BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037810
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 80 LAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLL 139
L +L IG I F + + + D I D+ ++ VV+MT +G+GD++P ++ K++
Sbjct: 346 LIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIV 405
Query: 140 --VCA 142
+CA
Sbjct: 406 GSLCA 410
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 214 AVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYV 273
+F T++ + +DA+ S T+TT+G GD S G+IF + +I I I L F++
Sbjct: 22 TIFYSTVEGLRPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIG-IGLVFGFIHK 80
Query: 274 AELNIE 279
+N++
Sbjct: 81 LAVNVQ 86
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 87 GTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLT 146
GTI FY S ++G++ ID++YF VVT+T +G GD P + K+ ++
Sbjct: 21 GTI-FY---STVEGLRP-------IDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFI 69
Query: 147 GM 148
G+
Sbjct: 70 GI 71
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 214 AVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYV 273
+F T++ + +DA+ S T+TT+G GD S G+IF + +I I I L F++
Sbjct: 22 TIFYSTVEGLRPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIG-IGLVFGFIHK 80
Query: 274 AELNIE 279
+N++
Sbjct: 81 LAVNVQ 86
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 11/62 (17%)
Query: 87 GTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLT 146
GTI FY S ++G++ ID+++F VVT+T +G+GD P + K+ ++
Sbjct: 21 GTI-FY---STVEGLRP-------IDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFI 69
Query: 147 GM 148
G+
Sbjct: 70 GI 71
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 80 LAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLL 139
L +L IG I F + + + D I D+ ++ VV+MT +G+GD++P ++ K++
Sbjct: 346 LIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIV 405
Query: 140 --VCA 142
+CA
Sbjct: 406 GSLCA 410
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 214 AVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYV 273
+F T++ + +DA+ S T+TT+G GD S G+IF + +I I I L F++
Sbjct: 22 TIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIG-IGLVFGFIHK 80
Query: 274 AELNIE 279
+N++
Sbjct: 81 LAVNVQ 86
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 11/62 (17%)
Query: 87 GTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLT 146
GTI FY S ++G++ ID++YF VVT+T +G+GD P + K+ ++
Sbjct: 21 GTI-FY---STVEGLRP-------IDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFI 69
Query: 147 GM 148
G+
Sbjct: 70 GI 71
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 80 LAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLL 139
L +L IG I F + + + D I D+ ++ VV+MT +G+GD++P ++ K++
Sbjct: 331 LIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIV 390
Query: 140 --VCA 142
+CA
Sbjct: 391 GSLCA 395
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 80 LAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLL 139
L +L IG I F + + + D I D+ ++ VV+MT +G+GD++P ++ K++
Sbjct: 331 LIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIV 390
Query: 140 --VCA 142
+CA
Sbjct: 391 GSLCA 395
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 213 SAVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLY 272
+F T++ + +DA+ S T+TT+G GD S G+IF + +I I I L F++
Sbjct: 21 GTIFYSTVEGLRPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIG-IGLVFGFIH 79
Query: 273 VAELNIE 279
+N++
Sbjct: 80 KLAVNVQ 86
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 11/62 (17%)
Query: 87 GTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLT 146
GTI FY S ++G++ ID+++F VVT+T +G+GD P + K+ ++
Sbjct: 21 GTI-FY---STVEGLRP-------IDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFI 69
Query: 147 GM 148
G+
Sbjct: 70 GI 71
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 213 SAVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLY 272
+F T++ + +DA+ S T+TT+G GD S G+IF + +I I I L F++
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIG-IGLVFGFIH 79
Query: 273 VAELNIE 279
+N++
Sbjct: 80 KLAVNVQ 86
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 87 GTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLT 146
GTI FY S ++G++ ID++YF VVT+T +G GD P + K+ ++
Sbjct: 21 GTI-FY---STVEGLRP-------IDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFI 69
Query: 147 GM 148
G+
Sbjct: 70 GI 71
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 214 AVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYV 273
+F T++ + +DA+ S T+TT+G G+ S G+IF + +I I I L F++
Sbjct: 22 TIFYSTVEGLRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIG-IGLVFGFIHK 80
Query: 274 AELNIE 279
+N++
Sbjct: 81 LAVNVQ 86
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 11/62 (17%)
Query: 87 GTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLT 146
GTI FY S ++G++ ID++YF VVT+T +G+G+ P + K+ ++
Sbjct: 21 GTI-FY---STVEGLRP-------IDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFI 69
Query: 147 GM 148
G+
Sbjct: 70 GI 71
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 214 AVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYV 273
+F T++ + +DA+ S T+TT+G G+ S G+IF + +I I I L F++
Sbjct: 22 TIFYSTVEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIG-IGLVFGFIHK 80
Query: 274 AELNIE 279
+N++
Sbjct: 81 LAVNVQ 86
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 11/62 (17%)
Query: 87 GTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLT 146
GTI FY S ++G++ ID++YF VVT+T +G+G+ P + K+ ++
Sbjct: 21 GTI-FY---STVEGLRP-------IDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFI 69
Query: 147 GM 148
G+
Sbjct: 70 GI 71
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 214 AVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYV 273
+F T++ + +DA+ S T+TT+G G+ S G+IF + +I I I L F++
Sbjct: 39 TIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIG-IGLVFGFIHK 97
Query: 274 AELNIE 279
+N++
Sbjct: 98 LAVNVQ 103
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 87 GTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLT 146
GTI FY S ++G++ ID++YF VVT+T +G G+ P + K+ ++
Sbjct: 38 GTI-FY---STVEGLRP-------IDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFI 86
Query: 147 GM 148
G+
Sbjct: 87 GI 88
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 213 SAVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLY 272
+F T++ + +DA+ S T+TT+G G+ S G+IF + +I I I L F++
Sbjct: 20 GTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIG-IGLVFGFIH 78
Query: 273 VAELNIE 279
+N++
Sbjct: 79 KLAVNVQ 85
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 87 GTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLT 146
GTI FY S ++G++ ID++YF VVT+T +G G+ P + K+ ++
Sbjct: 20 GTI-FY---STVEGLRP-------IDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFI 68
Query: 147 GM 148
G+
Sbjct: 69 GI 70
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 214 AVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYV 273
+F T++ + +DA+ S T+TT+G G+ S G+IF + +I I I L F++
Sbjct: 39 TIFYSTVEGLRPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIG-IGLVFGFIHK 97
Query: 274 AELNIE 279
+N++
Sbjct: 98 LAVNVQ 103
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 11/62 (17%)
Query: 87 GTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLT 146
GTI FY S ++G++ ID++YF VVT+T +G+G+ P + K+ ++
Sbjct: 38 GTI-FY---STVEGLRP-------IDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFI 86
Query: 147 GM 148
G+
Sbjct: 87 GI 88
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 214 AVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYV 273
+F T++ + +DA+ S T+TT+G G+ S G+IF + +I I I L F++
Sbjct: 39 TIFYSTVEGLRPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIG-IGLVFGFIHK 97
Query: 274 AELNIE 279
+N++
Sbjct: 98 LAVNVQ 103
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 87 GTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLT 146
GTI FY S ++G++ ID++YF VVT+T +G G+ P + K+ ++
Sbjct: 38 GTI-FY---STVEGLRP-------IDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFI 86
Query: 147 GM 148
G+
Sbjct: 87 GI 88
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 214 AVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYV 273
+F T++ + +DA+ S T+TT+G G+ G+IF + +I I I L F++
Sbjct: 39 TIFYSTVEGLRPIDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIG-IGLVFGFIHK 97
Query: 274 AELNIE 279
+N++
Sbjct: 98 LAVNVQ 103
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 87 GTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLT 146
GTI FY S ++G++ ID++YF VVT+T +G G+ P + K+ ++
Sbjct: 38 GTI-FY---STVEGLRP-------IDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFI 86
Query: 147 GM 148
G+
Sbjct: 87 GI 88
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 29/39 (74%)
Query: 110 IIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
+ D++++ VVT T +G+GD++P + + K++ A +LTG+
Sbjct: 178 VFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGI 216
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 225 VVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLL 269
V DA+ + T TT+G GD+ + G++ + +L +LTLL
Sbjct: 178 VFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLL 222
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 214 AVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYV 273
+F T++ + +DA+ S T+TT+G G+ S G++F + +I I I L F++
Sbjct: 42 TIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIG-IGLVFGFIHK 100
Query: 274 AELNIE 279
+N++
Sbjct: 101 LAVNVQ 106
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 77 VVFLAIYLGI--GTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSV 134
V+F+ +L + GTI FY S ++G++ +D++YF VVT+T +G G+ P +
Sbjct: 29 VLFVLTFLTLTSGTI-FY---STVEGLRP-------LDALYFSVVTLTTVGDGNFSPQTD 77
Query: 135 LSKLLVCAFVLTGM 148
K+ ++ G+
Sbjct: 78 FGKVFTILYIFIGI 91
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 214 AVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYV 273
+F T++ + +DA+ S T+TT+G G+ S G+IF + +I I I L F++
Sbjct: 39 TIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIG-IGLVFGFIHK 97
Query: 274 AELNIE 279
+N++
Sbjct: 98 LAVNVQ 103
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 87 GTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLT 146
GTI FY S ++G++ ID++YF VVT+T +G G+ P + K+ ++
Sbjct: 38 GTI-FY---STVEGLRP-------IDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFI 86
Query: 147 GM 148
G+
Sbjct: 87 GI 88
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 29/39 (74%)
Query: 110 IIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
+ D++++ VVT T +G+GD++P + + K++ A +LTG+
Sbjct: 166 VFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGI 204
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 225 VVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLL 269
V DA+ + T TT+G GD+ + G++ + +L +LTLL
Sbjct: 166 VFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLL 210
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 68 IRRPNTRKAVVFL-AIYLGIGTI-CFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIG 125
IR +++ V + A+ LG T+ CF+ + + + + D ++S YFC ++++ IG
Sbjct: 160 IRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDW--NFLESFYFCFISLSTIG 217
Query: 126 HGDLMPNS 133
GD +P
Sbjct: 218 LGDYVPGE 225
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 109 GIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
G + + +F V T+ +G+GD+ P +V + + + GM
Sbjct: 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGM 135
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 109 GIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
G + + +F V T+ +G+GD+ P +V + + + GM
Sbjct: 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGM 135
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 92 YAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
Y ++ I+ K I ++++ VVT++ G+GD +P S ++L A +++G+
Sbjct: 148 YVIERDIQPEK----FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGI 200
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 33.1 bits (74), Expect = 0.17, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Query: 71 PNTRKAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLM 130
P TR ++ LA+ + GT F+ ++ + + S+Y+ VT+ A+G+GD
Sbjct: 2 PATRILLLVLAVII-YGTAGFHFIEGESWTV-----------SLYWTFVTIAAVGYGDYS 49
Query: 131 PNSVLSKLLVCAFVLTGM 148
P++ L C ++ G+
Sbjct: 50 PHTPLGMYFTCTLIVLGI 67
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 26/37 (70%)
Query: 112 DSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
D++++ +VT T +G+GD++P + + ++L +L G+
Sbjct: 46 DALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGI 82
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 32.3 bits (72), Expect = 0.33, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 68 IRRPNTRKAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHG 127
++ P TR ++ LA+ + GT F+ ++ + + S+Y+ VT+ +G+G
Sbjct: 6 LKVPATRILLLVLAVII-YGTAGFHFIEGESWTV-----------SLYWTFVTIATVGYG 53
Query: 128 DLMPNSVLSKLLVCAFVLTGM 148
D P++ L C ++ G+
Sbjct: 54 DYSPHTPLGMYFTCTLIVLGI 74
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 112 DSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
D+ +F V TM IG+G L+P L+ LV L GM
Sbjct: 85 DAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 112 DSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
D+ +F V TM IG+G L+P L+ LV L GM
Sbjct: 85 DAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 112 DSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
D+ +F V TM IG+G L+P L+ LV L GM
Sbjct: 85 DAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 112 DSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
D+ +F V TM IG+G L+P L+ LV L GM
Sbjct: 85 DAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 112 DSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
D+ +F V TM IG+G L+P L+ LV L GM
Sbjct: 85 DAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 112 DSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
D+ +F V TM IG+G L+P L+ LV L GM
Sbjct: 85 DAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 31.6 bits (70), Expect = 0.53, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 71 PNTRKAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLM 130
P TR ++ LA+ + GT F+ ++ + + S+Y+ VT+ +G+GD
Sbjct: 2 PATRILLLVLAVII-YGTAGFHFIEGESWTV-----------SLYWTFVTIATVGYGDYS 49
Query: 131 PNSVLSKLLVCAFVLTGM 148
P++ L C ++ G+
Sbjct: 50 PHTPLGMYFTCTLIVLGI 67
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 31.6 bits (70), Expect = 0.54, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 71 PNTRKAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLM 130
P TR ++ LA+ + GT F+ ++ + + S+Y+ VT+ +G+GD
Sbjct: 2 PATRILLLVLAVII-YGTAGFHFIEGESWTV-----------SLYWTFVTIATVGYGDYS 49
Query: 131 PNSVLSKLLVCAFVLTGM 148
P++ L C ++ G+
Sbjct: 50 PHTPLGMYFTCTLIVLGI 67
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 214 AVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSE-GRIFAVYWILISCISLTLLFLY 272
+F T++ + +DA+ S T+TT GD +++ G+IF + +I I I L F++
Sbjct: 22 TIFYSTVEGLRPIDALYFSVVTLTT--VGDTPPPQTDFGKIFTILYIFIG-IGLVFGFIH 78
Query: 273 VAELNIE 279
+N++
Sbjct: 79 KLAVNVQ 85
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 31.2 bits (69), Expect = 0.73, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 71 PNTRKAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLM 130
P TR ++ LA+ + GT F+ ++ + + S+Y+ VT+ +G+GD
Sbjct: 2 PATRILLLVLAVII-YGTAGFHFIEGESWTV-----------SLYWTFVTIATVGYGDYS 49
Query: 131 PNSVLSKLLVCAFVLTGM 148
P + L C ++ G+
Sbjct: 50 PRTPLGMYFTCTLIVLGI 67
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 109 GIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
G + +F V T+ +G+GD+ P +V + + + GM
Sbjct: 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGM 117
>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K06|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K08|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
pdb|3K08|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
Length = 96
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 214 AVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYV 273
+F T++ + +DA+ S T+TT+G G+IF + +I I I L F++
Sbjct: 22 TIFYSTVEGLRPIDALYFSVVTLTTVGNTPPP-QTDFGKIFTILYIFIG-IGLVFGFIHK 79
Query: 274 AELNIE 279
+N++
Sbjct: 80 LAVNVQ 85
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 12/62 (19%)
Query: 87 GTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLT 146
GTI FY S ++G++ ID++YF VVT+T +G+ P + K+ ++
Sbjct: 21 GTI-FY---STVEGLRP-------IDALYFSVVTLTTVGNTP-PPQTDFGKIFTILYIFI 68
Query: 147 GM 148
G+
Sbjct: 69 GI 70
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 113 SVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
++++ V T T +G+GDL P ++ +L+ ++ G+
Sbjct: 44 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGI 79
>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0D|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0G|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
pdb|3K0G|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
Length = 96
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 214 AVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYV 273
+F T++ + +DA+ S T+TT+G G+IF + +I I I L F++
Sbjct: 22 TIFYSTVEGLRPIDALYFSVVTLTTVGETPPP-QTDFGKIFTILYIFIG-IGLVFGFIHK 79
Query: 274 AELNIE 279
+N++
Sbjct: 80 LAVNVQ 85
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 113 SVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
++++ V T T +G+GDL P ++ +L+ ++ G+
Sbjct: 72 ALWWSVATATTVGYGDLYPVTLWGRLVAVVVMVAGI 107
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 113 SVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
++++ V T T +G+GDL P ++ +L+ ++ G+
Sbjct: 71 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGI 106
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 71 PNTRKAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLM 130
P TR ++ LA+ + GT F+ ++ + + S+Y+ VT+ +G+GD
Sbjct: 19 PATRILLLVLAVII-YGTAGFHFIEGESWTV-----------SLYWTFVTIATVGYGDYS 66
Query: 131 PNSVLSKLLVCAFVLTGM 148
P++ L ++ G+
Sbjct: 67 PSTPLGMYFTVTLIVLGI 84
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 71 PNTRKAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLM 130
P TR ++ LA+ + GT F+ ++ + + S+Y+ VT+ +G+GD
Sbjct: 19 PATRILLLVLAVII-YGTAGFHFIEGESWTV-----------SLYWTFVTIATVGYGDYS 66
Query: 131 PNSVLSKLLVCAFVLTGM 148
P++ L ++ G+
Sbjct: 67 PSTPLGMYFTVTLIVLGI 84
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 112 DSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
D++++ V T T +G+GDL P ++ + + ++ G+
Sbjct: 87 DALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 123
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 223 MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILIS 262
D+ A S ITT+G G+++ GR+F +++ L+
Sbjct: 114 WDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVG 153
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 111 IDSVYFCVVTMTAIGHGDLMP------NSVLSKLLVCAFVLTGM 148
++++YF +VT+T +G GD + +S + LV ++L G+
Sbjct: 226 LEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGL 269
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 113 SVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
++++ V T T +G+GDL P ++ +L+ ++ G+
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGI 100
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 113 SVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
++++ V+T T +G+GDL P ++ + + ++ G+
Sbjct: 44 ALWWSVITATTVGYGDLYPVTLWGRCVAVVVMVAGI 79
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 113 SVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
++++ V T T +G+GDL P ++ +L+ ++ G+
Sbjct: 43 ALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGI 78
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 113 SVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
++++ V T T +G+GDL P ++ +L+ ++ G+
Sbjct: 44 ALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGI 79
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 113 SVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148
++++ V T T +G+GDL P ++ +L+ ++ G+
Sbjct: 65 ALWWSVETATCVGYGDLYPVTLWGRLVAVVVMVAGI 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,903,523
Number of Sequences: 62578
Number of extensions: 233553
Number of successful extensions: 381
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 88
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)