPwHP 254 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDL-VRRSLAGLARALEPGGYLIYT-GQPWHP 254 (311)
T ss_pred CCEEEEecchhhCCcHHH-HHHHHHHHHHHhCCCcEEEEc-CCCCCc
Confidence 799887432111111111 144578899999999999863 456654
No 225
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.72 E-value=0.00062 Score=59.71 Aligned_cols=98 Identities=20% Similarity=0.231 Sum_probs=73.8
Q ss_pred CCeEEEEeccccHHHHHHH-hcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 69 PKKVLLIGGGDGGILREIS-RHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+++++|||.|.|-=+.-++ -.|. .+||.+|-...-+...++-.... +-++++++++.+.++-.+. .. ||+|+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~-~~vtLles~~Kk~~FL~~~~~eL----~L~nv~i~~~RaE~~~~~~-~~-~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPD-LKVTLLESLGKKIAFLREVKKEL----GLENVEIVHGRAEEFGQEK-KQ-YDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccC-CcEEEEccCchHHHHHHHHHHHh----CCCCeEEehhhHhhccccc-cc-CcEEE
Confidence 6899999999998777665 3444 45999999998777666554433 4578999999998886432 12 99999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
+-+..+- ..+...+...|++||.++.
T Consensus 141 sRAva~L--------~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 141 SRAVASL--------NVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred eehccch--------HHHHHHHHHhcccCCcchh
Confidence 8766542 5577788889999998875
No 226
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.69 E-value=0.00041 Score=63.61 Aligned_cols=115 Identities=20% Similarity=0.237 Sum_probs=87.2
Q ss_pred CCCeEEEEeccccHHHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGDGGILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
...+|||+++|.|+=+..++.. .+...|+++|+++.-+...++++... ...++.+...|+..+........||.|
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~----g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL----GVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT----T-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc----CCceEEEEeeccccccccccccccchh
Confidence 4578999999999988888763 33578999999999999999988765 345788888999988654434569999
Q ss_pred EEcCCCCCC-----CCCCC-------------CcHHHHHHHHHhc----CCCcEEEEecCCc
Q 037807 147 IIDAFDPIR-----PGHDL-------------FEGPFFELVAKAL----RPGGAMCIQAESL 186 (299)
Q Consensus 147 i~D~~~~~~-----~~~~l-------------~t~ef~~~~~~~L----kpgGvlv~~~~s~ 186 (299)
++|.+-... .+... ...+.++.+.+.+ +|||+++-.+.|.
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 999875421 01100 1256788899999 9999999866443
No 227
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00037 Score=65.16 Aligned_cols=102 Identities=24% Similarity=0.355 Sum_probs=84.4
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEE
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIII 148 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~ 148 (299)
+.+|||-=+|+|.=+...+.--+..+|++=|++|+.+++.+++...+ ......++..|+..++.+. ...||+|=+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N----~~~~~~v~n~DAN~lm~~~-~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN----SGEDAEVINKDANALLHEL-HRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc----CcccceeecchHHHHHHhc-CCCccEEec
Confidence 78999999999998877776444458999999999999999998765 2345667779999999875 589999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 149 DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 149 D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|++..- ..|++...+.++.||++.+.+
T Consensus 128 DPFGSP--------aPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 DPFGSP--------APFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCCCC--------chHHHHHHHHhhcCCEEEEEe
Confidence 976531 569999999999999998865
No 228
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.67 E-value=0.00045 Score=60.57 Aligned_cols=122 Identities=20% Similarity=0.169 Sum_probs=83.5
Q ss_pred CCCCeEEEEeccccHHHHHHHhcC-CccEEEEEECCHHH----HHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CC
Q 037807 67 PNPKKVLLIGGGDGGILREISRHA-SVEQIHICEIDTML----INVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QS 140 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~v----i~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~ 140 (299)
.+..+||-||..+|.+..+++..- +...|.+||.++.. +++|++ .+|+--+.+|++.--+-. --
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~----------R~NIiPIl~DAr~P~~Y~~lv 141 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK----------RPNIIPILEDARHPEKYRMLV 141 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----------STTEEEEES-TTSGGGGTTTS
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----------CCceeeeeccCCChHHhhccc
Confidence 356799999999999999998743 25689999999954 445554 468888999997533211 13
Q ss_pred CCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe--cC---CcccchHHHHHHHHHHhh-hc
Q 037807 141 GTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ--AE---SLWFQQFSVQHLIDDCHR-IF 204 (299)
Q Consensus 141 ~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~--~~---s~~~~~~~~~~~~~~l~~-~F 204 (299)
+..|+|+.|...|.. ..-+..++..-||+||.+++. +. +.-.....|.+..+.|++ .|
T Consensus 142 ~~VDvI~~DVaQp~Q------a~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~ 205 (229)
T PF01269_consen 142 EMVDVIFQDVAQPDQ------ARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGF 205 (229)
T ss_dssp --EEEEEEE-SSTTH------HHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTC
T ss_pred ccccEEEecCCChHH------HHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCC
Confidence 589999999887742 245667777899999977753 22 222234678888899987 36
No 229
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.62 E-value=0.00034 Score=61.06 Aligned_cols=106 Identities=17% Similarity=0.246 Sum_probs=61.9
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhh-----cCCCCCCEEEEEccHHH--HHHhcC
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIA-----IGYEDSRVILHVCDGSE--YLKTVQ 139 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-----~~~~~~rv~v~~~D~~~--~l~~~~ 139 (299)
.+....+|||+|.|.....++-..+..+..+||+.+...+.|++...... -+....++++..+|..+ +....
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~- 119 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI- 119 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH-
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh-
Confidence 34567899999999998887765567889999999999998886543321 12345688999999754 23221
Q ss_pred CCCccEEEEcCCCCCCCCCCCCcHHH---HHHHHHhcCCCcEEEE
Q 037807 140 SGTFDAIIIDAFDPIRPGHDLFEGPF---FELVAKALRPGGAMCI 181 (299)
Q Consensus 140 ~~~fDvIi~D~~~~~~~~~~l~t~ef---~~~~~~~LkpgGvlv~ 181 (299)
-..-|+|+++... |..+. +......||+|-.++.
T Consensus 120 ~s~AdvVf~Nn~~--------F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 120 WSDADVVFVNNTC--------FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp GHC-SEEEE--TT--------T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred hcCCCEEEEeccc--------cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 1357999997542 22333 3445567888777665
No 230
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.0003 Score=66.38 Aligned_cols=108 Identities=18% Similarity=0.164 Sum_probs=78.6
Q ss_pred CeEEEEeccccHHHHHHHhcCC-----cc----------------------------------EEEEEECCHHHHHHHHh
Q 037807 70 KKVLLIGGGDGGILREISRHAS-----VE----------------------------------QIHICEIDTMLINVYKE 110 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~~~~-----~~----------------------------------~v~~VEid~~vi~~a~~ 110 (299)
...+|-=||+|+++.|.+-... .. .+.++|+|+.+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 5799999999999999775321 11 37799999999999999
Q ss_pred hchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCC-----CCcHHHHHHHHHhcCCCcEEEEec
Q 037807 111 YFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHD-----LFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 111 ~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~-----l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|....+. ...+++..+|+..+-.. .+.+|+||++++...-.... || .+|-+.+++.++.-+.+++.+
T Consensus 273 NA~~AGv---~d~I~f~~~d~~~l~~~--~~~~gvvI~NPPYGeRlg~~~~v~~LY-~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 273 NARAAGV---GDLIEFKQADATDLKEP--LEEYGVVISNPPYGERLGSEALVAKLY-REFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHhcCC---CceEEEEEcchhhCCCC--CCcCCEEEeCCCcchhcCChhhHHHHH-HHHHHHHHHHhcCCceEEEEc
Confidence 9765432 45799999998876432 26899999998875432211 33 456666777788777777643
No 231
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.58 E-value=0.00018 Score=62.37 Aligned_cols=110 Identities=20% Similarity=0.244 Sum_probs=71.2
Q ss_pred eEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhc-CCCCCCEEEEEccH-HHHHHh--cCCCCccEE
Q 037807 71 KVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAI-GYEDSRVILHVCDG-SEYLKT--VQSGTFDAI 146 (299)
Q Consensus 71 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~-~~~~~rv~v~~~D~-~~~l~~--~~~~~fDvI 146 (299)
+||+||+|+|.-+..++++.+...-.--|+|+......+.+....+. .. .+.+.+-..+. ..+... ...+.||.|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv-~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNV-RPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCccc-CCCeEeecCCCCCccccccccCCCCccee
Confidence 59999999999999999876666677789999887666665543311 01 12233322221 222100 014689999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
++--.-+..+-. .+..+|+.+.+.|++||+|++..
T Consensus 107 ~~~N~lHI~p~~--~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 107 FCINMLHISPWS--AVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred eehhHHHhcCHH--HHHHHHHHHHHhCCCCCEEEEeC
Confidence 984333332211 13778999999999999999865
No 232
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.51 E-value=0.00021 Score=65.55 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=68.6
Q ss_pred CCCeEEEEeccccHHHHHH----Hhc----CCccEEEEEECCHHHHHHHHhhc-hhhh----------cCCC--------
Q 037807 68 NPKKVLLIGGGDGGILREI----SRH----ASVEQIHICEIDTMLINVYKEYF-PEIA----------IGYE-------- 120 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l----~~~----~~~~~v~~VEid~~vi~~a~~~~-~~~~----------~~~~-------- 120 (299)
.+-||+..||++|.-+..+ .+. ...-+|++.|||+.+++.|++-. +... .-|.
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 3579999999999854332 232 11347999999999999999741 1000 0000
Q ss_pred --------CCCEEEEEccHHHHHHhcCCCCccEEEE-cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 121 --------DSRVILHVCDGSEYLKTVQSGTFDAIII-DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 121 --------~~rv~v~~~D~~~~l~~~~~~~fDvIi~-D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
..+|++...|..+.-.. ..+.||+|++ +..-...+. .....++.+.+.|+|||.|++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~-~~~~fD~I~cRNvliyF~~~---~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWA-VPGPFDAIFCRNVMIYFDKT---TQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCc-cCCCcceeeHhhHHhcCCHH---HHHHHHHHHHHHhCCCcEEEEe
Confidence 13456666665441100 1468999998 221111110 1267899999999999999873
No 233
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.45 E-value=0.00055 Score=59.72 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=57.5
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc--CCCCccE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV--QSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~~fDv 145 (299)
++..|+|.-||.|+.+...+... ..|.+|||||.-+..||.++.-.+. .+ |+++++||..+..... .+..+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYGI--~~-rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYGV--PD-RITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeecC--Cc-eeEEEechHHHHHHHHhhhhheeee
Confidence 56788888888777777776653 3689999999999999999876532 34 9999999998876543 1344666
Q ss_pred EEEc
Q 037807 146 IIID 149 (299)
Q Consensus 146 Ii~D 149 (299)
+...
T Consensus 169 vf~s 172 (263)
T KOG2730|consen 169 VFLS 172 (263)
T ss_pred eecC
Confidence 6643
No 234
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.41 E-value=0.0005 Score=62.37 Aligned_cols=107 Identities=19% Similarity=0.268 Sum_probs=67.5
Q ss_pred CCCeEEEEeccccHH----HHHHHhcCC-----ccEEEEEECCHHHHHHHHhh-ch-hhh-cC---------C---CC--
Q 037807 68 NPKKVLLIGGGDGGI----LREISRHAS-----VEQIHICEIDTMLINVYKEY-FP-EIA-IG---------Y---ED-- 121 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~----~~~l~~~~~-----~~~v~~VEid~~vi~~a~~~-~~-~~~-~~---------~---~~-- 121 (299)
++-+|.-.||++|.- +..+.+..+ .-+|++.|||..+++.|+.- .+ ... .+ | .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 478999999999973 344444332 46899999999999999862 11 100 00 0 01
Q ss_pred --------CCEEEEEccHHHHHHhcCCCCccEEEE-cC---CCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 122 --------SRVILHVCDGSEYLKTVQSGTFDAIII-DA---FDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 122 --------~rv~v~~~D~~~~l~~~~~~~fDvIi~-D~---~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
..|.+...|...--. ..+.||+|+| |. ++.. ...+.+...+..|+|||+|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRNVLIYFd~~------~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRNVLIYFDEE------TQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcceEEeeCHH------HHHHHHHHHHHHhCCCCEEEEc
Confidence 134444444322110 2467999998 22 2211 1377899999999999999983
No 235
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.39 E-value=0.00012 Score=63.66 Aligned_cols=105 Identities=15% Similarity=0.263 Sum_probs=57.8
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
++...|-|+|||++.++..+... .+|...|+-. .+++ |+..|.....- +++..|++
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~~---~~V~SfDLva-----------------~n~~--Vtacdia~vPL--~~~svDv~ 126 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPNK---HKVHSFDLVA-----------------PNPR--VTACDIANVPL--EDESVDVA 126 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S------EEEEESS------------------SSTT--EEES-TTS-S----TT-EEEE
T ss_pred CCCEEEEECCCchHHHHHhcccC---ceEEEeeccC-----------------CCCC--EEEecCccCcC--CCCceeEE
Confidence 44568999999999999776422 3466666522 1233 55677644332 36889999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe-cCCcccchHHHHHHHHHH
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ-AESLWFQQFSVQHLIDDC 200 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~-~~s~~~~~~~~~~~~~~l 200 (299)
|+.+.-- |.. -.+|++++.|+||+||.|.+- ..|.+...+.|.+.++.+
T Consensus 127 VfcLSLM-GTn----~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~ 176 (219)
T PF05148_consen 127 VFCLSLM-GTN----WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKL 176 (219)
T ss_dssp EEES----SS-----HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCT
T ss_pred EEEhhhh-CCC----cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHC
Confidence 9876532 111 178999999999999988764 356555555444444433
No 236
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.39 E-value=0.00086 Score=58.56 Aligned_cols=101 Identities=19% Similarity=0.253 Sum_probs=71.8
Q ss_pred EEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCC
Q 037807 72 VLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAF 151 (299)
Q Consensus 72 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~ 151 (299)
|.||||-=|.++..|++...+.+++++|+++.-++.|++++...+ + ..+++++.+||.+-+.. .+..|+|++-.-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~--l-~~~i~~rlgdGL~~l~~--~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG--L-EDRIEVRLGDGLEVLKP--GEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT----TTTEEEEE-SGGGG--G--GG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--C-cccEEEEECCcccccCC--CCCCCEEEEecC
Confidence 689999999999999998778899999999999999999987653 2 46899999999988763 344788887432
Q ss_pred CCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 152 DPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 152 ~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
.. . ...++++.....++....|++|.
T Consensus 76 GG-----~-lI~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 76 GG-----E-LIIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp -H-----H-HHHHHHHHTGGGGTT--EEEEEE
T ss_pred CH-----H-HHHHHHHhhHHHhccCCeEEEeC
Confidence 21 1 12567777777777777899873
No 237
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.33 E-value=0.0021 Score=59.37 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=63.2
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc---CCCCcc
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV---QSGTFD 144 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~---~~~~fD 144 (299)
+...++|.=+|.|+-+..+++..+..+|+++|.|+.+++.+++.+... ..|+++++++..++.+.. ...++|
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-----~~R~~~i~~nF~~l~~~l~~~~~~~vD 94 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-----EGRVVLIHDNFANFFEHLDELLVTKID 94 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-----CCcEEEEeCCHHHHHHHHHhcCCCccc
Confidence 456899999999999999998533378999999999999999987543 368999999988765432 235799
Q ss_pred EEEEcC
Q 037807 145 AIIIDA 150 (299)
Q Consensus 145 vIi~D~ 150 (299)
.|+.|+
T Consensus 95 gIl~DL 100 (305)
T TIGR00006 95 GILVDL 100 (305)
T ss_pred EEEEec
Confidence 999876
No 238
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.32 E-value=0.00099 Score=64.66 Aligned_cols=129 Identities=19% Similarity=0.280 Sum_probs=71.1
Q ss_pred cCeeeccCcchhhHHHHHHh-hccc-CCCCCCeEEEEeccccHHHHHHHhcCCccEEE--EEECCHHHHHHHHhh-chhh
Q 037807 41 DGALQLTEKDECAYQEMITH-LPLC-SIPNPKKVLLIGGGDGGILREISRHASVEQIH--ICEIDTMLINVYKEY-FPEI 115 (299)
Q Consensus 41 dg~~q~~~~de~~Y~e~l~~-~~l~-~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~--~VEid~~vi~~a~~~-~~~~ 115 (299)
.|..|+...- ..|.+.+.. +++. ....-+.+||+|||.|.++..++.+. +..+. .-|..+..++.|-+. ++..
T Consensus 89 gggt~F~~Ga-~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~-V~t~s~a~~d~~~~qvqfaleRGvpa~ 166 (506)
T PF03141_consen 89 GGGTMFPHGA-DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN-VTTMSFAPNDEHEAQVQFALERGVPAM 166 (506)
T ss_pred CCCccccCCH-HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC-ceEEEcccccCCchhhhhhhhcCcchh
Confidence 3445554322 346554443 3331 22345778999999999999999874 33222 124444555555432 3322
Q ss_pred hcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEc-CCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcc
Q 037807 116 AIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIID-AFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLW 187 (299)
Q Consensus 116 ~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D-~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~ 187 (299)
-..+...| |. .+.+.||+|=+. .-.++.+...+ ++-++-|+|+|||.++..+....
T Consensus 167 ~~~~~s~r-----------LP-fp~~~fDmvHcsrc~i~W~~~~g~----~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 167 IGVLGSQR-----------LP-FPSNAFDMVHCSRCLIPWHPNDGF----LLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hhhhcccc-----------cc-CCccchhhhhcccccccchhcccc----eeehhhhhhccCceEEecCCccc
Confidence 11110111 11 146889999773 23344433322 45678899999999998764433
No 239
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.28 E-value=0.00097 Score=62.21 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=77.8
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.+..++||||+++|+.+..++++. .+|++||..+-. .+ + .++++|+.+.+|++.+... .+.+|+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~----~~-L------~~~~~V~h~~~d~fr~~p~--~~~vDwv 274 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMA----QS-L------MDTGQVEHLRADGFKFRPP--RKNVDWL 274 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcC----Hh-h------hCCCCEEEEeccCcccCCC--CCCCCEE
Confidence 356799999999999999999984 389999965421 11 1 1578999999999998653 5689999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCC--cEEEEecCCcc-cchHHHHHHHHHHhhhc
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPG--GAMCIQAESLW-FQQFSVQHLIDDCHRIF 204 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~Lkpg--Gvlv~~~~s~~-~~~~~~~~~~~~l~~~F 204 (299)
++|....- ....+.+.+.|..| .-++++.-=+. .+.+..+..++.+.+.+
T Consensus 275 VcDmve~P--------~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l 327 (357)
T PRK11760 275 VCDMVEKP--------ARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQL 327 (357)
T ss_pred EEecccCH--------HHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 99987531 55677788888665 23444431111 12334444444455444
No 240
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.0066 Score=52.46 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=86.2
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCccE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~fDv 145 (299)
....+||-||..+|.+..+++..-+...|.+||.++.+..-.-.-.. +.+|+--+.+|++.--+-. --+..|+
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~------~R~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE------KRPNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH------hCCCceeeecccCCcHHhhhhcccccE
Confidence 35789999999999999999986556779999999987553322211 2567778888986421100 0356999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCc--EEEEecCCcc--c-chHHHHHHHHHHhhh
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGG--AMCIQAESLW--F-QQFSVQHLIDDCHRI 203 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgG--vlv~~~~s~~--~-~~~~~~~~~~~l~~~ 203 (299)
|+.|...|.. +.-+..++..-|++|| ++++.+-|.- . ..+.|++..+.|++.
T Consensus 149 iy~DVAQp~Q------a~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~ 205 (231)
T COG1889 149 IYQDVAQPNQ------AEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEG 205 (231)
T ss_pred EEEecCCchH------HHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhc
Confidence 9999988743 2456677888999999 5555543322 2 235777777777654
No 241
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.28 E-value=0.00025 Score=64.36 Aligned_cols=160 Identities=17% Similarity=0.145 Sum_probs=106.7
Q ss_pred EeeeeceEEEEeeCCcccEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHH
Q 037807 8 HFLEVEKIIFQGKSEYQNMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREIS 87 (299)
Q Consensus 8 ~~~~~~~~l~~~~s~~q~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~ 87 (299)
-.++...+|+.+.+++|++.|-. +..+.++.+++..+..+.+ ..|...|+- .=..++|.++|| +|....+.+
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~s-k~y~p~la~-----gy~~~~v~l~iG-DG~~fl~~~ 191 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESS-KQYLPTLAC-----GYEGKKVKLLIG-DGFLFLEDL 191 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHH-HHHhHHHhc-----ccCCCceEEEec-cHHHHHHHh
Confidence 34677889999999999997666 7788888888776665544 345444331 124678888887 999988888
Q ss_pred hcCCccEEEEEECCHHHHHHHHhhch----hhhcCCCCCCEEEEEccHHH----HHHhcCCCCccEEEEcCCC------C
Q 037807 88 RHASVEQIHICEIDTMLINVYKEYFP----EIAIGYEDSRVILHVCDGSE----YLKTVQSGTFDAIIIDAFD------P 153 (299)
Q Consensus 88 ~~~~~~~v~~VEid~~vi~~a~~~~~----~~~~~~~~~rv~v~~~D~~~----~l~~~~~~~fDvIi~D~~~------~ 153 (299)
+.. ...|+++|+|.-+...+..+.. ....++....+.+.++|..- ++++ ..+||-++.+..+ |
T Consensus 192 ~~~-~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e--~r~~~~~~f~~t~ya~ttvP 268 (337)
T KOG1562|consen 192 KEN-PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKE--GRSFCYVIFDLTAYAITTVP 268 (337)
T ss_pred ccC-CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHH--HHHhHHHhcCccceeeecCC
Confidence 764 3689999999988888776543 33445667789999988754 3443 2456666655433 1
Q ss_pred CCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 154 IRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 154 ~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
..+.. .-.|..+.. |+|+|-+..+.
T Consensus 269 Typsg----~igf~l~s~-~~~~~~~~~p~ 293 (337)
T KOG1562|consen 269 TYPSG----RIGFMLCSK-LKPDGKYKTPG 293 (337)
T ss_pred CCccc----eEEEEEecc-cCCCCCccCCC
Confidence 11111 111333444 99999888754
No 242
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.28 E-value=0.0011 Score=60.14 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=75.5
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchh------------hh------------c------
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPE------------IA------------I------ 117 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~------------~~------------~------ 117 (299)
++.+||+=|||.|.++.++++.. -.+.+.|.|--|+=..+--+.. .+ .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 46799999999999999999983 4789999999886654421110 00 0
Q ss_pred ------CCCCCCEEEEEccHHHHHHhc-CCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 118 ------GYEDSRVILHVCDGSEYLKTV-QSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 118 ------~~~~~rv~v~~~D~~~~l~~~-~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
.-...++.+..||..++-... ..++||+|+...+-.... . -.++++.+.+.|||||+.+ |.|.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~--N--i~~Yi~tI~~lLkpgG~WI-N~GP 203 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE--N--IIEYIETIEHLLKPGGYWI-NFGP 203 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH--H--HHHHHHHHHHHhccCCEEE-ecCC
Confidence 011346888999987764321 147899999753322111 1 1689999999999999554 5544
No 243
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.23 E-value=0.0022 Score=55.38 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=86.1
Q ss_pred CeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhh----cCCCCCCEEEEEccHHHHHHhc-CCCCcc
Q 037807 70 KKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIA----IGYEDSRVILHVCDGSEYLKTV-QSGTFD 144 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~----~~~~~~rv~v~~~D~~~~l~~~-~~~~fD 144 (299)
-.+.|||||-|+++.+++...+...|.+.||--.|.+..++.+.... .+ .-+++.+...++..|+.+. ..++.+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~-~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEG-QYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccc-ccccceeeeccchhhccchhhhcccc
Confidence 46899999999999999987778899999999999999998876552 12 2467889999999998764 234455
Q ss_pred EEEEcCCCCC----CCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 145 AIIIDAFDPI----RPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 145 vIi~D~~~~~----~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
-++.-.+||. .....+.+........-.|++||++.+.+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 5555556653 22345667778888888999999998743
No 244
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.22 E-value=0.00099 Score=54.03 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=45.4
Q ss_pred EEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccH
Q 037807 72 VLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDG 131 (299)
Q Consensus 72 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~ 131 (299)
|||||||.|..+..+++..+..+|+++|.+|.+.+.+++++..++ -++++++....
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~----~~~v~~~~~al 57 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN----LPNVVLLNAAV 57 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEEeee
Confidence 899999999999999887555689999999999999999876541 23577776553
No 245
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.16 E-value=0.0034 Score=57.27 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=38.8
Q ss_pred CCCeEEEEeccccHHHHHHHh-cCCccEEEEEECCHHHHHHHHhhchh
Q 037807 68 NPKKVLLIGGGDGGILREISR-HASVEQIHICEIDTMLINVYKEYFPE 114 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~ 114 (299)
.|++|||+|+|.|..+..+.. .+...++++||.++.++++++.-+..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 688999999999987766554 33578999999999999999987654
No 246
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0027 Score=61.71 Aligned_cols=103 Identities=16% Similarity=0.110 Sum_probs=73.7
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCC---CCc
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQS---GTF 143 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~---~~f 143 (299)
+..+-+||+.||+|.++..++++ +.+|.+||++++.++-|+++...+ .-.+.+++.+-+.+.+...-. ..=
T Consensus 382 ~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~N----gisNa~Fi~gqaE~~~~sl~~~~~~~~ 455 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQIN----GISNATFIVGQAEDLFPSLLTPCCDSE 455 (534)
T ss_pred CCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhc----CccceeeeecchhhccchhcccCCCCC
Confidence 34578999999999999999887 579999999999999999997765 346889999966665543311 233
Q ss_pred c-EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 144 D-AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 144 D-vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
+ ++|+|++..... ..+++.+.+.-++.=++.+
T Consensus 456 ~~v~iiDPpR~Glh------~~~ik~l~~~~~~~rlvyv 488 (534)
T KOG2187|consen 456 TLVAIIDPPRKGLH------MKVIKALRAYKNPRRLVYV 488 (534)
T ss_pred ceEEEECCCccccc------HHHHHHHHhccCccceEEE
Confidence 5 677787654221 4566666655556555554
No 247
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.03 E-value=0.0083 Score=46.71 Aligned_cols=102 Identities=20% Similarity=0.259 Sum_probs=65.5
Q ss_pred EEEEeccccHHHHHHHhcCCc-cEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHH-HHhcCC-CCccEEEE
Q 037807 72 VLLIGGGDGGILREISRHASV-EQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEY-LKTVQS-GTFDAIII 148 (299)
Q Consensus 72 VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~-l~~~~~-~~fDvIi~ 148 (299)
+|++|||.|... .+.+.... ..++++|+++.+++.++..... . ....+.+..+|.... +. ... ..||++..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A---GLGLVDFVVADALGGVLP-FEDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c---CCCceEEEEeccccCCCC-CCCCCceeEEee
Confidence 999999999976 33333221 3788899999999985554321 1 011167888887652 22 112 47999943
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecC
Q 037807 149 DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 149 D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
........ ....+..+.+.|+++|.+++...
T Consensus 126 ~~~~~~~~-----~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 126 LLVLHLLP-----PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred eeehhcCC-----HHHHHHHHHHhcCCCcEEEEEec
Confidence 32211111 37789999999999999887653
No 248
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.02 E-value=0.0059 Score=55.88 Aligned_cols=89 Identities=22% Similarity=0.238 Sum_probs=67.9
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHh-cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHH
Q 037807 54 YQEMITHLPLCSIPNPKKVLLIGGGDGGILREISR-HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGS 132 (299)
Q Consensus 54 Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~ 132 (299)
.+|.+..+ ...+..-.+|.=.|.|+-++.+++ .++..+++++|.||.+++.|++.+... ++|++++++...
T Consensus 12 l~E~i~~L---~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-----~~r~~~v~~~F~ 83 (314)
T COG0275 12 LNEVVELL---APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-----DGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHhc---ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-----CCcEEEEeCcHH
Confidence 45555433 223446789999999999999997 455677999999999999999988654 579999999876
Q ss_pred HHHHhc---CCCCccEEEEcC
Q 037807 133 EYLKTV---QSGTFDAIIIDA 150 (299)
Q Consensus 133 ~~l~~~---~~~~fDvIi~D~ 150 (299)
.+.... ...++|-|++|+
T Consensus 84 ~l~~~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 84 NLAEALKELGIGKVDGILLDL 104 (314)
T ss_pred HHHHHHHhcCCCceeEEEEec
Confidence 654432 246899999876
No 249
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.01 E-value=0.0078 Score=56.07 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=73.1
Q ss_pred CCCCeEEEEeccccHHHHHHHhcC----CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEE--EEccHHHHHHhc--
Q 037807 67 PNPKKVLLIGGGDGGILREISRHA----SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVIL--HVCDGSEYLKTV-- 138 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~----~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v--~~~D~~~~l~~~-- 138 (299)
+....++++|||+|.=.+.+++.. .....+.||||.+.++.+.+.+..- .-|.+++ +.+|..+-+.-.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~----~~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG----NFSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc----cCCCeEEEEEEecHHHHHhhccc
Confidence 345589999999999777666522 1356899999999999999888621 2356666 777765543321
Q ss_pred --CCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHH-hcCCCcEEEEec
Q 037807 139 --QSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAK-ALRPGGAMCIQA 183 (299)
Q Consensus 139 --~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~-~LkpgGvlv~~~ 183 (299)
......+|+.=... .+.-..--...|++.+++ .|+|||.|++-.
T Consensus 151 ~~~~~~~r~~~flGSs-iGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 151 PENRSRPTTILWLGSS-IGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccccCCccEEEEeCcc-ccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 12345666652211 111011112679999999 999999998844
No 250
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.91 E-value=0.0017 Score=55.70 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=72.3
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
..++||++|.|+|..+...++. +...|+..|++|..++..+-+...+ .-.+.+...|..- . +..||+|+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~an-----gv~i~~~~~d~~g----~-~~~~Dl~L 147 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAAN-----GVSILFTHADLIG----S-PPAFDLLL 147 (218)
T ss_pred ccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhc-----cceeEEeeccccC----C-CcceeEEE
Confidence 3689999999999999988776 4688999999999888888776554 3467777777543 2 67899999
Q ss_pred E-cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcc
Q 037807 148 I-DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLW 187 (299)
Q Consensus 148 ~-D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~ 187 (299)
. |.+.....+ ...+. +++.|+..|.-++ .++|.
T Consensus 148 agDlfy~~~~a-----~~l~~-~~~~l~~~g~~vl-vgdp~ 181 (218)
T COG3897 148 AGDLFYNHTEA-----DRLIP-WKDRLAEAGAAVL-VGDPG 181 (218)
T ss_pred eeceecCchHH-----HHHHH-HHHHHHhCCCEEE-EeCCC
Confidence 7 655432111 22333 6777888887665 33443
No 251
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.90 E-value=0.0069 Score=53.02 Aligned_cols=117 Identities=11% Similarity=0.128 Sum_probs=88.6
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+..++.||||--|.++.++.+...+..++.+|+++.-++.|.++++..+ ..+++++..+|+..-+.. +...|+|+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~---l~~~i~vr~~dgl~~l~~--~d~~d~iv 90 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN---LSERIDVRLGDGLAVLEL--EDEIDVIV 90 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC---CcceEEEeccCCccccCc--cCCcCEEE
Confidence 4455999999999999999987678999999999999999999998753 257999999999877763 56899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHH
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLID 198 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~ 198 (299)
+-.-.. . .-.++++.-.+.|+.=-.+++| |-.+...+++.+.
T Consensus 91 IAGMGG-----~-lI~~ILee~~~~l~~~~rlILQ---Pn~~~~~LR~~L~ 132 (226)
T COG2384 91 IAGMGG-----T-LIREILEEGKEKLKGVERLILQ---PNIHTYELREWLS 132 (226)
T ss_pred EeCCcH-----H-HHHHHHHHhhhhhcCcceEEEC---CCCCHHHHHHHHH
Confidence 754322 1 1267888888888865678886 4334444444433
No 252
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.88 E-value=0.0036 Score=57.85 Aligned_cols=88 Identities=20% Similarity=0.188 Sum_probs=60.3
Q ss_pred HHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHH
Q 037807 55 QEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEY 134 (299)
Q Consensus 55 ~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~ 134 (299)
.|.+..+. ..+...++|.=.|.|+-+..+++..+..+++++|.|+++++.+++.+... .+|+.++.++..++
T Consensus 10 ~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-----~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 10 KEVLEALN---PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-----DDRFIFIHGNFSNL 81 (310)
T ss_dssp HHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-----CTTEEEEES-GGGH
T ss_pred HHHHHhhC---cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-----cceEEEEeccHHHH
Confidence 45555443 23456789988899999999997533489999999999999999987643 67999999987654
Q ss_pred ---HHhc-CCCCccEEEEcC
Q 037807 135 ---LKTV-QSGTFDAIIIDA 150 (299)
Q Consensus 135 ---l~~~-~~~~fDvIi~D~ 150 (299)
+... ...++|.|++|+
T Consensus 82 ~~~l~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 82 DEYLKELNGINKVDGILFDL 101 (310)
T ss_dssp HHHHHHTTTTS-EEEEEEE-
T ss_pred HHHHHHccCCCccCEEEEcc
Confidence 4433 346899999976
No 253
>PRK11524 putative methyltransferase; Provisional
Probab=96.86 E-value=0.0038 Score=57.18 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=48.0
Q ss_pred CCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCC-----CC-------CCcHHHHHHHHHhcCCCcEEEEec
Q 037807 120 EDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPG-----HD-------LFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 120 ~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~-----~~-------l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+....+++++|..++++..+++++|+|++|++...+.. .. -+..+++..+.++|||||.+++..
T Consensus 5 ~~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 5 GNEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred cCCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 34566899999999998776789999999987543110 00 012468899999999999999864
No 254
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.83 E-value=0.00054 Score=59.28 Aligned_cols=88 Identities=25% Similarity=0.397 Sum_probs=64.0
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
.|.++||||+|+|.++..++.+. ++|.+.|++..|....++. +.+++ -..+|++. +-+||+|.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk-----------~ynVl--~~~ew~~t--~~k~dli~ 174 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK-----------NYNVL--TEIEWLQT--DVKLDLIL 174 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc-----------CCcee--eehhhhhc--CceeehHH
Confidence 57899999999999999887664 7789999999998866652 12222 12445542 56899998
Q ss_pred E-cC----CCCCCCCCCCCcHHHHHHHHHhcCC-CcEEEE
Q 037807 148 I-DA----FDPIRPGHDLFEGPFFELVAKALRP-GGAMCI 181 (299)
Q Consensus 148 ~-D~----~~~~~~~~~l~t~ef~~~~~~~Lkp-gGvlv~ 181 (299)
+ +. ++| -..++.+..+|+| +|..++
T Consensus 175 clNlLDRc~~p---------~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 175 CLNLLDRCFDP---------FKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred HHHHHHhhcCh---------HHHHHHHHHHhccCCCcEEE
Confidence 7 22 333 5678999999999 887665
No 255
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.82 E-value=0.0021 Score=57.10 Aligned_cols=82 Identities=21% Similarity=0.201 Sum_probs=52.2
Q ss_pred CeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCC-----CCEEEEEccHHHHHHhcCCCCcc
Q 037807 70 KKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYED-----SRVILHVCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~-----~rv~v~~~D~~~~l~~~~~~~fD 144 (299)
.+|||.=+|-|.-+.-++.. + .+|+++|-+|-+..+.+.-+.......+. .|++++.+|..+|++ .+.+.||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~-G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL-G-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH-T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CHSS--S
T ss_pred CEEEECCCcchHHHHHHHcc-C-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hcCCCCC
Confidence 48999999999888877765 3 47999999999998888765544221111 489999999999998 3478999
Q ss_pred EEEEcCCCCC
Q 037807 145 AIIIDAFDPI 154 (299)
Q Consensus 145 vIi~D~~~~~ 154 (299)
+|.+|+-.|.
T Consensus 154 VVY~DPMFp~ 163 (234)
T PF04445_consen 154 VVYFDPMFPE 163 (234)
T ss_dssp EEEE--S---
T ss_pred EEEECCCCCC
Confidence 9999986654
No 256
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0095 Score=52.76 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=71.1
Q ss_pred HHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEc-cHHH
Q 037807 55 QEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVC-DGSE 133 (299)
Q Consensus 55 ~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~-D~~~ 133 (299)
..++.+..+. .+.+.+||||.-||+++-.++++ +.+.|.+||..-..+..--+ ++||+.++.. +++.
T Consensus 68 ~~ale~F~l~--~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR---------~d~rV~~~E~tN~r~ 135 (245)
T COG1189 68 EKALEEFELD--VKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLR---------NDPRVIVLERTNVRY 135 (245)
T ss_pred HHHHHhcCcC--CCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHh---------cCCcEEEEecCChhh
Confidence 3455665543 57889999999999999999988 57899999987665443322 3778776554 4333
Q ss_pred HHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 134 YLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 134 ~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
.-.+.-.+..|+|++|.+.-. ....+..+...|+++|-++.
T Consensus 136 l~~~~~~~~~d~~v~DvSFIS-------L~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 136 LTPEDFTEKPDLIVIDVSFIS-------LKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CCHHHcccCCCeEEEEeehhh-------HHHHHHHHHHhcCCCceEEE
Confidence 222211347899999976431 14455566666676665554
No 257
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.77 E-value=0.01 Score=51.74 Aligned_cols=116 Identities=22% Similarity=0.234 Sum_probs=62.1
Q ss_pred chhhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHh---cC-CccEEEEEECCHHHHH-HHHhhchhhhcCCCCCCE
Q 037807 50 DECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISR---HA-SVEQIHICEIDTMLIN-VYKEYFPEIAIGYEDSRV 124 (299)
Q Consensus 50 de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~---~~-~~~~v~~VEid~~vi~-~a~~~~~~~~~~~~~~rv 124 (299)
|-..|+|++-.+ +|..|+++|.-.|+.+...+. .. +..+|.+||||-.-.. .+.+.-+. .+|+
T Consensus 20 Dm~~~qeli~~~------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~------~~rI 87 (206)
T PF04989_consen 20 DMVAYQELIWEL------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM------SPRI 87 (206)
T ss_dssp HHHHHHHHHHHH--------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTE
T ss_pred HHHHHHHHHHHh------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc------cCce
Confidence 445677776543 789999999999998877654 22 4579999999754332 22222121 3899
Q ss_pred EEEEccHHH--HHHhc----CCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 125 ILHVCDGSE--YLKTV----QSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 125 ~v~~~D~~~--~l~~~----~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+++.||..+ .+.+. ......+||.|+..... ....-++.....+++|+.+++.
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~-----hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHE-----HVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS----S-----SHHHHHHHHHHT--TT-EEEET
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHH-----HHHHHHHHhCccCCCCCEEEEE
Confidence 999999853 22221 12355688888763211 1245567788999999999984
No 258
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.76 E-value=0.017 Score=54.55 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=67.8
Q ss_pred CCeEEEEeccccH-HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEc-cHHHHHHh-cCCCCccE
Q 037807 69 PKKVLLIGGGDGG-ILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVC-DGSEYLKT-VQSGTFDA 145 (299)
Q Consensus 69 ~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~-D~~~~l~~-~~~~~fDv 145 (299)
..+|+++|+|.=+ ++..+++..+..+|+++|++++-+++|++.+... .+..... |...-+.+ .....+|+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-------~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-------VVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-------EeecCccccHHHHHHHHhCCCCCCE
Confidence 3489999999844 4466778778899999999999999999966421 1111111 33333322 22346999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+|--.- +...+..+.+.++++|.+++-.
T Consensus 242 vie~~G----------~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 242 VIEAVG----------SPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred EEECCC----------CHHHHHHHHHHhcCCCEEEEEe
Confidence 995433 2567899999999999988754
No 259
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.002 Score=62.33 Aligned_cols=105 Identities=18% Similarity=0.277 Sum_probs=84.2
Q ss_pred CCCeEEEEeccccHHHHHHHh-cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc--CCCCcc
Q 037807 68 NPKKVLLIGGGDGGILREISR-HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV--QSGTFD 144 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~~fD 144 (299)
++.+||+.=+++|.-+...++ .+++.+|++-|.|+..++..+++...+. .+..++....|+...+-.. ....||
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~---v~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG---VEDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC---chhhcccccchHHHHHHhccccccccc
Confidence 456899988888887666654 6788999999999999999999876652 2467889999998766544 237899
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+|=+|++... ..|++.+.+.++.||+|.+.+
T Consensus 186 vIDLDPyGs~--------s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 186 VIDLDPYGSP--------SPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred eEecCCCCCc--------cHHHHHHHHHhhcCCEEEEEe
Confidence 9999976532 569999999999999998854
No 260
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.73 E-value=0.0054 Score=50.12 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=53.0
Q ss_pred CCCCeEEEEeccccHHHHHHHh-----cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCC
Q 037807 67 PNPKKVLLIGGGDGGILREISR-----HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSG 141 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~-----~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~ 141 (299)
.+...|+|+|+|-|.+++.++. . ...+|++||.++..++.+.+........+ ..+++...++...... ..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~ 98 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDL-EKRLSFIQGDIADESS---SD 98 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchh-hccchhhccchhhhcc---cC
Confidence 4578999999999999999987 5 35789999999999999998766542111 2355555555433321 33
Q ss_pred CccEEE
Q 037807 142 TFDAII 147 (299)
Q Consensus 142 ~fDvIi 147 (299)
..++++
T Consensus 99 ~~~~~v 104 (141)
T PF13679_consen 99 PPDILV 104 (141)
T ss_pred CCeEEE
Confidence 445555
No 261
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.0028 Score=52.84 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=71.1
Q ss_pred HHHHHhhcccCCCC---CCeEEEEeccccHHHHH-HHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEcc
Q 037807 55 QEMITHLPLCSIPN---PKKVLLIGGGDGGILRE-ISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCD 130 (299)
Q Consensus 55 ~e~l~~~~l~~~~~---~~~VL~IG~G~G~~~~~-l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D 130 (299)
.|.|+...+ .+++ .++||++|+|--+++-- ++...+..+|...|-+++.++-.++-...+ ....-.+..+..-+
T Consensus 14 eeala~~~l-~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n-~~s~~tsc~vlrw~ 91 (201)
T KOG3201|consen 14 EEALAWTIL-RDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN-MASSLTSCCVLRWL 91 (201)
T ss_pred HHHHHHHHH-hchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc-cccccceehhhHHH
Confidence 455655433 2332 57899999996555544 445556789999999999999888864432 01111233222222
Q ss_pred HHHHHHhcCCCCccEEEE-cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 131 GSEYLKTVQSGTFDAIII-DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 131 ~~~~l~~~~~~~fDvIi~-D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
...-.......+||.|++ |..--.. +-....+.+++.|+|.|.-++.
T Consensus 92 ~~~aqsq~eq~tFDiIlaADClFfdE-----~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 92 IWGAQSQQEQHTFDIILAADCLFFDE-----HHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred HhhhHHHHhhCcccEEEeccchhHHH-----HHHHHHHHHHHHhCcccceeEe
Confidence 211111112468999997 4321100 1245677789999999986653
No 262
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.59 E-value=0.018 Score=52.10 Aligned_cols=126 Identities=13% Similarity=0.155 Sum_probs=67.0
Q ss_pred CCCeEEEEecccc--HHHHHHHh-cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCC--EEEEEccHHHH---HHh--
Q 037807 68 NPKKVLLIGGGDG--GILREISR-HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSR--VILHVCDGSEY---LKT-- 137 (299)
Q Consensus 68 ~~~~VL~IG~G~G--~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~r--v~v~~~D~~~~---l~~-- 137 (299)
.-...||||||-= ....++++ ..+..+|+.||.||.++..++..+.. +++ ..++.+|.++- +..
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~------~~~g~t~~v~aD~r~p~~iL~~p~ 141 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD------NPRGRTAYVQADLRDPEAILAHPE 141 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-------TTSEEEEEE--TT-HHHHHCSHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC------CCCccEEEEeCCCCCHHHHhcCHH
Confidence 4578999999943 35677765 33468999999999999999988764 345 89999998752 221
Q ss_pred c-----CCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHh
Q 037807 138 V-----QSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCH 201 (299)
Q Consensus 138 ~-----~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~ 201 (299)
. -++..=++++.......... --...++.++..|.||..|++...+.-..++....+.+.++
T Consensus 142 ~~~~lD~~rPVavll~~vLh~v~D~~--dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~ 208 (267)
T PF04672_consen 142 VRGLLDFDRPVAVLLVAVLHFVPDDD--DPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYA 208 (267)
T ss_dssp HHCC--TTS--EEEECT-GGGS-CGC--THHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHH
T ss_pred HHhcCCCCCCeeeeeeeeeccCCCcc--CHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 1 02223344432211111100 01788999999999999998865333233333333444443
No 263
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.50 E-value=0.0059 Score=54.68 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=65.7
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+....|-|+|||.+-++. .. ...|...|+- ..+-+|+..|.++... ++++.|++
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~-------------------a~~~~V~~cDm~~vPl--~d~svDva 232 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE--RHKVHSFDLV-------------------AVNERVIACDMRNVPL--EDESVDVA 232 (325)
T ss_pred cCceEEEecccchhhhhh---cc--ccceeeeeee-------------------cCCCceeeccccCCcC--ccCcccEE
Confidence 345678999999998886 11 1345655541 1234566677766322 37899999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe-cCCcccchHHHHHHHHHH
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ-AESLWFQQFSVQHLIDDC 200 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~-~~s~~~~~~~~~~~~~~l 200 (299)
++.++--. .. -.+|+.+++|+|++||.+.+- ..|-+.+-..|.+.+..|
T Consensus 233 V~CLSLMg-tn----~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~l 282 (325)
T KOG3045|consen 233 VFCLSLMG-TN----LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKL 282 (325)
T ss_pred EeeHhhhc-cc----HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHc
Confidence 98654321 11 178999999999999988764 345555544454444444
No 264
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.46 E-value=0.0071 Score=54.03 Aligned_cols=74 Identities=19% Similarity=0.182 Sum_probs=53.3
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+.+.+|+|||||.==++.-....++...+.+.|||..+++....++... .++.++...|...- .++...|+.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-----~~~~~~~v~Dl~~~---~~~~~~Dla 175 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-----GVPHDARVRDLLSD---PPKEPADLA 175 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-----T-CEEEEEE-TTTS---HTTSEESEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-----CCCcceeEeeeecc---CCCCCcchh
Confidence 5689999999998777766565555579999999999999999998765 46788888886443 235778998
Q ss_pred EE
Q 037807 147 II 148 (299)
Q Consensus 147 i~ 148 (299)
++
T Consensus 176 Ll 177 (251)
T PF07091_consen 176 LL 177 (251)
T ss_dssp EE
T ss_pred hH
Confidence 86
No 265
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.0028 Score=58.96 Aligned_cols=110 Identities=20% Similarity=0.236 Sum_probs=65.3
Q ss_pred CCCeEEEEeccccHHHHHHHh-cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGDGGILREISR-HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.|+++||+|.|.|..+..+-. .|..++++.+|.+|.+-++...-.....-...+-|..=+..|-..+ . ....|++|
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~l-p--~ad~ytl~ 189 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSL-P--AADLYTLA 189 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCC-C--ccceeehh
Confidence 478999999999977666554 5667889999999987665554322111111112222222331111 1 24678888
Q ss_pred EE-cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 147 II-DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 147 i~-D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
|+ |---|.+....+ ...++.+.+.++|||.||+-
T Consensus 190 i~~~eLl~d~~ek~i--~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 190 IVLDELLPDGNEKPI--QVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred hhhhhhccccCcchH--HHHHHHHHHhccCCCeEEEE
Confidence 86 322232222222 23678888999999988874
No 266
>PTZ00357 methyltransferase; Provisional
Probab=96.40 E-value=0.016 Score=58.34 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=69.3
Q ss_pred eEEEEeccccHHHHHHHhcC----CccEEEEEECCHHHHHHHHh---hchhhhc--CCCCCCEEEEEccHHHHHHhc---
Q 037807 71 KVLLIGGGDGGILREISRHA----SVEQIHICEIDTMLINVYKE---YFPEIAI--GYEDSRVILHVCDGSEYLKTV--- 138 (299)
Q Consensus 71 ~VL~IG~G~G~~~~~l~~~~----~~~~v~~VEid~~vi~~a~~---~~~~~~~--~~~~~rv~v~~~D~~~~l~~~--- 138 (299)
.|+++|+|=|-+....++.. -..+|.+||-++..+...+. +...+.. .....+|+++..|.+.|-...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 58999999999988776521 13479999999663333322 2333311 001357999999999984210
Q ss_pred ----C--CCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCC----CcE
Q 037807 139 ----Q--SGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRP----GGA 178 (299)
Q Consensus 139 ----~--~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~Lkp----gGv 178 (299)
+ -+++|+||+.+-...|..+ .++|-+..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNE--LSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNE--LSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhccccccc--CCHHHHHHHHHhhhhhcccccc
Confidence 0 1379999986654433322 358888888888886 776
No 267
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.40 E-value=0.0082 Score=55.26 Aligned_cols=81 Identities=16% Similarity=0.104 Sum_probs=46.1
Q ss_pred CCeEEEEeccccHHHHHH-HhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccH----HHHHHhcCCCCc
Q 037807 69 PKKVLLIGGGDGGILREI-SRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDG----SEYLKTVQSGTF 143 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l-~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~----~~~l~~~~~~~f 143 (299)
..++||||+|.-++=--| ++.. .-++++.|||+..++.|+++...+. .+ ..+++++...- +..+.. ..+.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~-~L-~~~I~l~~~~~~~~i~~~i~~-~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNP-NL-ESRIELRKQKNPDNIFDGIIQ-PNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT--T--TTTEEEEE--ST-SSTTTSTT---S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhcc-cc-ccceEEEEcCCccccchhhhc-cccee
Confidence 468999999987663222 3433 3689999999999999999987651 11 46888876632 222222 25789
Q ss_pred cEEEEcCCCC
Q 037807 144 DAIIIDAFDP 153 (299)
Q Consensus 144 DvIi~D~~~~ 153 (299)
|+.+|+++-.
T Consensus 179 dftmCNPPFy 188 (299)
T PF05971_consen 179 DFTMCNPPFY 188 (299)
T ss_dssp EEEEE-----
T ss_pred eEEecCCccc
Confidence 9999987654
No 268
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.40 E-value=0.027 Score=52.73 Aligned_cols=93 Identities=23% Similarity=0.257 Sum_probs=63.7
Q ss_pred CCCeEEEEecc-ccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGG-DGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+.++|+++|.| -|.++..+++.-+ .+|++++.+++-.+.|++.-.. .++..--.+.++.. .+.+|+|
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd----------~~i~~~~~~~~~~~-~~~~d~i 233 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD----------HVINSSDSDALEAV-KEIADAI 233 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc----------EEEEcCCchhhHHh-HhhCcEE
Confidence 46899999987 3446677777555 7999999999999999986321 22221112223322 2349999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|.-.. + .-+....+.|+++|.+++-.
T Consensus 234 i~tv~-~----------~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 234 IDTVG-P----------ATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EECCC-h----------hhHHHHHHHHhcCCEEEEEC
Confidence 97655 3 23667788999999999754
No 269
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.32 E-value=0.035 Score=52.13 Aligned_cols=135 Identities=14% Similarity=0.175 Sum_probs=88.8
Q ss_pred CCCCCeEEEEeccccHHHHHHHh--cCC--ccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHh----
Q 037807 66 IPNPKKVLLIGGGDGGILREISR--HAS--VEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKT---- 137 (299)
Q Consensus 66 ~~~~~~VL~IG~G~G~~~~~l~~--~~~--~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~---- 137 (299)
..+..+|||+++..|+=+..++. |.. ...|++=|.|+.-+...+.-+... ..+.+.+...|+..+-..
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l----~~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL----PSPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc----CCcceeeecccceecccccccc
Confidence 34678999999999998877765 322 237899999998777766654332 345666666665433211
Q ss_pred c---CCCCccEEEEcCCCCC-CC---C-------------CCC--CcHHHHHHHHHhcCCCcEEEEecC--CcccchHHH
Q 037807 138 V---QSGTFDAIIIDAFDPI-RP---G-------------HDL--FEGPFFELVAKALRPGGAMCIQAE--SLWFQQFSV 193 (299)
Q Consensus 138 ~---~~~~fDvIi~D~~~~~-~~---~-------------~~l--~t~ef~~~~~~~LkpgGvlv~~~~--s~~~~~~~~ 193 (299)
. ....||-|++|.+-.. +. . ..| .....+....+.||+||.+|-.+. +|.-.....
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV 308 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVV 308 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHH
Confidence 0 1357999999876321 10 0 111 234567788899999999998764 344455677
Q ss_pred HHHHHHHhhhc
Q 037807 194 QHLIDDCHRIF 204 (299)
Q Consensus 194 ~~~~~~l~~~F 204 (299)
.++++.+...|
T Consensus 309 ~~~L~~~~~~~ 319 (375)
T KOG2198|consen 309 QEALQKVGGAV 319 (375)
T ss_pred HHHHHHhcCcc
Confidence 77887777766
No 270
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.31 E-value=0.035 Score=54.93 Aligned_cols=109 Identities=17% Similarity=0.251 Sum_probs=64.3
Q ss_pred CCCeEEEEeccccH-HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhh-cCCCCCC------EEEEEccHH----HHH
Q 037807 68 NPKKVLLIGGGDGG-ILREISRHASVEQIHICEIDTMLINVYKEYFPEIA-IGYEDSR------VILHVCDGS----EYL 135 (299)
Q Consensus 68 ~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-~~~~~~r------v~v~~~D~~----~~l 135 (299)
.+.+|+++|+|.=+ .+...++..+. +|+++|.+++..+.+++.=.... ....+.. .+-...|.. +.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 58899999999755 44556676665 79999999999999998421100 0000000 000111111 111
Q ss_pred HhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 136 KTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 136 ~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
.+. -+.+|+||.-...|..+++.+ +.+.+.+.+||||+++.-
T Consensus 243 ~~~-~~gaDVVIetag~pg~~aP~l----it~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 243 AEQ-AKEVDIIITTALIPGKPAPKL----ITAEMVASMKPGSVIVDL 284 (509)
T ss_pred Hhc-cCCCCEEEECCCCCcccCcch----HHHHHHHhcCCCCEEEEE
Confidence 111 246999998765554333322 247788899999998753
No 271
>PRK13699 putative methylase; Provisional
Probab=96.29 E-value=0.007 Score=53.70 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=44.9
Q ss_pred EEEEccHHHHHHhcCCCCccEEEEcCCCCCCC----C----CC---CCcHHHHHHHHHhcCCCcEEEEe
Q 037807 125 ILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRP----G----HD---LFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 125 ~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~----~----~~---l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+++.+|+.+.++..++++.|+||.|++...+. . .. -+..+++.+++|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 68899999999988889999999998774321 0 01 12356788999999999998864
No 272
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.25 E-value=0.06 Score=46.15 Aligned_cols=118 Identities=12% Similarity=0.125 Sum_probs=70.7
Q ss_pred CCCeEEEEeccccHHHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEc-cHH---H---HHHhcC
Q 037807 68 NPKKVLLIGGGDGGILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVC-DGS---E---YLKTVQ 139 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~-D~~---~---~l~~~~ 139 (299)
+..+|||+|+..|.-+.-+.+. .+..-|.+|||-.- +| -+.++++.+ |.. . ..+..+
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p-------~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EP-------PEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cC-------CCCcccccccccCCHHHHHHHHHhCC
Confidence 4678999999999988876653 36778999998321 11 234555554 332 1 222335
Q ss_pred CCCccEEEEcCCC-CCCCC--CCCCcHH----HHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhc
Q 037807 140 SGTFDAIIIDAFD-PIRPG--HDLFEGP----FFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIF 204 (299)
Q Consensus 140 ~~~fDvIi~D~~~-~~~~~--~~l~t~e----f~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F 204 (299)
+.+.|+|++|... +.|.. .+.-..+ .+.-....+.|+|.|++.. |... .-..+.+.|.++|
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~---w~g~-e~~~l~r~l~~~f 201 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL---WDGS-EEALLQRRLQAVF 201 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE---ecCC-chHHHHHHHHHHh
Confidence 7889999999754 22321 1111111 2222245688999999853 3222 2345667777777
No 273
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.24 E-value=0.034 Score=53.07 Aligned_cols=116 Identities=16% Similarity=0.245 Sum_probs=85.2
Q ss_pred CCCeEEEEeccccHHHHHHHh-cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGDGGILREISR-HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+..||||+.+-.|+=+.+++. ......|.+-|.+..-+...+.++..++ ..+..+.+.|+.+|-...-..+||-|
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG----v~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG----VTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC----CCceEEEccCcccccccccCccccee
Confidence 458999999998887777665 2334678999999999999999988763 45778889999887533213489999
Q ss_pred EEcCCCCC-CC--CCC-C--------------CcHHHHHHHHHhcCCCcEEEEecCCcc
Q 037807 147 IIDAFDPI-RP--GHD-L--------------FEGPFFELVAKALRPGGAMCIQAESLW 187 (299)
Q Consensus 147 i~D~~~~~-~~--~~~-l--------------~t~ef~~~~~~~LkpgGvlv~~~~s~~ 187 (299)
++|++... |. ... . +.++.+....+.+++||+||-.+.|..
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 99997643 11 111 1 125677778889999999998765543
No 274
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.18 E-value=0.021 Score=46.76 Aligned_cols=86 Identities=21% Similarity=0.269 Sum_probs=57.8
Q ss_pred EEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCC-CCCCCCCCC-----cHHHHH
Q 037807 94 QIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFD-PIRPGHDLF-----EGPFFE 167 (299)
Q Consensus 94 ~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~-~~~~~~~l~-----t~ef~~ 167 (299)
+|.+.||.++.++.+++.+...+. ..|++++...=.....-.+.++.|+++.++-. |.+. .... |...++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~---~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggD-k~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL---EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGD-KSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS--TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC---CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCC-CCCCcCcHHHHHHHH
Confidence 588999999999999999876521 24899998765543332222489999998743 4332 2222 467889
Q ss_pred HHHHhcCCCcEEEEec
Q 037807 168 LVAKALRPGGAMCIQA 183 (299)
Q Consensus 168 ~~~~~LkpgGvlv~~~ 183 (299)
.+.+.|++||++++-.
T Consensus 77 ~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 77 AALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHEEEEEEEEEEE
T ss_pred HHHHhhccCCEEEEEE
Confidence 9999999999988754
No 275
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.17 E-value=0.025 Score=54.95 Aligned_cols=104 Identities=18% Similarity=0.274 Sum_probs=73.8
Q ss_pred CeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEE-
Q 037807 70 KKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIII- 148 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~- 148 (299)
-++|.+|||.-.+..++.+- +...|+.+|+|+.+++.....-.. +.+-.++...|.....- ++++||+||.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~-----~~~~~~~~~~d~~~l~f--edESFdiVIdk 121 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAK-----ERPEMQMVEMDMDQLVF--EDESFDIVIDK 121 (482)
T ss_pred ceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhcccc-----CCcceEEEEecchhccC--CCcceeEEEec
Confidence 38999999998777776664 467899999999999977654321 45778888888876544 3689999997
Q ss_pred ---cCCCCCCCCCCC---CcHHHHHHHHHhcCCCcEEEEe
Q 037807 149 ---DAFDPIRPGHDL---FEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 149 ---D~~~~~~~~~~l---~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
|....... ..+ .....+..+.+.|++||+++.-
T Consensus 122 GtlDal~~de~-a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 122 GTLDALFEDED-ALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred CccccccCCch-hhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 32222111 111 2345678899999999987653
No 276
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.10 E-value=0.02 Score=48.29 Aligned_cols=107 Identities=21% Similarity=0.324 Sum_probs=66.0
Q ss_pred EEEeccccHHHHHHHhcCC-ccEEEEEECCHH--HHHHHH---hhchhhhcCCCCCCEEEE-EccHHHHHHhc--CCCCc
Q 037807 73 LLIGGGDGGILREISRHAS-VEQIHICEIDTM--LINVYK---EYFPEIAIGYEDSRVILH-VCDGSEYLKTV--QSGTF 143 (299)
Q Consensus 73 L~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~--vi~~a~---~~~~~~~~~~~~~rv~v~-~~D~~~~l~~~--~~~~f 143 (299)
|.+|=|+-.++..++++.+ ..++++--.|.+ +.+... +++..+ ....+++. -.|+.+.-+.. ..++|
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L----~~~g~~V~~~VDat~l~~~~~~~~~~F 76 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEEL----RELGVTVLHGVDATKLHKHFRLKNQRF 76 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHH----hhcCCccccCCCCCcccccccccCCcC
Confidence 6799999999999998644 556665555543 333322 222222 34455543 34555433222 35789
Q ss_pred cEEEEcCCCCCCCC----C-----CCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 144 DAIIIDAFDPIRPG----H-----DLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 144 DvIi~D~~~~~~~~----~-----~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|.||.+.|...... . ...-..||+.+.+.|+++|.+.+..
T Consensus 77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99999987653110 0 1123789999999999999777643
No 277
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.01 E-value=0.055 Score=50.49 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=60.7
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
...+||++|+|. |..+..+++..+..+|++++.+++-.+.+++. ... .-+.....|..+.... .+.+|+|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~------~vi~~~~~~~~~~~~~--~g~~D~v 239 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GAD------KLVNPQNDDLDHYKAE--KGYFDVS 239 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCc------EEecCCcccHHHHhcc--CCCCCEE
Confidence 357899998653 33445566766666899999999999999873 211 0011111233333332 2459988
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+- .... ...++.+.+.|+++|.++.-.
T Consensus 240 id-~~G~---------~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 240 FE-VSGH---------PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EE-CCCC---------HHHHHHHHHHhhcCCEEEEEc
Confidence 73 3221 346778889999999998743
No 278
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.00 E-value=0.061 Score=51.13 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=67.6
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEcc-HHHHHHhc-CCCCcc
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCD-GSEYLKTV-QSGTFD 144 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D-~~~~l~~~-~~~~fD 144 (299)
+..+||++|+|. |..+..+++..+..+|++++.+++..+.++++... .-+.....+ ..+-+.+. ..+.+|
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHHcCCCCCC
Confidence 457899999887 77788888876666799999999999999986421 112222222 33333322 234699
Q ss_pred EEEEcCCCCCC--CCCC---------CCcHHHHHHHHHhcCCCcEEEEec
Q 037807 145 AIIIDAFDPIR--PGHD---------LFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 145 vIi~D~~~~~~--~~~~---------l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+|+--...... .-.. --+...+..+.+.|+++|.++...
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 88753211100 0000 001446788889999999998754
No 279
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.97 E-value=0.098 Score=49.84 Aligned_cols=99 Identities=18% Similarity=0.301 Sum_probs=57.0
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.+.+|++||+|. |..+...++..+. +|+++|.+++-.+.+.+.+.. .+.....+... +.+. -..+|+|
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~~~~-l~~~-l~~aDvV 234 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG--------RIHTRYSNAYE-IEDA-VKRADLL 234 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc--------eeEeccCCHHH-HHHH-HccCCEE
Confidence 467899998873 3334444454454 699999998877665544321 12222222222 2222 2468999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
|....-+....+.+.+.+.+ +.++++++++-
T Consensus 235 I~a~~~~g~~~p~lit~~~l----~~mk~g~vIvD 265 (370)
T TIGR00518 235 IGAVLIPGAKAPKLVSNSLV----AQMKPGAVIVD 265 (370)
T ss_pred EEccccCCCCCCcCcCHHHH----hcCCCCCEEEE
Confidence 97654333333445566554 45789887764
No 280
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.94 E-value=0.037 Score=50.15 Aligned_cols=105 Identities=20% Similarity=0.245 Sum_probs=70.3
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+.++|+++|--+- ++..++-..-.++|.+||||+..+..-.+..... .-.+++.+.-|.++-+.+.-.++||+++
T Consensus 152 ~gK~I~vvGDDDL-tsia~aLt~mpk~iaVvDIDERli~fi~k~aee~----g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVGDDDL-TSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL----GYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEcCchh-hHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh----CccchhheeehhcccChHHHHhhCCeee
Confidence 3678999995443 3333332222378999999999999888876655 2356888888988766543368999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCC---cEEEEe
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPG---GAMCIQ 182 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~Lkpg---Gvlv~~ 182 (299)
.|++..... -+-|+..=-..|+.- |.+-+.
T Consensus 227 TDPpeTi~a-----lk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 227 TDPPETIKA-----LKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred cCchhhHHH-----HHHHHhccHHHhcCCCccceEeee
Confidence 886553210 144555556678776 666553
No 281
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.93 E-value=0.057 Score=50.01 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=65.2
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCccE
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~fDv 145 (299)
...+||++|+|. |..+..+++..+..+|+.+|+++.-+++||+ |..-.- .....-. ...+..+.++.. .+..+|+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~-~~~~~~~-~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVT-DPSSHKS-SPQELAELVEKALGKKQPDV 245 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEE-eeccccc-cHHHHHHHHHhhccccCCCe
Confidence 467999999997 4455556777789999999999999999999 542100 0011111 233444444432 2356888
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
.+--+-. ..-++..-..++.+|.+++
T Consensus 246 ~~dCsG~----------~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 246 TFDCSGA----------EVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred EEEccCc----------hHHHHHHHHHhccCCEEEE
Confidence 8743221 3346777889999999554
No 282
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=95.77 E-value=0.099 Score=48.68 Aligned_cols=99 Identities=14% Similarity=0.221 Sum_probs=60.1
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
...+||+.|+|. |..+..+++..+...|++++.+++-.+.+++. .. +.-+.....+..+..+......+|.+
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GA------MQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC------ceEecCcccCHHHHHHHhcCCCCCeE
Confidence 467999997644 22334456666666688999999988888653 21 00011111222222222223468866
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
++|.... ...+....+.|+++|.+++-
T Consensus 233 v~d~~G~---------~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 233 ILETAGV---------PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EEECCCC---------HHHHHHHHHHhhcCCEEEEE
Confidence 6675442 45678888999999998874
No 283
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.75 E-value=0.093 Score=49.25 Aligned_cols=99 Identities=19% Similarity=0.192 Sum_probs=62.3
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCccE
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~fDv 145 (299)
...+||+.|+|. |..+.++++..+..+|++++.+++-.+.+++. .. +.-+.....|..+.+.+. ....+|+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA------THTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 467899998643 33445567766666799999999999888763 21 111122223444444433 2346898
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+ |.... .+.++...+.|+++|.+++-.
T Consensus 249 vi-d~~g~---------~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 249 VI-DAVGR---------PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred EE-ECCCC---------HHHHHHHHHHhccCCEEEEEC
Confidence 87 33221 345777888999999988643
No 284
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.67 E-value=0.027 Score=51.36 Aligned_cols=120 Identities=16% Similarity=0.147 Sum_probs=76.1
Q ss_pred eEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcC
Q 037807 71 KVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDA 150 (299)
Q Consensus 71 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~ 150 (299)
+|+++.||.|++...+.+. +.+.+.++|+|+..++..+++++.. ++.+|..++....-...+|+|+.++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~~----------~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPNK----------LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCCC----------CccCccccCchhhcCCCCCEEEeCC
Confidence 6999999999998877665 4677899999999999999987531 5566766654321035699999977
Q ss_pred CCCC----CC-------CCCCCcHHHHHHHHHhcCCCcEEEEecCCccc--chHHHHHHHHHHhhh
Q 037807 151 FDPI----RP-------GHDLFEGPFFELVAKALRPGGAMCIQAESLWF--QQFSVQHLIDDCHRI 203 (299)
Q Consensus 151 ~~~~----~~-------~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~--~~~~~~~~~~~l~~~ 203 (299)
+-.. +. ...|+ .++++ +.+.++|.=+++=|...... ....+..+++.+++.
T Consensus 71 PCq~fS~ag~~~~~~d~r~~L~-~~~~~-~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~ 134 (275)
T cd00315 71 PCQPFSIAGKRKGFEDTRGTLF-FEIIR-ILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEEL 134 (275)
T ss_pred CChhhhHHhhcCCCCCchHHHH-HHHHH-HHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhC
Confidence 5421 10 01121 34444 34456887555545432221 134566777777654
No 285
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.63 E-value=0.075 Score=46.98 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=67.7
Q ss_pred hhhHHHHHHhhcccCCCCCCeEEEEeccccHHHH--HHHhcCCccEEEEE--ECCHHHHHHHHhhchhhhcCCCCCCEEE
Q 037807 51 ECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILR--EISRHASVEQIHIC--EIDTMLINVYKEYFPEIAIGYEDSRVIL 126 (299)
Q Consensus 51 e~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~--~l~~~~~~~~v~~V--Eid~~vi~~a~~~~~~~~~~~~~~rv~v 126 (299)
+.+|.+-+-++|.....+.++||+||||.-+.-+ .+++.. .+|++| ++++++.++++ ..++++
T Consensus 7 ~~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~g--A~VtVVap~i~~el~~l~~-----------~~~i~~ 73 (223)
T PRK05562 7 EDIYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKKG--CYVYILSKKFSKEFLDLKK-----------YGNLKL 73 (223)
T ss_pred hHHhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCCCHHHHHHHh-----------CCCEEE
Confidence 3456666667777666678899999999766533 234443 567766 88888776543 246777
Q ss_pred EEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecC
Q 037807 127 HVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 127 ~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
+..+...- . -..+++||.-..+ .+.-+.+.+..+..|+++..+.
T Consensus 74 ~~r~~~~~---d-l~g~~LViaATdD----------~~vN~~I~~~a~~~~~lvn~vd 117 (223)
T PRK05562 74 IKGNYDKE---F-IKDKHLIVIATDD----------EKLNNKIRKHCDRLYKLYIDCS 117 (223)
T ss_pred EeCCCChH---H-hCCCcEEEECCCC----------HHHHHHHHHHHHHcCCeEEEcC
Confidence 76554221 1 1357888876544 4555666666666677776543
No 286
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.54 E-value=0.11 Score=51.44 Aligned_cols=121 Identities=21% Similarity=0.168 Sum_probs=76.9
Q ss_pred HHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCC----ccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccH
Q 037807 56 EMITHLPLCSIPNPKKVLLIGGGDGGILREISRHAS----VEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDG 131 (299)
Q Consensus 56 e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~----~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~ 131 (299)
+.|+++. .+....+|++-.||+|++.....++-. ...+.+.|+++....+|+.++-..+. +. .+.+..+|-
T Consensus 176 ~liv~~l--~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi--~~-~~~i~~~dt 250 (489)
T COG0286 176 ELIVELL--DPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI--EG-DANIRHGDT 250 (489)
T ss_pred HHHHHHc--CCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC--Cc-ccccccccc
Confidence 4555432 223446899999999999887765421 25689999999999999998754421 11 345555554
Q ss_pred HHHHHh---cCCCCccEEEEcCCCC-CC-------------------CCCCCCc-HHHHHHHHHhcCCCcEEEE
Q 037807 132 SEYLKT---VQSGTFDAIIIDAFDP-IR-------------------PGHDLFE-GPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 132 ~~~l~~---~~~~~fDvIi~D~~~~-~~-------------------~~~~l~t-~ef~~~~~~~LkpgGvlv~ 181 (299)
..-... ...++||.|+.+++.. .+ ++..--. ..|++.+...|+|||...+
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 332211 1146799999977653 10 0111111 5789999999999885443
No 287
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.51 E-value=0.11 Score=49.12 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=61.8
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
...+||++|+|. |.++..+++..+..+|++++.+++-.+.+++. .. +.-+.....|..+.+.+...+.+|+|
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga------~~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GA------TATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CC------ceEeCCCchhHHHHHHHHhCCCCCEE
Confidence 457899988653 33445566766666799999999999988764 21 11111112243444443323468988
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+--... .+.++...+.|+++|.++.-.
T Consensus 264 id~~G~----------~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 264 FEMAGS----------VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EECCCC----------hHHHHHHHHHHhcCCEEEEEc
Confidence 833211 345777888999999988643
No 288
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.41 E-value=0.099 Score=46.54 Aligned_cols=120 Identities=20% Similarity=0.234 Sum_probs=78.4
Q ss_pred CCCCeEEEEeccccHHHHHHHhc-CCccEEEEEECCHH----HHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHh-cCC
Q 037807 67 PNPKKVLLIGGGDGGILREISRH-ASVEQIHICEIDTM----LINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKT-VQS 140 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~----vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~ 140 (299)
+...+||-||++.|.+..++... .+..-|.+||.++. .+.+|++ .+++--++.|++.--+- +--
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk----------RtNiiPIiEDArhP~KYRmlV 224 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK----------RTNIIPIIEDARHPAKYRMLV 224 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc----------cCCceeeeccCCCchheeeee
Confidence 45689999999999999998863 23456889998764 4555554 46777788898642210 012
Q ss_pred CCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcc-----cchHHHHHHHHHHhh
Q 037807 141 GTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLW-----FQQFSVQHLIDDCHR 202 (299)
Q Consensus 141 ~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~-----~~~~~~~~~~~~l~~ 202 (299)
.-.|+|+.|...|... .-.--+...-||+||-|++...... .....|..-.+.|++
T Consensus 225 gmVDvIFaDvaqpdq~------RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqe 285 (317)
T KOG1596|consen 225 GMVDVIFADVAQPDQA------RIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQE 285 (317)
T ss_pred eeEEEEeccCCCchhh------hhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHH
Confidence 3579999998877432 2222244567999999988653222 233466666666653
No 289
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.39 E-value=0.025 Score=53.65 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=71.9
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+..+++++|||-|...+++.... ...+++++.++.-+..+........ . +.+-.++..|..+-.. ++..||.+-
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~~--l-~~k~~~~~~~~~~~~f--edn~fd~v~ 183 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKAY--L-DNKCNFVVADFGKMPF--EDNTFDGVR 183 (364)
T ss_pred ccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHHH--h-hhhcceehhhhhcCCC--CccccCcEE
Confidence 34579999999999999988764 4678999998887776666533221 1 2334446666554433 368899987
Q ss_pred E-cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 148 I-DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 148 ~-D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
+ |...... . ....|+++++.++|||++++
T Consensus 184 ~ld~~~~~~-~----~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 184 FLEVVCHAP-D----LEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred EEeecccCC-c----HHHHHHHHhcccCCCceEEe
Confidence 6 4433221 1 27789999999999999997
No 290
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.15 E-value=0.063 Score=44.59 Aligned_cols=143 Identities=17% Similarity=0.180 Sum_probs=77.8
Q ss_pred eEEEEeccccHHHHHHH-hcCCccEEEEEECCHHHHHHHHhhchhhh--cCCC-CCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 71 KVLLIGGGDGGILREIS-RHASVEQIHICEIDTMLINVYKEYFPEIA--IGYE-DSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 71 ~VL~IG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~~~--~~~~-~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+|.+||+|.++++.... ... ..+|+....+++.++..++.-.... .... .+++.+ ..|..+.++ ..|+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~-----~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALE-----DADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHT-----T-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhC-----cccEE
Confidence 58899999998876643 232 3689999999988887776432110 0000 124543 567666554 35999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCCceeeeEEeecccCC-----c
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKGSASYAWTTVPTYPS-----G 221 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~-----g 221 (299)
++-.+.. .-+++++.+...|+++-.++.-.... .......+.+.+++.++ ...+....=|+|.. -
T Consensus 74 iiavPs~-------~~~~~~~~l~~~l~~~~~ii~~~KG~--~~~~~~~~~~~i~~~~~-~~~~~~lsGP~~A~Ei~~~~ 143 (157)
T PF01210_consen 74 IIAVPSQ-------AHREVLEQLAPYLKKGQIIISATKGF--EPGTLLLLSEVIEEILP-IPRIAVLSGPSFAEEIAEGK 143 (157)
T ss_dssp EE-S-GG-------GHHHHHHHHTTTSHTT-EEEETS-SE--ETTEEEEHHHHHHHHHS-SCGEEEEESS--HHHHHTT-
T ss_pred EecccHH-------HHHHHHHHHhhccCCCCEEEEecCCc--ccCCCccHHHHHHHHhh-hcceEEeeCccHHHHHHcCC
Confidence 9876543 23788999999997766666543222 11112223333344442 22233345577642 2
Q ss_pred ceeEEeccc
Q 037807 222 VIGFMLCST 230 (299)
Q Consensus 222 ~w~~~~ask 230 (299)
.-..++||+
T Consensus 144 pt~~~~as~ 152 (157)
T PF01210_consen 144 PTAVVIASK 152 (157)
T ss_dssp -EEEEEEES
T ss_pred CeEEEEEec
Confidence 355677776
No 291
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.15 E-value=0.21 Score=38.71 Aligned_cols=94 Identities=22% Similarity=0.275 Sum_probs=60.5
Q ss_pred EEEEeccccHHHHHHHhc--CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHH--HHHhcCCCCccEEE
Q 037807 72 VLLIGGGDGGILREISRH--ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSE--YLKTVQSGTFDAII 147 (299)
Q Consensus 72 VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~--~l~~~~~~~fDvIi 147 (299)
|+++|+| .+++++++. ....+|++||.|++.++.+++. .+.++.+|+.+ .+++..-++.|.|+
T Consensus 1 vvI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----------~~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----------GVEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----------TSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----------ccccccccchhhhHHhhcCccccCEEE
Confidence 5677766 566665541 1235899999999998887763 26788999854 45554457899999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
+...+... --......+.+.|+..+++...+
T Consensus 68 ~~~~~d~~-------n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 68 ILTDDDEE-------NLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp EESSSHHH-------HHHHHHHHHHHTTTSEEEEEESS
T ss_pred EccCCHHH-------HHHHHHHHHHHCCCCeEEEEECC
Confidence 87654310 11233445678888888886544
No 292
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.10 E-value=0.21 Score=46.11 Aligned_cols=99 Identities=20% Similarity=0.250 Sum_probs=68.5
Q ss_pred CCCeEEEEecccc-HHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGDG-GILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
.+.+|.+||+|.- ..+..++-- -...|+.+|+|.+-++.....|. .|++.+......+-+.. .++|+|
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f~--------~rv~~~~st~~~iee~v--~~aDlv 235 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLFG--------GRVHTLYSTPSNIEEAV--KKADLV 235 (371)
T ss_pred CCccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhhC--------ceeEEEEcCHHHHHHHh--hhccEE
Confidence 4678999998853 333333332 24689999999988887766653 57888888877765543 679999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
|.-.--|...++.|.+ +++.+.||||++++=
T Consensus 236 IgaVLIpgakaPkLvt----~e~vk~MkpGsVivD 266 (371)
T COG0686 236 IGAVLIPGAKAPKLVT----REMVKQMKPGSVIVD 266 (371)
T ss_pred EEEEEecCCCCceehh----HHHHHhcCCCcEEEE
Confidence 9765545444555544 456778999998873
No 293
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.08 E-value=0.31 Score=44.04 Aligned_cols=97 Identities=12% Similarity=0.072 Sum_probs=58.9
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCccE
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~fDv 145 (299)
+..+||++|+|. |.++..+++..+..+|++++.+++-.+.+++.-... .++ . .+..+.+.+. ....+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~--~i~-~------~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA--LAE-P------EVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE--ecC-c------hhhHHHHHHHhCCCCCCE
Confidence 457899998753 223455667666666899999999888888742100 000 0 1111222221 2346999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+--... ...++.+.+.|+++|.++.-.
T Consensus 191 vid~~G~----------~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 ALEFSGA----------TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEECCCC----------hHHHHHHHHHhcCCCEEEEec
Confidence 8732211 445778889999999998643
No 294
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.07 E-value=0.061 Score=42.50 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=62.2
Q ss_pred cccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCC-CCccEEEEcCCCCCCC
Q 037807 78 GDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQS-GTFDAIIIDAFDPIRP 156 (299)
Q Consensus 78 G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~-~~fDvIi~D~~~~~~~ 156 (299)
|-|..+..++++.+ .+|++++.++.-.+.+++.-... -+.....|..+.+++... +.+|+||--...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~-------~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADH-------VIDYSDDDFVEQIRELTGGRGVDVVIDCVGS---- 68 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESE-------EEETTTSSHHHHHHHHTTTSSEEEEEESSSS----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccc-------cccccccccccccccccccccceEEEEecCc----
Confidence 45788889999877 89999999999999999853211 111111235556655423 479999854321
Q ss_pred CCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 157 GHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 157 ~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
.+.++...+.|+++|.+++-.
T Consensus 69 ------~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 69 ------GDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp ------HHHHHHHHHHEEEEEEEEEES
T ss_pred ------HHHHHHHHHHhccCCEEEEEE
Confidence 567899999999999999854
No 295
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=94.95 E-value=0.2 Score=46.42 Aligned_cols=96 Identities=11% Similarity=0.116 Sum_probs=62.1
Q ss_pred CeEEEEec--cccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 70 KKVLLIGG--GDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 70 ~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
.+||+.|+ |-|..+..++++.+..+|++++-+++-.+.+++.+.. +.-+.....|..+.+.+...+.+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa------~~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF------DAAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC------cEEEECCCCCHHHHHHHHCCCCceEEE
Confidence 79999985 5666777788876655799999998888877764431 111111123444445443245699988
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
|.... . .+..+.+.|+++|.++.-
T Consensus 230 -d~~g~---------~-~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 230 -DNVGG---------E-ISDTVISQMNENSHIILC 253 (345)
T ss_pred -ECCCc---------H-HHHHHHHHhccCCEEEEE
Confidence 33221 2 247788899999998863
No 296
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.03 Score=50.22 Aligned_cols=113 Identities=17% Similarity=0.147 Sum_probs=81.7
Q ss_pred CCCeEEEEeccccHHHHHHHhcC------------CccEEEEEECCHHHHHHHHhh--chh-----------hh------
Q 037807 68 NPKKVLLIGGGDGGILREISRHA------------SVEQIHICEIDTMLINVYKEY--FPE-----------IA------ 116 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~------------~~~~v~~VEid~~vi~~a~~~--~~~-----------~~------ 116 (299)
..-.|+++|.|+|...+.+.+.. ....++.+|.+|.....++.. .++ ..
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~ 137 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC 137 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence 34578999999999887765421 224577888887644433311 111 00
Q ss_pred --cCC-CCCCEEEEEccHHHHHHhcCCC---CccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 117 --IGY-EDSRVILHVCDGSEYLKTVQSG---TFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 117 --~~~-~~~rv~v~~~D~~~~l~~~~~~---~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
..+ ..-.+.++++|+.+.+... +. ++|+...|.+.|...+ .+|+.+++..++++.++||.+++-
T Consensus 138 ~r~~~~g~~~l~l~~gd~~~~~p~~-~~~~~~~dAwflDgFsP~kNP-~mW~~e~l~~~a~~~~~~~~l~t~ 207 (252)
T COG4121 138 AAAVRHGLLLLGLVIGDAGDGIPPV-PRRRPGTDAWFLDGFRPVKNP-EMWEDELLNLMARIPYRDPTLATF 207 (252)
T ss_pred HHhhhcchheeeeeeeehhhcCCcc-cccccCccEEecCCccccCCh-hhccHHHHHHHHhhcCCCCceech
Confidence 012 2446789999999988765 44 7999999999998766 789999999999999999999974
No 297
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.90 E-value=0.23 Score=49.23 Aligned_cols=106 Identities=15% Similarity=0.218 Sum_probs=61.6
Q ss_pred CCCeEEEEeccccHH-HHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCC--------CCEEEEEccHHH----H
Q 037807 68 NPKKVLLIGGGDGGI-LREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYED--------SRVILHVCDGSE----Y 134 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~--------~rv~v~~~D~~~----~ 134 (299)
++.+||++|+|.=+. +..+++..+ ..|+++|.+++..+.+++. +......+. .-.+..-.|..+ .
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG-A~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 468999999987543 444555544 3599999999999988873 211000000 001111122211 1
Q ss_pred HHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEE
Q 037807 135 LKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMC 180 (299)
Q Consensus 135 l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv 180 (299)
+.+. -+.+|+||....-|..+++.|.+++ +.+.+|||++++
T Consensus 241 ~~e~-~~~~DIVI~TalipG~~aP~Lit~e----mv~~MKpGsvIV 281 (511)
T TIGR00561 241 FAAQ-AKEVDIIITTALIPGKPAPKLITEE----MVDSMKAGSVIV 281 (511)
T ss_pred HHHH-hCCCCEEEECcccCCCCCCeeehHH----HHhhCCCCCEEE
Confidence 1211 3569999876655555555666655 466788888876
No 298
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.78 E-value=0.28 Score=45.41 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=58.9
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHh-cCCCCccE
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKT-VQSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~~fDv 145 (299)
...+||++|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+.....+ .+-+.+ .....+|+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~-ga------~~~i~~~~~~-~~~~~~~~~~~~~d~ 234 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL-GA------DFVINSGQDD-VQEIRELTSGAGADV 234 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC------CEEEcCCcch-HHHHHHHhCCCCCCE
Confidence 468999997643 22334566766665699999999988888663 21 1111111122 222222 22347999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+--... ...+....+.|+++|.+++-.
T Consensus 235 vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 235 AIECSGN----------TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred EEECCCC----------HHHHHHHHHHhhcCCEEEEEc
Confidence 8843221 445677788999999998643
No 299
>PHA01634 hypothetical protein
Probab=94.78 E-value=0.067 Score=43.02 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=53.8
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
..++|+|||++-|..+..++-. +.+.|+++|.++...+..+++...+.. -|..+-. + +|-.. -+.||+-+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI--~DK~v~~--~---eW~~~--Y~~~Di~~ 97 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNI--CDKAVMK--G---EWNGE--YEDVDIFV 97 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhhee--eeceeec--c---ccccc--CCCcceEE
Confidence 5789999999999999998866 578999999999999999987665410 0111111 1 22222 36799999
Q ss_pred EcCCC
Q 037807 148 IDAFD 152 (299)
Q Consensus 148 ~D~~~ 152 (299)
+|.-.
T Consensus 98 iDCeG 102 (156)
T PHA01634 98 MDCEG 102 (156)
T ss_pred EEccc
Confidence 98654
No 300
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.76 E-value=0.11 Score=43.56 Aligned_cols=102 Identities=19% Similarity=0.250 Sum_probs=59.1
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCE-EEEEccHHHHHHhcCCCCccEEE
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRV-ILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv-~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
.++++++|..-=-.-...+++ +..+|..||-++--++ .. + ..|+ .+...|..+-.++. .++||.+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~-GA~~iltveyn~L~i~--~~-~--------~dr~ssi~p~df~~~~~~y-~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH-GAAKILTVEYNKLEIQ--EE-F--------RDRLSSILPVDFAKNWQKY-AGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHc-CCceEEEEeecccccC--cc-c--------ccccccccHHHHHHHHHHh-hccchhhh
Confidence 468999998855554445566 5788999998763221 11 0 1122 23334443333334 57899987
Q ss_pred EcC-CCCCC------CCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 148 IDA-FDPIR------PGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 148 ~D~-~~~~~------~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+-. .++.+ |-...-...-+..+++.||+||.|.+..
T Consensus 69 s~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred eechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 622 11111 0011123667889999999999988754
No 301
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.76 E-value=0.089 Score=48.11 Aligned_cols=103 Identities=14% Similarity=0.184 Sum_probs=62.3
Q ss_pred CeEEEEeccc--cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhh-----c-CCCC-------CCEEEEEccHHHH
Q 037807 70 KKVLLIGGGD--GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIA-----I-GYED-------SRVILHVCDGSEY 134 (299)
Q Consensus 70 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-----~-~~~~-------~rv~v~~~D~~~~ 134 (299)
++|.+||+|. +.++..+++.. .+|+++|.|++.++.++++..... . .... .+++. ..|..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG--FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence 5799999983 34455555542 479999999999998876532210 0 0000 12332 2333222
Q ss_pred HHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 135 LKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 135 l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
+ +..|+||.-.++... ....+|+.+.+.++++.++++++.+
T Consensus 79 ~-----~~aD~Vi~avpe~~~-----~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 V-----ADADLVIEAVPEKLE-----LKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred h-----cCCCEEEEeccCCHH-----HHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 2 346999987665411 1256788888899998888776533
No 302
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.69 E-value=0.52 Score=40.39 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=69.5
Q ss_pred eEEEEeccccHHHHH--HHhcCCccEEEEEECCHHHHHHHHhhchhhh-c--------CCCCCCEEEEEccHHHHHHhcC
Q 037807 71 KVLLIGGGDGGILRE--ISRHASVEQIHICEIDTMLINVYKEYFPEIA-I--------GYEDSRVILHVCDGSEYLKTVQ 139 (299)
Q Consensus 71 ~VL~IG~G~G~~~~~--l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-~--------~~~~~rv~v~~~D~~~~l~~~~ 139 (299)
+|-++|.|==++... +++. + -+|+++|+|++.++..++-..... . .....|+++. .|..+.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~-G-~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~--- 75 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK-G-HQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIK--- 75 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT-T-SEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHH---
T ss_pred EEEEECCCcchHHHHHHHHhC-C-CEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhh---
Confidence 688898886444333 3444 2 589999999999998876321110 0 0012334332 45444443
Q ss_pred CCCccEEEEcCCCCCCCC---CCCCcHHHHHHHHHhcCCCcEEEEecCCcccchH-HHHHHHHHHhhhcCCceeeeEEee
Q 037807 140 SGTFDAIIIDAFDPIRPG---HDLFEGPFFELVAKALRPGGAMCIQAESLWFQQF-SVQHLIDDCHRIFKGSASYAWTTV 215 (299)
Q Consensus 140 ~~~fDvIi~D~~~~~~~~---~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~-~~~~~~~~l~~~F~~~v~~~~~~v 215 (299)
..|++++..+.|.... ..-+-....+.+.+.|+++-++++.+..+-...+ .++.+++..... ...++.++.
T Consensus 76 --~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~---~~~f~la~~ 150 (185)
T PF03721_consen 76 --DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGK---KEDFHLAYS 150 (185)
T ss_dssp --H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCT---TTCEEEEE-
T ss_pred --ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhccc---ccCCeEEEC
Confidence 3699998766554322 1112356678888999998888887765544333 444555444321 133455677
Q ss_pred ccc
Q 037807 216 PTY 218 (299)
Q Consensus 216 P~~ 218 (299)
|.|
T Consensus 151 PEr 153 (185)
T PF03721_consen 151 PER 153 (185)
T ss_dssp ---
T ss_pred CCc
Confidence 877
No 303
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.67 E-value=0.39 Score=42.18 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=62.2
Q ss_pred CCCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.+..+||+.|+|+ |..+..+++..+ .+|++++.+++..+.+++.-. +.-+.....+...-+.....+.+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGA-------DHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCC-------ceeccCCcCCHHHHHHHhcCCCCCE
Confidence 4568999999886 556666677655 679999999988887765321 0111111112222121122467999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+..... ......+.+.|+++|.++...
T Consensus 205 vi~~~~~----------~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGG----------PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCC----------HHHHHHHHHhcccCCEEEEEc
Confidence 9854332 245778889999999998754
No 304
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.036 Score=45.70 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=51.9
Q ss_pred HHHHHhhcccCCCCC-CeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHH
Q 037807 55 QEMITHLPLCSIPNP-KKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSE 133 (299)
Q Consensus 55 ~e~l~~~~l~~~~~~-~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~ 133 (299)
.|.+.++..+...++ .+.+|||.|+|.+....+++. ....++||++|-.+..+|-+.-..+. ..+.++.--|..+
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~---~k~trf~RkdlwK 133 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGC---AKSTRFRRKDLWK 133 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhc---ccchhhhhhhhhh
Confidence 556666533333444 789999999999999998874 56779999999999998865322211 2345555555444
Q ss_pred H
Q 037807 134 Y 134 (299)
Q Consensus 134 ~ 134 (299)
+
T Consensus 134 ~ 134 (199)
T KOG4058|consen 134 V 134 (199)
T ss_pred c
Confidence 3
No 305
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=94.49 E-value=0.37 Score=44.49 Aligned_cols=98 Identities=21% Similarity=0.192 Sum_probs=59.7
Q ss_pred CCCeEEEEecc-ccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCccE
Q 037807 68 NPKKVLLIGGG-DGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~fDv 145 (299)
+..+||+.|+| .|..+.++++..+...|.+++.++...+.+++.- . +.-+.....+..+.+.+. ..+.+|+
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~------~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-A------TDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-C------cEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 45789986654 2445566677655457888888888887777531 0 111222223343444432 2357998
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
|+- .... .+.++.+.+.|+++|.++.-
T Consensus 240 vld-~~g~---------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 240 VIE-AVGF---------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEE-ccCC---------HHHHHHHHHHhhcCCEEEEE
Confidence 883 2211 35688888999999998853
No 306
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=94.45 E-value=0.58 Score=40.97 Aligned_cols=110 Identities=21% Similarity=0.241 Sum_probs=69.8
Q ss_pred HHHHHhhcccCCCCCCeEEEEeccccH----HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEcc
Q 037807 55 QEMITHLPLCSIPNPKKVLLIGGGDGG----ILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCD 130 (299)
Q Consensus 55 ~e~l~~~~l~~~~~~~~VL~IG~G~G~----~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D 130 (299)
.|.+.-++ .-.+.+-++++.++.|. ++..++.+....++++|-.|++-....++.+...+. .+.++++++|
T Consensus 30 aEfISAlA--AG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~---~~~vEfvvg~ 104 (218)
T PF07279_consen 30 AEFISALA--AGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL---SDVVEFVVGE 104 (218)
T ss_pred HHHHHHHh--ccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc---cccceEEecC
Confidence 34444332 33467788888766442 344444444567899999999988888887765421 2457988888
Q ss_pred H-HHHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHh--cCCCcEEEE
Q 037807 131 G-SEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKA--LRPGGAMCI 181 (299)
Q Consensus 131 ~-~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~--LkpgGvlv~ 181 (299)
. .+.+... ...|.+++|.-. ++|.+.+.+. ++|.|.+++
T Consensus 105 ~~e~~~~~~--~~iDF~vVDc~~----------~d~~~~vl~~~~~~~~GaVVV 146 (218)
T PF07279_consen 105 APEEVMPGL--KGIDFVVVDCKR----------EDFAARVLRAAKLSPRGAVVV 146 (218)
T ss_pred CHHHHHhhc--cCCCEEEEeCCc----------hhHHHHHHHHhccCCCceEEE
Confidence 5 4566654 579999999763 3444333333 556676554
No 307
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.42 E-value=0.33 Score=45.37 Aligned_cols=94 Identities=22% Similarity=0.286 Sum_probs=57.5
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEEC---CHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCc
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEI---DTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTF 143 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEi---d~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~f 143 (299)
...+||++|+|. |.++..+++..+. +|++++. +++-.+.+++. ... .+.....|..+ .. . ...+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~-Ga~-------~v~~~~~~~~~-~~-~-~~~~ 239 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEEL-GAT-------YVNSSKTPVAE-VK-L-VGEF 239 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHc-CCE-------EecCCccchhh-hh-h-cCCC
Confidence 467899998754 3455567776665 6888886 67778877763 210 01111112222 22 1 3569
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+||--... ...+....+.|+++|.+++-.
T Consensus 240 d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 240 DLIIEATGV----------PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CEEEECcCC----------HHHHHHHHHHccCCcEEEEEe
Confidence 988843221 346788889999999988643
No 308
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.41 E-value=0.36 Score=44.19 Aligned_cols=99 Identities=23% Similarity=0.262 Sum_probs=61.6
Q ss_pred CCCCeEEEEecc-ccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGG-DGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
....+||+.|+| .|..+.++++..+ .+|++++.+++..+.+++. .. +.-+.....+....+.....+.+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL-GA------DEVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh-CC------CEEEcCCCcCHHHHHHHhcCCCceE
Confidence 346789998765 3666777777655 4599999999988888653 21 1111111122323232223567998
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+... .. ...++.+.+.|+++|.++...
T Consensus 236 vid~~-g~---------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 236 IFDFV-GT---------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEECC-CC---------HHHHHHHHHHhhcCCEEEEEC
Confidence 87322 11 456788899999999998743
No 309
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=94.40 E-value=0.15 Score=51.77 Aligned_cols=159 Identities=15% Similarity=0.154 Sum_probs=84.6
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEE---EEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccH-------------
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIH---ICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDG------------- 131 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~---~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~------------- 131 (299)
.+...|..|-|+|+++..+++..+..+++ ..|++..++.-+.-.-|..-....+.+-+.+..|-
T Consensus 322 ~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~T 401 (675)
T PF14314_consen 322 KYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPET 401 (675)
T ss_pred CcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCccH
Confidence 46789999999999999999976555554 45665555443332222110111122333333221
Q ss_pred HHHHHh---cCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecC-CcccchHHHHHHHHHHhhhcCCc
Q 037807 132 SEYLKT---VQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE-SLWFQQFSVQHLIDDCHRIFKGS 207 (299)
Q Consensus 132 ~~~l~~---~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~-s~~~~~~~~~~~~~~l~~~F~~~ 207 (299)
.+|... ..+-++|+|++|.--.............-+.+.+.|.++|.++..+. +.... .-..++..+...| ..
T Consensus 402 W~YF~~l~~~~~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~--~~~~il~~lg~~F-~~ 478 (675)
T PF14314_consen 402 WKYFVSLKKQHNLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLS--PDYNILDLLGRYF-KS 478 (675)
T ss_pred HHHHHHHHhhcCCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhc--chhhHHHHHHhhc-Cc
Confidence 223222 22568999999975322110000112223344578899999998652 21111 1236888889999 45
Q ss_pred eeeeEEeecccCCcceeEEeccc
Q 037807 208 ASYAWTTVPTYPSGVIGFMLCST 230 (299)
Q Consensus 208 v~~~~~~vP~~~~g~w~~~~ask 230 (299)
|....+..-+-....+ ++++++
T Consensus 479 V~l~qT~~SSs~TSEV-Ylv~~~ 500 (675)
T PF14314_consen 479 VELVQTQFSSSFTSEV-YLVFQK 500 (675)
T ss_pred eEEEECCCCCCCceEE-EEEEec
Confidence 6544332222222333 677766
No 310
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.39 E-value=0.38 Score=42.62 Aligned_cols=140 Identities=19% Similarity=0.284 Sum_probs=84.8
Q ss_pred CCCeEEEEeccccHHHHHHHhc-----C-Ccc---EEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHH------
Q 037807 68 NPKKVLLIGGGDGGILREISRH-----A-SVE---QIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGS------ 132 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~-----~-~~~---~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~------ 132 (299)
.-+||.||....|.-...+.+. + ..+ .|++||+.+.+ | -+.|.-+++|..
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------P-------I~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------P-------IEGVIQLQGDITSASTAE 105 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------c-------cCceEEeecccCCHhHHH
Confidence 3578999999999877666542 1 112 39999986632 1 346666777752
Q ss_pred HHHHhcCCCCccEEEEcCCCC-CCCCC--CCCc----HHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcC
Q 037807 133 EYLKTVQSGTFDAIIIDAFDP-IRPGH--DLFE----GPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFK 205 (299)
Q Consensus 133 ~~l~~~~~~~fDvIi~D~~~~-~~~~~--~l~t----~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~ 205 (299)
..++-...++.|+|++|.... .|... .... ...+.....+|+|||.||. .+++.+...-++..|+..|.
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa----KifRg~~tslLysql~~ff~ 181 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA----KIFRGRDTSLLYSQLRKFFK 181 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh----hhhccCchHHHHHHHHHHhh
Confidence 233333457999999986432 22211 0001 1223444678999999996 44454455667788888884
Q ss_pred CceeeeEEeecc--cCCcceeEEeccc
Q 037807 206 GSASYAWTTVPT--YPSGVIGFMLCST 230 (299)
Q Consensus 206 ~~v~~~~~~vP~--~~~g~w~~~~ask 230 (299)
. +.. .-|. -++..-.|++|..
T Consensus 182 k-v~~---~KPrsSR~sSiEaFvvC~~ 204 (294)
T KOG1099|consen 182 K-VTC---AKPRSSRNSSIEAFVVCLG 204 (294)
T ss_pred c-eee---ecCCccccccceeeeeecc
Confidence 3 322 2222 2344567889876
No 311
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.29 E-value=0.24 Score=45.55 Aligned_cols=86 Identities=19% Similarity=0.291 Sum_probs=55.8
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
...+||++|+|. |.++..+++..+...|.++|.+++-++.++++.. + ++ .+ .. ...+|+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~-----i-~~---------~~---~~-~~g~Dvv 204 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV-----L-DP---------EK---DP-RRDYRAI 204 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc-----c-Ch---------hh---cc-CCCCCEE
Confidence 456899998653 4455667777677778888998887776654310 0 11 00 01 3468988
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+ |.... ...++.+.+.|+++|.+++-
T Consensus 205 i-d~~G~---------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 205 Y-DASGD---------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred E-ECCCC---------HHHHHHHHHhhhcCcEEEEE
Confidence 7 33221 34678888999999999864
No 312
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=94.27 E-value=0.44 Score=42.75 Aligned_cols=117 Identities=22% Similarity=0.293 Sum_probs=67.3
Q ss_pred EEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc--CCCCccEEEEcC
Q 037807 73 LLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV--QSGTFDAIIIDA 150 (299)
Q Consensus 73 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~~fDvIi~D~ 150 (299)
|..=.|+=.+++.+++.. .+.+.+|+-|.-.+..++++.. +++++++..|+.+-+... +..+==+|++|+
T Consensus 62 l~~YPGSP~ia~~llR~q--Drl~l~ELHp~d~~~L~~~~~~------~~~v~v~~~DG~~~l~allPP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQ--DRLVLFELHPQDFEALKKNFRR------DRRVRVHHRDGYEGLKALLPPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-TT--SEEEEE--SHHHHHHHTTS--T------TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCcc--ceEEEEecCchHHHHHHHHhcc------CCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence 556677778888888753 6899999999999999988863 679999999999988765 345567999997
Q ss_pred CCCCCCCCCCCcHHHHHHHHHhcC--CCcEEEEecCCcccchHHHHHHHHHHhhh
Q 037807 151 FDPIRPGHDLFEGPFFELVAKALR--PGGAMCIQAESLWFQQFSVQHLIDDCHRI 203 (299)
Q Consensus 151 ~~~~~~~~~l~t~ef~~~~~~~Lk--pgGvlv~~~~s~~~~~~~~~~~~~~l~~~ 203 (299)
+...... | ....+.+.+.++ +.|++++-- |.........+.+.+++.
T Consensus 134 pYE~~~d---y-~~v~~~l~~a~kR~~~G~~~iWY--Pi~~~~~~~~~~~~l~~~ 182 (245)
T PF04378_consen 134 PYEQKDD---Y-QRVVDALAKALKRWPTGVYAIWY--PIKDRERVDRFLRALKAL 182 (245)
T ss_dssp ---STTH---H-HHHHHHHHHHHHH-TTSEEEEEE--EESSHHHHHHHHHHHHHH
T ss_pred CCCCchH---H-HHHHHHHHHHHHhcCCcEEEEEe--ecccHHHHHHHHHHHHhc
Confidence 6432210 0 112222233332 578888643 445556677777777755
No 313
>PLN02740 Alcohol dehydrogenase-like
Probab=94.17 E-value=0.47 Score=44.96 Aligned_cols=99 Identities=16% Similarity=0.075 Sum_probs=59.8
Q ss_pred CCCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEE--ccHHHHHHhcCCCCc
Q 037807 67 PNPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHV--CDGSEYLKTVQSGTF 143 (299)
Q Consensus 67 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~--~D~~~~l~~~~~~~f 143 (299)
....+||++|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+.... .|..+.+.+...+.+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GI------TDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CC------cEEEecccccchHHHHHHHHhCCCC
Confidence 3467899998653 22344566666666799999999999998763 21 11111111 123344443323369
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCC-cEEEEe
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPG-GAMCIQ 182 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~Lkpg-Gvlv~~ 182 (299)
|+|+--... .+.+....+.++++ |.+++-
T Consensus 270 dvvid~~G~----------~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 270 DYSFECAGN----------VEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred CEEEECCCC----------hHHHHHHHHhhhcCCCEEEEE
Confidence 988742221 45677778889896 987763
No 314
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=94.09 E-value=0.52 Score=43.12 Aligned_cols=97 Identities=19% Similarity=0.239 Sum_probs=62.3
Q ss_pred CCCCeEEEEe--ccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCcc
Q 037807 67 PNPKKVLLIG--GGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 67 ~~~~~VL~IG--~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fD 144 (299)
.+..+||+.| +|-|..+..+++..+. +|+++.-+++-.+.+++ +.. +.-+.....|..+-+.+...+.+|
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~-~Ga------~~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE-LGF------DAVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH-cCC------CEEEeCCCccHHHHHHHHCCCCcE
Confidence 3467899998 4556677778887665 68889988888888877 321 111111123444444433245699
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+|+ |... .+.++...+.|+++|.++..
T Consensus 214 ~vl-d~~g----------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 214 CYF-DNVG----------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEE-ECCC----------HHHHHHHHHhhccCCEEEEE
Confidence 888 3222 23567888999999998864
No 315
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=94.09 E-value=0.39 Score=44.88 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=64.6
Q ss_pred CCCCeEEEEec--cccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcC-CCCc
Q 037807 67 PNPKKVLLIGG--GDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQ-SGTF 143 (299)
Q Consensus 67 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~-~~~f 143 (299)
+...+||+.|+ |-|.++.+++|..+. .++++--+++-.+.+++.-. +.-+.+...|..+-+++.. .+.+
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGA-------d~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGA-------DHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCC-------CEEEcCCcccHHHHHHHHcCCCCc
Confidence 34689999994 556678888887665 45555555555557766543 2334455566666665442 3469
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+|+- +.+ .+.+....+.|+++|.+++-.
T Consensus 213 Dvv~D----~vG-------~~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 213 DVVLD----TVG-------GDTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred eEEEE----CCC-------HHHHHHHHHHhccCCEEEEEe
Confidence 99983 222 556777899999999998744
No 316
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.06 E-value=0.091 Score=46.03 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=66.3
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHH-HHhcCCCCccEEE
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEY-LKTVQSGTFDAII 147 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~-l~~~~~~~fDvIi 147 (299)
+.++||||+=+......- . +.-.|+.||+++. ++ .|..+|..+. +.....++||+|.
T Consensus 52 ~lrlLEVGals~~N~~s~--~-~~fdvt~IDLns~-----------------~~--~I~qqDFm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST--S-GWFDVTRIDLNSQ-----------------HP--GILQQDFMERPLPKNESEKFDVIS 109 (219)
T ss_pred cceEEeecccCCCCcccc--c-CceeeEEeecCCC-----------------CC--CceeeccccCCCCCCcccceeEEE
Confidence 479999999865544432 2 2345999998762 12 3455665553 2222367999999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcE-----EEEec------CCcccchHHHHHHHHHH
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGA-----MCIQA------ESLWFQQFSVQHLIDDC 200 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGv-----lv~~~------~s~~~~~~~~~~~~~~l 200 (299)
+.+--..-|.+ .-.-+-++.+.+.|+|+|. |.+-. .|.+...+.+..++..|
T Consensus 110 ~SLVLNfVP~p-~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~L 172 (219)
T PF11968_consen 110 LSLVLNFVPDP-KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESL 172 (219)
T ss_pred EEEEEeeCCCH-HHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhC
Confidence 86532211111 0125678899999999999 55432 24455556666777666
No 317
>PLN02827 Alcohol dehydrogenase-like
Probab=93.98 E-value=0.48 Score=44.98 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=60.0
Q ss_pred CCCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEE--ccHHHHHHhcCCCCc
Q 037807 67 PNPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHV--CDGSEYLKTVQSGTF 143 (299)
Q Consensus 67 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~--~D~~~~l~~~~~~~f 143 (299)
....+||+.|+|. |.++.++++..+...|++++.+++-.+.+++. .. +.-+.... .+..+.+++...+.+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GV------TDFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC------cEEEcccccchHHHHHHHHHhCCCC
Confidence 3467999998643 22344566766666789999999988888663 21 10111111 234444443323369
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCC-cEEEEe
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPG-GAMCIQ 182 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~Lkpg-Gvlv~~ 182 (299)
|+|+-- ... ...+....+.|+++ |.+++-
T Consensus 265 d~vid~-~G~---------~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 265 DYSFEC-VGD---------TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CEEEEC-CCC---------hHHHHHHHHhhccCCCEEEEE
Confidence 988832 221 34567788889998 999863
No 318
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.92 E-value=0.23 Score=43.10 Aligned_cols=34 Identities=32% Similarity=0.343 Sum_probs=23.9
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECC
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEID 101 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid 101 (299)
...+||++|+|+ |......+...++.+++.+|-|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 457899999984 3333333334478899999988
No 319
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.84 E-value=0.53 Score=43.94 Aligned_cols=99 Identities=17% Similarity=0.293 Sum_probs=59.7
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEE---ccHHHHHHhc-CCCC
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHV---CDGSEYLKTV-QSGT 142 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~---~D~~~~l~~~-~~~~ 142 (299)
...+||++|+|. |..+..+++..+. +|++++.+++-.+.+++. .. +.-+.... .|..+.+++. ....
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~~~~~~t~~~g 237 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF-GA------DLTLNPKDKSAREVKKLIKAFAKARG 237 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh-CC------ceEecCccccHHHHHHHHHhhcccCC
Confidence 467899999855 4455666776665 689999999998888763 21 11111111 1333333332 1234
Q ss_pred ccE---EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 143 FDA---IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 143 fDv---Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+|. +++|.... ....+.+.+.|+++|.+++-.
T Consensus 238 ~d~~~d~v~d~~g~---------~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 238 LRSTGWKIFECSGS---------KPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCcCEEEECCCC---------hHHHHHHHHHHhcCCeEEEEC
Confidence 652 34454432 456777888999999998743
No 320
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=93.75 E-value=0.056 Score=47.50 Aligned_cols=60 Identities=28% Similarity=0.382 Sum_probs=47.2
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHH
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEY 134 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~ 134 (299)
..-|.+||.|.|+++|.++.. +.++..+||+|+..+.-.+- +.+. .+.++.++++|+..|
T Consensus 51 ~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~-L~EA----a~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQM-LSEA----APGKLRIHHGDVLRF 110 (326)
T ss_pred cceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHH-Hhhc----CCcceEEecccccee
Confidence 456999999999999999987 47899999999988775543 2222 356899999998654
No 321
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.74 E-value=0.69 Score=43.00 Aligned_cols=99 Identities=23% Similarity=0.216 Sum_probs=61.5
Q ss_pred CCCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCcc
Q 037807 67 PNPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTFD 144 (299)
Q Consensus 67 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~fD 144 (299)
++..+||+.|+|. |..+.++++..+...+++++.+++-.+.+++. .. +.-+.....+..+-+.+. ....+|
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GA------TDIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------ceEecCCCCCHHHHHHHHhCCCCCc
Confidence 4568899997642 33445566766776799999999888888863 21 111111122333333322 235699
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+|+-.... ...+..+.+.|+++|.++.-
T Consensus 238 ~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 238 AVIIAGGG----------QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred EEEECCCC----------HHHHHHHHHHhhcCCEEEEe
Confidence 88843221 35678889999999998853
No 322
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=93.72 E-value=0.75 Score=42.27 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=61.2
Q ss_pred CCCCeEEEEec--cccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEE-ccHHHHHHhcCCCCc
Q 037807 67 PNPKKVLLIGG--GDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHV-CDGSEYLKTVQSGTF 143 (299)
Q Consensus 67 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~f 143 (299)
.+..+||+.|+ |-|..+..+++..+. +|+++.-+++-.+.+++ +.. +.-+.... .+..+.++....+.+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~-lGa------~~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK-LGF------DVAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH-cCC------CEEEeccccccHHHHHHHhCCCCe
Confidence 34678999984 566677778887665 68888888888888865 321 11111111 123334443323569
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
|+|+ |... .+.+....+.|+++|.++.-
T Consensus 209 dvv~-d~~G----------~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 209 DCYF-DNVG----------GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EEEE-ECCC----------HHHHHHHHHHhCcCcEEEEe
Confidence 9888 4322 22457888999999999864
No 323
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=93.69 E-value=0.67 Score=43.43 Aligned_cols=98 Identities=11% Similarity=0.137 Sum_probs=62.1
Q ss_pred CCCCeEEEEec--cccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEc-cHHHHHHhcCCCCc
Q 037807 67 PNPKKVLLIGG--GDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVC-DGSEYLKTVQSGTF 143 (299)
Q Consensus 67 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~-D~~~~l~~~~~~~f 143 (299)
.+..+||+.|+ |-|.++..+++..+. +|++++.+++-.+.+++.+.. +.-+..... |..+.+.+...+.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~lGa------~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKLGF------DEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhcCC------CEEEECCCcccHHHHHHHHCCCCc
Confidence 34678999986 456677778887664 688899998888877643331 111111111 44444443323469
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
|+|+ |... ...+..+.+.|+++|.+++-
T Consensus 230 D~v~-d~vG----------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 230 DIYF-DNVG----------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred EEEE-ECCC----------HHHHHHHHHHhccCCEEEEE
Confidence 9888 3322 23567888999999999864
No 324
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.55 E-value=0.79 Score=42.48 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=59.8
Q ss_pred CCCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEcc----HHHHHHhcCCC
Q 037807 67 PNPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCD----GSEYLKTVQSG 141 (299)
Q Consensus 67 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D----~~~~l~~~~~~ 141 (299)
.+..+||+.|+|. |..+.++++..+...|+.+.-+++-.+.+++. .. +.-+.....+ ..+.......+
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GA------THTVNVRTEDTPESAEKIAELLGGK 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC------cEEeccccccchhHHHHHHHHhCCC
Confidence 4567899977654 55566677776665588888888887777653 21 1111111112 11222222245
Q ss_pred CccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 142 TFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 142 ~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
.+|+|+-.... ........+.|+++|.++.-
T Consensus 234 ~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 234 GPDVVIECTGA----------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 69999843221 33678889999999998864
No 325
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.26 E-value=0.24 Score=45.02 Aligned_cols=102 Identities=17% Similarity=0.243 Sum_probs=62.9
Q ss_pred CeEEEEecc--ccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhh-----hcC-CCC-------CCEEEEEccHHHH
Q 037807 70 KKVLLIGGG--DGGILREISRHASVEQIHICEIDTMLINVYKEYFPEI-----AIG-YED-------SRVILHVCDGSEY 134 (299)
Q Consensus 70 ~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-----~~~-~~~-------~rv~v~~~D~~~~ 134 (299)
++|-+||+| ++.++..++++. .+|+++|++++.++.+++.+... ..+ ... .++++ ..|.. -
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~-~ 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG--YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD-D 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH-H
Confidence 479999998 455666666663 37999999999997665432211 000 000 13332 23421 1
Q ss_pred HHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 135 LKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 135 l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
+ +..|+||.-.+... ....++|+.+.+.++++.+++.++.+
T Consensus 80 ~-----~~aDlVi~av~e~~-----~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 L-----KDADLVIEAATENM-----DLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred h-----ccCCeeeecccccH-----HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 2 34799997654321 11258899999999999988776544
No 326
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=93.24 E-value=0.69 Score=41.67 Aligned_cols=151 Identities=22% Similarity=0.300 Sum_probs=71.0
Q ss_pred hhHHHHHHhhcc--cCCCCCCeEEEEeccccH--H-HHHHHh--cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCE
Q 037807 52 CAYQEMITHLPL--CSIPNPKKVLLIGGGDGG--I-LREISR--HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRV 124 (299)
Q Consensus 52 ~~Y~e~l~~~~l--~~~~~~~~VL~IG~G~G~--~-~~~l~~--~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv 124 (299)
.-|.++-..+.- +..|...|||.+|+|+-- . +..++| .|...-++-.|+.+-+ +| .-
T Consensus 43 ~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v---------------SD-a~ 106 (299)
T PF06460_consen 43 AKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV---------------SD-AD 106 (299)
T ss_dssp HHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B----------------S-SS
T ss_pred HHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc---------------cc-cC
Confidence 456666544322 234677899999998632 2 233444 2333445555554422 12 23
Q ss_pred EEEEccHHHHHHhcCCCCccEEEEcCCCCCCC-------CCCCCcHHHHHHHHHhcCCCcEEEEec-CCcccchHHHHHH
Q 037807 125 ILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRP-------GHDLFEGPFFELVAKALRPGGAMCIQA-ESLWFQQFSVQHL 196 (299)
Q Consensus 125 ~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~-------~~~l~t~ef~~~~~~~LkpgGvlv~~~-~s~~~~~~~~~~~ 196 (299)
..+.+|-..+.. +.+||+||+|..|+..- ...-+..-+..-+++.|+-||-+++.. +..| .. ++
T Consensus 107 ~~~~~Dc~t~~~---~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw-~~----~L 178 (299)
T PF06460_consen 107 QSIVGDCRTYMP---PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW-NA----QL 178 (299)
T ss_dssp EEEES-GGGEEE---SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS---H----HH
T ss_pred CceeccccccCC---CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc-cH----HH
Confidence 456688777653 68999999999975311 111122233445578999999998865 3444 22 23
Q ss_pred HHHHhhhcCCceeeeEEeecccCCcceeEEeccc
Q 037807 197 IDDCHRIFKGSASYAWTTVPTYPSGVIGFMLCST 230 (299)
Q Consensus 197 ~~~l~~~F~~~v~~~~~~vP~~~~g~w~~~~ask 230 (299)
. .+-+.| .....+.+.+-+-.+ -+|+++-.
T Consensus 179 y-el~~~F-~~wt~FcT~VNtSSS--EaFLigiN 208 (299)
T PF06460_consen 179 Y-ELMGYF-SWWTCFCTAVNTSSS--EAFLIGIN 208 (299)
T ss_dssp H-HHHTTE-EEEEEEEEGGGTTSS---EEEEEEE
T ss_pred H-HHHhhc-ccEEEEecccCcccc--ceeEEeee
Confidence 3 344566 344455555544322 35777765
No 327
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=93.24 E-value=1.1 Score=41.52 Aligned_cols=98 Identities=12% Similarity=0.128 Sum_probs=62.2
Q ss_pred CCCCeEEEEec--cccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEE-ccHHHHHHhcCCCCc
Q 037807 67 PNPKKVLLIGG--GDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHV-CDGSEYLKTVQSGTF 143 (299)
Q Consensus 67 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~f 143 (299)
....+||+.|+ |-|..+..+++..+. +|+++..+++-.+.+++.+.. +.-+.... .|..+.+.+...+.+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa------~~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGF------DDAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC------ceeEEcCCcccHHHHHHHhCCCCc
Confidence 35689999985 556677778887665 688888888888888764431 11111111 134344443323579
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
|+|+ |... ...+..+.+.|+++|.++.-
T Consensus 223 d~v~-d~~g----------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 223 DIYF-DNVG----------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EEEE-ECCC----------HHHHHHHHHHhccCcEEEEe
Confidence 9888 4322 23467888999999999864
No 328
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.23 E-value=0.5 Score=44.14 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=64.2
Q ss_pred CCeEEEEecc--ccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhh----h-cCC----CCCCEEEEEccHHHHHHh
Q 037807 69 PKKVLLIGGG--DGGILREISRHASVEQIHICEIDTMLINVYKEYFPEI----A-IGY----EDSRVILHVCDGSEYLKT 137 (299)
Q Consensus 69 ~~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~----~-~~~----~~~rv~v~~~D~~~~l~~ 137 (299)
.++|-+||+| +.+++..++... .+|++.|.+++.++.+++.+... . .+. ...++++. .|..+-+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG--~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av-- 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHG--LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV-- 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh--
Confidence 4789999998 445555566553 68999999999888766543321 0 000 01234433 2332222
Q ss_pred cCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecC
Q 037807 138 VQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 138 ~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
...|+|+-..+.... ...++|+.+-+.++|+-+|..++.
T Consensus 82 ---~~aDlViEavpE~l~-----vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 82 ---ADADFIQESAPEREA-----LKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred ---cCCCEEEECCcCCHH-----HHHHHHHHHHHhCCCCeEEEECCC
Confidence 356999976554321 136788999999999987777653
No 329
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=93.12 E-value=0.67 Score=42.72 Aligned_cols=96 Identities=22% Similarity=0.331 Sum_probs=59.3
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+..+||+.|+|. |..+.++++..+..+|++++.+++..+.+++. .. +.-+.....+...... . .+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~------~~vi~~~~~~~~~~~~-~-~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GA------DETVNLARDPLAAYAA-D-KGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC------CEEEcCCchhhhhhhc-c-CCCccEE
Confidence 567899987765 55666777766665789999998888877764 21 0000000111122221 1 3459999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+--... ...++.+.+.|+++|.++.-
T Consensus 236 ld~~g~----------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 236 FEASGA----------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence 843221 34577889999999999864
No 330
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.06 E-value=2.2 Score=42.12 Aligned_cols=139 Identities=12% Similarity=0.168 Sum_probs=75.6
Q ss_pred CeEEEEeccccHHHHH--HHhcCCccEEEEEECCHHHHHHHHhhchhhh-cCCC-------CCCEEEEEccHHHHHHhcC
Q 037807 70 KKVLLIGGGDGGILRE--ISRHASVEQIHICEIDTMLINVYKEYFPEIA-IGYE-------DSRVILHVCDGSEYLKTVQ 139 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~--l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-~~~~-------~~rv~v~~~D~~~~l~~~~ 139 (299)
.+|.+||.|-.++... ++++....+|+++|+|++.++..++-..... .+++ ..+++ ...|..+.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~-~t~~~~~~i---- 76 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF-FSTDVEKHV---- 76 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE-EEcCHHHHH----
Confidence 3689999998776555 3344223579999999999998776432110 0000 00121 122222222
Q ss_pred CCCccEEEEcCCCCCCC--------CCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCCceeee
Q 037807 140 SGTFDAIIIDAFDPIRP--------GHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKGSASYA 211 (299)
Q Consensus 140 ~~~fDvIi~D~~~~~~~--------~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~~v~~~ 211 (299)
..-|+|++..+.|... +..-+-.+..+.+.+.|++|-++++.+..+-...+.+...+. +.-++ ..++
T Consensus 77 -~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~---~~~~g-~~f~ 151 (473)
T PLN02353 77 -AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILT---HNSKG-INFQ 151 (473)
T ss_pred -hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHH---hhCCC-CCeE
Confidence 3469998876555421 111123566777888998877878776655544443333322 21111 2344
Q ss_pred EEeeccc
Q 037807 212 WTTVPTY 218 (299)
Q Consensus 212 ~~~vP~~ 218 (299)
.++-|.|
T Consensus 152 v~~~PEr 158 (473)
T PLN02353 152 ILSNPEF 158 (473)
T ss_pred EEECCCc
Confidence 4566776
No 331
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=93.06 E-value=1.4 Score=42.24 Aligned_cols=103 Identities=15% Similarity=0.182 Sum_probs=62.4
Q ss_pred CCeEEEEe--ccccHHHHHHHhcC--CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEE----ccHHHHHHhc-C
Q 037807 69 PKKVLLIG--GGDGGILREISRHA--SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHV----CDGSEYLKTV-Q 139 (299)
Q Consensus 69 ~~~VL~IG--~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~----~D~~~~l~~~-~ 139 (299)
..+||++| ++-|..+.++++.. +..+|+++|.+++-++.+++.+..... .......++. .|..+.+.+. .
T Consensus 176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~v~~~t~ 254 (410)
T cd08238 176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-SRGIELLYVNPATIDDLHATLMELTG 254 (410)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-ccCceEEEECCCccccHHHHHHHHhC
Confidence 46899998 34566666777764 235799999999999999886432100 0000111221 2444444432 2
Q ss_pred CCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 140 SGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 140 ~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
...+|+|+..... ...+....+.|+++|.+++.
T Consensus 255 g~g~D~vid~~g~----------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 255 GQGFDDVFVFVPV----------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCEEEEcCCC----------HHHHHHHHHHhccCCeEEEE
Confidence 3469998864322 34677888899988866553
No 332
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.01 E-value=0.63 Score=42.88 Aligned_cols=102 Identities=13% Similarity=0.186 Sum_probs=58.5
Q ss_pred CCeEEEEeccc--cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCC--------CCEEEEEccHHHHHHhc
Q 037807 69 PKKVLLIGGGD--GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYED--------SRVILHVCDGSEYLKTV 138 (299)
Q Consensus 69 ~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~--------~rv~v~~~D~~~~l~~~ 138 (299)
-++|.+||+|. +.++..+++. + .+|+++|.+++.++.+++.+....+.... .++++ ..|..+.+
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~-g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~--- 77 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK-G-LQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAV--- 77 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHh---
Confidence 36799999984 3344555554 2 47999999999988877643211000000 11222 23332222
Q ss_pred CCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 139 QSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 139 ~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+..|+||.-.+.... ...++++.+...++++-+++.++
T Consensus 78 --~~aDlVi~av~~~~~-----~~~~v~~~l~~~~~~~~ii~s~t 115 (311)
T PRK06130 78 --SGADLVIEAVPEKLE-----LKRDVFARLDGLCDPDTIFATNT 115 (311)
T ss_pred --ccCCEEEEeccCcHH-----HHHHHHHHHHHhCCCCcEEEECC
Confidence 346999987654310 12567777777777766665544
No 333
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=93.00 E-value=0.4 Score=46.06 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=71.0
Q ss_pred EEEEecCCceEEEEc-CeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHH
Q 037807 27 MVFQSSSYGKVFVLD-GALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLI 105 (299)
Q Consensus 27 ~v~e~~~~g~~l~ld-g~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi 105 (299)
.++|.+..|-.+-+| |.+-..++.. .-||-++. +. ..+.-|.|+-||-|-++.-+++.. .+|++-|++|+++
T Consensus 212 ~vtevre~~~~Fk~DfskVYWnsRL~-~Eherlsg--~f--k~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesi 284 (495)
T KOG2078|consen 212 LVTEVREGGERFKFDFSKVYWNSRLS-HEHERLSG--LF--KPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESI 284 (495)
T ss_pred eEEEEecCCeeEEEecceEEeeccch-hHHHHHhh--cc--CCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHH
Confidence 355555555444444 3333333332 22555554 22 456778899999999999988764 7899999999999
Q ss_pred HHHHhhchhhhcCCCCCCEEEEEccHHHHHHh
Q 037807 106 NVYKEYFPEIAIGYEDSRVILHVCDGSEYLKT 137 (299)
Q Consensus 106 ~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~ 137 (299)
++.+.+.+.+.. +..+++++..||.+|+++
T Consensus 285 k~Lk~ni~lNkv--~~~~iei~Nmda~~Flr~ 314 (495)
T KOG2078|consen 285 KWLKANIKLNKV--DPSAIEIFNMDAKDFLRQ 314 (495)
T ss_pred HHHHHhcccccc--chhheeeecccHHHHhhc
Confidence 999999876522 344599999999999974
No 334
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=92.93 E-value=0.12 Score=48.33 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=72.8
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHH-------hhchhhhcCCCCCCEEEEEccHHHHHHhcC
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYK-------EYFPEIAIGYEDSRVILHVCDGSEYLKTVQ 139 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~-------~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~ 139 (299)
.+.+=|+|=-.|||+++...++.. .-|.+-|||-.++...| .+|...+. .+.-+.+..+|.-.-.-..
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FG--a~viGtDIDyr~vragrg~~~si~aNFkQYg~--~~~fldvl~~D~sn~~~rs- 281 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFG--AYVIGTDIDYRTVRAGRGEDESIKANFKQYGS--SSQFLDVLTADFSNPPLRS- 281 (421)
T ss_pred CCCCEEecCccccCceeeehhhhc--ceeeccccchheeecccCCCcchhHhHHHhCC--cchhhheeeecccCcchhh-
Confidence 456678998889999988877663 57999999999988543 33443321 2334678888875433222
Q ss_pred CCCccEEEEcCCCCCC------------------------CCCCCCc-----HHHHHHHHHhcCCCcEEEEe
Q 037807 140 SGTFDAIIIDAFDPIR------------------------PGHDLFE-----GPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 140 ~~~fDvIi~D~~~~~~------------------------~~~~l~t-----~ef~~~~~~~LkpgGvlv~~ 182 (299)
+..||.||+|++.... |....|+ .+.+.-.+++|..||.++.-
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW 353 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence 6789999999875421 0111111 23344558899999999964
No 335
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.87 E-value=0.16 Score=43.78 Aligned_cols=52 Identities=21% Similarity=0.103 Sum_probs=37.9
Q ss_pred HHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHh
Q 037807 57 MITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKE 110 (299)
Q Consensus 57 ~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~ 110 (299)
++..+......+..-|||--+|+|+++..+.+.. .+..++|++++.+++|++
T Consensus 180 l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 180 LIERLIKASTNPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhhhccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 3333333334567789999999999999988874 579999999999999975
No 336
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=92.83 E-value=1.2 Score=41.76 Aligned_cols=98 Identities=15% Similarity=0.129 Sum_probs=59.0
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEc--cHHHHHHhcCCCCcc
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVC--DGSEYLKTVQSGTFD 144 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~--D~~~~l~~~~~~~fD 144 (299)
+..+||+.|+|. |..+..+++..+...|++++.+++-.+.+++. .. +.-+..... +..+.+.+...+.+|
T Consensus 183 ~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~~~l~~~~~~~~d 255 (365)
T cd05279 183 PGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL-GA------TECINPRDQDKPIVEVLTEMTDGGVD 255 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC------CeecccccccchHHHHHHHHhCCCCc
Confidence 467999986542 22334456666666788999888888888653 21 111111122 333444332245699
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcC-CCcEEEEe
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALR-PGGAMCIQ 182 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~Lk-pgGvlv~~ 182 (299)
+|+ |.... ...+....+.|+ ++|.++..
T Consensus 256 ~vi-d~~g~---------~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 256 YAF-EVIGS---------ADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred EEE-ECCCC---------HHHHHHHHHHhccCCCEEEEE
Confidence 998 33211 345777888999 99998864
No 337
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.83 E-value=0.43 Score=45.19 Aligned_cols=35 Identities=34% Similarity=0.321 Sum_probs=25.3
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCH
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDT 102 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 102 (299)
...+||++|||+ |+.....+...++.+++.||-|.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 357899999985 33333344455789999999885
No 338
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=92.78 E-value=0.12 Score=49.59 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=62.3
Q ss_pred eEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcC
Q 037807 71 KVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDA 150 (299)
Q Consensus 71 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~ 150 (299)
-||+||.|+|.+.....+.. ...|+++|.=..|.++|++-...+ ++ ..+++++..---+. ..-+..+-|+++-..
T Consensus 69 ~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kn--g~-SdkI~vInkrStev-~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKN--GM-SDKINVINKRSTEV-KVGGSSRADIAVRED 143 (636)
T ss_pred EEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcC--CC-ccceeeecccccee-eecCcchhhhhhHhh
Confidence 48999999999888777764 678999999999999999976544 33 34677665332211 100122356666544
Q ss_pred CCCCCCCCCCCcHHHHHHHHHhcCCCcEEE
Q 037807 151 FDPIRPGHDLFEGPFFELVAKALRPGGAMC 180 (299)
Q Consensus 151 ~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv 180 (299)
++..-..+.+ ..-|+.+.++|-.+|.=+
T Consensus 144 fdtEligeGa--lps~qhAh~~L~~~nc~~ 171 (636)
T KOG1501|consen 144 FDTELIGEGA--LPSLQHAHDMLLVDNCKT 171 (636)
T ss_pred hhhhhhcccc--chhHHHHHHHhcccCCee
Confidence 4432111110 223666766665555433
No 339
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=92.66 E-value=0.051 Score=49.04 Aligned_cols=113 Identities=18% Similarity=0.235 Sum_probs=59.6
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCC------------CC-------------C
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGY------------ED-------------S 122 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~------------~~-------------~ 122 (299)
+..++||||+|.-.. ..+...+...+|++.|..+.=.+..++++..- +++ +. .
T Consensus 56 ~g~~llDiGsGPtiy-~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~-~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY-QLLSACEWFEEIVLSDYSEQNREELEKWLRKE-GAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--G-GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT--TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHH-hhhhHHHhhcceEEeeccHhhHHHHHHHHCCC-CCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 356899999997322 22223344689999999999999888887543 111 00 0
Q ss_pred CEE-EEEccHHHHH--Hh--cCCCCccEEEEcCCCC-CCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 123 RVI-LHVCDGSEYL--KT--VQSGTFDAIIIDAFDP-IRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 123 rv~-v~~~D~~~~l--~~--~~~~~fDvIi~D~~~~-~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
.|+ ++..|..+-- .. .-+.+||+|++-..-. ......-| ...++++.+.|||||.|++..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y-~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEY-RRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHH-HHHHHHHHTTEEEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHH-HHHHHHHHHHcCCCcEEEEEE
Confidence 122 5555653311 10 0023588887632110 00000001 334667788999999998753
No 340
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=92.64 E-value=0.72 Score=39.87 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=23.7
Q ss_pred CCeEEEEeccccHHHHHHHh---cCCccEEEEEECCH
Q 037807 69 PKKVLLIGGGDGGILREISR---HASVEQIHICEIDT 102 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~ 102 (299)
..+||++|+|+ ++.++++ ..++.+++.+|-|.
T Consensus 21 ~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCc
Confidence 56899999874 4444443 55799999999874
No 341
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.64 E-value=0.41 Score=45.04 Aligned_cols=77 Identities=26% Similarity=0.317 Sum_probs=43.6
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCH---------------------HHHHHHHhhchhhhcCCCCCCEE
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDT---------------------MLINVYKEYFPEIAIGYEDSRVI 125 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~---------------------~vi~~a~~~~~~~~~~~~~~rv~ 125 (299)
...+||+||+|+ |......+...++.+++.||-|. .-++.+++.+.... .+-+++
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in---p~v~i~ 99 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN---SEVEIV 99 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC---CCcEEE
Confidence 357899999985 33333333344788999999985 12344445454431 123445
Q ss_pred EEEccHH-HHHHhcCCCCccEEEE
Q 037807 126 LHVCDGS-EYLKTVQSGTFDAIII 148 (299)
Q Consensus 126 v~~~D~~-~~l~~~~~~~fDvIi~ 148 (299)
.+..|.. +.+.+. -..+|+||.
T Consensus 100 ~~~~~~~~~~~~~~-~~~~DlVid 122 (338)
T PRK12475 100 PVVTDVTVEELEEL-VKEVDLIID 122 (338)
T ss_pred EEeccCCHHHHHHH-hcCCCEEEE
Confidence 5555542 223332 356998885
No 342
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=92.63 E-value=1.2 Score=41.42 Aligned_cols=100 Identities=18% Similarity=0.131 Sum_probs=60.2
Q ss_pred CCCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCcc
Q 037807 67 PNPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTFD 144 (299)
Q Consensus 67 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~fD 144 (299)
....+||+.|+|. |..+.++++..+...|++++.+++-.+.+++. .. +.-+.....|..+.+.+. ..+.+|
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga------~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GA------TIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC------CEEECCCccCHHHHHHHHhCCCCCC
Confidence 3467899997532 22334455655555789999999988888663 21 111122223444444332 234599
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+|+-.... ...++.+.+.|+++|.++.-.
T Consensus 244 ~vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 244 VSFDCAGV----------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred EEEECCCC----------HHHHHHHHHhccCCCEEEEEc
Confidence 99843221 345778889999999988643
No 343
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.63 E-value=1.7 Score=42.11 Aligned_cols=111 Identities=17% Similarity=0.169 Sum_probs=63.0
Q ss_pred CeEEEEeccccHH--HHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHh----------
Q 037807 70 KKVLLIGGGDGGI--LREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKT---------- 137 (299)
Q Consensus 70 ~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~---------- 137 (299)
++|.+||.|--+. +..+++.. -+|+++|+|++.++..+.-.. .+...+..+.+++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G--~~V~~~D~~~~~v~~l~~g~~-----------~~~e~~l~~~l~~~~~~g~l~~~ 70 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ--KQVIGVDINQHAVDTINRGEI-----------HIVEPDLDMVVKTAVEGGYLRAT 70 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC--CEEEEEeCCHHHHHHHHCCCC-----------CcCCCCHHHHHHHHhhcCceeee
Confidence 5799999986544 33344543 579999999999886443211 1111111111110
Q ss_pred cCCCCccEEEEcCCCCCCCC--CCC-CcHHHHHHHHHhcCCCcEEEEecCCcccchHHH
Q 037807 138 VQSGTFDAIIIDAFDPIRPG--HDL-FEGPFFELVAKALRPGGAMCIQAESLWFQQFSV 193 (299)
Q Consensus 138 ~~~~~fDvIi~D~~~~~~~~--~~l-~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~ 193 (299)
...+..|+|++..+.|.... ..+ +..+..+.+.+.|++|-+++..++.+....+.+
T Consensus 71 ~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~ 129 (415)
T PRK11064 71 TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQM 129 (415)
T ss_pred cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHH
Confidence 00135799999877763221 111 224556778889999888877665444433333
No 344
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=92.58 E-value=0.94 Score=40.73 Aligned_cols=107 Identities=16% Similarity=0.196 Sum_probs=64.2
Q ss_pred CCCCeEEEEeccccHHHHH---HHh-cC-CccEEEEEECCH--------------------------HHHHHHHhhchhh
Q 037807 67 PNPKKVLLIGGGDGGILRE---ISR-HA-SVEQIHICEIDT--------------------------MLINVYKEYFPEI 115 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~---l~~-~~-~~~~v~~VEid~--------------------------~vi~~a~~~~~~~ 115 (299)
.-|..|+++|+--|+++.. +++ +. ...++.+.|-=+ .-.+..++++...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 3478999999988886644 333 21 235676665321 1344444555433
Q ss_pred hcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcC--CCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 116 AIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDA--FDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 116 ~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~--~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
++.+++++++.|+..+-+...+.+++-++-+|. ..| |.+.++.++.+|.|||++++.-
T Consensus 153 --gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYes--------T~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 153 --GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYES--------TKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp --TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHH--------HHHHHHHHGGGEEEEEEEEESS
T ss_pred --CCCcccEEEECCcchhhhccCCCccEEEEEEeccchHH--------HHHHHHHHHhhcCCCeEEEEeC
Confidence 223579999999998888765556777777764 233 5888999999999999999954
No 345
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=92.56 E-value=1.6 Score=40.26 Aligned_cols=97 Identities=21% Similarity=0.245 Sum_probs=58.1
Q ss_pred CCCCeEEEEeccccHHH---HHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCC
Q 037807 67 PNPKKVLLIGGGDGGIL---REISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGT 142 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~---~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~ 142 (299)
.+..+||+.|+ |.++ .++++..+..+|++++.++.-.+.+++.-. +.-+.....+....+.+. ....
T Consensus 165 ~~g~~vlI~g~--g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~-------~~~v~~~~~~~~~~i~~~~~~~~ 235 (345)
T cd08286 165 KPGDTVAIVGA--GPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGA-------THTVNSAKGDAIEQVLELTDGRG 235 (345)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-------CceeccccccHHHHHHHHhCCCC
Confidence 34678999764 4443 345566554578889999888887775321 111222223333333322 2356
Q ss_pred ccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 143 FDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 143 fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+|+|+ |.... ...++.+.+.|+++|.++.-
T Consensus 236 ~d~vl-d~~g~---------~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 236 VDVVI-EAVGI---------PATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCEEE-ECCCC---------HHHHHHHHHhccCCcEEEEe
Confidence 99988 33211 34577888999999999864
No 346
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=92.48 E-value=3.6 Score=31.75 Aligned_cols=108 Identities=22% Similarity=0.325 Sum_probs=68.6
Q ss_pred eEEEEeccccHHHH--HHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 71 KVLLIGGGDGGILR--EISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 71 ~VL~IG~G~G~~~~--~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
||.+||+|..+... .+.+. +...-+-++|.+++-.+.+.+.+. +. ...|..+.+.+ ...|+|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~----------~~-~~~~~~~ll~~---~~~D~V~ 67 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG----------IP-VYTDLEELLAD---EDVDAVI 67 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT----------SE-EESSHHHHHHH---TTESEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc----------cc-chhHHHHHHHh---hcCCEEE
Confidence 78999998764433 23344 444434478999988776655432 22 67788887763 4799999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhh
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRI 203 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~ 203 (299)
+..+... =++.+.+.|+-|--+++.- ......+..+++.+..++.
T Consensus 68 I~tp~~~----------h~~~~~~~l~~g~~v~~EK-P~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 68 IATPPSS----------HAEIAKKALEAGKHVLVEK-PLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp EESSGGG----------HHHHHHHHHHTTSEEEEES-SSSSSHHHHHHHHHHHHHH
T ss_pred EecCCcc----------hHHHHHHHHHcCCEEEEEc-CCcCCHHHHHHHHHHHHHh
Confidence 8766531 2556667777766555543 2334566677777776654
No 347
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.48 E-value=0.48 Score=40.13 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=22.7
Q ss_pred eEEEEeccc-cHHHHHHHhcCCccEEEEEECCH
Q 037807 71 KVLLIGGGD-GGILREISRHASVEQIHICEIDT 102 (299)
Q Consensus 71 ~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 102 (299)
+||+||+|+ |+.....+.+.++.+++.+|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999984 44333333344788999999986
No 348
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=92.46 E-value=0.53 Score=43.12 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=61.5
Q ss_pred CCeEEEEecc--ccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchh----hh--cCCCC-------CCEEEEEccHHH
Q 037807 69 PKKVLLIGGG--DGGILREISRHASVEQIHICEIDTMLINVYKEYFPE----IA--IGYED-------SRVILHVCDGSE 133 (299)
Q Consensus 69 ~~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~----~~--~~~~~-------~rv~v~~~D~~~ 133 (299)
-++|-+||+| +..++..+++.. .+|+++|.+++.++.+++.+.. .. +.+.. .+++ ...|. +
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~ 79 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAG--MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-E 79 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-H
Confidence 3679999998 444555566553 5799999999998876654321 10 00000 0122 22232 2
Q ss_pred HHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 134 YLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 134 ~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
-+ +.-|+||.-.++... ....+|+.+.+.++++.+++.++.+
T Consensus 80 ~~-----~~aD~Vieav~e~~~-----~k~~v~~~l~~~~~~~~il~s~tS~ 121 (295)
T PLN02545 80 EL-----RDADFIIEAIVESED-----LKKKLFSELDRICKPSAILASNTSS 121 (295)
T ss_pred Hh-----CCCCEEEEcCccCHH-----HHHHHHHHHHhhCCCCcEEEECCCC
Confidence 22 346999987654311 1256788888889998888766544
No 349
>PRK10637 cysG siroheme synthase; Provisional
Probab=92.45 E-value=0.71 Score=45.24 Aligned_cols=77 Identities=18% Similarity=0.175 Sum_probs=45.6
Q ss_pred HhhcccCCCCCCeEEEEeccccHHHH--HHHhcCCccEEEEE--ECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHH
Q 037807 59 THLPLCSIPNPKKVLLIGGGDGGILR--EISRHASVEQIHIC--EIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEY 134 (299)
Q Consensus 59 ~~~~l~~~~~~~~VL~IG~G~G~~~~--~l~~~~~~~~v~~V--Eid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~ 134 (299)
.++|++..-+.++||++|||.=+.-+ .+++.. .+|++| |+++++-+++. ..+++++..+...
T Consensus 2 ~~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~g--a~v~visp~~~~~~~~l~~-----------~~~i~~~~~~~~~- 67 (457)
T PRK10637 2 DHLPIFCQLRDRDCLLVGGGDVAERKARLLLDAG--ARLTVNALAFIPQFTAWAD-----------AGMLTLVEGPFDE- 67 (457)
T ss_pred CeeceEEEcCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHh-----------CCCEEEEeCCCCh-
Confidence 45666655578999999999755432 234443 467776 77777655433 2466766655322
Q ss_pred HHhcCCCCccEEEEcCCC
Q 037807 135 LKTVQSGTFDAIIIDAFD 152 (299)
Q Consensus 135 l~~~~~~~fDvIi~D~~~ 152 (299)
.. -..+++||....|
T Consensus 68 --~d-l~~~~lv~~at~d 82 (457)
T PRK10637 68 --SL-LDTCWLAIAATDD 82 (457)
T ss_pred --HH-hCCCEEEEECCCC
Confidence 11 1346787765444
No 350
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.41 E-value=1.2 Score=45.46 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=61.9
Q ss_pred CCeEEEEeccccHH-HHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHH--HHHhcCCCCccE
Q 037807 69 PKKVLLIGGGDGGI-LREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSE--YLKTVQSGTFDA 145 (299)
Q Consensus 69 ~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~--~l~~~~~~~fDv 145 (299)
..+|+++|+|.=+- ..+.++..+ .+++++|.|++.++.+++. ..+++.+|+.+ .+++..-++.|+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG-VKMTVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAEV 467 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHhc-----------CCeEEEEeCCCHHHHHhcCCCcCCE
Confidence 46899999985332 222233222 4799999999999988762 35789999854 555543468999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecC
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
+++-..++.. ....-...+.+.|+-.+++.+.
T Consensus 468 vvv~~~d~~~-------n~~i~~~ar~~~p~~~iiaRa~ 499 (621)
T PRK03562 468 LINAIDDPQT-------SLQLVELVKEHFPHLQIIARAR 499 (621)
T ss_pred EEEEeCCHHH-------HHHHHHHHHHhCCCCeEEEEEC
Confidence 9987655421 1122234556677776666543
No 351
>PRK08618 ornithine cyclodeaminase; Validated
Probab=92.40 E-value=3.1 Score=38.81 Aligned_cols=136 Identities=14% Similarity=0.205 Sum_probs=71.2
Q ss_pred cEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccHH--HHHHHhcCCccEEEEEECCH
Q 037807 25 NMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGI--LREISRHASVEQIHICEIDT 102 (299)
Q Consensus 25 ~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~ 102 (299)
.|.+++.........+||...+.-+.... . .++ ..++..++.++|++||+|.=+- +..++...+.++|..++.++
T Consensus 86 ~i~l~d~~tG~p~a~~d~~~lT~~RTaa~-s-ala-~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~ 162 (325)
T PRK08618 86 TVILSDFETGEVLAILDGTYLTQIRTGAL-S-GVA-TKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTF 162 (325)
T ss_pred EEEEEeCCCCceEEEEccchhhhhhHHHH-H-HHH-HHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCH
Confidence 34444444322344556665554333111 1 111 1123345788999999985332 22333445678999999998
Q ss_pred HHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 103 MLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 103 ~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+-.+...+.+... + ..++. ...|..+.+ ...|+|++-.+... .++. +.|+| |..+..
T Consensus 163 ~~a~~~~~~~~~~---~-~~~~~-~~~~~~~~~-----~~aDiVi~aT~s~~---------p~i~---~~l~~-G~hV~~ 219 (325)
T PRK08618 163 EKAYAFAQEIQSK---F-NTEIY-VVNSADEAI-----EEADIIVTVTNAKT---------PVFS---EKLKK-GVHINA 219 (325)
T ss_pred HHHHHHHHHHHHh---c-CCcEE-EeCCHHHHH-----hcCCEEEEccCCCC---------cchH---HhcCC-CcEEEe
Confidence 8766554444321 0 11222 245655544 34799997655431 1232 56787 555555
Q ss_pred cCCc
Q 037807 183 AESL 186 (299)
Q Consensus 183 ~~s~ 186 (299)
.++.
T Consensus 220 iGs~ 223 (325)
T PRK08618 220 VGSF 223 (325)
T ss_pred cCCC
Confidence 5543
No 352
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.38 E-value=0.87 Score=39.37 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=23.3
Q ss_pred CCeEEEEeccccHHHHHHH---hcCCccEEEEEECCH
Q 037807 69 PKKVLLIGGGDGGILREIS---RHASVEQIHICEIDT 102 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~---~~~~~~~v~~VEid~ 102 (299)
..+||++|+|+ ++.+++ -..++.+++.+|-|.
T Consensus 19 ~s~VlviG~gg--lGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGA--LGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCH--HHHHHHHHHHHcCCCEEEEEECCc
Confidence 46899999984 444433 355789999998773
No 353
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=92.36 E-value=0.32 Score=44.96 Aligned_cols=107 Identities=17% Similarity=0.200 Sum_probs=62.8
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhc------------hhhh---c--CC------------
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYF------------PEIA---I--GY------------ 119 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~------------~~~~---~--~~------------ 119 (299)
+.+||+=|||.|.++..++..... +-+=|.+--|+=...=-+ |..+ . ..
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~--~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFK--CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred CceEEecCCCchhHHHHHHHhccc--ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 568999999999999999876432 333365555443222101 0000 0 00
Q ss_pred -------CCCCEEEEEccHHHHHHhc-CCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 120 -------EDSRVILHVCDGSEYLKTV-QSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 120 -------~~~rv~v~~~D~~~~l~~~-~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
....+.+-.||..+..... ..+.||+|+...+-..... -.|+++.+.+.|+|||+.+-
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~N----ileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHN----ILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHH----HHHHHHHHHHhccCCcEEEe
Confidence 0112445567766655432 1347999997533221110 27899999999999998874
No 354
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.34 E-value=0.69 Score=42.37 Aligned_cols=102 Identities=15% Similarity=0.216 Sum_probs=64.2
Q ss_pred CeEEEEecc--ccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhh------cCCCC-------CCEEEEEccHHHH
Q 037807 70 KKVLLIGGG--DGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIA------IGYED-------SRVILHVCDGSEY 134 (299)
Q Consensus 70 ~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~------~~~~~-------~rv~v~~~D~~~~ 134 (299)
++|-+||+| +++++..+++.. .+|+.+|.+++.++.+++.+...- +.... .++++ ..|. +-
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG--VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-GD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-HH
Confidence 589999998 455666666653 579999999999998776543220 00100 12332 2333 21
Q ss_pred HHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhc-CCCcEEEEecCC
Q 037807 135 LKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKAL-RPGGAMCIQAES 185 (299)
Q Consensus 135 l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~L-kpgGvlv~~~~s 185 (299)
+ ...|+||-..++... ...++|..+.+.+ +|+.+++.++.+
T Consensus 82 ~-----~~~d~ViEav~E~~~-----~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 82 F-----ADRQLVIEAVVEDEA-----VKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred h-----CCCCEEEEecccCHH-----HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 2 346999976554311 1367888888888 788888877643
No 355
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.27 E-value=1.2 Score=38.85 Aligned_cols=89 Identities=18% Similarity=0.166 Sum_probs=52.4
Q ss_pred CCCeEEEEeccccHH--HHHHHhcCCccEEEEEECC--HHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCc
Q 037807 68 NPKKVLLIGGGDGGI--LREISRHASVEQIHICEID--TMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTF 143 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid--~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~f 143 (299)
+.++||+||+|.=+. ++.+++.. ..|++|+.+ ++..++++ ..+++++..+..... -..+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~~~~~l~~l~~-----------~~~i~~~~~~~~~~d----l~~~ 70 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEELESELTLLAE-----------QGGITWLARCFDADI----LEGA 70 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHH-----------cCCEEEEeCCCCHHH----hCCc
Confidence 567999999986443 33445543 578888654 33333322 237888877754221 2468
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+||....++ +.-..+.+..+..|+++-.+
T Consensus 71 ~lVi~at~d~----------~ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 71 FLVIAATDDE----------ELNRRVAHAARARGVPVNVV 100 (205)
T ss_pred EEEEECCCCH----------HHHHHHHHHHHHcCCEEEEC
Confidence 9999765543 22334444455568887533
No 356
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=92.26 E-value=1.7 Score=40.85 Aligned_cols=99 Identities=16% Similarity=0.117 Sum_probs=59.8
Q ss_pred CCCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEc--cHHHHHHhcCCCCc
Q 037807 67 PNPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVC--DGSEYLKTVQSGTF 143 (299)
Q Consensus 67 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~--D~~~~l~~~~~~~f 143 (299)
....+||++|+|. |..+.++++..+..+|++++.+++-.+.+++. .. +.-+..... |..+.+.+...+.+
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF-GA------TDCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------CEEEcccccchHHHHHHHHHhCCCC
Confidence 3568899997643 22344566666665799999999998888653 21 111111111 24444443323479
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCC-cEEEEe
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPG-GAMCIQ 182 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~Lkpg-Gvlv~~ 182 (299)
|+|+-- ... ...+....+.|+++ |.++.-
T Consensus 258 d~vid~-~g~---------~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 258 DYTFEC-IGN---------VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred cEEEEC-CCC---------hHHHHHHHHhhccCCCeEEEE
Confidence 988832 211 34677788899887 988764
No 357
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.25 E-value=0.72 Score=41.96 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=26.7
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCH
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDT 102 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 102 (299)
...+||++|+|+ |+.+.+.+...++.+++.+|.|.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 457899999984 55556656566789999999884
No 358
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=92.20 E-value=0.8 Score=42.07 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=24.0
Q ss_pred CCeEEEEeccccHHHHHHHh---cCCccEEEEEECCH
Q 037807 69 PKKVLLIGGGDGGILREISR---HASVEQIHICEIDT 102 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~ 102 (299)
..+||++|+| +++.++++ ..++.+++.+|-|.
T Consensus 19 ~s~VLIvG~g--GLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 19 KSNVLISGLG--GLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred cCcEEEEcCC--HHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 5689999997 34455544 45789999999875
No 359
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.15 E-value=1.1 Score=41.21 Aligned_cols=91 Identities=21% Similarity=0.138 Sum_probs=54.9
Q ss_pred CCeEEEEeccccH--HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 69 PKKVLLIGGGDGG--ILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 69 ~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
-.+|.+||+|.-+ +++.+.+.....+|+++|.+++..+.+++. .. ... ...+..+.+ +..|+|
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g~--------~~~-~~~~~~~~~-----~~aDvV 70 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-GL--------GDR-VTTSAAEAV-----KGADLV 70 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-CC--------Cce-ecCCHHHHh-----cCCCEE
Confidence 3589999988622 344444443224799999999887777642 10 011 122322222 357999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
|+-.+... ..++++.+...++++.+++.
T Consensus 71 iiavp~~~-------~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 71 ILCVPVGA-------SGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred EECCCHHH-------HHHHHHHHHhhCCCCCEEEe
Confidence 98765431 25667777778888876543
No 360
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=92.14 E-value=0.31 Score=42.17 Aligned_cols=114 Identities=16% Similarity=0.052 Sum_probs=62.4
Q ss_pred CCCCCeEEEEeccccHHHHHHHhcCC-ccEEEEEECCHHHHHHHHhhchhhhcCC---CCCCEEEEEccHHHHHHhcCCC
Q 037807 66 IPNPKKVLLIGGGDGGILREISRHAS-VEQIHICEIDTMLINVYKEYFPEIAIGY---EDSRVILHVCDGSEYLKTVQSG 141 (299)
Q Consensus 66 ~~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~---~~~rv~v~~~D~~~~l~~~~~~ 141 (299)
.+....|.++=-|+|..++-++..-+ ...|..+-.++ ....+..+-+...... -..+++++-.+...+. +.+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e-~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~---~pq 121 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE-LTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG---APQ 121 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh-hcccccchhhhhhhhhhhhhhhhhhhhCCcccccC---CCC
Confidence 34567899999999999999887432 33555543322 2222222111110000 0123444434433332 245
Q ss_pred CccEEEEcCCCCCCCC---CCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 142 TFDAIIIDAFDPIRPG---HDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 142 ~fDvIi~D~~~~~~~~---~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
..|+++....+..... ..-+...+++.+.+.|||||++++..
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 6777776444432110 11234789999999999999998853
No 361
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.14 E-value=0.41 Score=40.15 Aligned_cols=106 Identities=16% Similarity=0.208 Sum_probs=54.6
Q ss_pred CCCeEEEEeccccH-HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhh-cCC--CCCCEEE--------EEccHHHHH
Q 037807 68 NPKKVLLIGGGDGG-ILREISRHASVEQIHICEIDTMLINVYKEYFPEIA-IGY--EDSRVIL--------HVCDGSEYL 135 (299)
Q Consensus 68 ~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-~~~--~~~rv~v--------~~~D~~~~l 135 (299)
+|.+|+++|.|.=+ -+.++++.-+ .+++..|..++..+..+......- ... ...+-.+ ....-..|.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 97 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA 97 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC-CEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence 57899999998744 3455555444 579999999998887766543210 000 0000000 000111111
Q ss_pred HhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEE
Q 037807 136 KTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMC 180 (299)
Q Consensus 136 ~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv 180 (299)
+. -..+|+||.....+....+.|.|.+-. +.|+|+-+++
T Consensus 98 ~~--i~~~d~vI~~~~~~~~~~P~lvt~~~~----~~m~~gsvIv 136 (168)
T PF01262_consen 98 EF--IAPADIVIGNGLYWGKRAPRLVTEEMV----KSMKPGSVIV 136 (168)
T ss_dssp HH--HHH-SEEEEHHHBTTSS---SBEHHHH----HTSSTTEEEE
T ss_pred HH--HhhCcEEeeecccCCCCCCEEEEhHHh----hccCCCceEE
Confidence 11 245899998766555566778887754 4567655444
No 362
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=92.04 E-value=1.7 Score=41.01 Aligned_cols=98 Identities=16% Similarity=0.106 Sum_probs=58.9
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEE--EccHHHHHHhcCCCCcc
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILH--VCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~--~~D~~~~l~~~~~~~fD 144 (299)
...+||+.|+|. |..+.++++..+..+|++++.+++-.+.+++. .. +.-+... ..+..+.+.+...+.+|
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~d 257 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL-GA------TDCVNPNDYDKPIQEVIVEITDGGVD 257 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC------CeEEcccccchhHHHHHHHHhCCCCC
Confidence 467899998753 33455567766666799999999999988763 21 1111111 11222333332134689
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCC-cEEEEe
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPG-GAMCIQ 182 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~Lkpg-Gvlv~~ 182 (299)
+|+--... ...+..+.+.|+++ |.++.-
T Consensus 258 ~vid~~G~----------~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 258 YSFECIGN----------VNVMRAALECCHKGWGESIII 286 (368)
T ss_pred EEEECCCC----------HHHHHHHHHHhhcCCCeEEEE
Confidence 88733221 34567778889886 988764
No 363
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=92.03 E-value=1.7 Score=39.76 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=63.2
Q ss_pred CCeEEEEeccc--cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 69 PKKVLLIGGGD--GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 69 ~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
..+|+++|.|. |.+++.+.+......|++.|.+....+.+.+. ... +.. ..+ ..... ....|+|
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~-----d~~----~~~---~~~~~-~~~aD~V 68 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVI-----DEL----TVA---GLAEA-AAEADLV 68 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-Ccc-----ccc----ccc---hhhhh-cccCCEE
Confidence 35788888773 44555555444455678888888777766542 110 110 001 11111 3568999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhcCC
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIFKG 206 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F~~ 206 (299)
|+..+-. .+.++++++...|++|.+++ ..+|. -..+++.+++..++
T Consensus 69 ivavPi~-------~~~~~l~~l~~~l~~g~iv~-Dv~S~------K~~v~~a~~~~~~~ 114 (279)
T COG0287 69 IVAVPIE-------ATEEVLKELAPHLKKGAIVT-DVGSV------KSSVVEAMEKYLPG 114 (279)
T ss_pred EEeccHH-------HHHHHHHHhcccCCCCCEEE-ecccc------cHHHHHHHHHhccC
Confidence 9876543 24778888888888865554 44342 23455566655533
No 364
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.97 E-value=1.2 Score=40.72 Aligned_cols=102 Identities=23% Similarity=0.275 Sum_probs=61.6
Q ss_pred CeEEEEeccccH--HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhh------cCCC--------CCCEEEEEccHHH
Q 037807 70 KKVLLIGGGDGG--ILREISRHASVEQIHICEIDTMLINVYKEYFPEIA------IGYE--------DSRVILHVCDGSE 133 (299)
Q Consensus 70 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~------~~~~--------~~rv~v~~~D~~~ 133 (299)
++|.+||+|.-+ ++..+++. + .+|+++|.+++.++.+++.+.... ..+. ..++++ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-G-FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 579999998543 33334444 2 479999999999888876532210 0110 023332 344333
Q ss_pred HHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecC
Q 037807 134 YLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 134 ~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
.+ +.-|+||.-.+.... ...++++.+...++++-+++.++.
T Consensus 81 a~-----~~aDlVieavpe~~~-----~k~~~~~~l~~~~~~~~ii~sntS 121 (287)
T PRK08293 81 AV-----KDADLVIEAVPEDPE-----IKGDFYEELAKVAPEKTIFATNSS 121 (287)
T ss_pred Hh-----cCCCEEEEeccCCHH-----HHHHHHHHHHhhCCCCCEEEECcc
Confidence 32 346999987664310 126778888888888887776653
No 365
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=91.96 E-value=1.5 Score=41.25 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=60.0
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
...+||+.|+|. |..+..+++..+...+++++.++.-.+.+++. .. +.-+.....+..+.+.+.....+|+|
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~-g~------~~~i~~~~~~~~~~v~~~~~~~~d~v 258 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL-GA------THVINPKEEDLVAAIREITGGGVDYA 258 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------cEEecCCCcCHHHHHHHHhCCCCcEE
Confidence 467899997543 44455566766666799999999888877653 11 00011111123333332214569998
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+--... ...+..+.+.|+++|.++.-.
T Consensus 259 ld~~g~----------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 259 LDTTGV----------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred EECCCC----------cHHHHHHHHHhccCCEEEEeC
Confidence 843211 235778889999999988643
No 366
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=91.96 E-value=1.4 Score=40.96 Aligned_cols=93 Identities=10% Similarity=0.144 Sum_probs=56.9
Q ss_pred CCCCeEEEEeccccH-HHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCcc
Q 037807 67 PNPKKVLLIGGGDGG-ILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~-~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fD 144 (299)
....+||++|+|.=+ ++..++++ .+..+|+++|.+++-++.+++ +.. . .... ++.. ...+|
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~------~----~~~~---~~~~---~~g~d 224 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE------T----YLID---DIPE---DLAVD 224 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc------e----eehh---hhhh---ccCCc
Confidence 346789999976433 33455654 345679999999988888875 211 0 1111 1111 22489
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+|+ |..... .+...+....+.|+++|.+++-.
T Consensus 225 ~vi-D~~G~~------~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 225 HAF-ECVGGR------GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred EEE-ECCCCC------ccHHHHHHHHHhCcCCcEEEEEe
Confidence 887 433210 01456788889999999988643
No 367
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.86 E-value=0.83 Score=41.74 Aligned_cols=100 Identities=15% Similarity=0.255 Sum_probs=59.5
Q ss_pred CeEEEEeccc--cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchh-------h-h-cCCCC-------CCEEEEEccH
Q 037807 70 KKVLLIGGGD--GGILREISRHASVEQIHICEIDTMLINVYKEYFPE-------I-A-IGYED-------SRVILHVCDG 131 (299)
Q Consensus 70 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-------~-~-~~~~~-------~rv~v~~~D~ 131 (299)
++|.+||+|. +.++..++++. .+|+++|.+++.++.+++.+.. . . +.... .+++.. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG--YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 5799999994 34555555553 4799999999999876653321 0 0 00000 122221 222
Q ss_pred HHHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 132 SEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 132 ~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+-+ ...|+||.-.+.... ...++++.+.+.++++.+++.++
T Consensus 81 -~~~-----~~aDlVieav~e~~~-----~k~~~~~~l~~~~~~~~il~S~t 121 (291)
T PRK06035 81 -ESL-----SDADFIVEAVPEKLD-----LKRKVFAELERNVSPETIIASNT 121 (291)
T ss_pred -HHh-----CCCCEEEEcCcCcHH-----HHHHHHHHHHhhCCCCeEEEEcC
Confidence 111 346999976654311 12678888888898888877654
No 368
>PRK11524 putative methyltransferase; Provisional
Probab=91.85 E-value=0.33 Score=44.36 Aligned_cols=57 Identities=14% Similarity=-0.012 Sum_probs=44.7
Q ss_pred HHHHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchh
Q 037807 56 EMITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPE 114 (299)
Q Consensus 56 e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~ 114 (299)
+++..+......+..-|||--+|+|+++..+.+.. .+..++|+|++-+++|++.+..
T Consensus 196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 34444433334567789999999999999888774 6799999999999999998753
No 369
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.80 E-value=5.1 Score=36.50 Aligned_cols=144 Identities=18% Similarity=0.188 Sum_probs=85.4
Q ss_pred eEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHh-cCCCCccEEEEc
Q 037807 71 KVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKT-VQSGTFDAIIID 149 (299)
Q Consensus 71 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~~fDvIi~D 149 (299)
+|+++-+|.|++..-+.+. +..-+.++|+|+...+.-+.+++ .+..+|..+.-.. .+. ..|+|+.-
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccc-cceEEEec
Confidence 6899999999999888766 46788999999999998888763 7778887765432 222 59999986
Q ss_pred CCCCC----CC-------CCCCCcHHHHHHHHHhcCCCcEEEEecCCcccc--hHHHHHHHHHHhhhcCCceeeeEEeec
Q 037807 150 AFDPI----RP-------GHDLFEGPFFELVAKALRPGGAMCIQAESLWFQ--QFSVQHLIDDCHRIFKGSASYAWTTVP 216 (299)
Q Consensus 150 ~~~~~----~~-------~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~--~~~~~~~~~~l~~~F~~~v~~~~~~vP 216 (299)
++-.. +. ...|+ .++++. .+.++|.-+++=|+...... ...+..+++.|.+.= ..+.......-
T Consensus 69 pPCQ~fS~ag~~~~~~d~r~~L~-~~~~~~-v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lG-Y~v~~~vlna~ 145 (335)
T PF00145_consen 69 PPCQGFSIAGKRKGFDDPRNSLF-FEFLRI-VKELKPKYFLLENVPGLLSSKNGEVFKEILEELEELG-YNVQWRVLNAA 145 (335)
T ss_dssp ---TTTSTTSTHHCCCCHTTSHH-HHHHHH-HHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTT-EEEEEEEEEGG
T ss_pred cCCceEeccccccccccccchhh-HHHHHH-HhhccceEEEecccceeeccccccccccccccccccc-eeehhccccHh
Confidence 54321 11 11222 344444 45678987777666433322 245777777776541 22332222222
Q ss_pred ccCC---cceeEEeccc
Q 037807 217 TYPS---GVIGFMLCST 230 (299)
Q Consensus 217 ~~~~---g~w~~~~ask 230 (299)
-|+- -.-.|++|++
T Consensus 146 ~yGvPQ~R~R~fivg~r 162 (335)
T PF00145_consen 146 DYGVPQNRERVFIVGIR 162 (335)
T ss_dssp GGTSSBE-EEEEEEEEE
T ss_pred hCCCCCceeeEEEEEEC
Confidence 2311 2356888887
No 370
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=91.72 E-value=2.9 Score=39.29 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=64.4
Q ss_pred CCeEEEEeccccH-HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 69 PKKVLLIGGGDGG-ILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 69 ~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
..+|.++|+|+=+ .+..-++.-+..+|++||++++-+++|+++=... .++..... |..+.+.+..+.-.|..+
T Consensus 186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~--~vn~~~~~----~vv~~i~~~T~gG~d~~~ 259 (366)
T COG1062 186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATH--FVNPKEVD----DVVEAIVELTDGGADYAF 259 (366)
T ss_pred CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCce--eecchhhh----hHHHHHHHhcCCCCCEEE
Confidence 4678888887633 3444456667889999999999999999862211 01111111 677777665344677774
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
|.... .+.++...+.+.++|..++-
T Consensus 260 -e~~G~---------~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 260 -ECVGN---------VEVMRQALEATHRGGTSVII 284 (366)
T ss_pred -EccCC---------HHHHHHHHHHHhcCCeEEEE
Confidence 32221 56788889999999987763
No 371
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.64 E-value=0.63 Score=41.40 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=25.6
Q ss_pred CCeEEEEecc-ccHHHHHHHhcCCccEEEEEECCH
Q 037807 69 PKKVLLIGGG-DGGILREISRHASVEQIHICEIDT 102 (299)
Q Consensus 69 ~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~ 102 (299)
..+||++|+| .|+...+.+.+.++.+++.||-|.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 5689999997 455555555566789999999875
No 372
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=91.63 E-value=2.1 Score=40.15 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=59.0
Q ss_pred CCCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEE--ccHHHHHHhcCCCCc
Q 037807 67 PNPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHV--CDGSEYLKTVQSGTF 143 (299)
Q Consensus 67 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~--~D~~~~l~~~~~~~f 143 (299)
....+||++|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+.... .+..+.+.+...+.+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga------~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GA------TDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------CcEeccccccchHHHHHHHHhCCCC
Confidence 3568999997643 22344566766666899999999988888653 21 10111111 122333333223569
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCC-cEEEEec
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPG-GAMCIQA 183 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~Lkpg-Gvlv~~~ 183 (299)
|+|+-- ... ...+....+.|+++ |.++.-.
T Consensus 256 d~vid~-~g~---------~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 256 DYSFEC-TGN---------ADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CEEEEC-CCC---------hHHHHHHHHhcccCCCEEEEEc
Confidence 988832 211 34567788889885 9887643
No 373
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.62 E-value=1.4 Score=44.13 Aligned_cols=95 Identities=12% Similarity=0.134 Sum_probs=61.2
Q ss_pred CeEEEEeccccHHHHHHHhc--CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHH--HHHhcCCCCccE
Q 037807 70 KKVLLIGGGDGGILREISRH--ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSE--YLKTVQSGTFDA 145 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~--~l~~~~~~~fDv 145 (299)
.+|+++|+|. .++.+++. ....++++||.|++.++.+++. ...++.+|+.+ .+++..-++.|.
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----------g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----------GIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----------CCeEEEcCCCCHHHHHhcCccccCE
Confidence 5789999875 44444431 1124799999999998888752 46788899854 445443468998
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecC
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
+++...+... ....-.+.+.+.|+..++....
T Consensus 485 viv~~~~~~~-------~~~iv~~~~~~~~~~~iiar~~ 516 (558)
T PRK10669 485 LLLTIPNGYE-------AGEIVASAREKRPDIEIIARAH 516 (558)
T ss_pred EEEEcCChHH-------HHHHHHHHHHHCCCCeEEEEEC
Confidence 8876555411 1123344566678887777653
No 374
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=91.58 E-value=0.79 Score=45.55 Aligned_cols=104 Identities=11% Similarity=0.152 Sum_probs=65.8
Q ss_pred CCCeEEEEecc--ccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhh------cCCC-------CCCEEEEEccHH
Q 037807 68 NPKKVLLIGGG--DGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIA------IGYE-------DSRVILHVCDGS 132 (299)
Q Consensus 68 ~~~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~------~~~~-------~~rv~v~~~D~~ 132 (299)
+-++|-+||+| +++++..+++.. -.|++.|.+++.++.+++++...- +.+. -.+++.. .|..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG--~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 82 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAG--HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALA 82 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 45789999998 445666666653 579999999999998766543220 1010 0134433 2322
Q ss_pred HHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 133 EYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 133 ~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
+ . ...|+||--.++.... ...+|+.+.+.++++.++++|+.+
T Consensus 83 ~----~--~~aDlViEav~E~~~v-----K~~vf~~l~~~~~~~ailasntSt 124 (507)
T PRK08268 83 D----L--ADCDLVVEAIVERLDV-----KQALFAQLEAIVSPDCILATNTSS 124 (507)
T ss_pred H----h--CCCCEEEEcCcccHHH-----HHHHHHHHHhhCCCCcEEEECCCC
Confidence 1 2 2579999776654221 256778888888898888877643
No 375
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=91.57 E-value=1.5 Score=44.53 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=62.7
Q ss_pred CeEEEEeccccHH--HHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHH--HHHhcCCCCccE
Q 037807 70 KKVLLIGGGDGGI--LREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSE--YLKTVQSGTFDA 145 (299)
Q Consensus 70 ~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~--~l~~~~~~~fDv 145 (299)
.+|+++|+|.=+. ++.+.++ ..+++++|.|++.++.+++. ...++.+|+.+ .+++..-++.|+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKY-----------GYKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHHHHHhcCCccCCE
Confidence 5799998875332 2223333 24799999999999988752 35788999854 555544568999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
|++-..++.. ....-...|.+.|+..+++.+.+
T Consensus 468 vv~~~~d~~~-------n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 468 IVITCNEPED-------TMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred EEEEeCCHHH-------HHHHHHHHHHHCCCCeEEEEeCC
Confidence 9987665421 11222345668899888876644
No 376
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=91.43 E-value=0.72 Score=43.52 Aligned_cols=50 Identities=28% Similarity=0.325 Sum_probs=40.7
Q ss_pred CCCCCeEEEEeccccHHHHHHHhc-----C---CccEEEEEECCHHHHHHHHhhchhh
Q 037807 66 IPNPKKVLLIGGGDGGILREISRH-----A---SVEQIHICEIDTMLINVYKEYFPEI 115 (299)
Q Consensus 66 ~~~~~~VL~IG~G~G~~~~~l~~~-----~---~~~~v~~VEid~~vi~~a~~~~~~~ 115 (299)
.|.+..+++||.|.|.+++-+++. | ...++..||++++..+.-++.+...
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 355788999999999999887762 1 3578999999999999888877643
No 377
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=91.24 E-value=3.4 Score=38.03 Aligned_cols=99 Identities=19% Similarity=0.214 Sum_probs=58.5
Q ss_pred CCCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.+..+||+.|+|. |..+..+++..+...|+++.-+++..+.++++ .. +.-+........+.........+|+
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~d~ 230 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL-GA------DDTINPKEEDVEKVRELTEGRGADL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CC------CEEecCccccHHHHHHHhCCCCCCE
Confidence 3467899997654 45556667766665588888888877766543 11 0011111111122222222345999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
|+-... . ...+..+.+.|+++|.++.-
T Consensus 231 vld~~g-~---------~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 231 VIEAAG-S---------PATIEQALALARPGGKVVLV 257 (343)
T ss_pred EEECCC-C---------HHHHHHHHHHhhcCCEEEEE
Confidence 984321 1 44678889999999998864
No 378
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=91.16 E-value=2.3 Score=39.89 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=58.9
Q ss_pred CCCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEE--ccHHHHHHhcCCCCc
Q 037807 67 PNPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHV--CDGSEYLKTVQSGTF 143 (299)
Q Consensus 67 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~--~D~~~~l~~~~~~~f 143 (299)
....+||+.|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+.... .+..+.+++...+.+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~~~ 258 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF-GV------TEFVNPKDHDKPVQEVIAEMTGGGV 258 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcccccchhHHHHHHHHhCCCC
Confidence 3467899997642 22334456666666899999999999988763 21 11111111 122233433323468
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCC-cEEEEec
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPG-GAMCIQA 183 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~Lkpg-Gvlv~~~ 183 (299)
|+++ |.... ........+.++++ |.++...
T Consensus 259 d~vi-d~~G~---------~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 259 DYSF-ECTGN---------IDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred CEEE-ECCCC---------hHHHHHHHHHhhcCCCEEEEEC
Confidence 9777 32211 44677788899996 9888643
No 379
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=91.16 E-value=2.9 Score=37.51 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=82.1
Q ss_pred EEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc--CCCCccEEEEc
Q 037807 72 VLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV--QSGTFDAIIID 149 (299)
Q Consensus 72 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~~fDvIi~D 149 (299)
=|..=+|+=-+++.+++-. .++...|+-|+=....+++|. .+.++++..+|++.-+... ++++=-+|++|
T Consensus 92 ~l~~YpGSP~lA~~llR~q--DRl~l~ELHp~D~~~L~~~f~------~d~~vrv~~~DG~~~l~a~LPP~erRglVLID 163 (279)
T COG2961 92 GLRYYPGSPLLARQLLREQ--DRLVLTELHPSDAPLLRNNFA------GDRRVRVLRGDGFLALKAHLPPKERRGLVLID 163 (279)
T ss_pred CcccCCCCHHHHHHHcchh--ceeeeeecCccHHHHHHHHhC------CCcceEEEecCcHHHHhhhCCCCCcceEEEeC
Confidence 3777788888999988753 689999999999999999887 3789999999999888764 35567899999
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhh
Q 037807 150 AFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRI 203 (299)
Q Consensus 150 ~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~ 203 (299)
++......... ..+-+++.+++- ++|+.++-- |....+.++.+.+.+++.
T Consensus 164 PPfE~~~eY~r-vv~~l~~~~kRf-~~g~yaiWY--Pik~r~~~~~f~~~L~~~ 213 (279)
T COG2961 164 PPFELKDEYQR-VVEALAEAYKRF-ATGTYAIWY--PIKDRRQIRRFLRALEAL 213 (279)
T ss_pred CCcccccHHHH-HHHHHHHHHHhh-cCceEEEEE--eecchHHHHHHHHHHhhc
Confidence 86542211000 012222222222 468877632 334456677788888765
No 380
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=91.14 E-value=1.8 Score=39.70 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=57.9
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHH--HhcCCCCcc
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYL--KTVQSGTFD 144 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l--~~~~~~~fD 144 (299)
...+||++|+|. |..+.++++..+...|++++-+++..+.+++.-. + .++..+-..+. +....+.+|
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-------~---~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA-------T---ETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-------e---EEecCCCCCHHHHHHhcCCCCc
Confidence 457999997542 4455566666555558889999988887765321 0 11111111110 222246799
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+|+.-... ......+.+.|+++|.++.-
T Consensus 229 ~v~~~~~~----------~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 229 VVIEATGV----------PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred EEEECCCC----------hHHHHHHHHHHhcCCEEEEE
Confidence 99843211 35677888999999998863
No 381
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=91.09 E-value=2 Score=36.10 Aligned_cols=94 Identities=17% Similarity=0.227 Sum_probs=55.3
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+..+|+.||+=+-.....- ...+..++...|+|...-....+.|-.. .++.| .++.... .++||+||
T Consensus 25 ~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~~~~F~fy--D~~~p---------~~~~~~l-~~~~d~vv 91 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFGGDEFVFY--DYNEP---------EELPEEL-KGKFDVVV 91 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcCCcceEEC--CCCCh---------hhhhhhc-CCCceEEE
Confidence 4579999998865444332 1234568999999998755332212111 00111 1222333 57899999
Q ss_pred EcCCCCCCCCCCCCcHHHH----HHHHHhcCCCcEEEEe
Q 037807 148 IDAFDPIRPGHDLFEGPFF----ELVAKALRPGGAMCIQ 182 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~----~~~~~~LkpgGvlv~~ 182 (299)
+|++- .+.+.+ +.++..+++++.+++-
T Consensus 92 ~DPPF--------l~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 92 IDPPF--------LSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred ECCCC--------CCHHHHHHHHHHHHHHhCccceEEEe
Confidence 99765 235555 4445566887877763
No 382
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.05 E-value=0.92 Score=39.73 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=24.5
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECC
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEID 101 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid 101 (299)
...+|+++|+|+ |+.....+...++.+++.+|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 357899999984 4433333444578899999999
No 383
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.01 E-value=0.84 Score=41.71 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=62.2
Q ss_pred CCeEEEEeccccH--HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhh------hcCCCC-------CCEEEEEccHHH
Q 037807 69 PKKVLLIGGGDGG--ILREISRHASVEQIHICEIDTMLINVYKEYFPEI------AIGYED-------SRVILHVCDGSE 133 (299)
Q Consensus 69 ~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~~-------~rv~v~~~D~~~ 133 (299)
-++|.+||+|.=+ ++..+++.. .+|+++|.+++.++.+.+.+... .+.+.. .++++. .|. +
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 79 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAG--YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-E 79 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-H
Confidence 3679999998544 444455442 47999999999988765533211 011110 223332 332 2
Q ss_pred HHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 134 YLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 134 ~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
-+ ...|+||.-.++... ....+|+.+...++++.+++.++.+
T Consensus 80 ~~-----~~aD~Vieavpe~~~-----~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 80 DL-----ADCDLVIEAATEDET-----VKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred Hh-----cCCCEEEEcCcCCHH-----HHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 22 357999987655311 1256788899999999888866543
No 384
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=90.96 E-value=1 Score=44.76 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=64.5
Q ss_pred CCCeEEEEeccc--cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhh-----h-cCCC-------CCCEEEEEccHH
Q 037807 68 NPKKVLLIGGGD--GGILREISRHASVEQIHICEIDTMLINVYKEYFPEI-----A-IGYE-------DSRVILHVCDGS 132 (299)
Q Consensus 68 ~~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-----~-~~~~-------~~rv~v~~~D~~ 132 (299)
+.++|-+||+|+ .+++..+++.. .+|+++|.+++.++.+++.+... . +.+. -.|++.. .|..
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG--~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 80 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAG--HQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLH 80 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHH
Confidence 456899999984 34555555553 57999999999998776543321 0 0010 0233332 3322
Q ss_pred HHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 133 EYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 133 ~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
.. ...|+||.-.++... ...++|+.+.+.++++.+++.|+.+
T Consensus 81 ----~l--~~aDlVIEav~E~~~-----vK~~vf~~l~~~~~~~~IlasnTSt 122 (503)
T TIGR02279 81 ----AL--ADAGLVIEAIVENLE-----VKKALFAQLEELCPADTIIASNTSS 122 (503)
T ss_pred ----Hh--CCCCEEEEcCcCcHH-----HHHHHHHHHHhhCCCCeEEEECCCC
Confidence 22 257999987665421 1266788888888888888877644
No 385
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=90.85 E-value=0.36 Score=42.37 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=68.5
Q ss_pred hHHHHHHhhcccCCCCCCeEEEEeccccHHHHHH--HhcCCccEEEEEECCHHHHHHHHhhchhhhc-C-----------
Q 037807 53 AYQEMITHLPLCSIPNPKKVLLIGGGDGGILREI--SRHASVEQIHICEIDTMLINVYKEYFPEIAI-G----------- 118 (299)
Q Consensus 53 ~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l--~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~-~----------- 118 (299)
+|++.|.+++ ...|-.+-|-.||+|.++.-+ ++......|.+-|||++++++|++|+..... +
T Consensus 39 i~qR~l~~l~---~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~ 115 (246)
T PF11599_consen 39 IFQRALHYLE---GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELREL 115 (246)
T ss_dssp HHHHHHCTSS---S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhc---CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHH
Confidence 4555555432 246788999999999987654 4555678999999999999999998743200 0
Q ss_pred -------------------------C-CCCCEEEEEccHHHHHH--hc-CCCCccEEEEcCCCCCCCCC-----CCCcHH
Q 037807 119 -------------------------Y-EDSRVILHVCDGSEYLK--TV-QSGTFDAIIIDAFDPIRPGH-----DLFEGP 164 (299)
Q Consensus 119 -------------------------~-~~~rv~v~~~D~~~~l~--~~-~~~~fDvIi~D~~~~~~~~~-----~l~t~e 164 (299)
- ......+...|.++.-. .. ....-|+||.|.+....... .--...
T Consensus 116 ~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ 195 (246)
T PF11599_consen 116 YEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQ 195 (246)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHH
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHH
Confidence 0 12235677777665322 11 13345888888765432111 001256
Q ss_pred HHHHHHHhcCCCcEEEE
Q 037807 165 FFELVAKALRPGGAMCI 181 (299)
Q Consensus 165 f~~~~~~~LkpgGvlv~ 181 (299)
++..+...|-+++++++
T Consensus 196 ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 196 MLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHCCS-TT-EEEE
T ss_pred HHHHHHhhCCCCcEEEE
Confidence 77777888865666666
No 386
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=90.79 E-value=0.15 Score=41.99 Aligned_cols=112 Identities=19% Similarity=0.159 Sum_probs=54.7
Q ss_pred HHhhcccCCCCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHh
Q 037807 58 ITHLPLCSIPNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKT 137 (299)
Q Consensus 58 l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~ 137 (299)
|.+..-....-+.-||++|.|+|.+=-++-...+..+|.+.|-- ++. + +.. -.+.-.++.+|+++-+..
T Consensus 18 L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~---l~~---h-p~~----~P~~~~~ilGdi~~tl~~ 86 (160)
T PF12692_consen 18 LNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA---LAC---H-PSS----TPPEEDLILGDIRETLPA 86 (160)
T ss_dssp HHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS-----S-----GGG-------GGGEEES-HHHHHHH
T ss_pred HHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeee---ccc---C-CCC----CCchHheeeccHHHHhHH
Confidence 34433333334678999999999998888876667889998852 211 1 111 123457899999987765
Q ss_pred c--CCCCccEEEEcCCCCCCCCCCCCcHHH-HHHHHHhcCCCcEEEE
Q 037807 138 V--QSGTFDAIIIDAFDPIRPGHDLFEGPF-FELVAKALRPGGAMCI 181 (299)
Q Consensus 138 ~--~~~~fDvIi~D~~~~~~~~~~l~t~ef-~~~~~~~LkpgGvlv~ 181 (299)
. -..+.-++-.|.-..... ....+... =..+..+|.+||+++.
T Consensus 87 ~~~~g~~a~laHaD~G~g~~~-~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 87 LARFGAGAALAHADIGTGDKE-KDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHH-S-EEEEEE----S-HH-HHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHhcCCceEEEEeecCCCCcc-hhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 2 134445555565332110 00001111 2244678999999986
No 387
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.73 E-value=0.83 Score=40.33 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=23.5
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCH
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDT 102 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 102 (299)
...+|+++|||+ |......+...++.+++.+|-|.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 356899999984 33333333345789999996664
No 388
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.72 E-value=0.9 Score=38.66 Aligned_cols=101 Identities=14% Similarity=0.172 Sum_probs=59.1
Q ss_pred eEEEEeccccHH--HHHHHhcCCccEEEEEECCHHHHHHHHhhchhh-h-----cCCC-------CCCEEEEEccHHHHH
Q 037807 71 KVLLIGGGDGGI--LREISRHASVEQIHICEIDTMLINVYKEYFPEI-A-----IGYE-------DSRVILHVCDGSEYL 135 (299)
Q Consensus 71 ~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-~-----~~~~-------~~rv~v~~~D~~~~l 135 (299)
+|.+||+|.=+. +..++.+ ..+|+.+|.|++.++.+++.+... . +.+. -.++++ ..|.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl---- 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDL---- 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSG----
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCH----
Confidence 588999976443 3333444 368999999999999988876542 0 1111 123442 2332
Q ss_pred HhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 136 KTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 136 ~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
.+. . ..|+||=..+... -...++|+.+.+.+.|+-+|+.|+.+
T Consensus 74 ~~~-~-~adlViEai~E~l-----~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 74 EEA-V-DADLVIEAIPEDL-----ELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp GGG-C-TESEEEE-S-SSH-----HHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred HHH-h-hhheehhhccccH-----HHHHHHHHHHHHHhCCCceEEecCCC
Confidence 222 2 6788885544321 11378999999999999999998744
No 389
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.72 E-value=1.1 Score=42.30 Aligned_cols=35 Identities=34% Similarity=0.493 Sum_probs=24.1
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCH
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDT 102 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 102 (299)
...+||++|+|+ |......+...++.+++.||-|.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 357899999985 33333333344788999999983
No 390
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.68 E-value=1.9 Score=34.80 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=20.9
Q ss_pred eEEEEeccc-cHHHHHHHhcCCccEEEEEECCH
Q 037807 71 KVLLIGGGD-GGILREISRHASVEQIHICEIDT 102 (299)
Q Consensus 71 ~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 102 (299)
+||++|+|+ |......+...++.+++.+|-|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 589999973 33222222345688999999884
No 391
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=90.61 E-value=3.7 Score=39.22 Aligned_cols=107 Identities=11% Similarity=0.121 Sum_probs=60.5
Q ss_pred CCCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEE---ccHHHHHHhc-CCC
Q 037807 67 PNPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHV---CDGSEYLKTV-QSG 141 (299)
Q Consensus 67 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~---~D~~~~l~~~-~~~ 141 (299)
....+||+.|+|. |..+..+++..+...|+++|.+++-.+.+++. .. . .+.. .+..+.+.+. ...
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-Ga--------~-~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-GC--------E-TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-CC--------e-EEecCCcccHHHHHHHHcCCC
Confidence 3467899866643 22334566666666677789999889988874 21 1 1211 1333333332 234
Q ss_pred CccEEEEcCCCCCC--CC-CCC-CcHHHHHHHHHhcCCCcEEEEec
Q 037807 142 TFDAIIIDAFDPIR--PG-HDL-FEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 142 ~fDvIi~D~~~~~~--~~-~~l-~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
.+|+|+--.-.+.. .. ... -....++...+.++++|.+++-.
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 69988843322210 00 000 01236788889999999998743
No 392
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.53 E-value=1.3 Score=41.28 Aligned_cols=98 Identities=21% Similarity=0.275 Sum_probs=53.1
Q ss_pred CeEEEEeccccHHHHHHHh---cCCccEEEEEECCHH-HHHHHHhhchhh---------------hcCCCCCCEEEEEcc
Q 037807 70 KKVLLIGGGDGGILREISR---HASVEQIHICEIDTM-LINVYKEYFPEI---------------AIGYEDSRVILHVCD 130 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~~-vi~~a~~~~~~~---------------~~~~~~~rv~v~~~D 130 (299)
-+||+||+| +++-|++| ..+..++.+||+|-- +..+-|+++-.. ...+..-.|..+.++
T Consensus 41 ~kiLviGAG--GLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~k 118 (422)
T KOG2015|consen 41 CKILVIGAG--GLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQK 118 (422)
T ss_pred CcEEEEccC--cccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeecc
Confidence 579999987 45666665 335568889888853 334444443110 000112234555566
Q ss_pred HHHHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCc
Q 037807 131 GSEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGG 177 (299)
Q Consensus 131 ~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgG 177 (299)
..++-.+. -++||+||+.+..-.. +.++..+.-.|+-.|
T Consensus 119 Iqd~~~~F-Yk~F~~iicGLDsIea-------RRwIN~mL~~l~~~g 157 (422)
T KOG2015|consen 119 IQDKPISF-YKRFDLIICGLDSIEA-------RRWINGMLVRLKLEG 157 (422)
T ss_pred hhcCCHHH-HhhhceEEecccchhH-------HHHHHHHHHHHHhcc
Confidence 54433322 3679999985433211 445555554444445
No 393
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=90.51 E-value=6.3 Score=39.08 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=67.6
Q ss_pred CeEEEEeccccHHHHHHHhcC----CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 70 KKVLLIGGGDGGILREISRHA----SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~~~----~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
..|.+.-||+|+++.+..+.. ....+++-|+.+.+...++.++-.... ..+.+.+..+|...-.......+||+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~--~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI--DYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC--CccccCcccCCcCCCccccccccCCE
Confidence 589999999999998765421 235689999999999999987533211 11223333344322000001357999
Q ss_pred EEEcCCCCC----C--CC----CC------C-----CcHHHHHHHHHhcCCCcEEEE
Q 037807 146 IIIDAFDPI----R--PG----HD------L-----FEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 146 Ii~D~~~~~----~--~~----~~------l-----~t~ef~~~~~~~LkpgGvlv~ 181 (299)
|+.+++... + ++ .. + ...-|+..+..+|++||...+
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAI 353 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEE
Confidence 999875432 1 10 00 0 135688889999999996443
No 394
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.49 E-value=2 Score=41.24 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=46.3
Q ss_pred CeEEEEeccccHHHHHHHh---cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHH--HHhcCCCCcc
Q 037807 70 KKVLLIGGGDGGILREISR---HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEY--LKTVQSGTFD 144 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~--l~~~~~~~fD 144 (299)
++||+|||| .+++.++. ..+..+|++.|.+++-.+.+.... .++++.+.-|+.+. +.+. -+.+|
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~--------~~~v~~~~vD~~d~~al~~l-i~~~d 70 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI--------GGKVEALQVDAADVDALVAL-IKDFD 70 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc--------cccceeEEecccChHHHHHH-HhcCC
Confidence 579999995 44444332 334479999999988777666543 34777777776443 2222 24569
Q ss_pred EEEEcCCC
Q 037807 145 AIIIDAFD 152 (299)
Q Consensus 145 vIi~D~~~ 152 (299)
+||.-.+.
T Consensus 71 ~VIn~~p~ 78 (389)
T COG1748 71 LVINAAPP 78 (389)
T ss_pred EEEEeCCc
Confidence 99975543
No 395
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.48 E-value=0.22 Score=44.62 Aligned_cols=46 Identities=35% Similarity=0.503 Sum_probs=36.0
Q ss_pred CCeEEEEeccccHHHHHHHhcC--------CccEEEEEECCHHHHHHHHhhchh
Q 037807 69 PKKVLLIGGGDGGILREISRHA--------SVEQIHICEIDTMLINVYKEYFPE 114 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~--------~~~~v~~VEid~~vi~~a~~~~~~ 114 (299)
+-+|+++|+|+|.+++-+++.- ...+++.||++|.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 5799999999999999887632 125899999999999999888765
No 396
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.44 E-value=3.3 Score=40.05 Aligned_cols=74 Identities=23% Similarity=0.283 Sum_probs=49.7
Q ss_pred CCCeEEEEeccccHHHHHHHhc--CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHH--HHHHhcCCCCc
Q 037807 68 NPKKVLLIGGGDGGILREISRH--ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGS--EYLKTVQSGTF 143 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~--~~l~~~~~~~f 143 (299)
..++|+++|+|. +++.+++. .....|+++|.|++.++..++.+ +.+.++.+|+. +.+++..-+++
T Consensus 230 ~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 230 PVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEEL---------PNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC---------CCCeEEECCCCCHHHHHhcCCccC
Confidence 367899999864 44444431 11247999999999888776643 24678888884 34544434689
Q ss_pred cEEEEcCCC
Q 037807 144 DAIIIDAFD 152 (299)
Q Consensus 144 DvIi~D~~~ 152 (299)
|.|++-..+
T Consensus 299 ~~vi~~~~~ 307 (453)
T PRK09496 299 DAFIALTND 307 (453)
T ss_pred CEEEECCCC
Confidence 999876554
No 397
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.44 E-value=3.9 Score=38.05 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=60.2
Q ss_pred CCCCeEEEEeccc-cHHHHHHHh-cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCcc
Q 037807 67 PNPKKVLLIGGGD-GGILREISR-HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 67 ~~~~~VL~IG~G~-G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fD 144 (299)
+.+.+|.+||+|. |......+. .+-..++..+|++++.++--..-+.... .+. .++.+..+|-.+ + ...|
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~-~~~-~~~~i~~~~~~~-~-----~~ad 75 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV-PFT-SPTKIYAGDYSD-C-----KDAD 75 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc-ccc-CCeEEEeCCHHH-h-----CCCC
Confidence 4567999999987 554444443 4334589999998876543332222211 122 346666555322 2 4579
Q ss_pred EEEEcCCCCCCCCC---CCC--cHHHHHHHHHhc---CCCcEEEEe
Q 037807 145 AIIIDAFDPIRPGH---DLF--EGPFFELVAKAL---RPGGAMCIQ 182 (299)
Q Consensus 145 vIi~D~~~~~~~~~---~l~--t~ef~~~~~~~L---kpgGvlv~~ 182 (299)
+||+-.-.|..+.. .++ ....++.+...+ .|+|++++-
T Consensus 76 ivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivv 121 (315)
T PRK00066 76 LVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVA 121 (315)
T ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 99996655544321 111 234455544433 478887653
No 398
>PRK08328 hypothetical protein; Provisional
Probab=90.43 E-value=1 Score=40.01 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=25.1
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCH
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDT 102 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 102 (299)
...+||++|||+ |......+...++.+++.||-|.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 357899999984 44444444455789999998764
No 399
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=90.32 E-value=1.5 Score=39.21 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=30.3
Q ss_pred CCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHH
Q 037807 69 PKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLI 105 (299)
Q Consensus 69 ~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi 105 (299)
..+|+++|.|+ |+.+.+.+.+.++.+++.||.|.--+
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~v 67 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCV 67 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccc
Confidence 56799999764 88888888888899999999986543
No 400
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.15 E-value=0.8 Score=43.66 Aligned_cols=34 Identities=32% Similarity=0.390 Sum_probs=24.8
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECC
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEID 101 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid 101 (299)
...+||++|+|+ |......+...++.+++.||-|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467899999984 4434444445578999999998
No 401
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.07 E-value=1.4 Score=36.69 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=43.9
Q ss_pred HHHhhcccCCCCCCeEEEEeccccHH--HHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHH
Q 037807 57 MITHLPLCSIPNPKKVLLIGGGDGGI--LREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEY 134 (299)
Q Consensus 57 ~l~~~~l~~~~~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~ 134 (299)
||.++|++..-+.++||++|+|.=+. ++.+++.. .+|++| +|+..+..++ + +.+++.... |
T Consensus 1 ~~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~g--a~V~VI--sp~~~~~l~~-l---------~~i~~~~~~---~ 63 (157)
T PRK06719 1 MYNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDTG--AFVTVV--SPEICKEMKE-L---------PYITWKQKT---F 63 (157)
T ss_pred CCcccceEEEcCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEE--cCccCHHHHh-c---------cCcEEEecc---c
Confidence 45567776666789999999986444 33344543 578888 4544433332 1 133443222 2
Q ss_pred HHhcCCCCccEEEEcCCC
Q 037807 135 LKTVQSGTFDAIIIDAFD 152 (299)
Q Consensus 135 l~~~~~~~fDvIi~D~~~ 152 (299)
-... -..+|+|+.-..+
T Consensus 64 ~~~d-l~~a~lViaaT~d 80 (157)
T PRK06719 64 SNDD-IKDAHLIYAATNQ 80 (157)
T ss_pred Chhc-CCCceEEEECCCC
Confidence 2211 3568999875444
No 402
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=90.02 E-value=3.5 Score=37.60 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=59.3
Q ss_pred CCCeEEEEec--cccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 68 NPKKVLLIGG--GDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
...+||+.|+ +.|..+.++++..+. +|+++.-++.-.+.+++.+.. +.-+.....+..+-+.+...+.+|+
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~v~~~~~~~~d~ 217 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEELGF------DAAINYKTPDLAEALKEAAPDGIDV 217 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhhcCC------ceEEecCChhHHHHHHHhccCCceE
Confidence 4578999984 455566677776554 789999888888877764431 1111111123333233221356998
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
|+ |... ....+.+.+.|+++|.++..
T Consensus 218 vi-~~~g----------~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 218 YF-DNVG----------GEILDAALTLLNKGGRIALC 243 (329)
T ss_pred EE-Ecch----------HHHHHHHHHhcCCCceEEEE
Confidence 88 3221 23567788899999998864
No 403
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.95 E-value=0.94 Score=42.10 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=71.0
Q ss_pred EEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCC
Q 037807 72 VLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAF 151 (299)
Q Consensus 72 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~ 151 (299)
|+++-||.|++..-+.+. +..-+.++|+|+..++..+.+++. .++.+|..+..... -...|+|+..++
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~~----------~~~~~Di~~~~~~~-~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFGN----------KVPFGDITKISPSD-IPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCCC----------CCCccChhhhhhhh-CCCcCEEEecCC
Confidence 588999999998877654 456677899999999999988752 44567877654322 246899998654
Q ss_pred CCC----CCC-------CCCCcHHHHHHHHHhcCCCcEEEEecCCccc--chHHHHHHHHHHhh
Q 037807 152 DPI----RPG-------HDLFEGPFFELVAKALRPGGAMCIQAESLWF--QQFSVQHLIDDCHR 202 (299)
Q Consensus 152 ~~~----~~~-------~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~--~~~~~~~~~~~l~~ 202 (299)
... +.. ..|+ .++++. .+.++|.=+++=|...... ....+..+++.+++
T Consensus 69 Cq~fS~ag~~~~~~d~r~~L~-~~~~r~-i~~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~ 130 (315)
T TIGR00675 69 CQPFSIAGKRKGFEDTRGTLF-FEIVRI-LKEKKPKFFLLENVKGLVSHDKGRTFKVIIETLEE 130 (315)
T ss_pred CcccchhcccCCCCCchhhHH-HHHHHH-HhhcCCCEEEeeccHHHHhcccchHHHHHHHHHHh
Confidence 321 111 1121 334443 3457887555544422111 12356666666654
No 404
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=89.92 E-value=0.6 Score=45.79 Aligned_cols=104 Identities=20% Similarity=0.278 Sum_probs=59.3
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
..-++|+|..+|.|+++..|.+.+ |.+.-.-|. .....++-. + +-.+-=+.-|..+-+... +.+||+|
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~---~~~ntL~vI---y-dRGLIG~yhDWCE~fsTY-PRTYDLl 431 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPV---SGPNTLPVI---Y-DRGLIGVYHDWCEAFSTY-PRTYDLL 431 (506)
T ss_pred cceeeeeeecccccHHHHHhccCC----ceEEEeccc---CCCCcchhh---h-hcccchhccchhhccCCC-Ccchhhe
Confidence 356889999999999999998765 222222111 011111111 1 111111223444444444 6899999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
-.+.--.... ...--...+-++-|+|+|+|.+++.-
T Consensus 432 HA~~lfs~~~-~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 432 HADGLFSLYK-DRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred ehhhhhhhhc-ccccHHHHHHHhHhhcCCCceEEEec
Confidence 8753221111 11223677889999999999999854
No 405
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=89.88 E-value=3.2 Score=38.14 Aligned_cols=98 Identities=16% Similarity=0.239 Sum_probs=60.9
Q ss_pred CCCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCcc
Q 037807 67 PNPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTFD 144 (299)
Q Consensus 67 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~fD 144 (299)
.+..+||+.|+|. |..+..+++..+ .+|+++.-+++..+.++++- . +.-+.....+..+.+.+. +.+.+|
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g-~~v~~~~~s~~~~~~~~~~g-~------~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARG-ARVIVVDIDDERLEFARELG-A------DDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHhC-C------CEEecCcccCHHHHHHHHhCCCCCC
Confidence 3567999997654 556666777655 46888888888888776531 1 111222222333333322 235699
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+|+..... .+....+.+.|+++|.++.-
T Consensus 230 ~vld~~g~----------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 230 VVIDATGN----------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred EEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence 99854211 45678889999999998853
No 406
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=89.88 E-value=1 Score=40.22 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=25.5
Q ss_pred CCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHH
Q 037807 69 PKKVLLIGGGD-GGILREISRHASVEQIHICEIDTM 103 (299)
Q Consensus 69 ~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~ 103 (299)
..+||++|+|+ |......+...++.+++.+|-|.-
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 56899999874 554444455557899999988754
No 407
>PRK10083 putative oxidoreductase; Provisional
Probab=89.79 E-value=3.3 Score=38.07 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=55.9
Q ss_pred CCCeEEEEeccc-cHHHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 68 NPKKVLLIGGGD-GGILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
...+||+.|+|. |..+.++++. .+...+.+++.+++-.++++++-. +.-+.....+..+.+... ...+|+
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga-------~~~i~~~~~~~~~~~~~~-g~~~d~ 231 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGA-------DWVINNAQEPLGEALEEK-GIKPTL 231 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCC-------cEEecCccccHHHHHhcC-CCCCCE
Confidence 467899998542 1223334553 366678899999999888887421 111111112333334321 223456
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
|+ |.... ...+....+.|+++|.++.-
T Consensus 232 vi-d~~g~---------~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 232 II-DAACH---------PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred EE-ECCCC---------HHHHHHHHHHhhcCCEEEEE
Confidence 55 33221 34577888999999999864
No 408
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=89.73 E-value=3.6 Score=38.66 Aligned_cols=92 Identities=20% Similarity=0.245 Sum_probs=50.7
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHH-HHHHhhchhhhcCCCCCCEEEEE-ccHHHHHHhcCCCCcc
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLI-NVYKEYFPEIAIGYEDSRVILHV-CDGSEYLKTVQSGTFD 144 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi-~~a~~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~fD 144 (299)
...+||+.|+|. |..+..+++..+. +|++++.+++-. +.+++ +.. + .++. .+. +-+.+. .+.+|
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~-~Ga------~---~vi~~~~~-~~~~~~-~~~~D 249 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINR-LGA------D---SFLVSTDP-EKMKAA-IGTMD 249 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHh-CCC------c---EEEcCCCH-HHHHhh-cCCCC
Confidence 457899987643 3344556666554 577787776543 33333 221 0 1111 111 122222 23589
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+|+ |.... ...++.+.+.|+++|.++.-
T Consensus 250 ~vi-d~~g~---------~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 250 YII-DTVSA---------VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred EEE-ECCCC---------HHHHHHHHHHhcCCcEEEEe
Confidence 888 43221 34577788999999998864
No 409
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=89.68 E-value=2.8 Score=38.89 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=55.4
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
...+||+.|+|. |..+.++++..+. +|++++.+++-.+.+++.=. + .++..+ + ...+.+|++
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga-------~---~vi~~~--~----~~~~~~d~~ 227 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGA-------A---SAGGAY--D----TPPEPLDAA 227 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCC-------c---eecccc--c----cCcccceEE
Confidence 467999999643 3345566776554 68999999998888887421 1 011000 0 012458876
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+..... .+.+....+.|+++|.+++-
T Consensus 228 i~~~~~----------~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 228 ILFAPA----------GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred EECCCc----------HHHHHHHHHhhCCCcEEEEE
Confidence 643221 23577888999999999864
No 410
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.59 E-value=9.2 Score=35.44 Aligned_cols=105 Identities=16% Similarity=0.240 Sum_probs=57.3
Q ss_pred eEEEEeccc-cHHHHH-HHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCC-CCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 71 KVLLIGGGD-GGILRE-ISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYED-SRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 71 ~VL~IG~G~-G~~~~~-l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~-~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+|-+||+|. |..... ++...-..++..+|++++..+--..-+... ..+.. .++++..+|-.+ . ..-|+||
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~-~~~~~~~~~~i~~~~y~~----~--~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHA-TALTYSTNTKIRAGDYDD----C--ADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhh-hccCCCCCEEEEECCHHH----h--CCCCEEE
Confidence 478899986 555433 344444578999999876543222212211 12222 357777777322 2 4579999
Q ss_pred EcCCCCCCCCC-----CCC--cHHHHHHHHHhc---CCCcEEEEe
Q 037807 148 IDAFDPIRPGH-----DLF--EGPFFELVAKAL---RPGGAMCIQ 182 (299)
Q Consensus 148 ~D~~~~~~~~~-----~l~--t~ef~~~~~~~L---kpgGvlv~~ 182 (299)
+-.-.|..|.. .|+ ..+.++.+...+ .|+|++++-
T Consensus 74 itaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivv 118 (307)
T cd05290 74 ITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILI 118 (307)
T ss_pred ECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 97665544322 111 234455554433 478887763
No 411
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=89.52 E-value=3.3 Score=38.37 Aligned_cols=98 Identities=21% Similarity=0.279 Sum_probs=57.4
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+..+||+.|+|. |..+..+++..+.+.|++++.+++-.+.++++ .. +.-+.....+..+-+.+...+.+|+|
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~d~v 247 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA-GA------DVVVNGSDPDAAKRIIKAAGGGVDAV 247 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC------cEEecCCCccHHHHHHHHhCCCCcEE
Confidence 457899986542 33444566666666889999998888877653 21 00000011122222332213379999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+ |.... ......+.+.|+++|.++..
T Consensus 248 i-d~~g~---------~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 248 I-DFVNN---------SATASLAFDILAKGGKLVLV 273 (350)
T ss_pred E-ECCCC---------HHHHHHHHHHhhcCCeEEEE
Confidence 8 32211 34577889999999999864
No 412
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=89.51 E-value=1.8 Score=41.98 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=25.9
Q ss_pred CCeEEEEeccccHHHHHHHh---cCCccEEEEEECCH
Q 037807 69 PKKVLLIGGGDGGILREISR---HASVEQIHICEIDT 102 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~ 102 (299)
..+||+||+| +++.|++| .+++.+++.||-+.
T Consensus 20 ~s~VlliG~g--glGsEilKNLvL~GIg~~tIvD~~~ 54 (425)
T cd01493 20 SAHVCLLNAT--ATGTEILKNLVLPGIGSFTIVDGSK 54 (425)
T ss_pred hCeEEEEcCc--HHHHHHHHHHHHcCCCeEEEECCCc
Confidence 5689999887 47788776 57899999998763
No 413
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=89.51 E-value=9.5 Score=32.12 Aligned_cols=106 Identities=19% Similarity=0.209 Sum_probs=61.3
Q ss_pred CCCeEEEEeccccHHHHHHHh---cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCcc
Q 037807 68 NPKKVLLIGGGDGGILREISR---HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fD 144 (299)
..++|.+||+| .+++++++ -.+ .+|.++|.++......... .+ ...+..+.+++ .|
T Consensus 35 ~g~tvgIiG~G--~IG~~vA~~l~~fG-~~V~~~d~~~~~~~~~~~~-----------~~--~~~~l~ell~~-----aD 93 (178)
T PF02826_consen 35 RGKTVGIIGYG--RIGRAVARRLKAFG-MRVIGYDRSPKPEEGADEF-----------GV--EYVSLDELLAQ-----AD 93 (178)
T ss_dssp TTSEEEEESTS--HHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHT-----------TE--EESSHHHHHHH------S
T ss_pred CCCEEEEEEEc--CCcCeEeeeeecCC-ceeEEecccCChhhhcccc-----------cc--eeeehhhhcch-----hh
Confidence 47899999987 45555554 444 5899999998866522211 22 23356666653 69
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhh
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHR 202 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~ 202 (299)
+|++..+... ...+++..++|+ .||+|.+|+--+-....+. ..+++.+++
T Consensus 94 iv~~~~plt~-~T~~li~~~~l~----~mk~ga~lvN~aRG~~vde---~aL~~aL~~ 143 (178)
T PF02826_consen 94 IVSLHLPLTP-ETRGLINAEFLA----KMKPGAVLVNVARGELVDE---DALLDALES 143 (178)
T ss_dssp EEEE-SSSST-TTTTSBSHHHHH----TSTTTEEEEESSSGGGB-H---HHHHHHHHT
T ss_pred hhhhhhcccc-ccceeeeeeeee----ccccceEEEeccchhhhhh---hHHHHHHhh
Confidence 9999876421 234577777666 5777666654222222222 356666665
No 414
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.50 E-value=11 Score=36.36 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=66.0
Q ss_pred CeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHh---------c-C
Q 037807 70 KKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKT---------V-Q 139 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~---------~-~ 139 (299)
.+|-++|.|==++...+.-.....+|+++|||+..++...+- +..+..-+..+.+++ + .
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G-----------~~~i~e~~~~~~v~~~v~~g~lraTtd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRG-----------ESYIEEPDLDEVVKEAVESGKLRATTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCC-----------cceeecCcHHHHHHHHHhcCCceEecC
Confidence 678899988655554443211235799999999999876542 111111121111110 0 0
Q ss_pred ---CCCccEEEEcCCCCCCC---CCCCCcHHHHHHHHHhcCCCcEEEEecCCcccchH
Q 037807 140 ---SGTFDAIIIDAFDPIRP---GHDLFEGPFFELVAKALRPGGAMCIQAESLWFQQF 191 (299)
Q Consensus 140 ---~~~fDvIi~D~~~~~~~---~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~ 191 (299)
-...|++|+..+.|... +.--|-...-+.+...|++|-++++.+.++-...+
T Consensus 79 ~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe 136 (436)
T COG0677 79 PEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTE 136 (436)
T ss_pred hhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHH
Confidence 12689999877776532 11112355567788999999999998766544443
No 415
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=89.49 E-value=3.6 Score=38.52 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=57.5
Q ss_pred CCCeEEEEecc-ccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHh-cCCCCccE
Q 037807 68 NPKKVLLIGGG-DGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKT-VQSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~~fDv 145 (299)
+..+||+.|+| .|..+.++++..+...+++++-+++..+.+++. .. +.-+.....+..+-+.+ .....+|+
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~-g~------~~v~~~~~~~~~~~l~~~~~~~~~d~ 259 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL-GA------THTVNAAKEDAVAAIREITGGRGVDV 259 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC------ceEecCCcccHHHHHHHHhCCCCCCE
Confidence 45789988653 233444556665666689999998888777542 21 11111111232222222 22456999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+-- ... .+..+.+.+.|+++|.++.-.
T Consensus 260 vld~-vg~---------~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 260 VVEA-LGK---------PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEe-CCC---------HHHHHHHHHHHhcCCEEEEEc
Confidence 9832 221 235677889999999988643
No 416
>PTZ00117 malate dehydrogenase; Provisional
Probab=89.49 E-value=5.5 Score=37.08 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=57.2
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhh-chhhhcCCCCCCEEEEE-ccHHHHHHhcCCCCcc
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEY-FPEIAIGYEDSRVILHV-CDGSEYLKTVQSGTFD 144 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~fD 144 (299)
+..+|.+||+|. |.....++...+...+..+|++++..+ +... +... ........++.. .|-. -+ ..-|
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~-~~~~~~~~~i~~~~d~~-~l-----~~AD 75 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHF-STLVGSNINILGTNNYE-DI-----KDSD 75 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhh-ccccCCCeEEEeCCCHH-Hh-----CCCC
Confidence 456899999998 776666555444457999999987654 2221 1111 111223345554 4533 22 3359
Q ss_pred EEEEcCCCCCCCCC---CC------CcHHHHHHHHHhcCCCcEEEE
Q 037807 145 AIIIDAFDPIRPGH---DL------FEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 145 vIi~D~~~~~~~~~---~l------~t~ef~~~~~~~LkpgGvlv~ 181 (299)
+|++-.-.+..+.. .+ .-.++.+.+.+. .|++++++
T Consensus 76 iVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~viv 120 (319)
T PTZ00117 76 VVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVIC 120 (319)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEE
Confidence 99986543332210 00 013455555554 68886554
No 417
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.45 E-value=0.7 Score=44.18 Aligned_cols=59 Identities=25% Similarity=0.465 Sum_probs=46.5
Q ss_pred CCEEEEEccHHHHHHhcCCCCccEEEE-cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 122 SRVILHVCDGSEYLKTVQSGTFDAIII-DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 122 ~rv~v~~~D~~~~l~~~~~~~fDvIi~-D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
.+++++.++..+++++.+++++|..++ |..|--.+.. ..+.++.+.+.++|||.++.-+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~---~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQ---LNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHH---HHHHHHHHHHHhCCCCEEEEee
Confidence 699999999999999877899998765 6655322211 2667899999999999999854
No 418
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=89.35 E-value=9.6 Score=35.13 Aligned_cols=106 Identities=19% Similarity=0.304 Sum_probs=55.3
Q ss_pred CeEEEEeccc-cHHHHHHHhcCCc-cEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 70 KKVLLIGGGD-GGILREISRHASV-EQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 70 ~~VL~IG~G~-G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
++|.+||+|. |......+...+. .+++.+|++++..+....-+.... .+......+...|..+ . ...|+||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~~----l--~~aDIVI 73 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYSD----C--KDADIVV 73 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHHH----h--CCCCEEE
Confidence 3799999875 3333232333233 489999999887654433332211 1112334555555322 1 4689999
Q ss_pred EcCCCCCCCCC---CCC--cHHHHHHHHHh---cCCCcEEEEe
Q 037807 148 IDAFDPIRPGH---DLF--EGPFFELVAKA---LRPGGAMCIQ 182 (299)
Q Consensus 148 ~D~~~~~~~~~---~l~--t~ef~~~~~~~---LkpgGvlv~~ 182 (299)
+-...|..+.. .|+ +.+.++.+.+. -.|+|++++-
T Consensus 74 itag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivv 116 (306)
T cd05291 74 ITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVA 116 (306)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 97655544321 111 12334444332 5678876653
No 419
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=89.33 E-value=2.4 Score=38.13 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=56.2
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCC--CEEEEEccH---HHHHHhcCCCC
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDS--RVILHVCDG---SEYLKTVQSGT 142 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~--rv~v~~~D~---~~~l~~~~~~~ 142 (299)
++.+||++|+|+|..+..++.+. ..+|+.-|+-.. ++..+.+........+.. .+.+..-+. ..... . ...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~-~-~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSF-R-LPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhh-c-cCC
Confidence 56789999999998888777765 356777776444 443333322211111111 233332222 12111 1 223
Q ss_pred -ccEEEE-cCC-CCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 143 -FDAIII-DAF-DPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 143 -fDvIi~-D~~-~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
+|+|+. |.. ++..+ ......++..|..+|++.+
T Consensus 162 ~~DlilasDvvy~~~~~------e~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 162 PFDLILASDVVYEEESF------EGLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred cccEEEEeeeeecCCcc------hhHHHHHHHHHhcCCeEEE
Confidence 999997 433 22221 3456667778888884443
No 420
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=88.99 E-value=1.7 Score=40.06 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=44.9
Q ss_pred EEEEeccccHHHHHHHhc---CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEE----EEccHHHH--HHhc-CCC
Q 037807 72 VLLIGGGDGGILREISRH---ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVIL----HVCDGSEY--LKTV-QSG 141 (299)
Q Consensus 72 VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v----~~~D~~~~--l~~~-~~~ 141 (299)
||+-| |+|.++.++.++ .+..+++++|.|+.-+-..++.+... +.++++++ +.+|.++. +.+. ...
T Consensus 1 VLVTG-a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~---~~~~~v~~~~~~vigDvrd~~~l~~~~~~~ 76 (293)
T PF02719_consen 1 VLVTG-AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSR---FPDPKVRFEIVPVIGDVRDKERLNRIFEEY 76 (293)
T ss_dssp EEEET-TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHH---C--TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred CEEEc-cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhc---ccccCcccccCceeecccCHHHHHHHHhhc
Confidence 56776 458998887762 23478999999999888888777432 12345544 58888654 2222 235
Q ss_pred CccEEEEcCC
Q 037807 142 TFDAIIIDAF 151 (299)
Q Consensus 142 ~fDvIi~D~~ 151 (299)
+.|+|+.-+.
T Consensus 77 ~pdiVfHaAA 86 (293)
T PF02719_consen 77 KPDIVFHAAA 86 (293)
T ss_dssp T-SEEEE---
T ss_pred CCCEEEEChh
Confidence 8999998554
No 421
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=88.94 E-value=5.2 Score=36.93 Aligned_cols=100 Identities=20% Similarity=0.210 Sum_probs=56.9
Q ss_pred CCCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.+..+||+.|+|. |..+..+++..+...|.+++-+++-.+.++++ .. +.-+.....+.....+....+.+|+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~vd~ 234 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM-GA------DVVINPREEDVVEVKSVTDGTGVDV 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-Cc------ceeeCcccccHHHHHHHcCCCCCCE
Confidence 3467888866533 33445566665554677777777777766653 21 1111111223321122222457999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+-.... ......+.+.|+++|.++...
T Consensus 235 vld~~g~----------~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 235 VLEMSGN----------PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EEECCCC----------HHHHHHHHHHhccCCEEEEEc
Confidence 9854321 345677889999999998643
No 422
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=88.89 E-value=5.7 Score=37.09 Aligned_cols=78 Identities=13% Similarity=0.137 Sum_probs=48.8
Q ss_pred cCCCCCCeEEEEeccccHHH--HHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCC
Q 037807 64 CSIPNPKKVLLIGGGDGGIL--REISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSG 141 (299)
Q Consensus 64 ~~~~~~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~ 141 (299)
+..++++++.+||+|.=+-. +.+....+..+|.+.+.+++-.+...+.+... ..++.. ..|..+.++
T Consensus 123 La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~-----g~~v~~-~~~~~eav~----- 191 (325)
T TIGR02371 123 LARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY-----EVPVRA-ATDPREAVE----- 191 (325)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh-----CCcEEE-eCCHHHHhc-----
Confidence 34567899999988853322 22334456789999999999877665554422 122333 456555543
Q ss_pred CccEEEEcCCC
Q 037807 142 TFDAIIIDAFD 152 (299)
Q Consensus 142 ~fDvIi~D~~~ 152 (299)
.-|+|++-.+.
T Consensus 192 ~aDiVitaT~s 202 (325)
T TIGR02371 192 GCDILVTTTPS 202 (325)
T ss_pred cCCEEEEecCC
Confidence 46999985543
No 423
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.88 E-value=3.5 Score=39.94 Aligned_cols=87 Identities=14% Similarity=0.109 Sum_probs=54.5
Q ss_pred CCCeEEEEeccccHH-HHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGDGGI-LREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
..++|+++|+|.=+. ....++..+. +|+++|+|+.-.+.|++. . ++.. +..+.+ ...|+|
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~-G----------~~~~--~~~e~v-----~~aDVV 261 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME-G----------YEVM--TMEEAV-----KEGDIF 261 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc-C----------CEEc--cHHHHH-----cCCCEE
Confidence 468999999997443 3334555555 799999999888877763 1 1111 112222 347999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHH-HHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFEL-VAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~-~~~~LkpgGvlv~~~ 183 (299)
+.-... ...+.. ..+.+++||+++.-.
T Consensus 262 I~atG~----------~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 262 VTTTGN----------KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EECCCC----------HHHHHHHHHhcCCCCcEEEEeC
Confidence 853211 344554 478899999887543
No 424
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=88.53 E-value=19 Score=34.87 Aligned_cols=87 Identities=14% Similarity=0.014 Sum_probs=50.7
Q ss_pred CCCeEEEEeccccHHHH-HHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGDGGILR-EISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~-~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
..++|+++|+|.=+... ..++..+ .+|+++|.||.-...++.. ..++. +..+.+ ...|+|
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~G-a~ViV~d~dp~r~~~A~~~-----------G~~v~--~leeal-----~~aDVV 254 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMG-ARVIVTEVDPIRALEAAMD-----------GFRVM--TMEEAA-----KIGDIF 254 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCc-CEEEEEeCChhhHHHHHhc-----------CCEeC--CHHHHH-----hcCCEE
Confidence 46799999999744333 3345444 4799999999654433321 11221 222322 346998
Q ss_pred EEcCCCCCCCCCCCCcHHHHHH-HHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFEL-VAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~-~~~~LkpgGvlv~~~ 183 (299)
|.-.. +...+.. ....+++|++++.-.
T Consensus 255 ItaTG----------~~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 255 ITATG----------NKDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred EECCC----------CHHHHHHHHHhcCCCCcEEEEEC
Confidence 75321 1444543 667889888777543
No 425
>PRK13699 putative methylase; Provisional
Probab=88.45 E-value=1.1 Score=39.74 Aligned_cols=47 Identities=11% Similarity=-0.031 Sum_probs=40.0
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhh
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEI 115 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~ 115 (299)
.+...|||--+|+|.++....+.. .+..++|++++..+.+++.+...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHHHH
Confidence 456789999999999999888764 57899999999999999887654
No 426
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=88.42 E-value=1.9 Score=44.77 Aligned_cols=103 Identities=11% Similarity=0.136 Sum_probs=64.9
Q ss_pred CCeEEEEeccc--cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhh------cCCC-------CCCEEEEEccHHH
Q 037807 69 PKKVLLIGGGD--GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIA------IGYE-------DSRVILHVCDGSE 133 (299)
Q Consensus 69 ~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~------~~~~-------~~rv~v~~~D~~~ 133 (299)
-++|-+||+|+ ++++..++.. + -+|+.+|.+++.++.+++.....- +.+. -.+++.. .|. +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~-G-~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 388 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK-G-TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY-A 388 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-H
Confidence 46899999995 3445555555 3 579999999999988776654320 0010 0133322 121 1
Q ss_pred HHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 134 YLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 134 ~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
- -...|+||=-.+.... ...++|+.+-+.++|+.+|.+|+.+
T Consensus 389 ~-----~~~aDlViEav~E~l~-----~K~~vf~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 389 G-----FDNVDIVVEAVVENPK-----VKAAVLAEVEQHVREDAILASNTST 430 (714)
T ss_pred H-----hcCCCEEEEcCcccHH-----HHHHHHHHHHhhCCCCcEEEECCCC
Confidence 1 1457888854443211 2378999999999999999998744
No 427
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.42 E-value=7.9 Score=36.09 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=43.1
Q ss_pred CCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhh-cCCCCCCEEEEE-ccHHHHHHhcCCCCccE
Q 037807 69 PKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIA-IGYEDSRVILHV-CDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 69 ~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-~~~~~~rv~v~~-~D~~~~l~~~~~~~fDv 145 (299)
..+|.+||+|. |.....++...+...++.+|++++..+ ++ .+...+ ..+.....++.. +|.. .. ...|+
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~-~~-~ld~~~~~~~~~~~~~I~~~~d~~----~l--~~aDi 77 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQ-GK-ALDISHSNVIAGSNSKVIGTNNYE----DI--AGSDV 77 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhh-HH-HHHHHhhhhccCCCeEEEECCCHH----Hh--CCCCE
Confidence 46899999988 444444444445456999999998642 11 111111 111233456664 6632 22 34699
Q ss_pred EEEcCCCC
Q 037807 146 IIIDAFDP 153 (299)
Q Consensus 146 Ii~D~~~~ 153 (299)
||.-...+
T Consensus 78 VI~tag~~ 85 (321)
T PTZ00082 78 VIVTAGLT 85 (321)
T ss_pred EEECCCCC
Confidence 99855443
No 428
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=88.27 E-value=6 Score=36.48 Aligned_cols=100 Identities=15% Similarity=0.151 Sum_probs=58.5
Q ss_pred CCCCeEEEEecc-ccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCcc
Q 037807 67 PNPKKVLLIGGG-DGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTFD 144 (299)
Q Consensus 67 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~fD 144 (299)
.+..+||+.|+| .|..+..+++..+...|++++-++.-.+.+++.-. +.-+.....+..+-+.+. ..+.+|
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-------~~~v~~~~~~~~~~l~~~~~~~~~d 232 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGA-------TYVVNPFKEDVVKEVADLTDGEGVD 232 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-------cEEEcccccCHHHHHHHhcCCCCCC
Confidence 356788886543 23344455666555558888888877777765311 111122223444434332 235699
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+|+-.... .+....+.+.|+++|.++.-.
T Consensus 233 ~vld~~g~----------~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 233 VFLEMSGA----------PKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EEEECCCC----------HHHHHHHHHhhcCCCEEEEEc
Confidence 99853221 345778899999999987643
No 429
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=88.10 E-value=5.6 Score=37.64 Aligned_cols=100 Identities=18% Similarity=0.161 Sum_probs=57.2
Q ss_pred CCCCeEEEEeccccH-HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEE---ccHHHHHHhc-CCC
Q 037807 67 PNPKKVLLIGGGDGG-ILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHV---CDGSEYLKTV-QSG 141 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~---~D~~~~l~~~-~~~ 141 (299)
....+||+.|+|.=+ .+..+++..+...|++++.+++-.+++++. .. +.-+.... .+..+-+.+. ..+
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM-GA------DYVFNPTKMRDCLSGEKVMEVTKGW 274 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CC------CEEEcccccccccHHHHHHHhcCCC
Confidence 345789998654322 233455665655799999988877777763 21 10111110 1232323322 235
Q ss_pred CccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 142 TFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 142 ~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
.+|+|+ |.... ....+..+.+.|+++|.++.-
T Consensus 275 gvDvvl-d~~g~--------~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 275 GADIQV-EAAGA--------PPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCEEE-ECCCC--------cHHHHHHHHHHHHcCCEEEEE
Confidence 699888 43221 134577788999999999864
No 430
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=88.02 E-value=3.4 Score=36.95 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=24.5
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCH
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDT 102 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 102 (299)
...+||++|+|+ |......+...++.+++.||-|.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 467999999973 44333344455789999998774
No 431
>PRK06223 malate dehydrogenase; Reviewed
Probab=87.95 E-value=6.1 Score=36.29 Aligned_cols=105 Identities=20% Similarity=0.232 Sum_probs=54.1
Q ss_pred CeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEE-ccHHHHHHhcCCCCccEEE
Q 037807 70 KKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHV-CDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 70 ~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~fDvIi 147 (299)
.+|-+||+|. |......+...+..+|..+|++++..+....-+... ........++.. .|..+ + ..-|+||
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~-~~~~~~~~~i~~~~d~~~-~-----~~aDiVi 75 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEA-APVEGFDTKITGTNDYED-I-----AGSDVVV 75 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhh-hhhcCCCcEEEeCCCHHH-H-----CCCCEEE
Confidence 4899999988 665555444333228999999988654221111111 011112234443 44322 2 3469999
Q ss_pred EcCCCCCCCCCC---C--C----cHHHHHHHHHhcCCCcEEEEe
Q 037807 148 IDAFDPIRPGHD---L--F----EGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 148 ~D~~~~~~~~~~---l--~----t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+....|..+... + . -.++.+.+.+.. |++++++-
T Consensus 76 i~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~ 118 (307)
T PRK06223 76 ITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVV 118 (307)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 866544433211 0 1 134455555544 67866653
No 432
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.92 E-value=5.1 Score=34.71 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=23.4
Q ss_pred CCCeEEEEeccccH-HHHHHHhcCCccEEEEEECC
Q 037807 68 NPKKVLLIGGGDGG-ILREISRHASVEQIHICEID 101 (299)
Q Consensus 68 ~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid 101 (299)
...+|+++|+|.-+ .....+.+.++.+++.+|.|
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35789999998533 22223334478899999999
No 433
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=87.87 E-value=2 Score=46.26 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=31.9
Q ss_pred chhhHHHHHHhhcccCC--CCCCeEEEEeccccHHHHHHHh---cCCccEEEEEECCH
Q 037807 50 DECAYQEMITHLPLCSI--PNPKKVLLIGGGDGGILREISR---HASVEQIHICEIDT 102 (299)
Q Consensus 50 de~~Y~e~l~~~~l~~~--~~~~~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~ 102 (299)
|+..|.+.+.-+..-.. -...+||++|+| +++.++++ ..++.+++.+|-|.
T Consensus 3 d~~lYsRQi~l~G~eaq~kL~~s~VLIiG~g--GLG~EiaKnL~laGVg~iti~D~d~ 58 (1008)
T TIGR01408 3 DEALYSRQLYVLGDEAMQKMAKSNVLISGMG--GLGLEIAKNLVLAGVKSVTLHDTEK 58 (1008)
T ss_pred hHhhhhhHHHhcCHHHHHHHhhCcEEEECCC--HHHHHHHHHHHHcCCCeEEEEeCCe
Confidence 45566665432221110 135789999997 46666655 45789999999774
No 434
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=87.80 E-value=5.1 Score=35.55 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=57.4
Q ss_pred CCCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
.+..+||+.|+|. |..+..+++..+..+|++++.+++..+.+++.- .. + .+ .... .... ....+|+
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g-~~-----~-~~--~~~~-~~~~---~~~~~d~ 162 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALG-PA-----D-PV--AADT-ADEI---GGRGADV 162 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcC-CC-----c-cc--cccc-hhhh---cCCCCCE
Confidence 3567899997654 445555666655545899999998888777642 00 1 00 0000 0111 1456998
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+..... ........+.|+++|.++.-.
T Consensus 163 vl~~~~~----------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 163 VIEASGS----------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEccCC----------hHHHHHHHHHhcCCcEEEEEe
Confidence 8843221 335677888999999988643
No 435
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=87.73 E-value=0.22 Score=45.31 Aligned_cols=98 Identities=21% Similarity=0.149 Sum_probs=66.2
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEE
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIII 148 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~ 148 (299)
..-+|++|||.|.... ..| ...+.+.|++...+..|++-- ...+..+|+...... +..||.++.
T Consensus 46 gsv~~d~gCGngky~~---~~p-~~~~ig~D~c~~l~~~ak~~~----------~~~~~~ad~l~~p~~--~~s~d~~ls 109 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG---VNP-LCLIIGCDLCTGLLGGAKRSG----------GDNVCRADALKLPFR--EESFDAALS 109 (293)
T ss_pred cceeeecccCCcccCc---CCC-cceeeecchhhhhccccccCC----------CceeehhhhhcCCCC--CCccccchh
Confidence 4568999999986443 233 346899999999988887631 116677787765442 578999886
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 149 DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 149 D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
-+.-+.- +...-....++.+.+.|+|||-..+.+
T Consensus 110 iavihhl-sT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 110 IAVIHHL-STRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhh-hhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 4433211 111123668999999999999876644
No 436
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.51 E-value=6.2 Score=36.34 Aligned_cols=100 Identities=15% Similarity=0.151 Sum_probs=57.8
Q ss_pred CCCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCcc
Q 037807 67 PNPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTFD 144 (299)
Q Consensus 67 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~fD 144 (299)
.....||+.|+|. |..+..+++..+...+++++.+++-.+.++++ .. +.-+.....+..+.+.+. ....+|
T Consensus 167 ~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-ga------~~v~~~~~~~~~~~i~~~~~~~~~d 239 (345)
T cd08287 167 RPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREF-GA------TDIVAERGEEAVARVRELTGGVGAD 239 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-CC------ceEecCCcccHHHHHHHhcCCCCCC
Confidence 3457888866432 22334456666666789999888777777663 21 111111112222333322 235699
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+|+- .... ...+..+.+.|+++|.++...
T Consensus 240 ~il~-~~g~---------~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 240 AVLE-CVGT---------QESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred EEEE-CCCC---------HHHHHHHHHhhccCCEEEEec
Confidence 9883 2211 346788899999999998643
No 437
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=87.48 E-value=2.3 Score=40.47 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=24.0
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECC
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEID 101 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid 101 (299)
...+||++|+|+ |......+...++.+++.+|-|
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 467899999985 3333333344578899999988
No 438
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=87.47 E-value=6.2 Score=36.33 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=57.3
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
...+||+.|+|. |..+.++++..+. +|++++.+++-.+.+++. .. +.-+.....|..+.+.+. ..+|+|
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~-g~------~~~i~~~~~~~~~~~~~~--~~~d~v 232 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKL-GA------HHYIDTSKEDVAEALQEL--GGAKLI 232 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHc-CC------cEEecCCCccHHHHHHhc--CCCCEE
Confidence 457899998532 2233445666554 689999998888888653 21 111122223344444433 358999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+. .... ......+.+.|+++|.++.-.
T Consensus 233 i~-~~g~---------~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 233 LA-TAPN---------AKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EE-CCCc---------hHHHHHHHHHcccCCEEEEEe
Confidence 83 2111 335677888999999998643
No 439
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=87.46 E-value=5.1 Score=30.61 Aligned_cols=87 Identities=14% Similarity=0.124 Sum_probs=49.3
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+.++||++|+|.-+..+.-.-.....+|+++..+. +.++ .++++...+.. +. -..+|+|+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~------------~~i~~~~~~~~----~~-l~~~~lV~ 65 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSE------------GLIQLIRREFE----ED-LDGADLVF 65 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHH------------TSCEEEESS-G----GG-CTTESEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhh------------hHHHHHhhhHH----HH-HhhheEEE
Confidence 57899999998765544322122237899988776 2222 24555544432 11 34589999
Q ss_pred EcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecC
Q 037807 148 IDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
....+ .+.-+.+++..+.-|+++-.+.
T Consensus 66 ~at~d----------~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 66 AATDD----------PELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp E-SS-----------HHHHHHHHHHHHHTTSEEEETT
T ss_pred ecCCC----------HHHHHHHHHHHhhCCEEEEECC
Confidence 76555 3344555555666788876543
No 440
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=87.45 E-value=5.7 Score=36.61 Aligned_cols=99 Identities=14% Similarity=0.259 Sum_probs=58.8
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCccE
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~fDv 145 (299)
+..+||+.|+|. |..+.++++..+..+|++++.+++-.+.+++. .. +.-+.....+..+.+.+. ..+.+|+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l-g~------~~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM-GA------TRAVNVAKEDLRDVMAELGMTEGFDV 235 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-CC------cEEecCccccHHHHHHHhcCCCCCCE
Confidence 467888866543 33455566766665788888888777776652 21 111111122333333322 2356898
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+--... ...+..+.+.|+++|.++...
T Consensus 236 v~d~~g~----------~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 236 GLEMSGA----------PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred EEECCCC----------HHHHHHHHHHHhcCCEEEEEe
Confidence 8742211 456788899999999998764
No 441
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=87.38 E-value=6.8 Score=31.47 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=43.3
Q ss_pred CCCeEEEEeccccHHHHHHHh---cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCcc
Q 037807 68 NPKKVLLIGGGDGGILREISR---HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fD 144 (299)
+.++||+||+|+ +++.+++ ..+..+|+.+.-+.+-.+...+.++ ...++++.-+-.. +. -..+|
T Consensus 11 ~~~~vlviGaGg--~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~-------~~~~~~~~~~~~~---~~-~~~~D 77 (135)
T PF01488_consen 11 KGKRVLVIGAGG--AARAVAAALAALGAKEITIVNRTPERAEALAEEFG-------GVNIEAIPLEDLE---EA-LQEAD 77 (135)
T ss_dssp TTSEEEEESSSH--HHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT-------GCSEEEEEGGGHC---HH-HHTES
T ss_pred CCCEEEEECCHH--HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC-------ccccceeeHHHHH---HH-HhhCC
Confidence 578999999863 4444332 3367889999999775554433332 2356655443222 11 24699
Q ss_pred EEEEcCCCC
Q 037807 145 AIIIDAFDP 153 (299)
Q Consensus 145 vIi~D~~~~ 153 (299)
+||.-.+.+
T Consensus 78 ivI~aT~~~ 86 (135)
T PF01488_consen 78 IVINATPSG 86 (135)
T ss_dssp EEEE-SSTT
T ss_pred eEEEecCCC
Confidence 999765543
No 442
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=87.20 E-value=7.7 Score=31.42 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=46.4
Q ss_pred CeEEEEeccccHHHHHHHhc---CCccEEEEEECC--HHHHHHHHhhchhhhcCCCCCCEEEEEccHHH------HHHhc
Q 037807 70 KKVLLIGGGDGGILREISRH---ASVEQIHICEID--TMLINVYKEYFPEIAIGYEDSRVILHVCDGSE------YLKTV 138 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid--~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~------~l~~~ 138 (299)
|.||+.|++ ++++++++++ .+...|..+.-+ .+..+...+.++.. ..++.++..|..+ .+++.
T Consensus 1 k~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 1 KTVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP-----GAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT-----TSEEEEEESETTSHHHHHHHHHHH
T ss_pred CEEEEECCC-CHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc-----cccccccccccccccccccccccc
Confidence 357888866 5666666542 145678888888 44444333333322 3688888887532 22221
Q ss_pred --CCCCccEEEEcCCCC
Q 037807 139 --QSGTFDAIIIDAFDP 153 (299)
Q Consensus 139 --~~~~fDvIi~D~~~~ 153 (299)
.....|++|......
T Consensus 75 ~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 75 IKRFGPLDILINNAGIF 91 (167)
T ss_dssp HHHHSSESEEEEECSCT
T ss_pred ccccccccccccccccc
Confidence 146899999876543
No 443
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=87.08 E-value=6.7 Score=36.51 Aligned_cols=98 Identities=13% Similarity=0.182 Sum_probs=55.6
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEcc---HHHHHHhc-CCCC
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCD---GSEYLKTV-QSGT 142 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D---~~~~l~~~-~~~~ 142 (299)
...+||+.|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+.....+ ....+.+. ..+.
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREF-GA------DATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------CeEEcCcccccHHHHHHHHHHhCCCC
Confidence 467899987532 22334456666655899999888887777642 21 0001111111 11123222 2356
Q ss_pred ccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 143 FDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 143 fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+|+|+--... ........+.|+++|.++.-
T Consensus 250 ~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 250 ADVVIEASGH----------PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CcEEEECCCC----------hHHHHHHHHHhccCCEEEEE
Confidence 9988833211 33567778999999999864
No 444
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=87.00 E-value=2.7 Score=39.28 Aligned_cols=123 Identities=19% Similarity=0.147 Sum_probs=77.1
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCC-CccEEE
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSG-TFDAII 147 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~-~fDvIi 147 (299)
..+++++-+|.|++..-+... +.+-+.++|+|+..++.-+.+++. -.++..|..++..+.-.. .+|+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCCCEEE
Confidence 457999999999998777665 367788999999999999988762 456667776655432122 789999
Q ss_pred EcCCCCC----CC-------CCCCCcHHHHHHHHHhcCCCcEEEEecCCcccc-hHHHHHHHHHHhhh
Q 037807 148 IDAFDPI----RP-------GHDLFEGPFFELVAKALRPGGAMCIQAESLWFQ-QFSVQHLIDDCHRI 203 (299)
Q Consensus 148 ~D~~~~~----~~-------~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~-~~~~~~~~~~l~~~ 203 (299)
.-++... +. ...| ..+|. .+...++|.-.++=|....... ...+..+.+.|++.
T Consensus 73 gGpPCQ~FS~aG~r~~~~D~R~~L-~~~~~-r~I~~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~ 138 (328)
T COG0270 73 GGPPCQDFSIAGKRRGYDDPRGSL-FLEFI-RLIEQLRPKFFVLENVKGLLSSKGQTFDEIKKELEEL 138 (328)
T ss_pred eCCCCcchhhcCcccCCcCcccee-eHHHH-HHHHhhCCCEEEEecCchHHhcCchHHHHHHHHHHHc
Confidence 8654321 11 1223 24444 4556788844443344322222 23566666777654
No 445
>PRK06141 ornithine cyclodeaminase; Validated
Probab=86.99 E-value=16 Score=33.92 Aligned_cols=111 Identities=12% Similarity=0.192 Sum_probs=60.1
Q ss_pred cEEEEEecCCceEEEEcCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHH----HhcCCccEEEEEEC
Q 037807 25 NMMVFQSSSYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREI----SRHASVEQIHICEI 100 (299)
Q Consensus 25 ~i~v~e~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l----~~~~~~~~v~~VEi 100 (299)
-+.+++........++||...+.-+.... .-..+. .+..++.++|++||+|. .++.. +...+..+|.+.+.
T Consensus 84 ~v~l~d~~tG~p~ai~d~~~lT~~RTaa~-sala~~--~La~~~~~~v~iiG~G~--~a~~~~~al~~~~~~~~V~V~~R 158 (314)
T PRK06141 84 TYLLFDGRTGEPLALVDGTELTARRTAAA-SALAAS--YLARKDASRLLVVGTGR--LASLLALAHASVRPIKQVRVWGR 158 (314)
T ss_pred EEEEEECCCCCEEEEEcCcchhcchhHHH-HHHHHH--HhCCCCCceEEEECCcH--HHHHHHHHHHhcCCCCEEEEEcC
Confidence 34455544433445667776655443211 111111 13346788999999874 33333 22235789999999
Q ss_pred CHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCC
Q 037807 101 DTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAF 151 (299)
Q Consensus 101 d~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~ 151 (299)
+++-.+...+.+... ..++.. ..+..+.+ ...|+|++-.+
T Consensus 159 s~~~a~~~a~~~~~~-----g~~~~~-~~~~~~av-----~~aDIVi~aT~ 198 (314)
T PRK06141 159 DPAKAEALAAELRAQ-----GFDAEV-VTDLEAAV-----RQADIISCATL 198 (314)
T ss_pred CHHHHHHHHHHHHhc-----CCceEE-eCCHHHHH-----hcCCEEEEeeC
Confidence 988766555544321 112332 34544443 35799976444
No 446
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.77 E-value=2.6 Score=43.79 Aligned_cols=102 Identities=12% Similarity=0.152 Sum_probs=64.2
Q ss_pred CeEEEEeccc--cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhh-----h-cCCC-------CCCEEEEEccHHHH
Q 037807 70 KKVLLIGGGD--GGILREISRHASVEQIHICEIDTMLINVYKEYFPEI-----A-IGYE-------DSRVILHVCDGSEY 134 (299)
Q Consensus 70 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-----~-~~~~-------~~rv~v~~~D~~~~ 134 (299)
++|.+||+|+ .+++..++.. + -+|+.+|++++.++.+++.+... . +.+. -.++++. .|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 387 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-G-VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY--- 387 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH---
Confidence 6899999997 3344445555 3 57999999999998877654322 0 0011 0234332 232
Q ss_pred HHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 135 LKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 135 l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
.. -..-|+||=-.+... -...++|+.+-+.++|+.+|.+|+.+
T Consensus 388 -~~--~~~aDlViEav~E~l-----~~K~~vf~~l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 388 -AG--FERVDVVVEAVVENP-----KVKAAVLAEVEQKVREDTILASNTST 430 (715)
T ss_pred -HH--hcCCCEEEecccCcH-----HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 11 135788885433321 12378999999999999999988744
No 447
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=86.74 E-value=6.2 Score=39.98 Aligned_cols=75 Identities=16% Similarity=0.147 Sum_probs=43.8
Q ss_pred CCCeEEEEecccc-HHHHHHHhcCCccEEEEEECCHHH---------HHHHHhhchhhhcCCCCCCEEEEEcc---HHHH
Q 037807 68 NPKKVLLIGGGDG-GILREISRHASVEQIHICEIDTML---------INVYKEYFPEIAIGYEDSRVILHVCD---GSEY 134 (299)
Q Consensus 68 ~~~~VL~IG~G~G-~~~~~l~~~~~~~~v~~VEid~~v---------i~~a~~~~~~~~~~~~~~rv~v~~~D---~~~~ 134 (299)
+..+|++||.|+. ......+-..+..++.+||-|... ++.|++ + ++.+.+..-+ ..++
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~--------~-n~~v~v~~i~~~~~~dl 198 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEE--------T-DDALLVQEIDFAEDQHL 198 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHH--------h-CCCCceEeccCCcchhH
Confidence 3568999999984 444444445578899999887653 333333 1 3344333322 2222
Q ss_pred HHhcCCCCccEEEEcCCCC
Q 037807 135 LKTVQSGTFDAIIIDAFDP 153 (299)
Q Consensus 135 l~~~~~~~fDvIi~D~~~~ 153 (299)
..- -+.||+||+-+.++
T Consensus 199 ~ev--~~~~DiVi~vsDdy 215 (637)
T TIGR03693 199 HEA--FEPADWVLYVSDNG 215 (637)
T ss_pred HHh--hcCCcEEEEECCCC
Confidence 222 36799999865554
No 448
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=86.70 E-value=4.6 Score=40.45 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=58.1
Q ss_pred CCCeEEEEeccccHHHHHHHhc---CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHH--h-cCCC
Q 037807 68 NPKKVLLIGGGDGGILREISRH---ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLK--T-VQSG 141 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~--~-~~~~ 141 (299)
..++||+-|+| |+++.++.+. .+.+++...|.|+.-+..-++.+... +...++..+.+|.++.-+ + ..+-
T Consensus 249 ~gK~vLVTGag-GSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~---~~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 249 TGKTVLVTGGG-GSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK---FPELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh---CCCcceEEEecccccHHHHHHHHhcC
Confidence 45788888855 8888887652 24689999999999888777776542 235789999999976422 1 1245
Q ss_pred CccEEEEcCCC
Q 037807 142 TFDAIIIDAFD 152 (299)
Q Consensus 142 ~fDvIi~D~~~ 152 (299)
+.|+|+.-+..
T Consensus 325 kvd~VfHAAA~ 335 (588)
T COG1086 325 KVDIVFHAAAL 335 (588)
T ss_pred CCceEEEhhhh
Confidence 79999985543
No 449
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=86.69 E-value=1.8 Score=39.81 Aligned_cols=31 Identities=35% Similarity=0.724 Sum_probs=22.1
Q ss_pred eEEEEeccccHHHHHHHh---cCCccEEEEEECCHH
Q 037807 71 KVLLIGGGDGGILREISR---HASVEQIHICEIDTM 103 (299)
Q Consensus 71 ~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~~ 103 (299)
+||++|+| +++-++++ ..++.+++.||.|--
T Consensus 1 kVlVVGaG--GlG~eilknLal~Gvg~I~IvD~D~V 34 (291)
T cd01488 1 KILVIGAG--GLGCELLKNLALSGFRNIHVIDMDTI 34 (291)
T ss_pred CEEEECCC--HHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 58999987 34444443 567899999997753
No 450
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=86.64 E-value=4.4 Score=35.73 Aligned_cols=72 Identities=18% Similarity=0.360 Sum_probs=48.5
Q ss_pred CeEEEEeccccH--HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHH--HHHHhcCCCCccE
Q 037807 70 KKVLLIGGGDGG--ILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGS--EYLKTVQSGTFDA 145 (299)
Q Consensus 70 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~--~~l~~~~~~~fDv 145 (299)
++++++|+|.=+ +++.|.+.. ..|+.||.|++.++...+ +.....++++|+. +.|++..-..+|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~~~~~~~~~---------~~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG--HNVVLIDRDEERVEEFLA---------DELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--CceEEEEcCHHHHHHHhh---------hhcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 478999998532 333444442 579999999998776332 1235678888884 4666654578999
Q ss_pred EEEcCCC
Q 037807 146 IIIDAFD 152 (299)
Q Consensus 146 Ii~D~~~ 152 (299)
++....+
T Consensus 70 vva~t~~ 76 (225)
T COG0569 70 VVAATGN 76 (225)
T ss_pred EEEeeCC
Confidence 9986544
No 451
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=86.56 E-value=8.7 Score=35.56 Aligned_cols=94 Identities=20% Similarity=0.137 Sum_probs=52.9
Q ss_pred CCCeEEEEeccccHHHHHHHh---cCCccEEEEEECCHHHH-HHHHhhchhhhcCCCCCCEEEEE-ccHHHHHHhcCCCC
Q 037807 68 NPKKVLLIGGGDGGILREISR---HASVEQIHICEIDTMLI-NVYKEYFPEIAIGYEDSRVILHV-CDGSEYLKTVQSGT 142 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~~vi-~~a~~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~ 142 (299)
...+|++||+| .+++.+++ ..+..+|++++.+++-. ++++++ + . .++. .|..+.+ ..
T Consensus 177 ~~~~V~ViGaG--~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g-------~---~~~~~~~~~~~l-----~~ 238 (311)
T cd05213 177 KGKKVLVIGAG--EMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-G-------G---NAVPLDELLELL-----NE 238 (311)
T ss_pred cCCEEEEECcH--HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-C-------C---eEEeHHHHHHHH-----hc
Confidence 46899999885 44444333 33567899999998754 555543 2 1 2221 2222222 35
Q ss_pred ccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCc
Q 037807 143 FDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESL 186 (299)
Q Consensus 143 fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~ 186 (299)
+|+||.-...+.. .+.++.+.+....+|.+++....|
T Consensus 239 aDvVi~at~~~~~-------~~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 239 ADVVISATGAPHY-------AKIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred CCEEEECCCCCch-------HHHHHHHHhhCCCCCeEEEEeCCC
Confidence 7999987655421 233444443343467788765443
No 452
>PRK07102 short chain dehydrogenase; Provisional
Probab=86.47 E-value=11 Score=32.71 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=44.7
Q ss_pred CeEEEEeccccHHHHHHHhcC--CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHH------HHHhcCCC
Q 037807 70 KKVLLIGGGDGGILREISRHA--SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSE------YLKTVQSG 141 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~------~l~~~~~~ 141 (299)
++||+.|+ +|+++..++++. ...+|++++.+++-.+...+.+... ...+++++..|..+ ++.+. ..
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~-~~ 75 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR----GAVAVSTHELDILDTASHAAFLDSL-PA 75 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh----cCCeEEEEecCCCChHHHHHHHHHH-hh
Confidence 47888885 466666655421 1247999999886554333332211 23578888887654 23322 34
Q ss_pred CccEEEEcC
Q 037807 142 TFDAIIIDA 150 (299)
Q Consensus 142 ~fDvIi~D~ 150 (299)
++|+++...
T Consensus 76 ~~d~vv~~a 84 (243)
T PRK07102 76 LPDIVLIAV 84 (243)
T ss_pred cCCEEEECC
Confidence 679999765
No 453
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.46 E-value=9.8 Score=36.74 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=46.8
Q ss_pred eEEEEeccccHHHHHHHhc--CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHH--HHHhcCCCCccEE
Q 037807 71 KVLLIGGGDGGILREISRH--ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSE--YLKTVQSGTFDAI 146 (299)
Q Consensus 71 ~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~--~l~~~~~~~fDvI 146 (299)
+|+++|+ |.+++.+++. ....+|+++|.|++.++.+++. ..++++.+|+.+ .+.+..-+.+|.|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~----------~~~~~~~gd~~~~~~l~~~~~~~a~~v 69 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR----------LDVRTVVGNGSSPDVLREAGAEDADLL 69 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh----------cCEEEEEeCCCCHHHHHHcCCCcCCEE
Confidence 6889987 5677766651 1235799999999987766542 246788888753 3333324679998
Q ss_pred EEcCCC
Q 037807 147 IIDAFD 152 (299)
Q Consensus 147 i~D~~~ 152 (299)
++-..+
T Consensus 70 i~~~~~ 75 (453)
T PRK09496 70 IAVTDS 75 (453)
T ss_pred EEecCC
Confidence 886554
No 454
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.39 E-value=9.2 Score=34.34 Aligned_cols=95 Identities=19% Similarity=0.300 Sum_probs=59.9
Q ss_pred CCCCeEEEEec--cccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCcc
Q 037807 67 PNPKKVLLIGG--GDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 67 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fD 144 (299)
.+..+||+.|+ +.|..+.++++..+ .+|+++..+++-.+.+++ +.. ..+-....+..+.+.+. .+.+|
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~-~g~-------~~~~~~~~~~~~~i~~~-~~~~d 210 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALG-ATVTATTRSPERAALLKE-LGA-------DEVVIDDGAIAEQLRAA-PGGFD 210 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHh-cCC-------cEEEecCccHHHHHHHh-CCCce
Confidence 45689999985 55666777787765 458888888887777754 221 11100122333444444 46799
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+|+-... ...+..+.+.|+++|.++..
T Consensus 211 ~vl~~~~-----------~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 211 KVLELVG-----------TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred EEEECCC-----------hHHHHHHHHHhccCCEEEEE
Confidence 9983221 23467778999999998764
No 455
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=86.13 E-value=0.31 Score=38.10 Aligned_cols=39 Identities=23% Similarity=0.442 Sum_probs=26.0
Q ss_pred CccEEEEcCCCCC-----CCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 142 TFDAIIIDAFDPI-----RPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 142 ~fDvIi~D~~~~~-----~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+||+|++=+-.-+ |. .. -..||+.+++.|+|||+|++..
T Consensus 1 ~yDvilclSVtkWIHLn~GD-~G--l~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGD-EG--LKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHH-HH--HHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcC-HH--HHHHHHHHHHhhCCCCEEEEeC
Confidence 4899998432211 00 01 1679999999999999999965
No 456
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=86.10 E-value=1.9 Score=44.96 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=64.1
Q ss_pred CeEEEEeccc--cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhh------cCCCC-------CCEEEEEccHHHH
Q 037807 70 KKVLLIGGGD--GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIA------IGYED-------SRVILHVCDGSEY 134 (299)
Q Consensus 70 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~------~~~~~-------~rv~v~~~D~~~~ 134 (299)
++|-+||+|+ ++++..++.. + .+|+.+|.+++.++.++++....- +.+.. .+++.. .|..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~-G-~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~-- 410 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK-G-LKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYS-- 410 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC-C-CcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH--
Confidence 6899999985 3344445555 3 579999999999998877654321 00110 233322 2221
Q ss_pred HHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 135 LKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 135 l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
. -...|+||=-.+... -...++|+.+-+.++|+.+|.+|+.+
T Consensus 411 --~--~~~aDlViEAv~E~l-----~~K~~vf~~l~~~~~~~~ilasNTSs 452 (737)
T TIGR02441 411 --G--FKNADMVIEAVFEDL-----SLKHKVIKEVEAVVPPHCIIASNTSA 452 (737)
T ss_pred --H--hccCCeehhhccccH-----HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 1 135688884333321 12378999999999999999998744
No 457
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.09 E-value=4 Score=37.03 Aligned_cols=89 Identities=17% Similarity=0.035 Sum_probs=54.5
Q ss_pred eEEEEeccc--cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEE
Q 037807 71 KVLLIGGGD--GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIII 148 (299)
Q Consensus 71 ~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~ 148 (299)
+|.+||+|. |.+++.+.+.. .+|+++|.+++.++.+.+.- .+.....+. +. -...|+||+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g--~~V~~~d~~~~~~~~a~~~g----------~~~~~~~~~-~~-----~~~aDlVil 63 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG--HTVYGVSRRESTCERAIERG----------LVDEASTDL-SL-----LKDCDLVIL 63 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCC----------CcccccCCH-hH-----hcCCCEEEE
Confidence 688999885 44555555542 47999999999888776531 011111121 11 235799998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 149 DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 149 D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
-.+... ..++++.+...++++- +++.++|
T Consensus 64 avp~~~-------~~~~~~~l~~~l~~~~-ii~d~~S 92 (279)
T PRK07417 64 ALPIGL-------LLPPSEQLIPALPPEA-IVTDVGS 92 (279)
T ss_pred cCCHHH-------HHHHHHHHHHhCCCCc-EEEeCcc
Confidence 765431 2567788888887764 4455544
No 458
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=86.08 E-value=12 Score=34.21 Aligned_cols=97 Identities=16% Similarity=0.267 Sum_probs=58.3
Q ss_pred CCCCeEEEEeccc-cHHHHHHHhc-CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEE-ccHHHHHHhcCCCCc
Q 037807 67 PNPKKVLLIGGGD-GGILREISRH-ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHV-CDGSEYLKTVQSGTF 143 (299)
Q Consensus 67 ~~~~~VL~IG~G~-G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~f 143 (299)
....+||+.|+|. |..+..++++ .+ .+|+++.-+++-.+.++++ .. +.-+.... .+..+.+.+. .+.+
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g-~~v~~~~~~~~~~~~~~~~-g~------~~v~~~~~~~~~~~~v~~~-~~~~ 231 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFN-AKVIAVDINDDKLALAKEV-GA------DLTINSKRVEDVAKIIQEK-TGGA 231 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCChHHHHHHHHc-CC------cEEecccccccHHHHHHHh-cCCC
Confidence 3567899998532 2334445564 34 4789999999988888653 21 10011101 2333444433 2358
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
|+++.+... .+.+..+.+.|+++|.++.-
T Consensus 232 d~vi~~~~~----------~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 232 HAAVVTAVA----------KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred cEEEEeCCC----------HHHHHHHHHhccCCCEEEEE
Confidence 877665432 45678889999999998864
No 459
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=86.05 E-value=11 Score=34.58 Aligned_cols=96 Identities=11% Similarity=0.140 Sum_probs=56.4
Q ss_pred CCCeEEEEeccccHHH---HHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHh-cCCCCc
Q 037807 68 NPKKVLLIGGGDGGIL---REISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKT-VQSGTF 143 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~---~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~~f 143 (299)
+..+||+.|+ |.++ ..+++..+..+|++++.+++-.+.++++ .. .-+.....+..+-+.+ .+.+.+
T Consensus 167 ~~~~vlI~g~--g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~-g~-------~~~~~~~~~~~~~l~~~~~~~~~ 236 (344)
T cd08284 167 PGDTVAVIGC--GPVGLCAVLSAQVLGAARVFAVDPVPERLERAAAL-GA-------EPINFEDAEPVERVREATEGRGA 236 (344)
T ss_pred cCCEEEEECC--cHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHh-CC-------eEEecCCcCHHHHHHHHhCCCCC
Confidence 4678999864 4444 4455655555788888888777776652 21 0011111233333332 223569
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+|+--... .+......+.|+++|.++.-.
T Consensus 237 dvvid~~~~----------~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 237 DVVLEAVGG----------AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred CEEEECCCC----------HHHHHHHHHhcccCCEEEEEC
Confidence 988743221 346778889999999988643
No 460
>PRK06949 short chain dehydrogenase; Provisional
Probab=86.02 E-value=17 Score=31.65 Aligned_cols=77 Identities=12% Similarity=0.174 Sum_probs=47.3
Q ss_pred CCCeEEEEeccccHHHHHHHhc---CCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHH------HHHhc
Q 037807 68 NPKKVLLIGGGDGGILREISRH---ASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSE------YLKTV 138 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~------~l~~~ 138 (299)
..++||+.| |+|++++.+++. .+ .+|+++..+++-++...+.+... ..+++++..|..+ .+.+.
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 80 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAG-AKVVLASRRVERLKELRAEIEAE-----GGAAHVVSLDVTDYQSIKAAVAHA 80 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEecCCCHHHHHHHHHHH
Confidence 357888888 446676666542 23 47999999988776555544321 2467777777632 22211
Q ss_pred --CCCCccEEEEcCC
Q 037807 139 --QSGTFDAIIIDAF 151 (299)
Q Consensus 139 --~~~~fDvIi~D~~ 151 (299)
..+..|+||....
T Consensus 81 ~~~~~~~d~li~~ag 95 (258)
T PRK06949 81 ETEAGTIDILVNNSG 95 (258)
T ss_pred HHhcCCCCEEEECCC
Confidence 1346899998654
No 461
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=85.91 E-value=9.8 Score=34.70 Aligned_cols=96 Identities=23% Similarity=0.321 Sum_probs=59.2
Q ss_pred CCeEEEEec--cccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 69 PKKVLLIGG--GDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 69 ~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
..+||+.|+ +-|..+..+++..+..+|.+++.+++-.+.+++ +.. +.-+... .+..+.+.....+.+|++
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~------~~~~~~~-~~~~~~i~~~~~~~~d~v 221 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKE-LGA------DHVINHH-QDLAEQLEALGIEPVDYI 221 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHh-cCC------cEEEeCC-ccHHHHHHhhCCCCCCEE
Confidence 578999984 445566667776553678999998888887755 321 1011111 133333333323569988
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
+-.... ......+.+.|+++|.++.-
T Consensus 222 l~~~~~----------~~~~~~~~~~l~~~g~~v~~ 247 (336)
T cd08252 222 FCLTDT----------DQHWDAMAELIAPQGHICLI 247 (336)
T ss_pred EEccCc----------HHHHHHHHHHhcCCCEEEEe
Confidence 833221 34577889999999998864
No 462
>PRK07340 ornithine cyclodeaminase; Validated
Probab=85.89 E-value=12 Score=34.60 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=46.3
Q ss_pred CCCCCeEEEEeccccHHH--HHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCc
Q 037807 66 IPNPKKVLLIGGGDGGIL--REISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTF 143 (299)
Q Consensus 66 ~~~~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~f 143 (299)
.++.++|++||+|.=+-. ..++...+.++|.+.+.+++-.+...+.+... .+.+...|..+.+ ...
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~-------~~~~~~~~~~~av-----~~a 189 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL-------GPTAEPLDGEAIP-----EAV 189 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-------CCeeEECCHHHHh-----hcC
Confidence 356789999999743322 12222245688999999988766555544321 2233345655444 358
Q ss_pred cEEEEcCCCC
Q 037807 144 DAIIIDAFDP 153 (299)
Q Consensus 144 DvIi~D~~~~ 153 (299)
|+|+.-.+.+
T Consensus 190 DiVitaT~s~ 199 (304)
T PRK07340 190 DLVVTATTSR 199 (304)
T ss_pred CEEEEccCCC
Confidence 9999865543
No 463
>PLN02702 L-idonate 5-dehydrogenase
Probab=85.83 E-value=6.3 Score=36.83 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=59.4
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEE--EEccHHHHHHh---cCCC
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVIL--HVCDGSEYLKT---VQSG 141 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v--~~~D~~~~l~~---~~~~ 141 (299)
...+||++|+|. |..+..+++..+...|++++.++...+.++++-. +..+.+ ...+..+-+.+ ...+
T Consensus 181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (364)
T PLN02702 181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGA-------DEIVLVSTNIEDVESEVEEIQKAMGG 253 (364)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC-------CEEEecCcccccHHHHHHHHhhhcCC
Confidence 457899997532 3344556666666778999999988888876421 111111 11233333321 1135
Q ss_pred CccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 142 TFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 142 ~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
.+|+|+--... ...+..+.+.|+++|.++.-
T Consensus 254 ~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 254 GIDVSFDCVGF----------NKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred CCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence 68988843221 33578888999999998764
No 464
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=85.71 E-value=5 Score=29.72 Aligned_cols=87 Identities=16% Similarity=0.153 Sum_probs=51.3
Q ss_pred eEEEEeccccHHH--HHHHhcC-CccEEEEE-ECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 71 KVLLIGGGDGGIL--REISRHA-SVEQIHIC-EIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 71 ~VL~IG~G~G~~~--~~l~~~~-~~~~v~~V-Eid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+|.+||+|.=+.+ +.++++. ...+|..+ +.+++-.+...+.++ +.+...|..+.++ ..|+|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~~~~-----~advv 65 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG----------VQATADDNEEAAQ-----EADVV 65 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT----------TEEESEEHHHHHH-----HTSEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc----------cccccCChHHhhc-----cCCEE
Confidence 5778877754432 2333332 23678855 999998887766543 3334345555554 35999
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEE
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMC 180 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv 180 (299)
++-.+... ..++++.+ ..+.++.+++
T Consensus 66 ilav~p~~-------~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 66 ILAVKPQQ-------LPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp EE-S-GGG-------HHHHHHHH-HHHHTTSEEE
T ss_pred EEEECHHH-------HHHHHHHH-hhccCCCEEE
Confidence 98755432 26677777 6666666665
No 465
>PRK10458 DNA cytosine methylase; Provisional
Probab=85.70 E-value=3.8 Score=40.29 Aligned_cols=125 Identities=14% Similarity=0.085 Sum_probs=74.4
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHH-------------
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYL------------- 135 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l------------- 135 (299)
.-+++++-||.|++..-+-.. +..-|-++|+|+...+.-+.++.. ++...++.+|..+.-
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~------~p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYC------DPATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCC------CCccceeccChhhCccccccccchhhhh
Confidence 468999999999999888665 456788999999999988888742 233344445544431
Q ss_pred ---HhcCCCCccEEEEcCCCCC----CCC----------------CCCCcHHHHHHHHHhcCCCcEEEEecCCccc--ch
Q 037807 136 ---KTVQSGTFDAIIIDAFDPI----RPG----------------HDLFEGPFFELVAKALRPGGAMCIQAESLWF--QQ 190 (299)
Q Consensus 136 ---~~~~~~~fDvIi~D~~~~~----~~~----------------~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~--~~ 190 (299)
... ....|+|+..++... +.. ..|+ .++++ +.+.++|.-+++=|+..... ..
T Consensus 161 ~~~~~~-~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf-~~~~r-ii~~~kPk~fvlENV~gl~s~~~g 237 (467)
T PRK10458 161 EHIRQH-IPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLF-FDVAR-IIDAKRPAIFVLENVKNLKSHDKG 237 (467)
T ss_pred hhhhcc-CCCCCEEEEcCCCCccchhcccccccccccccccCCccccHH-HHHHH-HHHHhCCCEEEEeCcHhhhccccc
Confidence 111 135799887554321 110 0011 33333 33457887666655533222 12
Q ss_pred HHHHHHHHHHhhh
Q 037807 191 FSVQHLIDDCHRI 203 (299)
Q Consensus 191 ~~~~~~~~~l~~~ 203 (299)
..+..+++.|.+.
T Consensus 238 ~~f~~i~~~L~~l 250 (467)
T PRK10458 238 KTFRIIMQTLDEL 250 (467)
T ss_pred HHHHHHHHHHHHc
Confidence 3567777777653
No 466
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.50 E-value=19 Score=33.32 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=55.4
Q ss_pred eEEEEeccc-cHHHHH-HHhcCCccEEEEEECCHHHHH-HHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 71 KVLLIGGGD-GGILRE-ISRHASVEQIHICEIDTMLIN-VYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 71 ~VL~IG~G~-G~~~~~-l~~~~~~~~v~~VEid~~vi~-~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
+|.+||+|. |..... ++......++..+|++++..+ .+.... .. ..+. +...+..+|..+ . ...|+|+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~-~~-~~~~-~~~~i~~~d~~~----l--~~aDiVi 72 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLA-HG-TPFV-KPVRIYAGDYAD----C--KGADVVV 72 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHH-cc-cccc-CCeEEeeCCHHH----h--CCCCEEE
Confidence 689999986 333333 334433468999999987665 232221 11 1112 234555555322 2 4579999
Q ss_pred EcCCCCCCCCCCCC-----cHHHHHHHHH---hcCCCcEEEEe
Q 037807 148 IDAFDPIRPGHDLF-----EGPFFELVAK---ALRPGGAMCIQ 182 (299)
Q Consensus 148 ~D~~~~~~~~~~l~-----t~ef~~~~~~---~LkpgGvlv~~ 182 (299)
+-...+..+....+ +...++.+.+ ...|+|++++-
T Consensus 73 ita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~ 115 (308)
T cd05292 73 ITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV 115 (308)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 97766544332111 2333444432 25688988774
No 467
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=85.46 E-value=3.1 Score=43.15 Aligned_cols=104 Identities=20% Similarity=0.199 Sum_probs=65.2
Q ss_pred CCeEEEEeccc--cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhh------cCCC-------CCCEEEEEccHHH
Q 037807 69 PKKVLLIGGGD--GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIA------IGYE-------DSRVILHVCDGSE 133 (299)
Q Consensus 69 ~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~------~~~~-------~~rv~v~~~D~~~ 133 (299)
-++|.+||+|. .+++..++...+ -.|+.+|.+++.++.+++.+...- +.+. -.++++. .|. +
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~ 385 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAG-LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY-R 385 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh-H
Confidence 47899999987 344555552323 579999999999988876544320 0011 0234433 221 1
Q ss_pred HHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 134 YLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 134 ~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
- -...|+||=-.+... -...++|+.+-+.++|+.+|+.|+.+
T Consensus 386 ~-----~~~aDlViEav~E~~-----~~K~~v~~~le~~~~~~~ilasnTS~ 427 (708)
T PRK11154 386 G-----FKHADVVIEAVFEDL-----ALKQQMVAEVEQNCAPHTIFASNTSS 427 (708)
T ss_pred H-----hccCCEEeecccccH-----HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 1 135788884433321 12378999999999999999988744
No 468
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.20 E-value=4 Score=37.58 Aligned_cols=98 Identities=13% Similarity=0.224 Sum_probs=53.8
Q ss_pred CeEEEEeccc--cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhch----hh-hcCC-C-------CCCEEEEEccHHHH
Q 037807 70 KKVLLIGGGD--GGILREISRHASVEQIHICEIDTMLINVYKEYFP----EI-AIGY-E-------DSRVILHVCDGSEY 134 (299)
Q Consensus 70 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~----~~-~~~~-~-------~~rv~v~~~D~~~~ 134 (299)
.+|.+||+|. +.++..++++. .+|+++|.+++.++.+++... .. ..+. + ..++++ ..|..+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G--~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~-~~~~~~a 79 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG--HEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV-TDSLADA 79 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC--CeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE-ECcHHHh
Confidence 3799999884 23455555553 479999999998887654321 11 0010 0 012332 2343322
Q ss_pred HHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEE
Q 037807 135 LKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMC 180 (299)
Q Consensus 135 l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv 180 (299)
+ ...|+|+...++... ....+++.+.+.++++-+++
T Consensus 80 ~-----~~ad~Vi~avpe~~~-----~k~~~~~~l~~~~~~~~ii~ 115 (308)
T PRK06129 80 V-----ADADYVQESAPENLE-----LKRALFAELDALAPPHAILA 115 (308)
T ss_pred h-----CCCCEEEECCcCCHH-----HHHHHHHHHHHhCCCcceEE
Confidence 2 347999987765411 12556777766665554443
No 469
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=85.07 E-value=13 Score=33.92 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=56.4
Q ss_pred CCCCeEEEEecc-ccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccE
Q 037807 67 PNPKKVLLIGGG-DGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 67 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDv 145 (299)
....+||+.|+| -|..+..+++..+. +|+++..+++..+.+++. .. + .++..+-....... .+.+|+
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~-g~------~---~~~~~~~~~~~~~~-~~~~d~ 228 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKL-GA------D---EVVDSGAELDEQAA-AGGADV 228 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh-CC------c---EEeccCCcchHHhc-cCCCCE
Confidence 345789999876 45555556666554 689999999888877553 21 0 11111111111112 346998
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
++.-... ......+.+.|+++|.++.-
T Consensus 229 vi~~~~~----------~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 229 ILVTVVS----------GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred EEECCCc----------HHHHHHHHHhcccCCEEEEE
Confidence 8843221 34567788999999988864
No 470
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=85.01 E-value=1.8 Score=39.86 Aligned_cols=74 Identities=15% Similarity=0.271 Sum_probs=49.7
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc----CCCC
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV----QSGT 142 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~----~~~~ 142 (299)
....+|..||.|+..++..+.+.| .+|++||+++.-+.+-+-.+..... -|+ ++|...|+... ....
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~P--a~id~VDlN~ahiAln~lklaA~R~---Lp~----h~dl~r~~a~a~t~~n~~~ 132 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAP--ARIDVVDLNPAHIALNRLKLAAFRH---LPS----HEDLVRFFALAGTRRNSQA 132 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCC--ceeEEEeCCHHHHHHHHHHHHHHhh---ccc----chhhHHHhhhhcccccchh
Confidence 356789999999776777777776 6899999999998877755443310 011 23666666432 2345
Q ss_pred ccEEEEc
Q 037807 143 FDAIIID 149 (299)
Q Consensus 143 fDvIi~D 149 (299)
||+-+..
T Consensus 133 yD~flae 139 (414)
T COG5379 133 YDRFLAE 139 (414)
T ss_pred hhccccc
Confidence 8888763
No 471
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=84.92 E-value=8.4 Score=28.69 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=51.4
Q ss_pred EEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcC
Q 037807 95 IHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALR 174 (299)
Q Consensus 95 v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~Lk 174 (299)
|..||=++...+..++.+... .-..-....++.+.+.......+|+|++|...+... ..++++.+++.-
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~-----~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~-----~~~~~~~i~~~~- 69 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERA-----GYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGD-----GLELLEQIRQIN- 69 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSB-----HHHHHHHHHHHT-
T ss_pred cEEEECCHHHHHHHHHHHHhC-----CCCEEEEECCHHHHHHHhcccCceEEEEEeeecccc-----cccccccccccc-
Confidence 567899999999999988732 111223556666655544356799999997655321 277888887766
Q ss_pred CCcEEEEec
Q 037807 175 PGGAMCIQA 183 (299)
Q Consensus 175 pgGvlv~~~ 183 (299)
++..+++-+
T Consensus 70 ~~~~ii~~t 78 (112)
T PF00072_consen 70 PSIPIIVVT 78 (112)
T ss_dssp TTSEEEEEE
T ss_pred ccccEEEec
Confidence 666555433
No 472
>PLN00016 RNA-binding protein; Provisional
Probab=84.77 E-value=4.7 Score=38.13 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=44.7
Q ss_pred CCCeEEEE---eccccHHHHHHHhcC--CccEEEEEECCHHHHHHHHh-hchhhhcCCCCCCEEEEEccHHHHHHhcCCC
Q 037807 68 NPKKVLLI---GGGDGGILREISRHA--SVEQIHICEIDTMLINVYKE-YFPEIAIGYEDSRVILHVCDGSEYLKTVQSG 141 (299)
Q Consensus 68 ~~~~VL~I---G~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~-~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~ 141 (299)
..++||++ |||+|.++..+++.. ...+|+++..++.-...... .+... ..+....++++.+|..+........
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~-~~l~~~~v~~v~~D~~d~~~~~~~~ 129 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRF-SELSSAGVKTVWGDPADVKSKVAGA 129 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhh-hHhhhcCceEEEecHHHHHhhhccC
Confidence 45789999 346677666655421 12578999887643221110 00000 0011245899999987732222235
Q ss_pred CccEEEEc
Q 037807 142 TFDAIIID 149 (299)
Q Consensus 142 ~fDvIi~D 149 (299)
.+|+||..
T Consensus 130 ~~d~Vi~~ 137 (378)
T PLN00016 130 GFDVVYDN 137 (378)
T ss_pred CccEEEeC
Confidence 79999864
No 473
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=84.73 E-value=10 Score=34.78 Aligned_cols=100 Identities=15% Similarity=0.210 Sum_probs=57.8
Q ss_pred CCCCeEEEEecc-ccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHh-cCCCCcc
Q 037807 67 PNPKKVLLIGGG-DGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKT-VQSGTFD 144 (299)
Q Consensus 67 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~~fD 144 (299)
.+..+||+.|+| -|..+..+++..+...|.++.-+++..+.++++ .. +.-+.....+..+.+.+ ...+.+|
T Consensus 164 ~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~-g~------~~~~~~~~~~~~~~i~~~~~~~~vd 236 (343)
T cd08235 164 KPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKL-GA------DYTIDAAEEDLVEKVRELTDGRGAD 236 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-CC------cEEecCCccCHHHHHHHHhCCcCCC
Confidence 456799999754 333445566665555488888888887777542 11 00011111222222322 2234599
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+|+-.... ......+.+.|+++|.++.-.
T Consensus 237 ~vld~~~~----------~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 237 VVIVATGS----------PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred EEEECCCC----------hHHHHHHHHHhhcCCEEEEEe
Confidence 98843221 346778889999999998643
No 474
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=84.71 E-value=3.4 Score=40.46 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=56.5
Q ss_pred CCCeEEEEeccccHHHHHHHhcCCccEEE------EEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCC
Q 037807 68 NPKKVLLIGGGDGGILREISRHASVEQIH------ICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSG 141 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~------~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~ 141 (299)
..++|++||+|.=+.+..+--+....+|+ ++|.+....+.|++. .+++ .+..+.+ .
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~d-----------GF~v--~~~~Ea~-----~ 96 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATEN-----------GFKV--GTYEELI-----P 96 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhc-----------CCcc--CCHHHHH-----H
Confidence 46899999999766654442222222444 444445454444432 1221 3433333 4
Q ss_pred CccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 142 TFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 142 ~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
+.|+|++-.++.. ...+|+.+...||||..|.+..
T Consensus 97 ~ADvVviLlPDt~-------q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 97 QADLVINLTPDKQ-------HSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred hCCEEEEcCChHH-------HHHHHHHHHhhCCCCCEEEecC
Confidence 5799999877752 2778899999999999998754
No 475
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=84.66 E-value=11 Score=34.69 Aligned_cols=99 Identities=20% Similarity=0.325 Sum_probs=61.3
Q ss_pred CCCCeEEEEecc--ccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCc
Q 037807 67 PNPKKVLLIGGG--DGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTF 143 (299)
Q Consensus 67 ~~~~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~f 143 (299)
....+||+.|+| .|..+..+++..+. +|+++.-+++-.+.+++ +.. +.-+.....|..+-+.+. ..+.+
T Consensus 164 ~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~-~g~------~~v~~~~~~~~~~~~~~~~~~~~v 235 (341)
T cd08297 164 KPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKE-LGA------DAFVDFKKSDDVEAVKELTGGGGA 235 (341)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH-cCC------cEEEcCCCccHHHHHHHHhcCCCC
Confidence 346799999876 45666677776654 78999999887777654 321 111111111333333322 24569
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
|+|+.+... .+....+.+.|+++|.++.-.
T Consensus 236 d~vl~~~~~----------~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 236 HAVVVTAVS----------AAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CEEEEcCCc----------hHHHHHHHHHhhcCCEEEEec
Confidence 999854432 335677889999999999743
No 476
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=84.63 E-value=0.96 Score=41.87 Aligned_cols=112 Identities=16% Similarity=0.098 Sum_probs=62.3
Q ss_pred CeEEEEeccccHHHHHHHhcC--------------------CccEEEEEECCH--HHHHHHHhhchhh-----------h
Q 037807 70 KKVLLIGGGDGGILREISRHA--------------------SVEQIHICEIDT--MLINVYKEYFPEI-----------A 116 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~~~--------------------~~~~v~~VEid~--~vi~~a~~~~~~~-----------~ 116 (299)
.+||.||||.|+-...++... +.-+|+.|||-+ .|++.....+... -
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999987555443321 013799999974 4666666555432 0
Q ss_pred --cCCCCCCEEEEEccHHHHHHhc-----CCCCccEEEEcCCCCCCCC-CCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 117 --IGYEDSRVILHVCDGSEYLKTV-----QSGTFDAIIIDAFDPIRPG-HDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 117 --~~~~~~rv~v~~~D~~~~l~~~-----~~~~fDvIi~D~~~~~~~~-~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
..-+.=++++.+.|....-.+. .....|+|.+-.+-..-.. ..--|..|+..+...+++|-+|.+
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLV 240 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLV 240 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEE
Confidence 0001224677888875432210 1123455543211110000 001147899999999999987665
No 477
>PRK08267 short chain dehydrogenase; Provisional
Probab=84.49 E-value=11 Score=33.05 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=45.0
Q ss_pred CeEEEEeccccHHHHHHHhcC--CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHH------HHhcC--
Q 037807 70 KKVLLIGGGDGGILREISRHA--SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEY------LKTVQ-- 139 (299)
Q Consensus 70 ~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~------l~~~~-- 139 (299)
++||+.|++ |++++.++++. ...+|..++.+++-++...+.+. ..++.++..|..+. +....
T Consensus 2 k~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 2 KSIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-------AGNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 468888865 56666655421 12578999988876665544332 24678888877532 22110
Q ss_pred -CCCccEEEEcCC
Q 037807 140 -SGTFDAIIIDAF 151 (299)
Q Consensus 140 -~~~fDvIi~D~~ 151 (299)
.++.|+||....
T Consensus 74 ~~~~id~vi~~ag 86 (260)
T PRK08267 74 TGGRLDVLFNNAG 86 (260)
T ss_pred cCCCCCEEEECCC
Confidence 356899998654
No 478
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=84.34 E-value=8.9 Score=35.80 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=58.4
Q ss_pred CCCeEEEEecc-ccHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCccE
Q 037807 68 NPKKVLLIGGG-DGGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~fDv 145 (299)
+..+||+.|+| .|..+..+++..+...|++++-++...+.+++ +.. +.-+.....+...-+.+. +.+.+|+
T Consensus 182 ~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~-~g~------~~vv~~~~~~~~~~l~~~~~~~~vd~ 254 (363)
T cd08279 182 PGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR-FGA------THTVNASEDDAVEAVRDLTDGRGADY 254 (363)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-hCC------eEEeCCCCccHHHHHHHHcCCCCCCE
Confidence 46789999654 24455566776666568999988888777754 221 011111112333333322 2356998
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
|+--... .+....+.+.|+++|.++.-
T Consensus 255 vld~~~~----------~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 255 AFEAVGR----------AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred EEEcCCC----------hHHHHHHHHHhhcCCeEEEE
Confidence 8733221 34567888999999998864
No 479
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=84.30 E-value=17 Score=31.77 Aligned_cols=79 Identities=13% Similarity=0.142 Sum_probs=47.2
Q ss_pred CCCeEEEEeccccHHHHHHHhcC--CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHH------HHHhc-
Q 037807 68 NPKKVLLIGGGDGGILREISRHA--SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSE------YLKTV- 138 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~------~l~~~- 138 (299)
..++||+.|+ +|++++.++++. ...+|++++.++.-.+...+.+... ..++.++..|..+ .+.+.
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ-----GLSAHALAFDVTDHDAVRAAIDAFE 82 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-----CceEEEEEccCCCHHHHHHHHHHHH
Confidence 3578999985 567777766521 1247899999887665444444321 2457777777643 12211
Q ss_pred -CCCCccEEEEcCCC
Q 037807 139 -QSGTFDAIIIDAFD 152 (299)
Q Consensus 139 -~~~~fDvIi~D~~~ 152 (299)
.-...|+||.....
T Consensus 83 ~~~~~~d~li~~ag~ 97 (255)
T PRK07523 83 AEIGPIDILVNNAGM 97 (255)
T ss_pred HhcCCCCEEEECCCC
Confidence 12568999986543
No 480
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=84.26 E-value=10 Score=34.78 Aligned_cols=98 Identities=13% Similarity=0.064 Sum_probs=56.8
Q ss_pred CCCCeEEEEeccccHHH---HHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHH----HHHHhcC
Q 037807 67 PNPKKVLLIGGGDGGIL---REISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGS----EYLKTVQ 139 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~---~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~----~~l~~~~ 139 (299)
.+..+||+.|+ |.++ ..+++..+...+++++-+++..+.++++-. . .-+.....+.. ...+...
T Consensus 160 ~~g~~VlI~g~--g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-~------~~i~~~~~~~~~~~~~~~~~~~ 230 (341)
T cd08262 160 TPGEVALVIGC--GPIGLAVIAALKARGVGPIVASDFSPERRALALAMGA-D------IVVDPAADSPFAAWAAELARAG 230 (341)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC-c------EEEcCCCcCHHHHHHHHHHHhC
Confidence 35678999964 4444 345565566668889989988888776421 0 00111111111 1112222
Q ss_pred CCCccEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEec
Q 037807 140 SGTFDAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQA 183 (299)
Q Consensus 140 ~~~fDvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~ 183 (299)
.+.+|+|+ |.... ...+..+.+.|+++|.++.-.
T Consensus 231 ~~~~d~vi-d~~g~---------~~~~~~~~~~l~~~g~~v~~g 264 (341)
T cd08262 231 GPKPAVIF-ECVGA---------PGLIQQIIEGAPPGGRIVVVG 264 (341)
T ss_pred CCCCCEEE-ECCCC---------HHHHHHHHHHhccCCEEEEEC
Confidence 45699888 43321 235777888999999988643
No 481
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.99 E-value=6.4 Score=35.82 Aligned_cols=93 Identities=10% Similarity=0.132 Sum_probs=52.6
Q ss_pred eEEEEeccccHHHH--HHHhcCCccEEEEEECCHHHHHHHHhh-chhhhcCCCCCCEEE---EEccHHHHHHhcCCCCcc
Q 037807 71 KVLLIGGGDGGILR--EISRHASVEQIHICEIDTMLINVYKEY-FPEIAIGYEDSRVIL---HVCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 71 ~VL~IG~G~G~~~~--~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~v---~~~D~~~~l~~~~~~~fD 144 (299)
+|++||+|.-+... .+.+. + .+|+.++. ++.++..++. +... . ......+ ...|. .+. .+.+|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-g-~~V~~~~r-~~~~~~~~~~g~~~~-~--~~~~~~~~~~~~~~~----~~~-~~~~d 70 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-G-RDVTFLVR-PKRAKALRERGLVIR-S--DHGDAVVPGPVITDP----EEL-TGPFD 70 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-C-CceEEEec-HHHHHHHHhCCeEEE-e--CCCeEEecceeecCH----HHc-cCCCC
Confidence 69999998755433 34443 2 46899998 6666655542 1110 0 0011111 01121 111 36799
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
+|++-..... ..+.++.+...+.++.+++.
T Consensus 71 ~vilavk~~~-------~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 71 LVILAVKAYQ-------LDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred EEEEEecccC-------HHHHHHHHHhhcCCCCEEEE
Confidence 9998765432 37778888888888776653
No 482
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=83.89 E-value=34 Score=32.83 Aligned_cols=108 Identities=16% Similarity=0.218 Sum_probs=58.4
Q ss_pred eEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhh-cCC----CCCCEEEEE-ccHHHHHHhcCCCCc
Q 037807 71 KVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIA-IGY----EDSRVILHV-CDGSEYLKTVQSGTF 143 (299)
Q Consensus 71 ~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-~~~----~~~rv~v~~-~D~~~~l~~~~~~~f 143 (299)
+|-+||.|- |.....++.. + -+|+++|+|++.++..++-..... ..+ ...+.++.. .|..+. -..-
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G-~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~-----~~~a 74 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-N-HEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA-----YRDA 74 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-C-CcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh-----hcCC
Confidence 578898883 3222223333 3 579999999999998887432210 000 001222221 111111 1346
Q ss_pred cEEEEcCCCCCCCCCCCCc----HHHHHHHHHhcCCCcEEEEecCCc
Q 037807 144 DAIIIDAFDPIRPGHDLFE----GPFFELVAKALRPGGAMCIQAESL 186 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t----~ef~~~~~~~LkpgGvlv~~~~s~ 186 (299)
|+|++..+.|.......+. .+.++.+.+ +++|.+++..+..+
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~ 120 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP 120 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence 9999988777432222222 344566666 77777777665443
No 483
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=83.81 E-value=2.6 Score=36.96 Aligned_cols=37 Identities=27% Similarity=0.501 Sum_probs=23.5
Q ss_pred hcccCCCCCCeEEEEeccccHHHHH--HHhcCCccEEEEEE
Q 037807 61 LPLCSIPNPKKVLLIGGGDGGILRE--ISRHASVEQIHICE 99 (299)
Q Consensus 61 ~~l~~~~~~~~VL~IG~G~G~~~~~--l~~~~~~~~v~~VE 99 (299)
+|+...-+.++||++|||+-+.-+. +++.. .+|+++-
T Consensus 4 lPl~~~l~~k~VlvvGgG~va~rKa~~ll~~g--a~v~Vvs 42 (210)
T COG1648 4 LPLFLDLEGKKVLVVGGGSVALRKARLLLKAG--ADVTVVS 42 (210)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEc
Confidence 4554444678999999998766443 34443 5566653
No 484
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=83.77 E-value=2.3 Score=42.87 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=69.8
Q ss_pred CCCCeEEEEeccccHHHHHHHh-cCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccH---------HHHHH
Q 037807 67 PNPKKVLLIGGGDGGILREISR-HASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDG---------SEYLK 136 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~---------~~~l~ 136 (299)
.+...||+|||..|+-..-..+ .|...-|++|||-|-- . -|++.-.++|. +.+++
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik------p---------~~~c~t~v~dIttd~cr~~l~k~l~ 107 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK------P---------IPNCDTLVEDITTDECRSKLRKILK 107 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc------c---------CCccchhhhhhhHHHHHHHHHHHHH
Confidence 3567899999999999887776 4545678899996631 1 12222222332 22333
Q ss_pred hcCCCCccEEEEcCCCCCCCC-------CCCCcHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhhc
Q 037807 137 TVQSGTFDAIIIDAFDPIRPG-------HDLFEGPFFELVAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRIF 204 (299)
Q Consensus 137 ~~~~~~fDvIi~D~~~~~~~~-------~~l~t~ef~~~~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~F 204 (299)
.-+.|+|+.|.....+.. ....+...++.....|..||.|++... .++.+..++..+.+.|
T Consensus 108 ---t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvf----rs~dy~~ll~v~~qLf 175 (780)
T KOG1098|consen 108 ---TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVF----RSEDYNGLLRVFGQLF 175 (780)
T ss_pred ---hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccc----cCCcchHHHHHHHHHH
Confidence 235699999976655432 122334556667788999999997542 2233334444444444
No 485
>PRK06194 hypothetical protein; Provisional
Probab=83.72 E-value=17 Score=32.49 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=45.2
Q ss_pred CCeEEEEeccccHHHHHHHhcC--CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHH--H----Hhc--
Q 037807 69 PKKVLLIGGGDGGILREISRHA--SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEY--L----KTV-- 138 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~--l----~~~-- 138 (299)
.++||+.|++ |++++++++.. ...+|++++.+++..+...+.+.. ...++.++.+|..+. + ...
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~~~ 79 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA-----QGAEVLGVRTDVSDAAQVEALADAALE 79 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh-----cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4678888855 56666655411 124799999987665544433322 134677788887432 1 111
Q ss_pred CCCCccEEEEcCC
Q 037807 139 QSGTFDAIIIDAF 151 (299)
Q Consensus 139 ~~~~fDvIi~D~~ 151 (299)
..+..|+|+....
T Consensus 80 ~~g~id~vi~~Ag 92 (287)
T PRK06194 80 RFGAVHLLFNNAG 92 (287)
T ss_pred HcCCCCEEEECCC
Confidence 1246899998654
No 486
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.67 E-value=15 Score=34.31 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=61.9
Q ss_pred CCCeEEEEeccccHHH-HHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGDGGIL-REISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+...|.+.|+|.=+++ .+-+|..+..+|++||++++-.+.|+++=... +=+|+ .+- .-..+.+.+..+.-+|.-
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe---~iNp~-d~~-~~i~evi~EmTdgGvDys 266 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATE---FINPK-DLK-KPIQEVIIEMTDGGVDYS 266 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcce---ecChh-hcc-ccHHHHHHHHhcCCceEE
Confidence 4567888888764443 34456668899999999999999999862110 11233 111 135566665545666665
Q ss_pred EEcCCCCCCCCCCCCcHHHHHHHHHhcCCC-cEEEE
Q 037807 147 IIDAFDPIRPGHDLFEGPFFELVAKALRPG-GAMCI 181 (299)
Q Consensus 147 i~D~~~~~~~~~~l~t~ef~~~~~~~Lkpg-Gvlv~ 181 (299)
+=-. + ..+.++++...-++| |.-++
T Consensus 267 fEc~----G------~~~~m~~al~s~h~GwG~sv~ 292 (375)
T KOG0022|consen 267 FECI----G------NVSTMRAALESCHKGWGKSVV 292 (375)
T ss_pred EEec----C------CHHHHHHHHHHhhcCCCeEEE
Confidence 5211 1 156777788888888 76554
No 487
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=83.62 E-value=14 Score=30.45 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=60.5
Q ss_pred CeEEEEeccccH--HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEE
Q 037807 70 KKVLLIGGGDGG--ILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAII 147 (299)
Q Consensus 70 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi 147 (299)
.+|-.||.|.=+ +++.|++.. -+|++.|.+++..+...+. .+ ....+..+.+++ .|+|+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g--~~v~~~d~~~~~~~~~~~~-----------g~-~~~~s~~e~~~~-----~dvvi 62 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAG--YEVTVYDRSPEKAEALAEA-----------GA-EVADSPAEAAEQ-----ADVVI 62 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTT--TEEEEEESSHHHHHHHHHT-----------TE-EEESSHHHHHHH-----BSEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcC--CeEEeeccchhhhhhhHHh-----------hh-hhhhhhhhHhhc-----ccceE
Confidence 368889987533 334444442 5799999999877765542 12 233555666653 49999
Q ss_pred EcCCCCCCCCCCCCcHHHHHH--HHHhcCCCcEEEEecCCcccchHHHHHHHHHHhhh
Q 037807 148 IDAFDPIRPGHDLFEGPFFEL--VAKALRPGGAMCIQAESLWFQQFSVQHLIDDCHRI 203 (299)
Q Consensus 148 ~D~~~~~~~~~~l~t~ef~~~--~~~~LkpgGvlv~~~~s~~~~~~~~~~~~~~l~~~ 203 (299)
+-.+++.. .++.+.. +...|++|.+++-.+ ...++..+++.+.+++.
T Consensus 63 ~~v~~~~~------v~~v~~~~~i~~~l~~g~iiid~s---T~~p~~~~~~~~~~~~~ 111 (163)
T PF03446_consen 63 LCVPDDDA------VEAVLFGENILAGLRPGKIIIDMS---TISPETSRELAERLAAK 111 (163)
T ss_dssp E-SSSHHH------HHHHHHCTTHGGGS-TTEEEEE-S---S--HHHHHHHHHHHHHT
T ss_pred eecccchh------hhhhhhhhHHhhccccceEEEecC---Ccchhhhhhhhhhhhhc
Confidence 98776421 2556666 777788776666432 23455566666666543
No 488
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=83.52 E-value=25 Score=32.53 Aligned_cols=104 Identities=14% Similarity=0.159 Sum_probs=52.2
Q ss_pred CeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhc-CCCCCCEEEE-EccHHHHHHhcCCCCccEE
Q 037807 70 KKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAI-GYEDSRVILH-VCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 70 ~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~-~~~~~rv~v~-~~D~~~~l~~~~~~~fDvI 146 (299)
.+|-+||+|. |.....++...+..+|+++|++++..+ ++.. ...+. .......++. ..|..+ + ..-|+|
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a~-d~~~~~~~~~~~~~i~~t~d~~~-~-----~~aDiV 73 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKAL-DMYEASPVGGFDTKVTGTNNYAD-T-----ANSDIV 73 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHHH-hhhhhhhccCCCcEEEecCCHHH-h-----CCCCEE
Confidence 4789999987 433333333322236999999877433 2221 11110 1111123343 356433 2 346999
Q ss_pred EEcCCCCCCCCCC---C--Cc----HHHHHHHHHhcCCCcEEEEe
Q 037807 147 IIDAFDPIRPGHD---L--FE----GPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 147 i~D~~~~~~~~~~---l--~t----~ef~~~~~~~LkpgGvlv~~ 182 (299)
|+-...|..+... | .. .++.+.+.+. .|++++++-
T Consensus 74 Iitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~-~p~~~iIv~ 117 (305)
T TIGR01763 74 VITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEH-SPNPIIVVV 117 (305)
T ss_pred EEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe
Confidence 9977665543211 1 12 2334444554 478877663
No 489
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=83.42 E-value=17 Score=33.32 Aligned_cols=90 Identities=19% Similarity=0.184 Sum_probs=55.6
Q ss_pred eEEEEeccccH--HHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEE
Q 037807 71 KVLLIGGGDGG--ILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIII 148 (299)
Q Consensus 71 ~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~ 148 (299)
+|-+||+|.-+ +++.+++.. .+|.+.|.+++.++.+++.-. .. ..+..+.... -..-|+|++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g--~~V~~~dr~~~~~~~l~~~g~-----------~~-~~s~~~~~~~--~~~~dvIi~ 65 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRG--HDCVGYDHDQDAVKAMKEDRT-----------TG-VANLRELSQR--LSAPRVVWV 65 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCC-----------cc-cCCHHHHHhh--cCCCCEEEE
Confidence 58899998633 445555542 578999999988776665210 00 1233343332 245699998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecC
Q 037807 149 DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAE 184 (299)
Q Consensus 149 D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~ 184 (299)
-.++. ...+.++.+...|++|-++ +..+
T Consensus 66 ~vp~~-------~~~~v~~~l~~~l~~g~iv-id~s 93 (298)
T TIGR00872 66 MVPHG-------IVDAVLEELAPTLEKGDIV-IDGG 93 (298)
T ss_pred EcCch-------HHHHHHHHHHhhCCCCCEE-EECC
Confidence 76654 1367788888888886554 4443
No 490
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=83.36 E-value=13 Score=34.28 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=49.9
Q ss_pred CCCeEEEEeccccHH-HHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEE-ccHHHHHHhcCCCCccE
Q 037807 68 NPKKVLLIGGGDGGI-LREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHV-CDGSEYLKTVQSGTFDA 145 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~fDv 145 (299)
.+++|++||.|.-+. +...++..+ .+|++++.++...+.+++. . .+.+. .+..+. -..+|+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~-G----------~~~~~~~~l~~~-----l~~aDi 213 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEM-G----------LSPFHLSELAEE-----VGKIDI 213 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-C----------CeeecHHHHHHH-----hCCCCE
Confidence 468999999875332 222334444 4899999998766655432 1 12111 122222 246899
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 146 IIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 146 Ii~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
||.-.+.. + +-+...+.++++++++-
T Consensus 214 VI~t~p~~------~----i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 214 IFNTIPAL------V----LTKEVLSKMPPEALIID 239 (296)
T ss_pred EEECCChh------h----hhHHHHHcCCCCcEEEE
Confidence 99754321 1 22445567888877664
No 491
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=83.36 E-value=17 Score=31.85 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=46.8
Q ss_pred CCeEEEEeccccHHHHHHHhcC--CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHH------HHhc--
Q 037807 69 PKKVLLIGGGDGGILREISRHA--SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEY------LKTV-- 138 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~------l~~~-- 138 (299)
.++||+.| |+|+++..++++. ...+|++++.++.-.+...+.+... ..++.++..|..+. +.+.
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-----~~~~~~~~~Dl~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL-----GIDALWIAADVADEADIERLAEETLE 85 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 46788888 5567777665421 1247899999887666555544321 34677777776431 1111
Q ss_pred CCCCccEEEEcCC
Q 037807 139 QSGTFDAIIIDAF 151 (299)
Q Consensus 139 ~~~~fDvIi~D~~ 151 (299)
..+..|+||....
T Consensus 86 ~~~~id~vi~~ag 98 (259)
T PRK08213 86 RFGHVDILVNNAG 98 (259)
T ss_pred HhCCCCEEEECCC
Confidence 1246899998654
No 492
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=83.28 E-value=13 Score=34.13 Aligned_cols=95 Identities=20% Similarity=0.180 Sum_probs=54.7
Q ss_pred CCCeEEEEeccccHHHH---HHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhc-CCCCc
Q 037807 68 NPKKVLLIGGGDGGILR---EISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTV-QSGTF 143 (299)
Q Consensus 68 ~~~~VL~IG~G~G~~~~---~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~f 143 (299)
...+||+.|+|+ ++. .+++..+..+|++++-+++-.+.++++ .. +.-+... .+..+-+.+. ....+
T Consensus 167 ~~~~vlI~g~~~--vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~-~~~~~~i~~~~~~~~~ 236 (340)
T cd05284 167 PGSTVVVIGVGG--LGHIAVQILRALTPATVIAVDRSEEALKLAERL-GA------DHVLNAS-DDVVEEVRELTGGRGA 236 (340)
T ss_pred CCCEEEEEcCcH--HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHh-CC------cEEEcCC-ccHHHHHHHHhCCCCC
Confidence 467899998543 444 344544435688888888877777553 21 0000101 1111222222 23469
Q ss_pred cEEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEe
Q 037807 144 DAIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQ 182 (299)
Q Consensus 144 DvIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~ 182 (299)
|+|+--... ....+.+.+.|+++|.++.-
T Consensus 237 dvvld~~g~----------~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 237 DAVIDFVGS----------DETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred CEEEEcCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 999843221 34677888999999998864
No 493
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=83.00 E-value=20 Score=33.69 Aligned_cols=106 Identities=14% Similarity=0.149 Sum_probs=58.6
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEE
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAI 146 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvI 146 (299)
+..+||+.|+|. |..+..+++..+...|++++.+++-.+.+++.-.. -+.....+..+.+.+...+.+|+|
T Consensus 176 ~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~--------~v~~~~~~~~~~i~~~~~~~~d~v 247 (375)
T cd08282 176 PGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI--------PIDFSDGDPVEQILGLEPGGVDRA 247 (375)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCe--------EeccCcccHHHHHHHhhCCCCCEE
Confidence 467888866542 33344556665655788899999888887763210 011111233344443223568988
Q ss_pred EEcCCCCCC-CCCCCCcHHHHHHHHHhcCCCcEEEE
Q 037807 147 IIDAFDPIR-PGHDLFEGPFFELVAKALRPGGAMCI 181 (299)
Q Consensus 147 i~D~~~~~~-~~~~l~t~ef~~~~~~~LkpgGvlv~ 181 (299)
+--...+.. ....-.....+..+.+.|+++|.++.
T Consensus 248 ~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 248 VDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred EECCCCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 753221100 00000113357788899999999865
No 494
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=82.95 E-value=8.1 Score=35.79 Aligned_cols=71 Identities=20% Similarity=0.162 Sum_probs=39.0
Q ss_pred CCeEEEEeccc-cHH-HHHHHhcCCccEEEEEECCHHHH--HHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCcc
Q 037807 69 PKKVLLIGGGD-GGI-LREISRHASVEQIHICEIDTMLI--NVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFD 144 (299)
Q Consensus 69 ~~~VL~IG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi--~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fD 144 (299)
..+|.+||+|. |.. ...+.+.+..+-+-++|+|++.- +.++++ .+.....|....+....-...|
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~-----------Gi~~~~~~ie~LL~~~~~~dID 72 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL-----------GVATSAEGIDGLLAMPEFDDID 72 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc-----------CCCcccCCHHHHHhCcCCCCCC
Confidence 46899999887 433 33444555555555789998643 444432 1222234444455421014578
Q ss_pred EEEEcC
Q 037807 145 AIIIDA 150 (299)
Q Consensus 145 vIi~D~ 150 (299)
+|+.-.
T Consensus 73 iVf~AT 78 (302)
T PRK08300 73 IVFDAT 78 (302)
T ss_pred EEEECC
Confidence 777543
No 495
>PRK08507 prephenate dehydrogenase; Validated
Probab=82.91 E-value=6.4 Score=35.58 Aligned_cols=89 Identities=15% Similarity=0.118 Sum_probs=52.1
Q ss_pred eEEEEeccc--cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHHHHHhcCCCCccEEEE
Q 037807 71 KVLLIGGGD--GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSEYLKTVQSGTFDAIII 148 (299)
Q Consensus 71 ~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~fDvIi~ 148 (299)
+|.+||+|. |.+++.+.+.....+|+++|.+++..+.+++. .. ... ..+..+ + .+ .|+||+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~-g~---------~~~-~~~~~~-~----~~-aD~Vil 64 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL-GL---------VDE-IVSFEE-L----KK-CDVIFL 64 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC-CC---------Ccc-cCCHHH-H----hc-CCEEEE
Confidence 688999875 34455555443224789999999887766542 10 000 112222 1 22 799998
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCC
Q 037807 149 DAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAES 185 (299)
Q Consensus 149 D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s 185 (299)
-.+... ..+++..+.. ++++.++ +..++
T Consensus 65 avp~~~-------~~~~~~~l~~-l~~~~iv-~d~gs 92 (275)
T PRK08507 65 AIPVDA-------IIEILPKLLD-IKENTTI-IDLGS 92 (275)
T ss_pred eCcHHH-------HHHHHHHHhc-cCCCCEE-EECcc
Confidence 765532 2566777777 7776644 44544
No 496
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=82.87 E-value=2.7 Score=40.22 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=33.3
Q ss_pred CCCCeEEEEeccccHHHHHHHhcCCccEEEEEECCHHHHHHHHh
Q 037807 67 PNPKKVLLIGGGDGGILREISRHASVEQIHICEIDTMLINVYKE 110 (299)
Q Consensus 67 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~ 110 (299)
.+..+||.|.+|+..++..+++.| ++|++||+||.-..+.+-
T Consensus 34 ~~~d~vl~ItSaG~N~L~yL~~~P--~~I~aVDlNp~Q~aLleL 75 (380)
T PF11899_consen 34 GPDDRVLTITSAGCNALDYLLAGP--KRIHAVDLNPAQNALLEL 75 (380)
T ss_pred CCCCeEEEEccCCchHHHHHhcCC--ceEEEEeCCHHHHHHHHH
Confidence 456789999988766666666665 789999999998887764
No 497
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=82.86 E-value=19 Score=31.29 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=46.8
Q ss_pred CCeEEEEeccccHHHHHHHhcC--CccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEccHHH------HHHhc--
Q 037807 69 PKKVLLIGGGDGGILREISRHA--SVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVCDGSE------YLKTV-- 138 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~------~l~~~-- 138 (299)
.++||+.|+ +|.++++++++. ...+|.+++.++.-.+...+.+.. ...++.++..|..+ .+...
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK-----AGGKAIGVAMDVTDEEAINAGIDYAVE 77 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 357888875 567777776531 124789999988766554443332 13578888887642 11111
Q ss_pred CCCCccEEEEcCC
Q 037807 139 QSGTFDAIIIDAF 151 (299)
Q Consensus 139 ~~~~fDvIi~D~~ 151 (299)
..+..|+||....
T Consensus 78 ~~~~~d~vi~~a~ 90 (258)
T PRK12429 78 TFGGVDILVNNAG 90 (258)
T ss_pred HcCCCCEEEECCC
Confidence 1246899998654
No 498
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=82.84 E-value=17 Score=34.28 Aligned_cols=99 Identities=15% Similarity=0.058 Sum_probs=53.6
Q ss_pred CCCeEEEEeccc-cHHHHHHHhcCCccEEEEEECCHHHHHHHHhhchhhhcCCCCCCEEEEEc--cHHHHHHhcCCCCcc
Q 037807 68 NPKKVLLIGGGD-GGILREISRHASVEQIHICEIDTMLINVYKEYFPEIAIGYEDSRVILHVC--DGSEYLKTVQSGTFD 144 (299)
Q Consensus 68 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~v~~~--D~~~~l~~~~~~~fD 144 (299)
...+||++|+|. |..+..+++..+..+|++++.+++-.+.+++ +.. +.-+..... +..+.+.+...+.+|
T Consensus 190 ~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~-lGa------~~~i~~~~~~~~~~~~v~~~~~~~~d 262 (373)
T cd08299 190 PGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKE-LGA------TECINPQDYKKPIQEVLTEMTDGGVD 262 (373)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCC------ceEecccccchhHHHHHHHHhCCCCe
Confidence 457899996542 2223444555555579999999988888855 321 111111111 133333332234689
Q ss_pred EEEEcCCCCCCCCCCCCcHHHHHH-HHHhcCCCcEEEEec
Q 037807 145 AIIIDAFDPIRPGHDLFEGPFFEL-VAKALRPGGAMCIQA 183 (299)
Q Consensus 145 vIi~D~~~~~~~~~~l~t~ef~~~-~~~~LkpgGvlv~~~ 183 (299)
+|+- .... ...+.. +...++++|.++.-.
T Consensus 263 ~vld-~~g~---------~~~~~~~~~~~~~~~G~~v~~g 292 (373)
T cd08299 263 FSFE-VIGR---------LDTMKAALASCHEGYGVSVIVG 292 (373)
T ss_pred EEEE-CCCC---------cHHHHHHHHhhccCCCEEEEEc
Confidence 8763 2221 234455 444567889888653
No 499
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=82.81 E-value=17 Score=32.72 Aligned_cols=112 Identities=12% Similarity=0.199 Sum_probs=65.2
Q ss_pred CCeEEEEeccccHHHHHHHhcCCccEEEEEECC-HHHHHHHHhhchhhhcCCCCCCEEEEEccHHH-HHHhcCCCCcc--
Q 037807 69 PKKVLLIGGGDGGILREISRHASVEQIHICEID-TMLINVYKEYFPEIAIGYEDSRVILHVCDGSE-YLKTVQSGTFD-- 144 (299)
Q Consensus 69 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid-~~vi~~a~~~~~~~~~~~~~~rv~v~~~D~~~-~l~~~~~~~fD-- 144 (299)
...|++||||-=.-+..+. .+ ..+..+|+| |++++.=++.++..+. ....+.+++..|..+ |........||
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~-~~--~~~~~~EvD~P~v~~~K~~~l~~~~~-~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLP-WP--DGTRVFEVDQPAVLAFKEKVLAELGA-EPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred CcEEEEeCCccccHHHhcC-CC--CCCeEEECCChHHHHHHHHHHHHcCC-CCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 5679999999776666552 22 247889999 6677766666664321 124678888888752 33322122232
Q ss_pred ---EEEEcCCCCCCCCCCCCcHHHHHHHHHhcCCCcEEEEecCCc
Q 037807 145 ---AIIIDAFDPIRPGHDLFEGPFFELVAKALRPGGAMCIQAESL 186 (299)
Q Consensus 145 ---vIi~D~~~~~~~~~~l~t~ef~~~~~~~LkpgGvlv~~~~s~ 186 (299)
++++..-...-+.. -...+++.+.+...||+.+++...++
T Consensus 158 ~ptl~i~EGvl~YL~~~--~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEE--AVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred CCeeeeecchhhcCCHH--HHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 33322111100000 02457777877777999999876444
No 500
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=82.71 E-value=17 Score=33.34 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=35.8
Q ss_pred cCeeeccCcchhhHHHHHHhhcccCCCCCCeEEEEeccccHHHHHH-HhcCCccEEEEEECCHHHHHHHHh
Q 037807 41 DGALQLTEKDECAYQEMITHLPLCSIPNPKKVLLIGGGDGGILREI-SRHASVEQIHICEIDTMLINVYKE 110 (299)
Q Consensus 41 dg~~q~~~~de~~Y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l-~~~~~~~~v~~VEid~~vi~~a~~ 110 (299)
||.+.-..-|..-+.+.+..... ..+.++||+||+|+-+-+... +...++.+|+.++.+++..+.+++
T Consensus 98 ~g~l~G~NTD~~Gf~~~l~~~~~--~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~ 166 (288)
T PRK12749 98 DGYLRGYNTDGTGHIRAIKESGF--DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA 166 (288)
T ss_pred CCEEEEEecCHHHHHHHHHhcCC--CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHH
Confidence 44443333443333444443211 134579999998754333222 223367899999998643333333
Done!