Query 037810
Match_columns 282
No_of_seqs 365 out of 2376
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:35:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4404 Tandem pore domain K+ 100.0 2.3E-35 4.9E-40 258.3 16.9 196 73-278 9-248 (350)
2 KOG1418 Tandem pore domain K+ 100.0 2.7E-28 5.9E-33 228.8 12.0 165 106-271 112-297 (433)
3 KOG3713 Voltage-gated K+ chann 99.7 5.4E-16 1.2E-20 144.0 11.0 98 68-166 337-437 (477)
4 PF07885 Ion_trans_2: Ion chan 99.6 1.1E-16 2.5E-21 116.4 1.9 72 208-279 5-79 (79)
5 PF07885 Ion_trans_2: Ion chan 99.6 3E-15 6.4E-20 109.0 5.3 76 80-164 3-78 (79)
6 KOG1419 Voltage-gated K+ chann 99.4 2.5E-13 5.5E-18 127.1 8.6 69 86-154 246-314 (654)
7 KOG1545 Voltage-gated shaker-l 99.4 1.3E-13 2.8E-18 123.3 4.5 95 68-163 353-450 (507)
8 KOG3713 Voltage-gated K+ chann 99.2 1.3E-11 2.8E-16 115.1 7.4 66 213-278 359-431 (477)
9 KOG1419 Voltage-gated K+ chann 99.2 3.8E-12 8.2E-17 119.3 3.1 81 198-278 232-323 (654)
10 PRK10537 voltage-gated potassi 99.2 1.5E-10 3.2E-15 108.4 10.9 59 106-165 165-223 (393)
11 PRK10537 voltage-gated potassi 99.2 3.3E-11 7.1E-16 112.8 5.2 71 209-279 147-223 (393)
12 PLN03192 Voltage-dependent pot 99.1 9E-11 2E-15 119.9 6.5 56 109-165 250-305 (823)
13 KOG4390 Voltage-gated A-type K 99.1 4.1E-11 8.9E-16 108.4 1.8 96 69-165 317-415 (632)
14 KOG1545 Voltage-gated shaker-l 99.0 2.2E-10 4.8E-15 102.8 4.6 47 223-269 392-438 (507)
15 KOG1418 Tandem pore domain K+ 99.0 4.1E-10 8.9E-15 105.6 6.5 57 223-279 114-170 (433)
16 KOG4404 Tandem pore domain K+ 99.0 1.2E-09 2.6E-14 96.9 7.0 56 223-278 79-134 (350)
17 PLN03192 Voltage-dependent pot 98.8 3.9E-09 8.4E-14 108.0 3.2 55 225-279 251-305 (823)
18 KOG1420 Ca2+-activated K+ chan 98.7 1.5E-08 3.2E-13 96.0 6.1 84 197-280 248-344 (1103)
19 KOG1420 Ca2+-activated K+ chan 98.7 1.7E-08 3.6E-13 95.6 6.1 86 77-164 255-342 (1103)
20 KOG3684 Ca2+-activated K+ chan 98.6 5.2E-08 1.1E-12 90.2 5.5 86 75-165 257-342 (489)
21 KOG0498 K+-channel ERG and rel 98.6 1.1E-07 2.4E-12 94.3 7.2 55 110-165 295-349 (727)
22 KOG4390 Voltage-gated A-type K 98.4 5.5E-08 1.2E-12 88.4 -1.0 61 210-270 335-402 (632)
23 KOG3193 K+ channel subunit [In 98.2 2.5E-06 5.4E-11 80.8 6.9 59 223-281 216-274 (1087)
24 KOG3193 K+ channel subunit [In 98.1 1.3E-05 2.9E-10 76.0 8.6 59 109-168 217-275 (1087)
25 KOG3684 Ca2+-activated K+ chan 98.1 1.2E-06 2.5E-11 81.4 1.6 77 201-277 256-340 (489)
26 PF01007 IRK: Inward rectifier 97.9 1.9E-05 4.1E-10 72.6 5.8 55 108-163 83-139 (336)
27 KOG0501 K+-channel KCNQ [Inorg 97.9 4.8E-05 1E-09 72.8 8.2 55 110-165 424-478 (971)
28 KOG0498 K+-channel ERG and rel 97.9 4.4E-06 9.5E-11 83.1 1.2 53 226-278 296-348 (727)
29 KOG0501 K+-channel KCNQ [Inorg 97.4 0.00013 2.8E-09 70.0 3.4 57 223-279 422-478 (971)
30 PF01007 IRK: Inward rectifier 97.2 0.00012 2.5E-09 67.4 0.9 55 223-277 83-139 (336)
31 TIGR00933 2a38 potassium uptak 96.6 0.0031 6.7E-08 59.4 4.9 166 81-262 205-389 (390)
32 PF00520 Ion_trans: Ion transp 96.5 0.0021 4.6E-08 53.2 3.3 52 106-158 142-199 (200)
33 KOG3827 Inward rectifier K+ ch 96.5 0.025 5.4E-07 52.1 10.2 51 108-159 111-163 (400)
34 KOG0500 Cyclic nucleotide-gate 96.4 0.0076 1.6E-07 57.1 6.1 55 109-165 183-237 (536)
35 PRK10750 potassium transporter 95.5 0.03 6.4E-07 54.2 6.2 151 108-262 303-465 (483)
36 PRK05482 potassium-transportin 95.3 0.025 5.4E-07 55.1 5.1 193 76-280 284-509 (559)
37 TIGR00933 2a38 potassium uptak 94.8 0.064 1.4E-06 50.5 6.2 127 111-264 130-273 (390)
38 PF00060 Lig_chan: Ligand-gate 94.0 0.019 4.2E-07 45.8 0.6 59 107-167 42-100 (148)
39 KOG0499 Cyclic nucleotide-gate 93.6 0.12 2.6E-06 50.4 5.2 53 110-164 404-456 (815)
40 PRK10750 potassium transporter 93.6 0.13 2.9E-06 49.8 5.7 53 63-127 172-224 (483)
41 KOG3827 Inward rectifier K+ ch 93.2 0.27 5.8E-06 45.5 6.6 51 223-273 111-163 (400)
42 PF00520 Ion_trans: Ion transp 93.2 0.036 7.8E-07 45.7 1.0 50 223-272 144-199 (200)
43 KOG0500 Cyclic nucleotide-gate 92.1 0.16 3.5E-06 48.3 3.8 53 227-280 186-238 (536)
44 TIGR00934 2a38euk potassium up 92.1 0.16 3.4E-06 51.5 3.9 175 75-262 586-784 (800)
45 PF02386 TrkH: Cation transpor 91.9 0.11 2.4E-06 48.2 2.4 152 108-262 175-338 (354)
46 PF00060 Lig_chan: Ligand-gate 90.5 0.076 1.6E-06 42.2 -0.0 56 224-280 44-99 (148)
47 COG0168 TrkG Trk-type K+ trans 89.7 0.92 2E-05 44.2 6.7 61 202-262 402-470 (499)
48 KOG0499 Cyclic nucleotide-gate 87.2 0.45 9.7E-06 46.5 2.6 56 221-277 400-455 (815)
49 KOG4440 NMDA selective glutama 83.0 1.5 3.2E-05 43.3 4.0 56 108-164 612-667 (993)
50 PRK05482 potassium-transportin 73.6 10 0.00022 37.4 6.6 46 108-153 450-497 (559)
51 KOG1053 Glutamate-gated NMDA-t 72.7 13 0.00029 38.5 7.3 64 108-176 608-675 (1258)
52 KOG1052 Glutamate-gated kainat 72.2 5.1 0.00011 40.3 4.4 52 229-281 386-437 (656)
53 KOG1052 Glutamate-gated kainat 71.2 11 0.00023 38.0 6.5 56 107-164 379-434 (656)
54 KOG3676 Ca2+-permeable cation 65.4 22 0.00047 36.3 7.1 56 110-165 587-649 (782)
55 TIGR00934 2a38euk potassium up 63.2 20 0.00043 36.9 6.4 62 205-267 590-664 (800)
56 PF02386 TrkH: Cation transpor 62.6 1.8 4E-05 40.1 -0.9 43 111-153 55-103 (354)
57 PF07077 DUF1345: Protein of u 55.8 4.7 0.0001 33.8 0.5 51 220-270 128-178 (180)
58 PF07077 DUF1345: Protein of u 53.6 28 0.0006 29.2 4.8 49 107-156 130-178 (180)
59 KOG1054 Glutamate-gated AMPA-t 48.8 2.7 5.8E-05 41.4 -2.2 54 108-163 594-647 (897)
60 PLN03223 Polycystin cation cha 46.4 43 0.00094 36.6 5.8 32 250-281 1394-1426(1634)
61 PF06624 RAMP4: Ribosome assoc 41.4 22 0.00048 24.4 2.0 27 194-220 32-58 (63)
62 COG0168 TrkG Trk-type K+ trans 39.0 74 0.0016 31.1 5.9 55 219-274 193-254 (499)
63 PF04694 Corona_3: Coronavirus 38.9 28 0.00061 22.8 2.0 22 224-245 16-46 (60)
64 KOG3676 Ca2+-permeable cation 36.2 29 0.00062 35.5 2.6 55 224-278 586-648 (782)
65 KOG1053 Glutamate-gated NMDA-t 35.7 81 0.0018 33.1 5.6 41 241-281 622-666 (1258)
66 smart00786 SHR3_chaperone ER m 34.6 1.4E+02 0.0031 25.3 6.1 50 125-176 120-169 (196)
67 TIGR00870 trp transient-recept 31.8 1.6E+02 0.0035 30.1 7.3 43 123-165 570-617 (743)
68 COG3817 Predicted membrane pro 31.2 84 0.0018 27.9 4.4 26 108-134 31-56 (313)
69 KOG4440 NMDA selective glutama 30.3 19 0.00042 35.9 0.4 55 223-277 612-666 (993)
70 PF11026 DUF2721: Protein of u 25.5 2.6E+02 0.0057 21.8 6.1 30 250-279 93-122 (130)
71 KOG2568 Predicted membrane pro 25.4 5.6E+02 0.012 25.3 9.2 13 120-132 289-301 (518)
72 PF06166 DUF979: Protein of un 24.9 50 0.0011 29.9 2.0 26 110-136 29-54 (308)
73 PF08016 PKD_channel: Polycyst 24.3 2.3E+02 0.0051 26.7 6.6 41 107-147 364-406 (425)
74 PF11167 DUF2953: Protein of u 22.9 54 0.0012 21.2 1.4 25 237-264 1-25 (53)
75 KOG3491 Predicted membrane pro 22.4 1.3E+02 0.0028 20.3 3.1 29 193-221 31-59 (65)
76 PF09125 COX2-transmemb: Cytoc 22.4 1.9E+02 0.0042 17.5 3.6 22 257-278 15-36 (38)
77 COG1226 Kch Kef-type K+ transp 21.9 16 0.00034 29.7 -1.8 45 109-153 117-161 (212)
78 PF08229 SHR3_chaperone: ER me 21.0 5.2E+02 0.011 22.0 7.2 46 130-176 124-169 (196)
No 1
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-35 Score=258.29 Aligned_cols=196 Identities=20% Similarity=0.238 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc-----------------------------------CCCCCCCcccchhheeee
Q 037810 73 TRKAVVFLAIYLGIGTICFYAVKSQIK-----------------------------------GMKNDGILDGIIDSVYFC 117 (282)
Q Consensus 73 ~~~~~~~l~~~l~~g~~~~~~~~~~~e-----------------------------------~~~~~~~~~~~~~a~yf~ 117 (282)
...++++.+.|+++|+.+|.++|...| ..++....|.|..||||+
T Consensus 9 ~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~GaFYFa 88 (350)
T KOG4404|consen 9 TLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGAFYFA 88 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcceEEE
Confidence 346777889999999999999987766 122445678899999999
Q ss_pred eeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccccccccccccccccccch
Q 037810 118 VVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFNKHAVLIVKALHTYEIADLNGILNEIETSKVRY 197 (282)
Q Consensus 118 ~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~e~~~~~~r~ 197 (282)
.+.+||||||..+|.|..||+||++|+++|+++..+ +++.+++.+..... .+++++++..... ......+
T Consensus 89 ~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lv-mFqs~gERlnt~~a-yil~~~r~~~~~r--------~~~~S~~ 158 (350)
T KOG4404|consen 89 TTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLV-MFQSIGERLNTFVA-YILRRCRRRLGRR--------RWDVSVY 158 (350)
T ss_pred EEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHH-HHHHHHHHHHHHHH-HHHHHHHHHhccc--------cCCCcHH
Confidence 999999999999999999999999999999999999 99999998865432 3344444432110 0122233
Q ss_pred hhh-hhhhhhhhhHHHHhhhhhhhccCCCccceeeEEeeeeeeecCCcccCCcc--------chhhHHHHHHHHHHHHHH
Q 037810 198 KCI-KILISLPLLILVSAVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSE--------GRIFAVYWILISCISLTL 268 (282)
Q Consensus 198 k~~-~~~~~~~~~~~~ga~~~~~~E~~~~~ds~yf~~vT~tTIGyGD~~p~~~~--------gr~~~~~~il~G~~~~a~ 268 (282)
.++ +.+..+++.++.||..|..+|+|+|+||+||||||+|||||||+++...- -+.+.++||++|+.+++.
T Consensus 159 ~l~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a 238 (350)
T KOG4404|consen 159 NLVLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYA 238 (350)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHH
Confidence 433 44455666888999999999999999999999999999999999998762 278999999999999999
Q ss_pred HHHHHHHHHH
Q 037810 269 LFLYVAELNI 278 (282)
Q Consensus 269 ~~~~i~~~~~ 278 (282)
++|.+.-.+.
T Consensus 239 ~~NllvLrf~ 248 (350)
T KOG4404|consen 239 LLNLLVLRFM 248 (350)
T ss_pred HHHHHHHHHH
Confidence 9999887665
No 2
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.7e-28 Score=228.81 Aligned_cols=165 Identities=21% Similarity=0.317 Sum_probs=132.1
Q ss_pred CcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH------hhhhcc
Q 037810 106 ILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFNKHAVLIVK------ALHTYE 179 (282)
Q Consensus 106 ~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~~~~~~~~~------~l~~~~ 179 (282)
..|+|.+|+||+++++|||||||++|.|..||+++++|+++|+|++.+ +++.+++++.+.......+ ....+.
T Consensus 112 ~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li-~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 190 (433)
T KOG1418|consen 112 QQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLL-ILADIGKFLADSLRKLYRRRHVELQRDRIRS 190 (433)
T ss_pred cceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 358889999999999999999999999999999999999999999999 9999999997754443321 000000
Q ss_pred ccc----cccccccccccc---cchhhhhhhhhhhhhHHHHhhhhhhhccCCCccceeeEEeeeeeeecCCcccCCccch
Q 037810 180 IAD----LNGILNEIETSK---VRYKCIKILISLPLLILVSAVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGR 252 (282)
Q Consensus 180 ~~~----~~~~l~e~~~~~---~r~k~~~~~~~~~~~~~~ga~~~~~~E~~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr 252 (282)
... ..+...+..... .+.++...+.++++++..|+.++...|+|+|++|+||+|+|+|||||||++|.+..++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~~~~ 270 (433)
T KOG1418|consen 191 NLRRSIGLRNRSVELGIELLDELRFILLLLLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTLLGR 270 (433)
T ss_pred hhhccccchhcccccchhhccCcceehhhhheeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCCcce
Confidence 000 001111111112 3567777777888899999999999999999999999999999999999999999877
Q ss_pred --------hhHHHHHHHHHHHHHHHHH
Q 037810 253 --------IFAVYWILISCISLTLLFL 271 (282)
Q Consensus 253 --------~~~~~~il~G~~~~a~~~~ 271 (282)
.+..+++++|+..++++..
T Consensus 271 ~~~~~~~~~~~~~~~~~g~~~~~~~~~ 297 (433)
T KOG1418|consen 271 FRREELVDPLASVWILSGLALLALVLL 297 (433)
T ss_pred eeccccccchhHHHHHhhhhHHHHHhh
Confidence 6889999999999999983
No 3
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.66 E-value=5.4e-16 Score=143.96 Aligned_cols=98 Identities=27% Similarity=0.435 Sum_probs=86.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhH
Q 037810 68 IRRPNTRKAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTG 147 (282)
Q Consensus 68 ~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~G 147 (282)
.++++.+.+. ++++|+++|.++|..+.|..|..+..+.|.+++-++|||++|||||||||++|+|..||++...-++.|
T Consensus 337 Tlr~S~~Elg-lLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~G 415 (477)
T KOG3713|consen 337 TLRRSYRELG-LLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCG 415 (477)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHh
Confidence 4677777777 477888899999999999999888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HHHHHHHHHHhH
Q 037810 148 MALFALL---VLAKAVDYLFNK 166 (282)
Q Consensus 148 i~~~~~i---~~~~~~~~~~~~ 166 (282)
+.++++| ++++++++..+.
T Consensus 416 VLvlAlPItiIv~nF~~~y~~~ 437 (477)
T KOG3713|consen 416 VLVLALPITIIVNNFSMYYSEL 437 (477)
T ss_pred HHHhhcchHhHhhhHHHHHHHH
Confidence 9999993 777777777553
No 4
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.62 E-value=1.1e-16 Score=116.44 Aligned_cols=72 Identities=31% Similarity=0.519 Sum_probs=61.2
Q ss_pred hhHHHHhhhhhh---hccCCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037810 208 LLILVSAVFQVT---IDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNIE 279 (282)
Q Consensus 208 ~~~~~ga~~~~~---~E~~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~~ 279 (282)
.++..++.+++. .|+|++.|++||+++|+|||||||+.|.++.||++++++++.|+.+++++++.+++.+++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~~ 79 (79)
T PF07885_consen 5 LVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLTQ 79 (79)
T ss_dssp HHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred eeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355666666666 578999999999999999999999999999999999999999999999999999998764
No 5
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.57 E-value=3e-15 Score=108.95 Aligned_cols=76 Identities=34% Similarity=0.642 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHH
Q 037810 80 LAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKA 159 (282)
Q Consensus 80 l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~ 159 (282)
++.++..|+..+.. .++.+ .|++.||+||+++|+||+||||++|+|+.||++++++++.|++++++ .++.+
T Consensus 3 ~~~~l~~~~~~~~~----~~~~~----~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~-~~~~~ 73 (79)
T PF07885_consen 3 LLLVLAFGAIFFYI----SEGSE----KWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFAL-FLSVL 73 (79)
T ss_dssp HHHHHHHHHHHHHH----TTSSS----TTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred EEeeeHHHHHHHHH----HHhcc----cCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHH-HHHHH
Confidence 44555556666654 12222 45559999999999999999999999999999999999999999999 99988
Q ss_pred HHHHH
Q 037810 160 VDYLF 164 (282)
Q Consensus 160 ~~~~~ 164 (282)
++.+.
T Consensus 74 ~~~l~ 78 (79)
T PF07885_consen 74 ASVLT 78 (79)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87764
No 6
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.44 E-value=2.5e-13 Score=127.12 Aligned_cols=69 Identities=29% Similarity=0.560 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHH
Q 037810 86 IGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALL 154 (282)
Q Consensus 86 ~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i 154 (282)
+.+.+.|..|....|.+.+.-|.+|.||+||..+|+|||||||.+|+|+.||+++..+.++|+.+|++|
T Consensus 246 fsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALP 314 (654)
T KOG1419|consen 246 FSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALP 314 (654)
T ss_pred HHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcc
Confidence 344445555655555566677899999999999999999999999999999999999999999999993
No 7
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.41 E-value=1.3e-13 Score=123.30 Aligned_cols=95 Identities=25% Similarity=0.396 Sum_probs=81.3
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhH
Q 037810 68 IRRPNTRKAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTG 147 (282)
Q Consensus 68 ~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~G 147 (282)
.++.+++-+. +|++|+.+|.++|....|..|-++..+.|.++.|||||+++|||||||||.+|.|..||++..+.++.|
T Consensus 353 Tl~aSmrElg-LLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaG 431 (507)
T KOG1545|consen 353 TLRASMRELG-LLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAG 431 (507)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhh
Confidence 5777888777 467778899999998888888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HHHHHHHHH
Q 037810 148 MALFALL---VLAKAVDYL 163 (282)
Q Consensus 148 i~~~~~i---~~~~~~~~~ 163 (282)
+.-+++| +++++.-++
T Consensus 432 VLTiALPVPVIVsNFnyFY 450 (507)
T KOG1545|consen 432 VLTIALPVPVIVSNFNYFY 450 (507)
T ss_pred heEecccccEEEeccccee
Confidence 9888873 455554444
No 8
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.25 E-value=1.3e-11 Score=115.07 Aligned_cols=66 Identities=21% Similarity=0.251 Sum_probs=55.6
Q ss_pred Hhhhhhhhcc-------CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037810 213 SAVFQVTIDK-------MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNI 278 (282)
Q Consensus 213 ga~~~~~~E~-------~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~ 278 (282)
-+.+.++.|+ -+..-++||++||+|||||||++|.|.+||+.+...++.|+.++|+-+..|.+=|.
T Consensus 359 FStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~ 431 (477)
T KOG3713|consen 359 FSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFS 431 (477)
T ss_pred HHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHH
Confidence 3444566675 56678899999999999999999999999999999999999999988777665543
No 9
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.23 E-value=3.8e-12 Score=119.35 Aligned_cols=81 Identities=22% Similarity=0.202 Sum_probs=69.3
Q ss_pred hhhhhhhhhhhhHHHHhhhhhhhcc-----------CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHH
Q 037810 198 KCIKILISLPLLILVSAVFQVTIDK-----------MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISL 266 (282)
Q Consensus 198 k~~~~~~~~~~~~~~ga~~~~~~E~-----------~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~ 266 (282)
.++..+.+-++.+++.+.+.|..|. -+|.||+||.+||+|||||||++|+|+.||+++.++.++|+..+
T Consensus 232 ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFF 311 (654)
T KOG1419|consen 232 ELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFF 311 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHH
Confidence 3566666666667778888888885 58999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 037810 267 TLLFLYVAELNI 278 (282)
Q Consensus 267 a~~~~~i~~~~~ 278 (282)
++--..+++-++
T Consensus 312 ALPAGILGSGfA 323 (654)
T KOG1419|consen 312 ALPAGILGSGFA 323 (654)
T ss_pred hcccccccchhh
Confidence 988777766554
No 10
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.18 E-value=1.5e-10 Score=108.37 Aligned_cols=59 Identities=24% Similarity=0.558 Sum_probs=52.0
Q ss_pred CcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 037810 106 ILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFN 165 (282)
Q Consensus 106 ~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~ 165 (282)
..+++.||+||+++|+||+||||++|.|..||+++++++++|++++++ .++.+...+.+
T Consensus 165 ~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~-~is~i~~p~i~ 223 (393)
T PRK10537 165 PIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFAT-SISAIFGPVIR 223 (393)
T ss_pred CCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 367789999999999999999999999999999999999999999988 77766554443
No 11
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.15 E-value=3.3e-11 Score=112.76 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=59.1
Q ss_pred hHHHHhhhhhhhcc------CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037810 209 LILVSAVFQVTIDK------MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNIE 279 (282)
Q Consensus 209 ~~~~ga~~~~~~E~------~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~~ 279 (282)
.+..+.+.++..|+ +++.||+||+++|+||+||||++|.+..||+|++++++.|+++++..++.+..-+++
T Consensus 147 l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i~ 223 (393)
T PRK10537 147 LLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVIR 223 (393)
T ss_pred HHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554555554 899999999999999999999999999999999999999999998888777654443
No 12
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.11 E-value=9e-11 Score=119.93 Aligned_cols=56 Identities=21% Similarity=0.505 Sum_probs=52.4
Q ss_pred cchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 037810 109 GIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFN 165 (282)
Q Consensus 109 ~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~ 165 (282)
.|..|+||+++|+|||||||++|.|..+|+++++++++|+.++++ +++.+++.+.+
T Consensus 250 ~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~-~ig~i~~li~~ 305 (823)
T PLN03192 250 RYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAY-LIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 367799999999999999999999999999999999999999999 99999988765
No 13
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.07 E-value=4.1e-11 Score=108.38 Aligned_cols=96 Identities=20% Similarity=0.322 Sum_probs=73.5
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHH
Q 037810 69 RRPNTRKAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGM 148 (282)
Q Consensus 69 ~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi 148 (282)
++....-+.+ +++-+..+.++|.-+.++.|...+.+-|.++..||||+++||||.||||.+|.|..||++..+..+.|+
T Consensus 317 LKSCASELGF-LlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGV 395 (632)
T KOG4390|consen 317 LKSCASELGF-LLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGV 395 (632)
T ss_pred HHHHHHHHhH-HHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccce
Confidence 3444444443 333334555666666666676666677899999999999999999999999999999999999999999
Q ss_pred HHHHHH---HHHHHHHHHHh
Q 037810 149 ALFALL---VLAKAVDYLFN 165 (282)
Q Consensus 149 ~~~~~i---~~~~~~~~~~~ 165 (282)
.++++| +++++++.+.+
T Consensus 396 LVIALPVPvIVSNFSRIYHQ 415 (632)
T KOG4390|consen 396 LVIALPVPVIVSNFSRIYHQ 415 (632)
T ss_pred EEEeccccEEEechhHHHhh
Confidence 888883 66777777654
No 14
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.03 E-value=2.2e-10 Score=102.84 Aligned_cols=47 Identities=26% Similarity=0.403 Sum_probs=43.2
Q ss_pred CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHH
Q 037810 223 MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLL 269 (282)
Q Consensus 223 ~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~ 269 (282)
-+..|||||++||+|||||||++|.|..|++.-.++.+.|+.-+|+-
T Consensus 392 ~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALP 438 (507)
T KOG1545|consen 392 SSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALP 438 (507)
T ss_pred CcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEeccc
Confidence 67899999999999999999999999999999999999998776654
No 15
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=99.02 E-value=4.1e-10 Score=105.60 Aligned_cols=57 Identities=21% Similarity=0.424 Sum_probs=54.7
Q ss_pred CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037810 223 MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNIE 279 (282)
Q Consensus 223 ~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~~ 279 (282)
|+|.+|+||+++++||||||+++|.|..||+++++|.++|+.++.++++.++..+.+
T Consensus 114 W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~ 170 (433)
T KOG1418|consen 114 WSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLAD 170 (433)
T ss_pred eecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998887765
No 16
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=98.97 E-value=1.2e-09 Score=96.89 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=53.3
Q ss_pred CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037810 223 MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNI 278 (282)
Q Consensus 223 ~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~ 278 (282)
|.|.-||||+.+.+||||||--.|.|+.||+|+++|.++|+...-.+|+.+.|-..
T Consensus 79 WkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERln 134 (350)
T KOG4404|consen 79 WKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLN 134 (350)
T ss_pred cccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888543
No 17
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.76 E-value=3.9e-09 Score=108.02 Aligned_cols=55 Identities=27% Similarity=0.411 Sum_probs=51.2
Q ss_pred CccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037810 225 VVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNIE 279 (282)
Q Consensus 225 ~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~~ 279 (282)
|..|+||+++|+|||||||+.|.+..+++++++++++|++++++.++.+++++.+
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3448999999999999999999999999999999999999999999999998764
No 18
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.74 E-value=1.5e-08 Score=96.02 Aligned_cols=84 Identities=20% Similarity=0.316 Sum_probs=70.9
Q ss_pred hhhhhhhhhhhhhHHHHhhhhhhhcc-------------CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHH
Q 037810 197 YKCIKILISLPLLILVSAVFQVTIDK-------------MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISC 263 (282)
Q Consensus 197 ~k~~~~~~~~~~~~~~ga~~~~~~E~-------------~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~ 263 (282)
.++.-.+.+++..++.+|.+++..|+ .+|.|+.||-.+|++||||||+.-.+..||.|.+++++.|+
T Consensus 248 irl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~gl 327 (1103)
T KOG1420|consen 248 IRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGL 327 (1103)
T ss_pred hhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHH
Confidence 34555566666677788888888885 67999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 037810 264 ISLTLLFLYVAELNIER 280 (282)
Q Consensus 264 ~~~a~~~~~i~~~~~~~ 280 (282)
+.+|.-+--+.|+.-.|
T Consensus 328 amfasyvpeiielignr 344 (1103)
T KOG1420|consen 328 AMFASYVPEIIELIGNR 344 (1103)
T ss_pred HHHHhhhHHHHHHHccc
Confidence 99988887777775433
No 19
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.73 E-value=1.7e-08 Score=95.64 Aligned_cols=86 Identities=22% Similarity=0.435 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCC--CCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHH
Q 037810 77 VVFLAIYLGIGTICFYAVKSQIKGMK--NDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALL 154 (282)
Q Consensus 77 ~~~l~~~l~~g~~~~~~~~~~~e~~~--~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i 154 (282)
.+++.+|+ .++.+.+.+|...+.|+ .+...-+|.++.||.++||+||||||++..|..||+|.++|++.|+++++-
T Consensus 255 sifisvwl-taag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfas- 332 (1103)
T KOG1420|consen 255 SIFISVWL-TAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFAS- 332 (1103)
T ss_pred HHHHHHHH-hhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHh-
Confidence 33334444 56666676765443332 123356779999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 037810 155 VLAKAVDYLF 164 (282)
Q Consensus 155 ~~~~~~~~~~ 164 (282)
.+..+.+.+-
T Consensus 333 yvpeiielig 342 (1103)
T KOG1420|consen 333 YVPEIIELIG 342 (1103)
T ss_pred hhHHHHHHHc
Confidence 6666666653
No 20
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.60 E-value=5.2e-08 Score=90.24 Aligned_cols=86 Identities=17% Similarity=0.262 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHH
Q 037810 75 KAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALL 154 (282)
Q Consensus 75 ~~~~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i 154 (282)
++++.+.+|+ +.+.++..-|++.+..+ .--+|.+++|+..+|+-++||||++|.|..||.++++-.++|-++.++
T Consensus 257 L~vftl~~Wi-i~sW~~~~cER~~~~~~---~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sal- 331 (489)
T KOG3684|consen 257 LLVFTLSLWI-IASWMLRQCERYHDSQD---VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSL- 331 (489)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhcchh---hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHH-
Confidence 4444444555 45555555555544321 123459999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 037810 155 VLAKAVDYLFN 165 (282)
Q Consensus 155 ~~~~~~~~~~~ 165 (282)
+++.++.-+..
T Consensus 332 lvAvisRKLeL 342 (489)
T KOG3684|consen 332 LVAVIARKLEL 342 (489)
T ss_pred HHHHHHHHHHH
Confidence 99988877754
No 21
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.57 E-value=1.1e-07 Score=94.28 Aligned_cols=55 Identities=22% Similarity=0.425 Sum_probs=52.8
Q ss_pred chhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 037810 110 IIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFN 165 (282)
Q Consensus 110 ~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~ 165 (282)
|..|+||+++|+||+||||..|.+...++|+++++++|+.++++ +++++..++++
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~-lIGNmt~~iqs 349 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAY-LIGNMTALLQS 349 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHH-HHhhHHHhHHH
Confidence 56799999999999999999999999999999999999999999 99999999976
No 22
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.36 E-value=5.5e-08 Score=88.40 Aligned_cols=61 Identities=30% Similarity=0.397 Sum_probs=49.7
Q ss_pred HHHHhhhhhhhcc-------CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHH
Q 037810 210 ILVSAVFQVTIDK-------MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLF 270 (282)
Q Consensus 210 ~~~ga~~~~~~E~-------~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~ 270 (282)
+.+-|.++++.|. -+..-+|||+++|+||.||||++|.+-.|++|-.+..+.|+.++|+-+
T Consensus 335 IIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPV 402 (632)
T KOG4390|consen 335 IIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPV 402 (632)
T ss_pred HHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccc
Confidence 3334444455564 566788999999999999999999999999999999999998877654
No 23
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=98.23 E-value=2.5e-06 Score=80.79 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=55.6
Q ss_pred CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037810 223 MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNIERR 281 (282)
Q Consensus 223 ~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~~~~ 281 (282)
.+.+.++||.++|++||||||.+|.-++.++..++.|.+.++++.--+.-++.-..||.
T Consensus 216 i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~tw~erq 274 (1087)
T KOG3193|consen 216 IDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQTWSERQ 274 (1087)
T ss_pred eeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999998888863
No 24
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=98.09 E-value=1.3e-05 Score=75.97 Aligned_cols=59 Identities=24% Similarity=0.410 Sum_probs=48.2
Q ss_pred cchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHH
Q 037810 109 GIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFNKHA 168 (282)
Q Consensus 109 ~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~~~~ 168 (282)
+++.++||.++|++||||||.+|.-+..++..++.+.+.++++.- -+..++....++|+
T Consensus 217 ~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~-q~~~l~~tw~erqk 275 (1087)
T KOG3193|consen 217 DLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPK-QLDELGQTWSERQK 275 (1087)
T ss_pred eeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHH-HHHHHHHHHHHHhh
Confidence 448999999999999999999999999999888887777766666 66777766655443
No 25
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.09 E-value=1.2e-06 Score=81.42 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=64.9
Q ss_pred hhhhhhhhhHHHHhhhhhhhcc--------CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHH
Q 037810 201 KILISLPLLILVSAVFQVTIDK--------MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLY 272 (282)
Q Consensus 201 ~~~~~~~~~~~~ga~~~~~~E~--------~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~ 272 (282)
......+.++++.++.+...|+ -+|.+++|+..+|+-+|||||++|.|..||..+++--++|..+.|+++..
T Consensus 256 vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAv 335 (489)
T KOG3684|consen 256 VLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAV 335 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHH
Confidence 3333444577778888888885 45899999999999999999999999999999999999999999999988
Q ss_pred HHHHH
Q 037810 273 VAELN 277 (282)
Q Consensus 273 i~~~~ 277 (282)
++-=.
T Consensus 336 isRKL 340 (489)
T KOG3684|consen 336 IARKL 340 (489)
T ss_pred HHHHH
Confidence 87533
No 26
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.90 E-value=1.9e-05 Score=72.57 Aligned_cols=55 Identities=25% Similarity=0.339 Sum_probs=44.1
Q ss_pred ccchhheeeeeeeEeeeeccc--ccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 037810 108 DGIIDSVYFCVVTMTAIGHGD--LMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYL 163 (282)
Q Consensus 108 ~~~~~a~yf~~~t~tTvGyGd--~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~ 163 (282)
.+|.+||+|++.|+||||||. +.|..+.+-++..+-+++|+.+.++ +++.+-..+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~-~~Glvfar~ 139 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAF-MTGLVFARF 139 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 567999999999999999999 5788899999999999999999988 776655544
No 27
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.88 E-value=4.8e-05 Score=72.81 Aligned_cols=55 Identities=25% Similarity=0.548 Sum_probs=49.6
Q ss_pred chhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 037810 110 IIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFN 165 (282)
Q Consensus 110 ~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~ 165 (282)
|..++||+++.|||||||+++|.|...|+|.+..+++|-.+.+. +++.+...+++
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAt-IFG~vTTI~QQ 478 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYAT-IFGHVTTIIQQ 478 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHH
Confidence 57899999999999999999999999999999999999999888 87777766643
No 28
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.87 E-value=4.4e-06 Score=83.10 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=48.9
Q ss_pred ccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037810 226 VDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNI 278 (282)
Q Consensus 226 ~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~ 278 (282)
.-|+||++.|+||+||||..|.+....+|+++++++|+.+.|++|+.+..+.+
T Consensus 296 ~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iq 348 (727)
T KOG0498|consen 296 VYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQ 348 (727)
T ss_pred HHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHH
Confidence 44799999999999999999999999999999999999999999998876654
No 29
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.00013 Score=70.01 Aligned_cols=57 Identities=18% Similarity=0.367 Sum_probs=51.6
Q ss_pred CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037810 223 MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNIE 279 (282)
Q Consensus 223 ~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~~ 279 (282)
--|..|+||+..++||||||.+.|.|+..++|.++.+++|-.+-|..|+.+...+.+
T Consensus 422 S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQ 478 (971)
T KOG0501|consen 422 SAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQ 478 (971)
T ss_pred ceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 346889999999999999999999999999999999999999999999888777664
No 30
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.19 E-value=0.00012 Score=67.39 Aligned_cols=55 Identities=16% Similarity=0.048 Sum_probs=42.1
Q ss_pred CCCccceeeEEeeeeeeecCC--cccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037810 223 MDVVDAICCSCATITTLGCGD--MSFSKSEGRIFAVYWILISCISLTLLFLYVAELN 277 (282)
Q Consensus 223 ~~~~ds~yf~~vT~tTIGyGD--~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~ 277 (282)
-+|.++|+|++-|.||||||. ..|..+.+.+++.+=.++|+.+.+.+++.+-.-+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~ 139 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARF 139 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 488999999999999999999 4577777788888888999998888887764433
No 31
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=96.55 E-value=0.0031 Score=59.38 Aligned_cols=166 Identities=13% Similarity=0.159 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecc--cccccCcchhHHHHHHHHhHHHHHHH---H-
Q 037810 81 AIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHG--DLMPNSVLSKLLVCAFVLTGMALFAL---L- 154 (282)
Q Consensus 81 ~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyG--d~~P~t~~gr~~~~~~~~~Gi~~~~~---i- 154 (282)
++.+..+.+.+...+... ...........++.++..++++|.||. |..--++.++++.++.+++|-..-+. +
T Consensus 205 ~~l~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~gSTaGGiK 282 (390)
T TIGR00933 205 FLLLAIGFILFLLLERGN--TLYSYSFGALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCSGSTAGGIK 282 (390)
T ss_pred HHHHHHHHHHHHHHHHcc--cccCCCHHHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCCcccCCchH
Confidence 333445556665554321 101121245589999999999999984 55555778888888888887432111 0
Q ss_pred ------HHHHHHHHHHhHHHHHHHHhhhhccccccccccccccccccchhhhhhhhhhhhhHHHHhhhhhhhc----cCC
Q 037810 155 ------VLAKAVDYLFNKHAVLIVKALHTYEIADLNGILNEIETSKVRYKCIKILISLPLLILVSAVFQVTID----KMD 224 (282)
Q Consensus 155 ------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~e~~~~~~r~k~~~~~~~~~~~~~~ga~~~~~~E----~~~ 224 (282)
++..+. ...++..+...... ++.+.+..+-........++ ++.++..+....| +.+
T Consensus 283 ~~r~~vl~~~~~---------~~~~~~~~~~~v~~----~~i~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 348 (390)
T TIGR00933 283 TTTFAILLKQVY---------REIRRGIHPRIIFS----RRIGGKTIDKAILISVWSFF-LVFALIFLLSILELISSGYD 348 (390)
T ss_pred HHHHHHHHHHHH---------HHHHccCCCceEEe----EEECCeehHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCC
Confidence 111111 11121111111110 11111111111111111111 1222222233333 689
Q ss_pred CccceeeEEeeeeeeecCCcc--c-CCccchhhHHHHHHHH
Q 037810 225 VVDAICCSCATITTLGCGDMS--F-SKSEGRIFAVYWILIS 262 (282)
Q Consensus 225 ~~ds~yf~~vT~tTIGyGD~~--p-~~~~gr~~~~~~il~G 262 (282)
+.|+++=++..++|||.+=-. | -++.+|+..++-|++|
T Consensus 349 ~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 349 FLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILIVLMFIG 389 (390)
T ss_pred HHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence 999999999999999977432 3 3345688777777665
No 32
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=96.54 E-value=0.0021 Score=53.23 Aligned_cols=52 Identities=33% Similarity=0.588 Sum_probs=40.7
Q ss_pred CcccchhheeeeeeeEeeeeccccccc-----CcchhHHHHHHHHh-HHHHHHHHHHHH
Q 037810 106 ILDGIIDSVYFCVVTMTAIGHGDLMPN-----SVLSKLLVCAFVLT-GMALFALLVLAK 158 (282)
Q Consensus 106 ~~~~~~~a~yf~~~t~tTvGyGd~~P~-----t~~gr~~~~~~~~~-Gi~~~~~i~~~~ 158 (282)
.+.++..|+|+.+.++||.|+||..|. +..+.++.+.+.++ ++.++.+ +++.
T Consensus 142 ~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nl-liav 199 (200)
T PF00520_consen 142 NFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNL-LIAV 199 (200)
T ss_dssp HHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred ccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHH-HHhc
Confidence 468889999999999999999999998 78888888555554 4455555 5543
No 33
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.51 E-value=0.025 Score=52.13 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=40.8
Q ss_pred ccchhheeeeeeeEeeeecccccccC--cchhHHHHHHHHhHHHHHHHHHHHHH
Q 037810 108 DGIIDSVYFCVVTMTAIGHGDLMPNS--VLSKLLVCAFVLTGMALFALLVLAKA 159 (282)
Q Consensus 108 ~~~~~a~yf~~~t~tTvGyGd~~P~t--~~gr~~~~~~~~~Gi~~~~~i~~~~~ 159 (282)
.++..||-|++-|-||||||--++.. |.+-+..++-.++|..+-+. +++.+
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~af-m~G~i 163 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAF-MVGAI 163 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 56689999999999999999888754 56777778888888887777 55544
No 34
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.36 E-value=0.0076 Score=57.09 Aligned_cols=55 Identities=24% Similarity=0.358 Sum_probs=49.2
Q ss_pred cchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 037810 109 GIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFN 165 (282)
Q Consensus 109 ~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~ 165 (282)
.|.-++||+.-|+||+| --..|.|..-..|.++=.++|+.+++. +++.+++.+.+
T Consensus 183 eY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAt-IvG~VGsmVtn 237 (536)
T KOG0500|consen 183 EYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFAT-IVGNVGSMVTN 237 (536)
T ss_pred HHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhh-hhccHhHHHHh
Confidence 35679999999999999 566889999999999999999999999 99999988854
No 35
>PRK10750 potassium transporter; Provisional
Probab=95.49 E-value=0.03 Score=54.22 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=75.7
Q ss_pred ccchhheeeeeeeEeeeecc--cccccCcchhHHHHHHHHhHHHHHHH---HHHHHHHHHHHhHHHHHHHHhhhhccccc
Q 037810 108 DGIIDSVYFCVVTMTAIGHG--DLMPNSVLSKLLVCAFVLTGMALFAL---LVLAKAVDYLFNKHAVLIVKALHTYEIAD 182 (282)
Q Consensus 108 ~~~~~a~yf~~~t~tTvGyG--d~~P~t~~gr~~~~~~~~~Gi~~~~~---i~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (282)
..+.++++.++..+||.||. |+.--++..+++.++.+++|=+.-+. +=+..+.-.. +.-....++..+.+...
T Consensus 303 ~~l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIGG~~GSTaGGIKv~R~~vl~--~~~~~~l~~~~~P~~V~ 380 (483)
T PRK10750 303 MTLNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVIRILLLF--KQGNRELKRLVHPNAVY 380 (483)
T ss_pred HHHHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHcCCcccCcccHHHHHHHHHH--HHHHHHHHHhcCCCcee
Confidence 44578888887778999996 44444566777777777776433222 0000000000 11111111111100000
Q ss_pred ccccc-ccccccccchhhhhhhhhhhhhHHHHhhhhhhhccCCCccceeeEEeeeeeeecCCc-c-----cCCccchhhH
Q 037810 183 LNGIL-NEIETSKVRYKCIKILISLPLLILVSAVFQVTIDKMDVVDAICCSCATITTLGCGDM-S-----FSKSEGRIFA 255 (282)
Q Consensus 183 ~~~~l-~e~~~~~~r~k~~~~~~~~~~~~~~ga~~~~~~E~~~~~ds~yf~~vT~tTIGyGD~-~-----p~~~~gr~~~ 255 (282)
+-+.. ++.+.+ .-.+....+.+.+..+.+++.++ ..|+.+..+|+--+..+++++|.|=- + .-++.+|++.
T Consensus 381 ~v~~~gr~i~~~-~v~~v~~~~~ly~~~~~~~~~~l-~~~g~~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il 458 (483)
T PRK10750 381 SIKLGNRALPER-ILEAVWGFFSAYALVFIVSMLAI-IATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWIL 458 (483)
T ss_pred eeeECCEECCHH-HHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHH
Confidence 00000 011110 11223333333443445555555 66778888888777777887776632 2 3345679988
Q ss_pred HHHHHHH
Q 037810 256 VYWILIS 262 (282)
Q Consensus 256 ~~~il~G 262 (282)
++-|++|
T Consensus 459 ~~~MllG 465 (483)
T PRK10750 459 IANMLFG 465 (483)
T ss_pred HHHHHHH
Confidence 8888876
No 36
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=95.35 E-value=0.025 Score=55.11 Aligned_cols=193 Identities=13% Similarity=0.149 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCC-CCC----CC------cccchhheeeeeeeEeeee-cccccc-cCcchhHHHHH
Q 037810 76 AVVFLAIYLGIGTICFYAVKSQIKGM-KND----GI------LDGIIDSVYFCVVTMTAIG-HGDLMP-NSVLSKLLVCA 142 (282)
Q Consensus 76 ~~~~l~~~l~~g~~~~~~~~~~~e~~-~~~----~~------~~~~~~a~yf~~~t~tTvG-yGd~~P-~t~~gr~~~~~ 142 (282)
+.....+.+++|+++++..|...... ... +. |-....|+|-+++|-||.| +-.+.. -++.+.++.++
T Consensus 284 vl~~~~iL~i~g~~~~~~~E~~~np~l~~l~~~gn~egKE~RfG~~~salF~svTtrtTaG~fNsm~dsltp~~~lv~m~ 363 (559)
T PRK05482 284 ILAAMLVLFLAGLAVTMWAELQGNPALAALGIDGNMEGKEVRFGIAASALFAVVTTAASTGAVNAMHDSLTPLGGLVPLL 363 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHccCCcchhhccCCCCcccchhhhhhHHHHHHHHHHhhhhcchHHHHHHhhccHHHHHHHH
Confidence 33334444556777777777541110 000 11 1225788999999988888 544422 36788889998
Q ss_pred HHHhH-HH-------HHHHHHHHHHHHHHHhHHHHHHHHhhhhccccccccccccccccccchhhhhhhhhhhhhHHHHh
Q 037810 143 FVLTG-MA-------LFALLVLAKAVDYLFNKHAVLIVKALHTYEIADLNGILNEIETSKVRYKCIKILISLPLLILVSA 214 (282)
Q Consensus 143 ~~~~G-i~-------~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~e~~~~~~r~k~~~~~~~~~~~~~~ga 214 (282)
.+++| .. +..+..+..+.-.+ ....+. +..+-.+ |+++.+..+... ..+.+...++++++
T Consensus 364 lMfIG~~~pGGtGgGl~~~~tfaIL~vfi-----~glmvG-rtpe~~g-----RkI~~~eik~A~-~vilv~~~lVl~~t 431 (559)
T PRK05482 364 NMQLGEVIFGGVGSGLYGMLVFVILAVFI-----AGLMVG-RTPEYLG-----KKIEAREMKLAA-LAILVHPLLVLVGT 431 (559)
T ss_pred HHHhCCCCCccchHhHHHHHHHHHHHHHH-----HhHccC-CCCeEEc-----cccCHHHHHHHH-HHHHHHHHHHHHHH
Confidence 88887 21 11110111111111 000111 1111000 112222111112 22222223444444
Q ss_pred hhhh-h-------hcc--CCCccceeeEEeeeeeeec--CCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037810 215 VFQV-T-------IDK--MDVVDAICCSCATITTLGC--GDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNIER 280 (282)
Q Consensus 215 ~~~~-~-------~E~--~~~~ds~yf~~vT~tTIGy--GD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~~~ 280 (282)
.+.. . .|+ .++.|.+|=......|+|. |++.+.+..+++...+-|++|=...-.+.-.++..+.++
T Consensus 432 aial~~~~~~~~~~n~g~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~Gpit~~lAlAgsla~k 509 (559)
T PRK05482 432 ALALATPAGRAGISNPGPHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFLPIIPVLAIAGSLAAK 509 (559)
T ss_pred HHHHHhccccccccCCCCCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2222 2 332 6889999988888888875 468899999999999999987444333333334444433
No 37
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=94.82 E-value=0.064 Score=50.49 Aligned_cols=127 Identities=9% Similarity=0.177 Sum_probs=67.9
Q ss_pred hhheeeeeeeEeeeecccccc------cCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccccccc
Q 037810 111 IDSVYFCVVTMTAIGHGDLMP------NSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFNKHAVLIVKALHTYEIADLN 184 (282)
Q Consensus 111 ~~a~yf~~~t~tTvGyGd~~P------~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (282)
.||++.++.+++|-|+.-... .++...++.++.+++|-.-+.. .... +. .+ ++..
T Consensus 130 ~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iGg~gF~v-~~~~----~~-------~~--~~~~----- 190 (390)
T TIGR00933 130 FDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGGLGFTV-HYDV----YL-------LL--RKRV----- 190 (390)
T ss_pred HHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHHhcCHHH-HHHH----HH-------Hc--ccCc-----
Confidence 999999999999999853322 2333556666666665333333 2111 10 00 0000
Q ss_pred cccccccccccchhhhhhhhhhhhhHHHHhhhhhhhcc---------CCCccceeeEEeeeeeeecCCc--ccCCccchh
Q 037810 185 GILNEIETSKVRYKCIKILISLPLLILVSAVFQVTIDK---------MDVVDAICCSCATITTLGCGDM--SFSKSEGRI 253 (282)
Q Consensus 185 ~~l~e~~~~~~r~k~~~~~~~~~~~~~~ga~~~~~~E~---------~~~~ds~yf~~vT~tTIGyGD~--~p~~~~gr~ 253 (282)
++. .+..+..+.. .++++.++.+.+...|. ....++.++..++.+|-||.-. .--++..++
T Consensus 191 ---~~l-~~~~~~~~~~----~~~l~~~~~i~~~l~~~~~~~~~~~~~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~l 262 (390)
T TIGR00933 191 ---FKL-SLDTKVRLFV----TFLLLAIGFILFLLLERGNTLYSYSFGALLLSAFFQSSTLRTAGFSTIDFAALPTATLV 262 (390)
T ss_pred ---cee-ecCccHHHHH----HHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHHHHHhhccCCCccccChhhcCHHHHH
Confidence 000 0011111111 12233444444444441 2367888999999999999843 333345688
Q ss_pred hHHHHHHHHHH
Q 037810 254 FAVYWILISCI 264 (282)
Q Consensus 254 ~~~~~il~G~~ 264 (282)
+.++.+++|-+
T Consensus 263 ll~~lMfIGg~ 273 (390)
T TIGR00933 263 LLLLLMFIGGC 273 (390)
T ss_pred HHHHHHHHcCC
Confidence 88888888744
No 38
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=94.00 E-value=0.019 Score=45.75 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=44.6
Q ss_pred cccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 037810 107 LDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFNKH 167 (282)
Q Consensus 107 ~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~~~ 167 (282)
..++.+++|+.+.+++. +-++..|++..+|++.+++.++.+.+... ..+.+...+...+
T Consensus 42 ~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~-Yta~L~s~Lt~~~ 100 (148)
T PF00060_consen 42 RFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIAS-YTANLTSFLTVPK 100 (148)
T ss_dssp HHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHH
T ss_pred cccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccC
Confidence 35678999999888877 66789999999999999999999999988 8888888876533
No 39
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.64 E-value=0.12 Score=50.39 Aligned_cols=53 Identities=25% Similarity=0.410 Sum_probs=47.3
Q ss_pred chhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 037810 110 IIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLF 164 (282)
Q Consensus 110 ~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~ 164 (282)
|..++||+.-|++||| |...|+|...-+|..+--+.|+.+|++ +++.+.+.+-
T Consensus 404 YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFsl-liGQmRDvi~ 456 (815)
T KOG0499|consen 404 YIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSL-LIGQMRDVIG 456 (815)
T ss_pred eeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 3899999999999999 999999988888887777889999999 9998888774
No 40
>PRK10750 potassium transporter; Provisional
Probab=93.63 E-value=0.13 Score=49.79 Aligned_cols=53 Identities=9% Similarity=0.138 Sum_probs=36.2
Q ss_pred CcchhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecc
Q 037810 63 ESNSAIRRPNTRKAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHG 127 (282)
Q Consensus 63 ~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyG 127 (282)
++.....+...+.+..+.+.+-++++..+... |. +. .||+..++.+++|-||.
T Consensus 172 ~~~~p~i~~ta~~l~~iY~~lT~~~~~ll~~~-----Gm---~~----fdAi~ha~saisTgGFs 224 (483)
T PRK10750 172 NKMRPRIAETAKTLWLIYVLLTVACALALWFA-----GM---DA----FDAIGHSFSTIAIGGFS 224 (483)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHc-----CC---cH----HHHHHHHHHHHhccCcC
Confidence 44444556666766666666666665555432 32 55 99999999999999983
No 41
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=93.22 E-value=0.27 Score=45.55 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=37.1
Q ss_pred CCCccceeeEEeeeeeeecCCcccCCcc--chhhHHHHHHHHHHHHHHHHHHH
Q 037810 223 MDVVDAICCSCATITTLGCGDMSFSKSE--GRIFAVYWILISCISLTLLFLYV 273 (282)
Q Consensus 223 ~~~~ds~yf~~vT~tTIGyGD~~p~~~~--gr~~~~~~il~G~~~~a~~~~~i 273 (282)
.++.-||-|++-|-||||||--+++... +.+..++=.++|+.+-+..++.+
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i 163 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAI 163 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788999999999999998888764 34444555667777666655443
No 42
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=93.20 E-value=0.036 Score=45.72 Aligned_cols=50 Identities=26% Similarity=0.297 Sum_probs=39.4
Q ss_pred CCCccceeeEEeeeeeeecCCcccC-----CccchhhHHHHH-HHHHHHHHHHHHH
Q 037810 223 MDVVDAICCSCATITTLGCGDMSFS-----KSEGRIFAVYWI-LISCISLTLLFLY 272 (282)
Q Consensus 223 ~~~~ds~yf~~vT~tTIGyGD~~p~-----~~~gr~~~~~~i-l~G~~~~a~~~~~ 272 (282)
-++..|+|+.+.++||.|+||..|. +..+.++.+.++ +.++.+++++++.
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliav 199 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAV 199 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence 6788999999999999999999998 666777774444 4455677777664
No 43
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.12 E-value=0.16 Score=48.34 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=46.1
Q ss_pred cceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037810 227 DAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNIER 280 (282)
Q Consensus 227 ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~~~ 280 (282)
-|+||+..|+|||| ---.|.++.--.|.++=.++|+.++|..++.++++.+..
T Consensus 186 ~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm 238 (536)
T KOG0500|consen 186 YSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM 238 (536)
T ss_pred HHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence 38999999999998 445788888889999999999999999999999887754
No 44
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=92.08 E-value=0.16 Score=51.53 Aligned_cols=175 Identities=10% Similarity=0.044 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecc--cccccCcchhHHHHHHHHhHHHHHH
Q 037810 75 KAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHG--DLMPNSVLSKLLVCAFVLTGMALFA 152 (282)
Q Consensus 75 ~~~~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyG--d~~P~t~~gr~~~~~~~~~Gi~~~~ 152 (282)
.++..+++.++++.++|..+|.........+....+.+|++-++.+ -|-|+- |+.-.++...++.++.+++|..-++
T Consensus 586 ill~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~Pta 664 (800)
T TIGR00934 586 WLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLPLA 664 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCCcc
Confidence 4455566667788888888875432222223345568888888765 666765 3344466777888888777654433
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhccccccccccccccccccch---hhhhhhhhhhhhHHHHhhhhhhhcc-------
Q 037810 153 LLVLAKAVDYLFNKHAVLIVKALHTYEIADLNGILNEIETSKVRY---KCIKILISLPLLILVSAVFQVTIDK------- 222 (282)
Q Consensus 153 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~e~~~~~~r~---k~~~~~~~~~~~~~~ga~~~~~~E~------- 222 (282)
. -+.. ++...+ ..+.....+ +.++. . +...+++ .+..++.+.+.+++++.+++...|+
T Consensus 665 g-gIK~-TTvyee----~sLgi~~~~---g~~~~-~--~~~~rsi~~~~irrqLs~dlw~I~l~~flI~I~E~~~l~~~~ 732 (800)
T TIGR00934 665 I-SIRR-TNVYEE----QSLGLYNEE---NEEHE-G--ESSTKSFIGAHLRRQLSFDLWYIFLGLFIICICEGRKIQDPD 732 (800)
T ss_pred c-eeec-eeeehe----eheeeeecc---CCccc-c--ccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 3 2111 000100 000000000 00000 0 0111111 1222223334455666666667774
Q ss_pred ---CCCccceeeEEeeeeeeecCCcccC---------CccchhhHHHHHHHH
Q 037810 223 ---MDVVDAICCSCATITTLGCGDMSFS---------KSEGRIFAVYWILIS 262 (282)
Q Consensus 223 ---~~~~ds~yf~~vT~tTIGyGD~~p~---------~~~gr~~~~~~il~G 262 (282)
.++++.++=++....|||+-=-.|. +..||++.++.|+.|
T Consensus 733 ~~~fs~f~ILFEVVSAyGTVGLSlG~p~~~~SfSg~ls~~sKLVII~vM~~G 784 (800)
T TIGR00934 733 PPNFNVFNILFEVVSAYGTVGLSLGYSCSNYSFSGQFTTLSKLVIIAMLIRG 784 (800)
T ss_pred cccccHHHHHhhhhhhccceeecCCCCCcccccCCCCCcchHHHHhHHHHcc
Confidence 3556666656667777776655443 235688777776655
No 45
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=91.87 E-value=0.11 Score=48.20 Aligned_cols=152 Identities=14% Similarity=0.135 Sum_probs=62.6
Q ss_pred ccchhheeeeeeeEeeeecc--cccccCcchhHHHHHHHHhHHHHHHHHHHH-HHHHHHH-hHHHHHHHHhhhhcccccc
Q 037810 108 DGIIDSVYFCVVTMTAIGHG--DLMPNSVLSKLLVCAFVLTGMALFALLVLA-KAVDYLF-NKHAVLIVKALHTYEIADL 183 (282)
Q Consensus 108 ~~~~~a~yf~~~t~tTvGyG--d~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~-~~~~~~~-~~~~~~~~~~l~~~~~~~~ 183 (282)
.....+.++...+.+|.||. |+.--++..+++.++.+++|-...+. .-+ ...+... -+.-+...+..+.++. ..
T Consensus 175 ~~~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg~~gST-aGGiK~~r~~il~~~~~~~~~~~~p~~~-~~ 252 (354)
T PF02386_consen 175 GSKRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGGSPGST-AGGIKITRFAILLKSIREIKRLIHPGAV-SP 252 (354)
T ss_dssp HHHHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S-TTSS---SS-HHHHHHHHHHHHHHHHHH-SSS----
T ss_pred HHHHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcCccccc-cCCcceehhhHHHhhHHHHHHHhcCCCc-cc
Confidence 34456778888899999996 44444667788888877776433222 000 0000000 0000001111111110 00
Q ss_pred cccc-ccccccccchhhhhhhhhhhhhHHHHhhhhhhhccCC-CccceeeEEeeeeeeecCCcc--cCC-cc---chhhH
Q 037810 184 NGIL-NEIETSKVRYKCIKILISLPLLILVSAVFQVTIDKMD-VVDAICCSCATITTLGCGDMS--FSK-SE---GRIFA 255 (282)
Q Consensus 184 ~~~l-~e~~~~~~r~k~~~~~~~~~~~~~~ga~~~~~~E~~~-~~ds~yf~~vT~tTIGyGD~~--p~~-~~---gr~~~ 255 (282)
.+.- ++.+++ .-.+....+.+.++.+++++.++...+... +.|+++=+...++|||.+=-. |.- .. +|+..
T Consensus 253 ~~~~~r~i~~~-~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vl 331 (354)
T PF02386_consen 253 VRFNGRRISEQ-TVRKAFAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVL 331 (354)
T ss_dssp --SSS---TTS-HHHHHCCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHH
T ss_pred eeecceeechh-hhhhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHH
Confidence 0000 111111 011233333333445556666666655433 689999889999999876333 222 23 67777
Q ss_pred HHHHHHH
Q 037810 256 VYWILIS 262 (282)
Q Consensus 256 ~~~il~G 262 (282)
++-|++|
T Consensus 332 i~~M~~G 338 (354)
T PF02386_consen 332 IFLMLLG 338 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777765
No 46
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=90.55 E-value=0.076 Score=42.24 Aligned_cols=56 Identities=14% Similarity=0.231 Sum_probs=41.9
Q ss_pred CCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037810 224 DVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNIER 280 (282)
Q Consensus 224 ~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~~~ 280 (282)
++.+++|+.+.++.. +-++..|.+..+|++.++|.++++.+.+..-+.++..++..
T Consensus 44 ~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 44 SLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp HHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 367788888888776 66789999999999999999999999999888888877643
No 47
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=89.74 E-value=0.92 Score=44.19 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=41.3
Q ss_pred hhhhhhhhHHHHhhhhhhhccCCCccceeeEEeeeeeeecCCcccC--Cccc------hhhHHHHHHHH
Q 037810 202 ILISLPLLILVSAVFQVTIDKMDVVDAICCSCATITTLGCGDMSFS--KSEG------RIFAVYWILIS 262 (282)
Q Consensus 202 ~~~~~~~~~~~ga~~~~~~E~~~~~ds~yf~~vT~tTIGyGD~~p~--~~~g------r~~~~~~il~G 262 (282)
.+.+.+..+++++.+....|.-+++|+++=.+.++.|||.|=-.+. +..+ ++..++-|++|
T Consensus 402 ~~~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~G 470 (499)
T COG0168 402 FFFLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIG 470 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhh
Confidence 3334444566666666655544799999999999999998744332 3344 77777777765
No 48
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.23 E-value=0.45 Score=46.54 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=47.7
Q ss_pred ccCCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037810 221 DKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELN 277 (282)
Q Consensus 221 E~~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~ 277 (282)
||-.|+-++||++-|++||| |.-.|++....+|..+=-++|+.+++.+++.+.++.
T Consensus 400 ~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi 455 (815)
T KOG0499|consen 400 EGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVI 455 (815)
T ss_pred CCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999 887888877777777777899999999999887764
No 49
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=83.03 E-value=1.5 Score=43.29 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=50.5
Q ss_pred ccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 037810 108 DGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLF 164 (282)
Q Consensus 108 ~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~ 164 (282)
-++.+|+||+.-.+..-|-|.-.|.+-..|++.++|+-+.+.+++- ..++++.+++
T Consensus 612 lnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVAS-YTANLAAFLV 667 (993)
T KOG4440|consen 612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVAS-YTANLAAFLV 667 (993)
T ss_pred cchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehh-hhhhhhhhee
Confidence 4558999999999999999999999999999999999999988888 8888887774
No 50
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=73.64 E-value=10 Score=37.42 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=37.4
Q ss_pred ccchhheeeeeeeEeeeec--ccccccCcchhHHHHHHHHhHHHHHHH
Q 037810 108 DGIIDSVYFCVVTMTAIGH--GDLMPNSVLSKLLVCAFVLTGMALFAL 153 (282)
Q Consensus 108 ~~~~~a~yf~~~t~tTvGy--Gd~~P~t~~gr~~~~~~~~~Gi~~~~~ 153 (282)
..+.+.+|=......|+|. |++.+.|+.+|+..++-+++|=.....
T Consensus 450 hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~Gpit 497 (559)
T PRK05482 450 HGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFLPII 497 (559)
T ss_pred CCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4558999988888999984 668899999999999999998544333
No 51
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=72.74 E-value=13 Score=38.47 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=44.9
Q ss_pred ccchhheeeeeeeEeeeecccccc----cCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 037810 108 DGIIDSVYFCVVTMTAIGHGDLMP----NSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFNKHAVLIVKALH 176 (282)
Q Consensus 108 ~~~~~a~yf~~~t~tTvGyGd~~P----~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~~~~~~~~~~l~ 176 (282)
-++..|+|-+... =|++.+| +.+.+|+...+|+++++.+.+. ..++++.+++......-+..++
T Consensus 608 FtigkaiwllwaL----vFnnsVpv~nPKgtTskiMv~VWAfFavifLAs-YTANLAAfMIqE~~~d~vSGls 675 (1258)
T KOG1053|consen 608 FTIGKAIWLLWAL----VFNNSVPVENPKGTTSKIMVLVWAFFAVIFLAS-YTANLAAFMIQEEYYDTVSGLS 675 (1258)
T ss_pred eehhhHHHHHHHH----HhCCCcCCCCCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhccccC
Confidence 3556777744322 2677765 5678999999999999999999 9999998886544333333333
No 52
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=72.15 E-value=5.1 Score=40.27 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=39.2
Q ss_pred eeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037810 229 ICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNIERR 281 (282)
Q Consensus 229 ~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~~~~ 281 (282)
+|+++.++..-| +|..|.+..+|++..+|.++++.+.+.--+.++..++..|
T Consensus 386 ~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~~~ 437 (656)
T KOG1052|consen 386 LWLTVGSLLQQG-SDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTVPR 437 (656)
T ss_pred hhhhhHHHhccC-CCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 334444444444 4589999999999999999999988888888888776543
No 53
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=71.19 E-value=11 Score=37.99 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=43.9
Q ss_pred cccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 037810 107 LDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLF 164 (282)
Q Consensus 107 ~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~ 164 (282)
.|+..+++|+++.++..-|-+ ..|.+..+|++..+|.++++.+... ..++++..+.
T Consensus 379 ~~~~~~~~~~~~~~~~~q~~~-~~p~~~~~Rll~~~w~~~~lil~ss-YTa~L~a~Lt 434 (656)
T KOG1052|consen 379 LFSLLNCLWLTVGSLLQQGSD-EIPRSLSTRLLLGAWWLFVLILISS-YTANLTAFLT 434 (656)
T ss_pred EeecccchhhhhHHHhccCCC-ccccchhhhHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 455556667776666666644 9999999999999999999988888 7777777764
No 54
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=65.44 E-value=22 Score=36.29 Aligned_cols=56 Identities=27% Similarity=0.313 Sum_probs=34.1
Q ss_pred chhheeeeeeeE--eeeeccccccc--C---cchhHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 037810 110 IIDSVYFCVVTM--TAIGHGDLMPN--S---VLSKLLVCAFVLTGMALFALLVLAKAVDYLFN 165 (282)
Q Consensus 110 ~~~a~yf~~~t~--tTvGyGd~~P~--t---~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~ 165 (282)
..|++.-.+.++ .|+||||..-. + ..++++.++|+++--.+..-++++.+++...+
T Consensus 587 ~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~ 649 (782)
T KOG3676|consen 587 PYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYET 649 (782)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 356644334443 68999998754 3 46777777777664333332377777766643
No 55
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=63.24 E-value=20 Score=36.89 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=37.6
Q ss_pred hhhhhHHHHhhhhhhhcc-------C----CCccceeeEEeeeeeeecC--CcccCCccchhhHHHHHHHHHHHHH
Q 037810 205 SLPLLILVSAVFQVTIDK-------M----DVVDAICCSCATITTLGCG--DMSFSKSEGRIFAVYWILISCISLT 267 (282)
Q Consensus 205 ~~~~~~~~ga~~~~~~E~-------~----~~~ds~yf~~vT~tTIGyG--D~~p~~~~gr~~~~~~il~G~~~~a 267 (282)
..++++++++++|...|- . -+.++++-++.+ -|-||- |+.--+++..++.++.|.+|..-++
T Consensus 590 tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~Pta 664 (800)
T TIGR00934 590 TLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLPLA 664 (800)
T ss_pred HHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCCcc
Confidence 344477888888888882 1 145566555543 555665 3333334557888888888766543
No 56
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=62.58 E-value=1.8 Score=40.06 Aligned_cols=43 Identities=16% Similarity=0.403 Sum_probs=25.5
Q ss_pred hhheeeeeeeEeeeecc----cccccC--cchhHHHHHHHHhHHHHHHH
Q 037810 111 IDSVYFCVVTMTAIGHG----DLMPNS--VLSKLLVCAFVLTGMALFAL 153 (282)
Q Consensus 111 ~~a~yf~~~t~tTvGyG----d~~P~t--~~gr~~~~~~~~~Gi~~~~~ 153 (282)
.+|++.++.+++|-|+. .+.|-. +...+..++++++|-.-+.+
T Consensus 55 ~~aifhs~Sa~~t~GFs~~~~sl~~f~~~~~i~~i~~~lmi~Gg~~F~~ 103 (354)
T PF02386_consen 55 FDAIFHSMSAFSTGGFSPFSDSLAPFNSNPFIEIIIIILMILGGLGFPL 103 (354)
T ss_dssp HHHHTTTHHHHTT----SSTTGGGSS---TTHHHHHHHHHHHHTS-HHH
T ss_pred HHHHHHHHHHHhcCCceecCCceecccccHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999999983 233433 35666666666665444443
No 57
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=55.81 E-value=4.7 Score=33.82 Aligned_cols=51 Identities=18% Similarity=0.107 Sum_probs=41.1
Q ss_pred hccCCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHH
Q 037810 220 IDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLF 270 (282)
Q Consensus 220 ~E~~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~ 270 (282)
-|+-+|.|=+||+|+.-+|-.-.|..+.+..-|-.+..-.+++....+..+
T Consensus 128 ~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~il 178 (180)
T PF07077_consen 128 DWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVIL 178 (180)
T ss_pred CCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344889999999999999999999999999888887777666665555443
No 58
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=53.57 E-value=28 Score=29.18 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=43.0
Q ss_pred cccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHH
Q 037810 107 LDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVL 156 (282)
Q Consensus 107 ~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~ 156 (282)
..+|.|=+||+++.-+|-.--|..+.|..-|-....-.+++..+... ++
T Consensus 130 ~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~-il 178 (180)
T PF07077_consen 130 EPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTV-IL 178 (180)
T ss_pred CCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHH-HH
Confidence 45679999999999999999999999999999999998888877666 44
No 59
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=48.83 E-value=2.7 Score=41.36 Aligned_cols=54 Identities=19% Similarity=0.362 Sum_probs=44.7
Q ss_pred ccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 037810 108 DGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYL 163 (282)
Q Consensus 108 ~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~ 163 (282)
-++.+++||+.-.+--=| -|+.|++-.||+....|-++-+.++.- ..++++.++
T Consensus 594 FgifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSS-YTANLAAFL 647 (897)
T KOG1054|consen 594 FGIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISS-YTANLAAFL 647 (897)
T ss_pred chhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhh-hhhHHHHHH
Confidence 366899999877666556 599999999999999999998888887 777777766
No 60
>PLN03223 Polycystin cation channel protein; Provisional
Probab=46.35 E-value=43 Score=36.56 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=23.7
Q ss_pred cchhhHHHHHH-HHHHHHHHHHHHHHHHHHhhc
Q 037810 250 EGRIFAVYWIL-ISCISLTLLFLYVAELNIERR 281 (282)
Q Consensus 250 ~gr~~~~~~il-~G~~~~a~~~~~i~~~~~~~~ 281 (282)
.|.++.+.|++ +.++++-+++..+.+.+.|-|
T Consensus 1394 LGPIYFfSFILLV~FILLNMFIAII~DSFsEVK 1426 (1634)
T PLN03223 1394 VGMIYFYSYNIFVFMILFNFLLAIICDAFGEVK 1426 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556655555 577889999999999998754
No 61
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=41.37 E-value=22 Score=24.42 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=19.7
Q ss_pred ccchhhhhhhhhhhhhHHHHhhhhhhh
Q 037810 194 KVRYKCIKILISLPLLILVSAVFQVTI 220 (282)
Q Consensus 194 ~~r~k~~~~~~~~~~~~~~ga~~~~~~ 220 (282)
..++++-..++.+++++++|+.+|..+
T Consensus 32 ~~k~pVgp~~L~l~iFVV~Gs~ifqii 58 (63)
T PF06624_consen 32 EKKYPVGPWLLGLFIFVVCGSAIFQII 58 (63)
T ss_pred cccCCcCHHHHhhhheeeEcHHHHHHH
Confidence 346777777777777888999887654
No 62
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=38.97 E-value=74 Score=31.14 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=35.4
Q ss_pred hhccCCCccceeeEEeeeeeeecCCcccCC------cc-chhhHHHHHHHHHHHHHHHHHHHH
Q 037810 219 TIDKMDVVDAICCSCATITTLGCGDMSFSK------SE-GRIFAVYWILISCISLTLLFLYVA 274 (282)
Q Consensus 219 ~~E~~~~~ds~yf~~vT~tTIGyGD~~p~~------~~-gr~~~~~~il~G~~~~a~~~~~i~ 274 (282)
...+.++.||++.++.+++|-||- ..+.+ ++ =.+.+++.|++|-.-+...+..+.
T Consensus 193 ~~~gm~~~dAi~hs~Sa~~ngGFS-~~~~Si~~f~~~~~i~~i~~~liI~GgigF~v~~~~~~ 254 (499)
T COG0168 193 ILAGMPLFDAIFHSMSAFNNGGFS-THDASIGYFNGSPLINLIITILIILGGIGFPVHYRLLI 254 (499)
T ss_pred HhccCCHHHHHHHHHHHhhcCCCC-CCcchhhhcccChhHHHHHHHHHHHhcCChHHHHHHHH
Confidence 345678899999999999999987 33322 11 145566667766655555554443
No 63
>PF04694 Corona_3: Coronavirus ORF3 protein; InterPro: IPR006784 This family represents the Coronavirus ORF3 protein, also known as the X2A protein.
Probab=38.88 E-value=28 Score=22.80 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=15.4
Q ss_pred CCccceeeEEe---------eeeeeecCCcc
Q 037810 224 DVVDAICCSCA---------TITTLGCGDMS 245 (282)
Q Consensus 224 ~~~ds~yf~~v---------T~tTIGyGD~~ 245 (282)
+-+|..||+++ -+--|||||-.
T Consensus 16 deld~~yfavtlkvef~tgkllVcigFGDTl 46 (60)
T PF04694_consen 16 DELDCAYFAVTLKVEFKTGKLLVCIGFGDTL 46 (60)
T ss_pred hhhcceeEEEEEEEEEecCcEEEEEecchHH
Confidence 44688999874 23468999953
No 64
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=36.18 E-value=29 Score=35.49 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=33.4
Q ss_pred CCccceeeEEeee--eeeecCCcccCCcc-----chhhHHHHH-HHHHHHHHHHHHHHHHHHH
Q 037810 224 DVVDAICCSCATI--TTLGCGDMSFSKSE-----GRIFAVYWI-LISCISLTLLFLYVAELNI 278 (282)
Q Consensus 224 ~~~ds~yf~~vT~--tTIGyGD~~p~~~~-----gr~~~~~~i-l~G~~~~a~~~~~i~~~~~ 278 (282)
+..|++.-.+.|+ .|||+||+.-..+. +++..+.|+ ++.+..+-|++...++-+.
T Consensus 586 ~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~ 648 (782)
T KOG3676|consen 586 NPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYE 648 (782)
T ss_pred ChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3456645445555 68999999776654 454444444 4466666666666665443
No 65
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=35.66 E-value=81 Score=33.06 Aligned_cols=41 Identities=15% Similarity=0.270 Sum_probs=34.4
Q ss_pred cCCcccCCc----cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037810 241 CGDMSFSKS----EGRIFAVYWILISCISLTLLFLYVAELNIERR 281 (282)
Q Consensus 241 yGD~~p~~~----~gr~~~~~~il~G~~~~a~~~~~i~~~~~~~~ 281 (282)
|+.-+|..+ .+|+.+.+|.+++++++|.-...+|..++++.
T Consensus 622 FnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE~ 666 (1258)
T KOG1053|consen 622 FNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEE 666 (1258)
T ss_pred hCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 666666654 46999999999999999999999998888764
No 66
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=34.59 E-value=1.4e+02 Score=25.33 Aligned_cols=50 Identities=8% Similarity=0.094 Sum_probs=31.9
Q ss_pred ecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 037810 125 GHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFNKHAVLIVKALH 176 (282)
Q Consensus 125 GyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~~~~~~~~~~l~ 176 (282)
.||| .++...=|++..-=.++.+.++++ ++-+.++++.++.+....+...
T Consensus 120 ~~g~-~~r~~~l~VlAASn~Il~~vLvGV-L~LQaG~wYAer~~~~~~~~~~ 169 (196)
T smart00786 120 NWGE-VDRNQGLAVLAASNTILLFVLVGV-LVLQAGLWYAERKDAKQKEEFA 169 (196)
T ss_pred ccCc-cchhHHHHHHhccchhHHHHHHHH-HHHHhhHHHHHHhHHHHHHHHH
Confidence 3555 333444466666666667777777 7778899998866655554443
No 67
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=31.82 E-value=1.6e+02 Score=30.07 Aligned_cols=43 Identities=23% Similarity=0.282 Sum_probs=25.3
Q ss_pred eeecccccc-----cCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 037810 123 AIGHGDLMP-----NSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFN 165 (282)
Q Consensus 123 TvGyGd~~P-----~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~ 165 (282)
++|.+|... ....|.++.++|+++...++.=++++.+++.+.+
T Consensus 570 ~~G~~~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~ 617 (743)
T TIGR00870 570 IIGLGDLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQL 617 (743)
T ss_pred HcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 466666522 2346777777777765544433366777766654
No 68
>COG3817 Predicted membrane protein [Function unknown]
Probab=31.20 E-value=84 Score=27.94 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=18.9
Q ss_pred ccchhheeeeeeeEeeeecccccccCc
Q 037810 108 DGIIDSVYFCVVTMTAIGHGDLMPNSV 134 (282)
Q Consensus 108 ~~~~~a~yf~~~t~tTvGyGd~~P~t~ 134 (282)
..+..+.+|..-.+|-+| ||..|.-.
T Consensus 31 ~r~~t~~FW~l~~~tFl~-g~~lp~~v 56 (313)
T COG3817 31 VRFGTGLFWGLFSLTFLG-GDRLPNIV 56 (313)
T ss_pred ceecchHHHHHHHHHHhc-cccccchh
Confidence 344888888888887777 68777543
No 69
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=30.25 E-value=19 Score=35.85 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=46.4
Q ss_pred CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037810 223 MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELN 277 (282)
Q Consensus 223 ~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~ 277 (282)
.++..|+||+.-.+-.-|-|...|.+-..|++-++|.=+.++++|.-...+|...
T Consensus 612 lnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFL 666 (993)
T KOG4440|consen 612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFL 666 (993)
T ss_pred cchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhe
Confidence 7788899999888888899999999999999999999988888887766655443
No 70
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=25.55 E-value=2.6e+02 Score=21.80 Aligned_cols=30 Identities=17% Similarity=0.407 Sum_probs=16.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037810 250 EGRIFAVYWILISCISLTLLFLYVAELNIE 279 (282)
Q Consensus 250 ~gr~~~~~~il~G~~~~a~~~~~i~~~~~~ 279 (282)
.+.+...+|+..-+..++.++..+.|+...
T Consensus 93 ~~~~~~~lF~~am~~l~~sl~~fl~Ev~ls 122 (130)
T PF11026_consen 93 LSWLVAILFVLAMLLLIASLVLFLREVRLS 122 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555566666666666553
No 71
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=25.40 E-value=5.6e+02 Score=25.25 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=10.0
Q ss_pred eEeeeeccccccc
Q 037810 120 TMTAIGHGDLMPN 132 (282)
Q Consensus 120 t~tTvGyGd~~P~ 132 (282)
.+-..|||=+.|+
T Consensus 289 LIVSlGYGIVkP~ 301 (518)
T KOG2568|consen 289 LIVSLGYGIVKPT 301 (518)
T ss_pred HHHhcCcceEecC
Confidence 3556799999993
No 72
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=24.93 E-value=50 Score=29.94 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=17.6
Q ss_pred chhheeeeeeeEeeeecccccccCcch
Q 037810 110 IIDSVYFCVVTMTAIGHGDLMPNSVLS 136 (282)
Q Consensus 110 ~~~a~yf~~~t~tTvGyGd~~P~t~~g 136 (282)
+..+++|..--+ +..+||..|.-..|
T Consensus 29 ~gt~lFW~llg~-~F~~G~~lp~~~~G 54 (308)
T PF06166_consen 29 IGTALFWGLLGL-IFIFGDYLPPFVVG 54 (308)
T ss_pred cchHHHHHHHHH-HHHcCccchhHHHH
Confidence 388888876654 45679988854333
No 73
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=24.28 E-value=2.3e+02 Score=26.71 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=20.2
Q ss_pred cccchhheeeeeeeE-eeeeccccc-ccCcchhHHHHHHHHhH
Q 037810 107 LDGIIDSVYFCVVTM-TAIGHGDLM-PNSVLSKLLVCAFVLTG 147 (282)
Q Consensus 107 ~~~~~~a~yf~~~t~-tTvGyGd~~-P~t~~gr~~~~~~~~~G 147 (282)
|.++..|+.-.+..+ -..+|+|+. +....|.++...|.++-
T Consensus 364 f~s~~~s~~tl~~~l~g~~~~~~~~~~~~~lg~l~~~~~~~~~ 406 (425)
T PF08016_consen 364 FSSFSSSLVTLFRMLLGDFDYDELYQANPVLGPLFFFSFMFLV 406 (425)
T ss_pred cCCHHHHHHHHHHHhcCCCchhhhhcccccHHHHHHHHHHHHH
Confidence 566676665443322 223455442 34455666555555543
No 74
>PF11167 DUF2953: Protein of unknown function (DUF2953); InterPro: IPR021338 This family of proteins has no known function.
Probab=22.91 E-value=54 Score=21.22 Aligned_cols=25 Identities=28% Similarity=0.741 Sum_probs=16.1
Q ss_pred eeeecCCcccCCccchhhHHHHHHHHHH
Q 037810 237 TTLGCGDMSFSKSEGRIFAVYWILISCI 264 (282)
Q Consensus 237 tTIGyGD~~p~~~~gr~~~~~~il~G~~ 264 (282)
+++|+||-. . .|.+...+|.+.|..
T Consensus 1 ~~~G~~Daa--~-Tgi~~G~l~~~~~~l 25 (53)
T PF11167_consen 1 TTIGLGDAA--D-TGILYGLLWAIKGIL 25 (53)
T ss_pred CeeeccCHH--H-HHHHHHHHHHHHHHH
Confidence 478999933 2 456666677666654
No 75
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=22.43 E-value=1.3e+02 Score=20.27 Aligned_cols=29 Identities=14% Similarity=0.246 Sum_probs=19.0
Q ss_pred cccchhhhhhhhhhhhhHHHHhhhhhhhc
Q 037810 193 SKVRYKCIKILISLPLLILVSAVFQVTID 221 (282)
Q Consensus 193 ~~~r~k~~~~~~~~~~~~~~ga~~~~~~E 221 (282)
...++++.-.++-+++++++|+.+|..+.
T Consensus 31 ~e~kypvgPwLlglFvFVVcGSa~FqIIr 59 (65)
T KOG3491|consen 31 KEKKYPVGPWLLGLFVFVVCGSALFQIIR 59 (65)
T ss_pred ccccCCcchHHHHHHHHHhhcHHHHHHHH
Confidence 33456655555556668888998887654
No 76
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=22.40 E-value=1.9e+02 Score=17.50 Aligned_cols=22 Identities=9% Similarity=0.188 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037810 257 YWILISCISLTLLFLYVAELNI 278 (282)
Q Consensus 257 ~~il~G~~~~a~~~~~i~~~~~ 278 (282)
-|+.+|+..+..++..++....
T Consensus 15 ~Wi~F~l~mi~vFi~li~ytl~ 36 (38)
T PF09125_consen 15 GWIAFALAMILVFIALIGYTLA 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3777788777777777766543
No 77
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=21.89 E-value=16 Score=29.70 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=34.6
Q ss_pred cchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHH
Q 037810 109 GIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFAL 153 (282)
Q Consensus 109 ~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~ 153 (282)
...++.|+...+++++|||+..|.+..+.......++.+......
T Consensus 117 ~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 161 (212)
T COG1226 117 ARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDSV 161 (212)
T ss_pred EEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCCchh
Confidence 446777888899999999999998888887777766666554444
No 78
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=20.97 E-value=5.2e+02 Score=21.99 Aligned_cols=46 Identities=7% Similarity=0.157 Sum_probs=31.2
Q ss_pred cccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 037810 130 MPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFNKHAVLIVKALH 176 (282)
Q Consensus 130 ~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~~~~~~~~~~l~ 176 (282)
+++...=|+++.-=.++.+.++++ ++=+.+++..++.+++..+...
T Consensus 124 v~r~~~l~VlAASn~Ii~~~LvGV-LvLQaG~~YAe~~~~~~~~~~~ 169 (196)
T PF08229_consen 124 VDREDGLRVLAASNTIIALVLVGV-LVLQAGQWYAERKDAKELEEFE 169 (196)
T ss_pred ccHHHHHHHHHHhhHHHHHHHHHH-HHHHhhHHHHhhhhHHHHHHHH
Confidence 344555566777777777788888 8888899998766655444433
Done!