Query 037810
Match_columns 282
No_of_seqs 365 out of 2376
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 07:14:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ukm_A Potassium channel subfa 100.0 3E-38 1E-42 279.0 6.2 199 75-281 15-265 (280)
2 3um7_A Potassium channel subfa 100.0 6.5E-37 2.2E-41 274.2 9.7 196 75-278 34-284 (309)
3 3ldc_A Calcium-gated potassium 99.7 3E-19 1E-23 130.0 2.0 77 201-277 5-81 (82)
4 2k1e_A Water soluble analogue 99.7 6.4E-19 2.2E-23 133.8 2.7 83 199-281 8-97 (103)
5 2k1e_A Water soluble analogue 99.7 3.5E-18 1.2E-22 129.7 6.5 91 72-167 7-97 (103)
6 3ouf_A Potassium channel prote 99.7 1.3E-18 4.3E-23 130.7 2.2 81 199-279 7-87 (97)
7 3eff_K Voltage-gated potassium 99.7 5.2E-18 1.8E-22 135.6 4.9 88 75-167 10-97 (139)
8 2q67_A Potassium channel prote 99.7 1.9E-18 6.5E-23 133.5 1.0 79 200-278 25-103 (114)
9 3eff_K Voltage-gated potassium 99.7 3.3E-18 1.1E-22 136.8 0.2 82 199-280 8-96 (139)
10 2ih3_C Voltage-gated potassium 99.7 8.2E-18 2.8E-22 131.5 1.9 80 202-281 32-118 (122)
11 2a9h_A Voltage-gated potassium 99.7 3E-17 1E-21 133.3 5.3 84 78-166 57-140 (155)
12 4h33_A LMO2059 protein; bilaye 99.7 6.2E-18 2.1E-22 134.8 1.0 73 209-281 26-100 (137)
13 3ldc_A Calcium-gated potassium 99.7 9.9E-17 3.4E-21 116.6 6.1 78 74-163 4-81 (82)
14 2a9h_A Voltage-gated potassium 99.7 1.8E-17 6.2E-22 134.7 2.4 79 203-281 56-141 (155)
15 2ih3_C Voltage-gated potassium 99.7 1.3E-16 4.3E-21 124.7 6.5 86 78-168 34-119 (122)
16 3vou_A ION transport 2 domain 99.6 3.9E-17 1.3E-21 131.9 2.0 77 199-275 27-103 (148)
17 4h33_A LMO2059 protein; bilaye 99.6 8E-17 2.7E-21 128.4 3.4 58 107-165 41-98 (137)
18 3ouf_A Potassium channel prote 99.6 3.5E-16 1.2E-20 117.3 6.5 82 71-164 5-86 (97)
19 3pjs_K KCSA, voltage-gated pot 99.6 9.2E-18 3.2E-22 138.2 -3.7 81 200-280 36-123 (166)
20 2q67_A Potassium channel prote 99.6 6E-16 2.1E-20 119.4 5.3 79 73-163 24-102 (114)
21 3vou_A ION transport 2 domain 99.6 6.1E-16 2.1E-20 124.9 3.0 77 73-161 27-103 (148)
22 1orq_C Potassium channel; volt 99.5 2.2E-15 7.5E-20 129.4 2.3 84 199-282 133-223 (223)
23 3pjs_K KCSA, voltage-gated pot 99.5 1.2E-16 4E-21 131.6 -6.7 80 81-165 43-122 (166)
24 1orq_C Potassium channel; volt 99.5 3.6E-14 1.2E-18 121.7 6.3 85 77-166 137-221 (223)
25 1xl4_A Inward rectifier potass 99.4 1.4E-13 4.7E-18 123.3 8.6 98 67-165 40-137 (301)
26 1lnq_A MTHK channels, potassiu 99.4 2.1E-15 7.1E-20 137.1 -4.4 82 199-280 20-101 (336)
27 3ukm_A Potassium channel subfa 99.4 1.2E-13 4.2E-18 121.8 4.7 80 77-167 179-265 (280)
28 3um7_A Potassium channel subfa 99.4 2.7E-13 9.1E-18 121.3 3.9 73 80-164 206-284 (309)
29 2qks_A KIR3.1-prokaryotic KIR 99.4 1.5E-12 5.2E-17 117.4 8.7 57 108-165 77-133 (321)
30 1p7b_A Integral membrane chann 99.3 4.4E-13 1.5E-17 121.4 4.9 96 68-165 55-151 (333)
31 4gx0_A TRKA domain protein; me 99.3 1.5E-12 5.3E-17 126.1 6.6 85 75-165 22-107 (565)
32 3beh_A MLL3241 protein; transm 99.3 1.4E-12 4.7E-17 119.3 5.8 81 81-166 137-217 (355)
33 3beh_A MLL3241 protein; transm 99.3 3.4E-13 1.2E-17 123.4 1.6 83 198-280 128-217 (355)
34 1xl4_A Inward rectifier potass 99.3 8.3E-13 2.8E-17 118.2 1.8 58 223-280 81-138 (301)
35 2r9r_B Paddle chimera voltage 99.3 4E-12 1.4E-16 121.9 6.3 82 83-165 349-430 (514)
36 4gx0_A TRKA domain protein; me 99.3 1E-12 3.6E-17 127.3 2.2 75 203-277 24-105 (565)
37 1p7b_A Integral membrane chann 99.2 2E-12 6.8E-17 117.1 2.3 73 207-280 72-152 (333)
38 2qks_A KIR3.1-prokaryotic KIR 99.2 3.7E-12 1.3E-16 114.9 2.2 59 222-280 76-134 (321)
39 1lnq_A MTHK channels, potassiu 99.2 1.6E-13 5.5E-18 124.6 -8.1 77 79-167 26-102 (336)
40 3sya_A G protein-activated inw 99.0 5.3E-10 1.8E-14 101.1 8.6 57 107-164 89-147 (340)
41 2r9r_B Paddle chimera voltage 99.0 9.7E-11 3.3E-15 112.3 1.5 69 210-279 355-430 (514)
42 3spc_A Inward-rectifier K+ cha 98.9 3E-09 1E-13 96.3 9.1 56 107-163 92-149 (343)
43 3sya_A G protein-activated inw 98.8 3.1E-09 1E-13 96.2 3.3 58 223-280 90-149 (340)
44 3spc_A Inward-rectifier K+ cha 98.7 6.9E-09 2.4E-13 93.9 2.4 57 223-279 93-151 (343)
45 3rvy_A ION transport protein; 98.5 5.3E-08 1.8E-12 86.2 3.1 60 105-165 176-241 (285)
46 3rvy_A ION transport protein; 98.2 3.7E-07 1.2E-11 80.7 0.9 59 223-281 179-243 (285)
47 4dxw_A Navrh, ION transport pr 96.1 0.005 1.7E-07 52.0 4.6 66 97-163 153-223 (229)
48 3pjz_A Potassium uptake protei 95.3 0.0099 3.4E-07 56.3 3.6 144 107-262 304-467 (494)
49 3kg2_A Glutamate receptor 2; I 94.4 0.015 5.1E-07 57.9 2.3 54 225-279 564-617 (823)
50 4dxw_A Navrh, ION transport pr 94.1 0.017 5.8E-07 48.7 1.8 60 223-282 164-228 (229)
51 3kg2_A Glutamate receptor 2; I 92.1 0.1 3.5E-06 51.8 4.2 54 109-164 563-616 (823)
52 3pjz_A Potassium uptake protei 79.6 0.5 1.7E-05 44.6 0.9 17 111-127 208-224 (494)
53 4f4l_A ION transport protein; 49.0 7 0.00024 28.8 1.6 58 106-163 35-97 (112)
54 2knc_B Integrin beta-3; transm 21.4 2E+02 0.0068 19.5 6.5 15 155-169 30-44 (79)
No 1
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=100.00 E-value=3e-38 Score=279.03 Aligned_cols=199 Identities=15% Similarity=0.235 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc---------------------------------------C-----CCCCCCcccc
Q 037810 75 KAVVFLAIYLGIGTICFYAVKSQIK---------------------------------------G-----MKNDGILDGI 110 (282)
Q Consensus 75 ~~~~~l~~~l~~g~~~~~~~~~~~e---------------------------------------~-----~~~~~~~~~~ 110 (282)
.+++.+++|+++|+.+|..+|.+.| | +......|++
T Consensus 15 lLil~~~~Yl~~GA~vF~~LE~p~E~~~r~~~~~~~~~fl~~~~~~s~~~l~~~~~~~~~a~~~g~~~~~~~~~~~~w~~ 94 (280)
T 3ukm_A 15 FLVLGYLLYLVFGAVVFSSVELPYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEASNYGVSVLSQASGNWNWDF 94 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHTTTCCCC------CCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCccccCCCCCCCCCh
Confidence 4455568899999999999998776 1 1122335889
Q ss_pred hhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccccccccccccc
Q 037810 111 IDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFNKHAVLIVKALHTYEIADLNGILNEI 190 (282)
Q Consensus 111 ~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~e~ 190 (282)
.||+||+++|+|||||||++|.|+.||+++++|+++|++++++ +++.+++.+.+...++..+.++++...+ +
T Consensus 95 ~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~- 166 (280)
T 3ukm_A 95 TSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLL-FLTAVVQRITVHVTRRPVLYFHIRWGFS------K- 166 (280)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSTTTTTC------C------C-
T ss_pred hcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC------h-
Confidence 9999999999999999999999999999999999999999999 9999888775533222122222111100 0
Q ss_pred cccccchhhhhhhhhhhhhHHHHhhhhhhhc-cCCCccceeeEEeeeeeeecCCcccCCccc-------hhhHHHHHHHH
Q 037810 191 ETSKVRYKCIKILISLPLLILVSAVFQVTID-KMDVVDAICCSCATITTLGCGDMSFSKSEG-------RIFAVYWILIS 262 (282)
Q Consensus 191 ~~~~~r~k~~~~~~~~~~~~~~ga~~~~~~E-~~~~~ds~yf~~vT~tTIGyGD~~p~~~~g-------r~~~~~~il~G 262 (282)
.+......+...+.++++++++|+.+++..| +|+++||+||+++|+|||||||++|.++.| |+++++|+++|
T Consensus 167 ~~~~~~~~~~l~~~~~~~~~~~ga~~~~~~E~~~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~G 246 (280)
T 3ukm_A 167 QVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLG 246 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHH
Confidence 0001111233344555567889999999999 899999999999999999999999999975 99999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 037810 263 CISLTLLFLYVAELNIERR 281 (282)
Q Consensus 263 ~~~~a~~~~~i~~~~~~~~ 281 (282)
++++++.++.++|...+++
T Consensus 247 l~~~~~~~~~i~~~~~~~~ 265 (280)
T 3ukm_A 247 LIAMLVVLETFCELHELKK 265 (280)
T ss_dssp HHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888765
No 2
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.5e-37 Score=274.22 Aligned_cols=196 Identities=19% Similarity=0.292 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc---------------------------------------CCC------C--CCCc
Q 037810 75 KAVVFLAIYLGIGTICFYAVKSQIK---------------------------------------GMK------N--DGIL 107 (282)
Q Consensus 75 ~~~~~l~~~l~~g~~~~~~~~~~~e---------------------------------------~~~------~--~~~~ 107 (282)
.+++++++|+++|+.+|..+|.+.| |.. + ....
T Consensus 34 ~Ll~~~~~YL~~GA~vF~~LE~~~E~~~~~~l~~~~~~fl~~~~~~~~~~l~~l~~~v~~A~~~Gv~~~~~~~~~~~~~~ 113 (309)
T 3um7_A 34 ALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELGLLIKEVADALGGGADPETQSTSQSSHSA 113 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHGGGTSSCCCSCSHHHHHHHHHHHHHHHTTCCCSSCCCC-----C
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCCccccccCCCCCCC
Confidence 4566788999999999999998876 110 0 1124
Q ss_pred ccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccccccccc
Q 037810 108 DGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFNKHAVLIVKALHTYEIADLNGIL 187 (282)
Q Consensus 108 ~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 187 (282)
|+|.||+||+++|+|||||||++|.|..||+++++|+++|++++++ +++.+++.+.+..++.. +++++.. . +
T Consensus 114 w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~-~~~~i~~~l~~~~~~~i-~~le~~~--~-~--- 185 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGI-LLAGVGDRLGSSLRHGI-GHIEAIF--L-K--- 185 (309)
T ss_dssp CSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHT-HHHHHHH--T-T---
T ss_pred CChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhH-HHHHHHH--h-c---
Confidence 8999999999999999999999999999999999999999999999 99999988866332211 1111100 0 0
Q ss_pred ccccccccch--hhhhhhhhhhhhHHHHhhhhhhhccCCCccceeeEEeeeeeeecCCcccCCccchh------hHHHHH
Q 037810 188 NEIETSKVRY--KCIKILISLPLLILVSAVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRI------FAVYWI 259 (282)
Q Consensus 188 ~e~~~~~~r~--k~~~~~~~~~~~~~~ga~~~~~~E~~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~------~~~~~i 259 (282)
........+. .+...+..+++++++|+++++..|+|+|+||+||+++|+|||||||++|.++.||. ++++|+
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~l~~ga~~~~~~E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~i 265 (309)
T 3um7_A 186 WHVPPELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWI 265 (309)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHH
Confidence 0000111111 12223333456788999999999999999999999999999999999999999985 999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037810 260 LISCISLTLLFLYVAELNI 278 (282)
Q Consensus 260 l~G~~~~a~~~~~i~~~~~ 278 (282)
++|++++++.++.+++.+.
T Consensus 266 l~Gl~~~a~~~~~i~~~~~ 284 (309)
T 3um7_A 266 LLGLAYFASVLTTIGNWLR 284 (309)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765
No 3
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.74 E-value=3e-19 Score=130.01 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=70.8
Q ss_pred hhhhhhhhhHHHHhhhhhhhccCCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037810 201 KILISLPLLILVSAVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELN 277 (282)
Q Consensus 201 ~~~~~~~~~~~~ga~~~~~~E~~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~ 277 (282)
..+.+++.+++.|+..++..|+|++.||+||+++|+|||||||++|.++.||++++++++.|+..+++.++.+++.+
T Consensus 5 ~~~~l~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 5 RILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556788899999999999999999999999999999999999999999999999999999999999999876
No 4
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.73 E-value=6.4e-19 Score=133.80 Aligned_cols=83 Identities=24% Similarity=0.155 Sum_probs=74.7
Q ss_pred hhhhhhhhhhhHHHHhhhhhhhccC-------CCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHH
Q 037810 199 CIKILISLPLLILVSAVFQVTIDKM-------DVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFL 271 (282)
Q Consensus 199 ~~~~~~~~~~~~~~ga~~~~~~E~~-------~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~ 271 (282)
++.++.++++++++++.+++..|+| ++.||+||+++|+|||||||++|.++.||+++++++++|+.+++++++
T Consensus 8 ~l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~ 87 (103)
T 2k1e_A 8 AQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTA 87 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666788899999999986 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 037810 272 YVAELNIERR 281 (282)
Q Consensus 272 ~i~~~~~~~~ 281 (282)
.+++.+.+++
T Consensus 88 ~i~~~~~~~~ 97 (103)
T 2k1e_A 88 ALATDFVRRE 97 (103)
T ss_dssp HHHTTGGGHH
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 5
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.73 E-value=3.5e-18 Score=129.69 Aligned_cols=91 Identities=21% Similarity=0.224 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHH
Q 037810 72 NTRKAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALF 151 (282)
Q Consensus 72 ~~~~~~~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~ 151 (282)
......+.+++++++++.+++..|. +.+++.++++.||+||+++|+|||||||++|.|+.||+++++++++|+.++
T Consensus 7 ~~l~~~~~~~~~~~~~a~~~~~~E~----~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~ 82 (103)
T 2k1e_A 7 EAQKAEEELQKVLEEASKKAVEAER----GAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVF 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT----TSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcc----CCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHH
Confidence 3344455566666778888886654 333455678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHH
Q 037810 152 ALLVLAKAVDYLFNKH 167 (282)
Q Consensus 152 ~~i~~~~~~~~~~~~~ 167 (282)
++ .++.+.+.+.++.
T Consensus 83 ~~-~~~~i~~~~~~~~ 97 (103)
T 2k1e_A 83 AL-VTAALATDFVRRE 97 (103)
T ss_dssp HH-THHHHHTTGGGHH
T ss_pred HH-HHHHHHHHHHHHH
Confidence 99 9998888886544
No 6
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.71 E-value=1.3e-18 Score=130.70 Aligned_cols=81 Identities=23% Similarity=0.326 Sum_probs=72.8
Q ss_pred hhhhhhhhhhhHHHHhhhhhhhccCCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037810 199 CIKILISLPLLILVSAVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNI 278 (282)
Q Consensus 199 ~~~~~~~~~~~~~~ga~~~~~~E~~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~ 278 (282)
+...+.+++++++.|+..++..|+|++.||+||+++|+|||||||++|.++.||+++++++++|+.+++.+++.+++...
T Consensus 7 ~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~ 86 (97)
T 3ouf_A 7 FQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 86 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555567888999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred h
Q 037810 279 E 279 (282)
Q Consensus 279 ~ 279 (282)
.
T Consensus 87 ~ 87 (97)
T 3ouf_A 87 L 87 (97)
T ss_dssp H
T ss_pred H
Confidence 3
No 7
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.71 E-value=5.2e-18 Score=135.64 Aligned_cols=88 Identities=24% Similarity=0.381 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHH
Q 037810 75 KAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALL 154 (282)
Q Consensus 75 ~~~~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i 154 (282)
...+++++++++++.+++..|.. .+++.+|++.||+||+++|+|||||||++|.|+.||+++++++++|++++++
T Consensus 10 ~~~~~~~~~~~~~a~~~~~~e~~----~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~- 84 (139)
T 3eff_K 10 AATVLLVIVLLAGSYLAVLAERG----APGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGL- 84 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSS----CTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----CCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHH-
Confidence 34445556666777777766543 2335578889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHH
Q 037810 155 VLAKAVDYLFNKH 167 (282)
Q Consensus 155 ~~~~~~~~~~~~~ 167 (282)
+++.+++.+.++.
T Consensus 85 ~~~~i~~~~~~~~ 97 (139)
T 3eff_K 85 VTAALATWFVGRE 97 (139)
T ss_dssp HHHHHTTTTTHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998888776533
No 8
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.70 E-value=1.9e-18 Score=133.54 Aligned_cols=79 Identities=23% Similarity=0.343 Sum_probs=71.1
Q ss_pred hhhhhhhhhhHHHHhhhhhhhccCCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037810 200 IKILISLPLLILVSAVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNI 278 (282)
Q Consensus 200 ~~~~~~~~~~~~~ga~~~~~~E~~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~ 278 (282)
...+.++++++++|+++++..|+|++.||+||+++|+|||||||++|.++.||+++++++++|+.+++..++.+++.+.
T Consensus 25 ~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~ 103 (114)
T 2q67_A 25 QVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 103 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455557788999899999999999999999999999999999999999999999999999999999999988764
No 9
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.68 E-value=3.3e-18 Score=136.79 Aligned_cols=82 Identities=23% Similarity=0.272 Sum_probs=73.7
Q ss_pred hhhhhhhhhhhHHHHhhhhhhhcc-------CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHH
Q 037810 199 CIKILISLPLLILVSAVFQVTIDK-------MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFL 271 (282)
Q Consensus 199 ~~~~~~~~~~~~~~ga~~~~~~E~-------~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~ 271 (282)
+...+.++++++++++.+++..|+ |+|.||+||+++|+|||||||++|.++.||+++++++++|+++++++++
T Consensus 8 ~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~ 87 (139)
T 3eff_K 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTA 87 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566688889999999998 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 037810 272 YVAELNIER 280 (282)
Q Consensus 272 ~i~~~~~~~ 280 (282)
.+++.+.++
T Consensus 88 ~i~~~~~~~ 96 (139)
T 3eff_K 88 ALATWFVGR 96 (139)
T ss_dssp HHTTTTTHH
T ss_pred HHHHHHHHH
Confidence 998877654
No 10
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.67 E-value=8.2e-18 Score=131.53 Aligned_cols=80 Identities=23% Similarity=0.317 Sum_probs=72.0
Q ss_pred hhhhhhhhHHHHhhhhhhhcc-------CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 037810 202 ILISLPLLILVSAVFQVTIDK-------MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVA 274 (282)
Q Consensus 202 ~~~~~~~~~~~ga~~~~~~E~-------~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~ 274 (282)
.+..+++++++++.+++..|+ |++.||+||+++|+|||||||++|.++.||++++++++.|+.++++.++.++
T Consensus 32 ~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~ 111 (122)
T 2ih3_C 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALA 111 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444567788888999997 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 037810 275 ELNIERR 281 (282)
Q Consensus 275 ~~~~~~~ 281 (282)
+.+.|++
T Consensus 112 ~~~~~~~ 118 (122)
T 2ih3_C 112 TWFVGRE 118 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 11
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.67 E-value=3e-17 Score=133.34 Aligned_cols=84 Identities=23% Similarity=0.395 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHH
Q 037810 78 VFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLA 157 (282)
Q Consensus 78 ~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~ 157 (282)
+.+++++++++.+++..| ++.+++.++++.||+||+++|+|||||||++|.|+.||+++++++++|+.++++ .++
T Consensus 57 ~~~~~~i~~~a~~~~~~E----~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~-~~~ 131 (155)
T 2a9h_A 57 VLLVIVLLAGSYLAVLAE----RGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGL-VFA 131 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH----TTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHh----ccCCCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHH-HHH
Confidence 334455566777776554 443445578889999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhH
Q 037810 158 KAVDYLFNK 166 (282)
Q Consensus 158 ~~~~~~~~~ 166 (282)
.+.+.+.+.
T Consensus 132 ~i~~~~~~~ 140 (155)
T 2a9h_A 132 AVATWFVGR 140 (155)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHHH
Confidence 888888653
No 12
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.67 E-value=6.2e-18 Score=134.84 Aligned_cols=73 Identities=23% Similarity=0.304 Sum_probs=62.2
Q ss_pred hHHHHhhhhhhhc--cCCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037810 209 LILVSAVFQVTID--KMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNIERR 281 (282)
Q Consensus 209 ~~~~ga~~~~~~E--~~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~~~~ 281 (282)
++++++..++..| .|+|.||+||+++|+|||||||++|.++.||+++++++++|+++++.+++.+++.+.+.+
T Consensus 26 ~~~~~~~~~~~~e~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 100 (137)
T 4h33_A 26 LVIIIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKK 100 (137)
T ss_dssp HHHHTHHHHHHHCSSCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444 499999999999999999999999999999999999999999999999999998887543
No 13
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.66 E-value=9.9e-17 Score=116.57 Aligned_cols=78 Identities=23% Similarity=0.540 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHH
Q 037810 74 RKAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFAL 153 (282)
Q Consensus 74 ~~~~~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~ 153 (282)
.++.++++.++++|+.+|+..| +| ++ .||+||+++|+||+||||++|.|+.||++++++++.|++++++
T Consensus 4 ~~~~~l~~~~~~~g~~~~~~~e----~~---~~----~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~ 72 (82)
T 3ldc_A 4 TRILLLVLAVIIYGTAGFHFIE----GE---SW----TVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAV 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----CC---CH----HHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----cC---CH----HHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 3455566777788988888664 32 44 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 037810 154 LVLAKAVDYL 163 (282)
Q Consensus 154 i~~~~~~~~~ 163 (282)
.++.+++.+
T Consensus 73 -~~~~i~~~l 81 (82)
T 3ldc_A 73 -AVERLLEFL 81 (82)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHHH
Confidence 998887754
No 14
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.66 E-value=1.8e-17 Score=134.65 Aligned_cols=79 Identities=28% Similarity=0.325 Sum_probs=71.9
Q ss_pred hhhhhhhHHHHhhhhhhhccC-------CCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 037810 203 LISLPLLILVSAVFQVTIDKM-------DVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAE 275 (282)
Q Consensus 203 ~~~~~~~~~~ga~~~~~~E~~-------~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~ 275 (282)
+..+++++++++.+++..|+| ++.||+||+++|+|||||||++|.++.||+++++++++|++++++.++.+++
T Consensus 56 ~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~ 135 (155)
T 2a9h_A 56 TVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVAT 135 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445678899999999987 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc
Q 037810 276 LNIERR 281 (282)
Q Consensus 276 ~~~~~~ 281 (282)
.+.++.
T Consensus 136 ~~~~~~ 141 (155)
T 2a9h_A 136 WFVGRE 141 (155)
T ss_dssp HHHSCC
T ss_pred HHHHHH
Confidence 998765
No 15
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.65 E-value=1.3e-16 Score=124.74 Aligned_cols=86 Identities=21% Similarity=0.346 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHH
Q 037810 78 VFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLA 157 (282)
Q Consensus 78 ~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~ 157 (282)
..+++++++++.+++..|+. .+++.+|++.||+||+++|+|||||||++|.|+.||+++++++++|+.++++ .++
T Consensus 34 ~~~~~~~~~~a~~~~~~E~~----~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~-~~~ 108 (122)
T 2ih3_C 34 VLLVIVLLAGSYLAVLAERG----APGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGL-VTA 108 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----STTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHhhheeeec----CCCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHH-HHH
Confidence 34445556677777766543 2334578889999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhHHH
Q 037810 158 KAVDYLFNKHA 168 (282)
Q Consensus 158 ~~~~~~~~~~~ 168 (282)
.+++.+.+..+
T Consensus 109 ~i~~~~~~~~~ 119 (122)
T 2ih3_C 109 ALATWFVGREQ 119 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888866443
No 16
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.63 E-value=3.9e-17 Score=131.92 Aligned_cols=77 Identities=22% Similarity=0.331 Sum_probs=68.8
Q ss_pred hhhhhhhhhhhHHHHhhhhhhhccCCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 037810 199 CIKILISLPLLILVSAVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAE 275 (282)
Q Consensus 199 ~~~~~~~~~~~~~~ga~~~~~~E~~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~ 275 (282)
+...+.+++++++.|++++...|+|+|.||+||+++|+|||||||++|.++.||+++++|+++|+++++.+++.+++
T Consensus 27 ~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~ 103 (148)
T 3vou_A 27 FQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAV 103 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555557788888888999999999999999999999999999999999999999999999999999998876
No 17
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.63 E-value=8e-17 Score=128.37 Aligned_cols=58 Identities=21% Similarity=0.569 Sum_probs=54.4
Q ss_pred cccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 037810 107 LDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFN 165 (282)
Q Consensus 107 ~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~ 165 (282)
+|+|.||+||+++|+|||||||++|.|+.||+++++++++|++++++ +++.+++.+.+
T Consensus 41 ~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~-~~~~i~~~~~~ 98 (137)
T 4h33_A 41 INNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGM-ITSTITNFFRC 98 (137)
T ss_dssp CCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHH-HHHHHHTTTTT
T ss_pred CCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 56679999999999999999999999999999999999999999999 99999888754
No 18
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.63 E-value=3.5e-16 Score=117.31 Aligned_cols=82 Identities=28% Similarity=0.449 Sum_probs=68.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHH
Q 037810 71 PNTRKAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMAL 150 (282)
Q Consensus 71 ~~~~~~~~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~ 150 (282)
+....+.+.+++++++|+..|... |+ |++.||+||+++|+|||||||++|.|+.||+++++++++|+++
T Consensus 5 ~~~~~~~~~~~~~~~~g~~~~~~~----e~-------~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~ 73 (97)
T 3ouf_A 5 KEFQVLFVLTILTLISGTIFYSTV----EG-------LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----SC-------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----cC-------CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 345556666667777788887744 32 3449999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 037810 151 FALLVLAKAVDYLF 164 (282)
Q Consensus 151 ~~~i~~~~~~~~~~ 164 (282)
+++ +++.+++.+.
T Consensus 74 ~~~-~i~~i~~~~~ 86 (97)
T 3ouf_A 74 VFG-FIHKLAVNVQ 86 (97)
T ss_dssp HHH-HHHHHHHHTH
T ss_pred HHH-HHHHHHHHHh
Confidence 999 9998887764
No 19
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.61 E-value=9.2e-18 Score=138.16 Aligned_cols=81 Identities=22% Similarity=0.260 Sum_probs=71.2
Q ss_pred hhhhhhhhhhHHHHhhhhhhhcc-------CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHH
Q 037810 200 IKILISLPLLILVSAVFQVTIDK-------MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLY 272 (282)
Q Consensus 200 ~~~~~~~~~~~~~ga~~~~~~E~-------~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~ 272 (282)
...+.++++++++++.+++..|+ |+|.||+||+++|+|||||||++|.++.||+++++++++|+++++++++.
T Consensus 36 ~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~ 115 (166)
T 3pjs_K 36 GAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAA 115 (166)
T ss_dssp TTTSSSSTTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455577888888999998 99999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhh
Q 037810 273 VAELNIER 280 (282)
Q Consensus 273 i~~~~~~~ 280 (282)
+++.+.+.
T Consensus 116 i~~~~~~~ 123 (166)
T 3pjs_K 116 LATWFVGQ 123 (166)
T ss_dssp SSSSSSSS
T ss_pred HHHHHHHH
Confidence 88776643
No 20
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.60 E-value=6e-16 Score=119.42 Aligned_cols=79 Identities=28% Similarity=0.471 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHH
Q 037810 73 TRKAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFA 152 (282)
Q Consensus 73 ~~~~~~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~ 152 (282)
.....+++++++++|+++|... |+ +++ .||+||+++|+|||||||++|.|+.||+++++++++|+++++
T Consensus 24 ~~~~~~~~~~~~~~g~~~~~~~----e~---~~~----~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~ 92 (114)
T 2q67_A 24 FQVLFVLTILTLISGTIFYSTV----EG---LRP----IDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVF 92 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----SC---CCH----HHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----cC---CCH----HHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHH
Confidence 3455556666777788887654 33 244 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 037810 153 LLVLAKAVDYL 163 (282)
Q Consensus 153 ~i~~~~~~~~~ 163 (282)
+ .++.+.+.+
T Consensus 93 ~-~~~~l~~~~ 102 (114)
T 2q67_A 93 G-FIHKLAVNV 102 (114)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HHHHHHHHH
Confidence 9 888887766
No 21
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.57 E-value=6.1e-16 Score=124.87 Aligned_cols=77 Identities=27% Similarity=0.485 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHH
Q 037810 73 TRKAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFA 152 (282)
Q Consensus 73 ~~~~~~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~ 152 (282)
...+.+++++++++|+++|... |+ |+|.||+||+++|+|||||||++|.|+.||+++++++++|+++++
T Consensus 27 ~~~~~~~~~~~~~~g~~~~~~~----e~-------~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~ 95 (148)
T 3vou_A 27 FQVLFVLTFLTLTSGTIFYSTV----EG-------LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVF 95 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----SC-------CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----cC-------CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 3445555666667777776643 33 344999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 037810 153 LLVLAKAVD 161 (282)
Q Consensus 153 ~i~~~~~~~ 161 (282)
+ .++.++.
T Consensus 96 ~-~~~~~~~ 103 (148)
T 3vou_A 96 G-FIHKLAV 103 (148)
T ss_dssp H-HHHHHHC
T ss_pred H-HHHHHHH
Confidence 9 8887776
No 22
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.52 E-value=2.2e-15 Score=129.36 Aligned_cols=84 Identities=23% Similarity=0.280 Sum_probs=74.1
Q ss_pred hhhhhhhhhhhHHHHhhhhhhhcc-------CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHH
Q 037810 199 CIKILISLPLLILVSAVFQVTIDK-------MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFL 271 (282)
Q Consensus 199 ~~~~~~~~~~~~~~ga~~~~~~E~-------~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~ 271 (282)
+...+.++++++.+++.+++..|+ |++.||+||+++|+|||||||++|.++.||++++++++.|+.++++.++
T Consensus 133 l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~ 212 (223)
T 1orq_C 133 FYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIG 212 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445566778888888998 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 037810 272 YVAELNIERRL 282 (282)
Q Consensus 272 ~i~~~~~~~~~ 282 (282)
.+++.+.|+.+
T Consensus 213 ~i~~~~~~~~r 223 (223)
T 1orq_C 213 TVSNMFQKILV 223 (223)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhC
Confidence 99999998764
No 23
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.50 E-value=1.2e-16 Score=131.55 Aligned_cols=80 Identities=23% Similarity=0.345 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHH
Q 037810 81 AIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAV 160 (282)
Q Consensus 81 ~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~ 160 (282)
++++++++++++..| +..+++.+|+|.||+||+++|+|||||||++|.|+.||+++++++++|++++++ +++.++
T Consensus 43 ~~~~~~~a~~~~~~e----~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~-~~~~i~ 117 (166)
T 3pjs_K 43 VIVLLAGSYLAVLAE----RGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGL-VTAALA 117 (166)
T ss_dssp TTTTTTTSSSSSSTT----SSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHH-HHTTSS
T ss_pred HHHHHHHHHHHHHHh----cCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 344445555555443 333345568889999999999999999999999999999999999999999999 999888
Q ss_pred HHHHh
Q 037810 161 DYLFN 165 (282)
Q Consensus 161 ~~~~~ 165 (282)
..+.+
T Consensus 118 ~~~~~ 122 (166)
T 3pjs_K 118 TWFVG 122 (166)
T ss_dssp SSSSS
T ss_pred HHHHH
Confidence 87765
No 24
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.47 E-value=3.6e-14 Score=121.71 Aligned_cols=85 Identities=21% Similarity=0.433 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHH
Q 037810 77 VVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVL 156 (282)
Q Consensus 77 ~~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~ 156 (282)
...+++++.+++++++..| +..+++.++++.+|+||+++|+||+||||++|.|+.||++++++++.|+.++++ .+
T Consensus 137 ~~~~~~~~~~~~~~~~~~e----~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~-~i 211 (223)
T 1orq_C 137 FGAVMLTVLYGAFAIYIVE----YPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTL-LI 211 (223)
T ss_dssp HHHHHHHHHHHHHHHHHTT----SSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHH----hCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHH-HH
Confidence 3344444556666666554 323334478899999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhH
Q 037810 157 AKAVDYLFNK 166 (282)
Q Consensus 157 ~~~~~~~~~~ 166 (282)
+.+++.+.++
T Consensus 212 ~~i~~~~~~~ 221 (223)
T 1orq_C 212 GTVSNMFQKI 221 (223)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9988887553
No 25
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.45 E-value=1.4e-13 Score=123.32 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=69.1
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHh
Q 037810 67 AIRRPNTRKAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLT 146 (282)
Q Consensus 67 ~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~ 146 (282)
..++.+++.+++++++..++..++|..+.+..++...+..++++.+|+||+++|+|||||||++|.|+.||+++++.+++
T Consensus 40 ~~l~~~~~~ll~~~~~~~~~~~l~fa~ly~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~ 119 (301)
T 1xl4_A 40 DLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALC 119 (301)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHH
Confidence 34566776555444333323333443331122222223346788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 037810 147 GMALFALLVLAKAVDYLFN 165 (282)
Q Consensus 147 Gi~~~~~i~~~~~~~~~~~ 165 (282)
|+.++++ .++.+...+.+
T Consensus 120 G~~~~a~-~~g~v~~~~~~ 137 (301)
T 1xl4_A 120 GMLGLAV-AASLIYARFTR 137 (301)
T ss_dssp HHHHHHH-HHHHHHHHHTC
T ss_pred HHHHHHH-HHHHHHHHHHh
Confidence 9999999 88777666643
No 26
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.44 E-value=2.1e-15 Score=137.11 Aligned_cols=82 Identities=23% Similarity=0.261 Sum_probs=71.3
Q ss_pred hhhhhhhhhhhHHHHhhhhhhhccCCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037810 199 CIKILISLPLLILVSAVFQVTIDKMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNI 278 (282)
Q Consensus 199 ~~~~~~~~~~~~~~ga~~~~~~E~~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~ 278 (282)
+...+.++++++++|+++|+..|+|+|.||+||+++|+|||||||++|.+..||+++++++++|+.++++.++.+++.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (336)
T 1lnq_A 20 ATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLI 99 (336)
T ss_dssp CSSSTTTTTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555567888999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred hh
Q 037810 279 ER 280 (282)
Q Consensus 279 ~~ 280 (282)
++
T Consensus 100 ~~ 101 (336)
T 1lnq_A 100 NR 101 (336)
T ss_dssp --
T ss_pred HH
Confidence 64
No 27
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=121.76 Aligned_cols=80 Identities=23% Similarity=0.448 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcc-------hhHHHHHHHHhHHH
Q 037810 77 VVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVL-------SKLLVCAFVLTGMA 149 (282)
Q Consensus 77 ~~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~-------gr~~~~~~~~~Gi~ 149 (282)
.+.+++++++|+.+|...|. + |++ .||+||+++|+|||||||++|.|+. ||+++++|+++|++
T Consensus 179 ~~~~~~~~~~ga~~~~~~E~---~---~s~----~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~ 248 (280)
T 3ukm_A 179 FVTVSCFFFIPAAVFSVLED---D---WNF----LESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLI 248 (280)
T ss_dssp HHHHHHHTHHHHHHHHHHSS---S---CCH----HHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHhc---C---Cch----hhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 33445566778888876531 2 355 9999999999999999999999985 59999999999999
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 037810 150 LFALLVLAKAVDYLFNKH 167 (282)
Q Consensus 150 ~~~~i~~~~~~~~~~~~~ 167 (282)
++++ +++.+.+....++
T Consensus 249 ~~~~-~~~~i~~~~~~~~ 265 (280)
T 3ukm_A 249 AMLV-VLETFCELHELKK 265 (280)
T ss_dssp HHHH-HHHHHHTSHHHHH
T ss_pred HHHH-HHHHHHHHHHHHH
Confidence 9999 9999888775543
No 28
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.35 E-value=2.7e-13 Score=121.30 Aligned_cols=73 Identities=27% Similarity=0.501 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchh------HHHHHHHHhHHHHHHH
Q 037810 80 LAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSK------LLVCAFVLTGMALFAL 153 (282)
Q Consensus 80 l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr------~~~~~~~~~Gi~~~~~ 153 (282)
+++++++|+.+|+.. |+| ++ .||+||+++|+|||||||++|.+..|| +++++|+++|++++++
T Consensus 206 ~~~~l~~ga~~~~~~----E~~---~~----~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~ 274 (309)
T 3um7_A 206 CLLFVLTPTFVFCYM----EDW---SK----LEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFAS 274 (309)
T ss_dssp HHHHTHHHHHHHHHH----HCC---CH----HHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----cCC---CH----HHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 345566777777755 333 55 999999999999999999999999998 4999999999999999
Q ss_pred HHHHHHHHHHH
Q 037810 154 LVLAKAVDYLF 164 (282)
Q Consensus 154 i~~~~~~~~~~ 164 (282)
+++.+++.+.
T Consensus 275 -~~~~i~~~~~ 284 (309)
T 3um7_A 275 -VLTTIGNWLR 284 (309)
T ss_dssp -HHHHHHHHTT
T ss_pred -HHHHHHHHHH
Confidence 9988887764
No 29
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.35 E-value=1.5e-12 Score=117.44 Aligned_cols=57 Identities=25% Similarity=0.424 Sum_probs=52.3
Q ss_pred ccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 037810 108 DGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLFN 165 (282)
Q Consensus 108 ~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~~ 165 (282)
++|.+|+||+++|+|||||||++|.|..||+++++.+++|+.++++ .++.+...+.+
T Consensus 77 ~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~-~~g~i~~~~~~ 133 (321)
T 2qks_A 77 AGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIAL-ATGCAFIKMSQ 133 (321)
T ss_dssp TTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHS
T ss_pred cchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4779999999999999999999999999999999999999999999 88877766644
No 30
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.35 E-value=4.4e-13 Score=121.36 Aligned_cols=96 Identities=18% Similarity=0.252 Sum_probs=68.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHh
Q 037810 68 IRRPNTRKAVVFLAIYLGIGTICFYAVKSQIKGM-KNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLT 146 (282)
Q Consensus 68 ~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~e~~-~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~ 146 (282)
.++.+++.+++++++..++..++|. ..+..++. ..+..+++|.+|+||+++|+|||||||++|.|+.||+++++++++
T Consensus 55 ~l~~~~~~ll~~~~~~~l~~~l~fa-lly~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~ 133 (333)
T 1p7b_A 55 ALKVSWPVFFASLAALFVVNNTLFA-LLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFV 133 (333)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHH-TTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHH
Confidence 3555666555444333322333333 33445543 122335677999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 037810 147 GMALFALLVLAKAVDYLFN 165 (282)
Q Consensus 147 Gi~~~~~i~~~~~~~~~~~ 165 (282)
|+.++++ .++.+...+.+
T Consensus 134 G~~~~a~-~ig~i~~~~~~ 151 (333)
T 1p7b_A 134 GMSGIAL-STGLVFARFAR 151 (333)
T ss_dssp HHHHHHH-HHHHHHHHHTS
T ss_pred HHHHHHH-HHHHHHHHHHH
Confidence 9999999 88877776654
No 31
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.31 E-value=1.5e-12 Score=126.08 Aligned_cols=85 Identities=19% Similarity=0.330 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHH
Q 037810 75 KAVVFLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALL 154 (282)
Q Consensus 75 ~~~~~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i 154 (282)
..++++++++++++++|++.++..|+. .|+|.+|+||+++|+|||||||++|.|+.||+++++++++|++++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~e~~-----~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~- 95 (565)
T 4gx0_A 22 LYCAFLLVMLLAYASIFRYLMWHLEGR-----AYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDI- 95 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHH-
Confidence 344455555667788888777667763 34669999999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHh
Q 037810 155 VLAK-AVDYLFN 165 (282)
Q Consensus 155 ~~~~-~~~~~~~ 165 (282)
.++. +.+.+..
T Consensus 96 ~~~~~~~~~~~~ 107 (565)
T 4gx0_A 96 ILPFGFVSMFLA 107 (565)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 7776 5555543
No 32
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.31 E-value=1.4e-12 Score=119.29 Aligned_cols=81 Identities=20% Similarity=0.394 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHH
Q 037810 81 AIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAV 160 (282)
Q Consensus 81 ~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~ 160 (282)
++.+.+++++++..| ++.+.+.+.++.+|+||+++|+||+||||++|.|+.||+++++++++|+.++++ .++.++
T Consensus 137 ~~~~~~~a~~~~~~e----~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~-~~~~i~ 211 (355)
T 3beh_A 137 GVVLFAVALAAYVIE----RDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGL-WAGILA 211 (355)
T ss_dssp HHHHHHHHHHHHHHH----TTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHhh----cCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 333445555555554 333333467889999999999999999999999999999999999999999999 888888
Q ss_pred HHHHhH
Q 037810 161 DYLFNK 166 (282)
Q Consensus 161 ~~~~~~ 166 (282)
+.+.++
T Consensus 212 ~~~~~~ 217 (355)
T 3beh_A 212 TGFYQE 217 (355)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 33
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.30 E-value=3.4e-13 Score=123.38 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=72.4
Q ss_pred hhhhhhhhhhhhHHHHhhhhhhhccC-------CCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHH
Q 037810 198 KCIKILISLPLLILVSAVFQVTIDKM-------DVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLF 270 (282)
Q Consensus 198 k~~~~~~~~~~~~~~ga~~~~~~E~~-------~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~ 270 (282)
++...+.++++++.+++.+++..|++ ++.||+||+++|+|||||||+.|.++.||++++++++.|++++++.+
T Consensus 128 ~l~~~~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~ 207 (355)
T 3beh_A 128 NLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWA 207 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555677888888888975 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 037810 271 LYVAELNIER 280 (282)
Q Consensus 271 ~~i~~~~~~~ 280 (282)
+.+++.+.++
T Consensus 208 ~~i~~~~~~~ 217 (355)
T 3beh_A 208 GILATGFYQE 217 (355)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 34
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.26 E-value=8.3e-13 Score=118.23 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=55.0
Q ss_pred CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037810 223 MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNIER 280 (282)
Q Consensus 223 ~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~~~ 280 (282)
+++.||+||+++|+|||||||++|.+..||+++++++++|+.+++..++.+...+.+.
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~ 138 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 8999999999999999999999999999999999999999999999999988887653
No 35
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.26 E-value=4e-12 Score=121.86 Aligned_cols=82 Identities=26% Similarity=0.414 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 037810 83 YLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDY 162 (282)
Q Consensus 83 ~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~ 162 (282)
+++++..+|....+..|++...+.|.++.+|+||+++|+||+||||++|.|..||+++++++++|+.++++ .++.+.+.
T Consensus 349 ~l~i~~~if~~~~~~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l-~iavI~~~ 427 (514)
T 2r9r_B 349 FLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIAL-PVPVIVSN 427 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHT-THHHHHHH
T ss_pred HHHHHHHHHHhhhheeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHH-HHHHHHHH
Confidence 33445555555545556655556689999999999999999999999999999999999999999999999 77777665
Q ss_pred HHh
Q 037810 163 LFN 165 (282)
Q Consensus 163 ~~~ 165 (282)
+.+
T Consensus 428 f~~ 430 (514)
T 2r9r_B 428 FNY 430 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 36
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.26 E-value=1e-12 Score=127.28 Aligned_cols=75 Identities=21% Similarity=0.360 Sum_probs=60.8
Q ss_pred hhhhhhhHHHHhhhhhh----hcc--CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHH-HHH
Q 037810 203 LISLPLLILVSAVFQVT----IDK--MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLY-VAE 275 (282)
Q Consensus 203 ~~~~~~~~~~ga~~~~~----~E~--~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~-i~~ 275 (282)
++++++++++++++|+. .|+ |+|+||+||+++|+|||||||++|.+..||+++++++++|++++++.++. +.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 103 (565)
T 4gx0_A 24 CAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVS 103 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345555554444 676 99999999999999999999999999999999999999999999999887 444
Q ss_pred HH
Q 037810 276 LN 277 (282)
Q Consensus 276 ~~ 277 (282)
.+
T Consensus 104 ~~ 105 (565)
T 4gx0_A 104 MF 105 (565)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 37
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.23 E-value=2e-12 Score=117.10 Aligned_cols=73 Identities=19% Similarity=0.129 Sum_probs=62.0
Q ss_pred hhhHHHHhhhhhhhcc--------CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037810 207 PLLILVSAVFQVTIDK--------MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNI 278 (282)
Q Consensus 207 ~~~~~~ga~~~~~~E~--------~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~ 278 (282)
++.+++++++++ .|+ ++|.|++||+++|+|||||||++|.+..||+++++++++|+.+++..++.+...+.
T Consensus 72 l~~~l~fally~-~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~ 150 (333)
T 1p7b_A 72 VVNNTLFALLYQ-LGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA 150 (333)
T ss_dssp HHHHHHHHTTTS-SSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666543 342 58999999999999999999999999999999999999999999999999988877
Q ss_pred hh
Q 037810 279 ER 280 (282)
Q Consensus 279 ~~ 280 (282)
+.
T Consensus 151 ~~ 152 (333)
T 1p7b_A 151 RP 152 (333)
T ss_dssp SC
T ss_pred HH
Confidence 54
No 38
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.19 E-value=3.7e-12 Score=114.89 Aligned_cols=59 Identities=20% Similarity=0.118 Sum_probs=55.4
Q ss_pred cCCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037810 222 KMDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNIER 280 (282)
Q Consensus 222 ~~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~~~ 280 (282)
+|+|.||+||+++|+|||||||++|.+..||+++++++++|+.+++..++.+...+.+.
T Consensus 76 ~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 76 PAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp STTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CcchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999999999999999999999999999999887754
No 39
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.17 E-value=1.6e-13 Score=124.58 Aligned_cols=77 Identities=23% Similarity=0.507 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcccchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHH
Q 037810 79 FLAIYLGIGTICFYAVKSQIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAK 158 (282)
Q Consensus 79 ~l~~~l~~g~~~~~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~ 158 (282)
++++++++|+++|+.. |+| ++ .+|+||+++|+||+||||++|.|..||+++++++++|++++++ .++.
T Consensus 26 ~~~~~~~~~~~~~~~~----e~~---~~----~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~-~~~~ 93 (336)
T 1lnq_A 26 LVLAVIIYGTAGFHFI----EGE---SW----TVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAV-AVER 93 (336)
T ss_dssp TTTTSHHHHTTTTTTS----SSC---CS----STTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTT-HHHH
T ss_pred HHHHHHHHHHHHHHHH----hCC---CH----HHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3444556677766543 332 55 9999999999999999999999999999999999999999999 8888
Q ss_pred HHHHHHhHH
Q 037810 159 AVDYLFNKH 167 (282)
Q Consensus 159 ~~~~~~~~~ 167 (282)
+.+.+.+++
T Consensus 94 ~~~~~~~~~ 102 (336)
T 1lnq_A 94 LLEFLINRE 102 (336)
T ss_dssp HTTTC----
T ss_pred HHHHHHHHH
Confidence 888776643
No 40
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=99.03 E-value=5.3e-10 Score=101.13 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=49.9
Q ss_pred cccchhheeeeeeeEeeeeccccccc--CcchhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 037810 107 LDGIIDSVYFCVVTMTAIGHGDLMPN--SVLSKLLVCAFVLTGMALFALLVLAKAVDYLF 164 (282)
Q Consensus 107 ~~~~~~a~yf~~~t~tTvGyGd~~P~--t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~ 164 (282)
..++.+|+||+++|+|||||||++|. ++.|++++.+.+++|+.+.++ ..+.+...+.
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~-~~giv~ak~s 147 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAF-MVGCMFVKIS 147 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 45779999999999999999999996 789999999999999999999 7666655553
No 41
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.97 E-value=9.7e-11 Score=112.27 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=59.0
Q ss_pred HHHHhhhhhhhcc-------CCCccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037810 210 ILVSAVFQVTIDK-------MDVVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNIE 279 (282)
Q Consensus 210 ~~~ga~~~~~~E~-------~~~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~~ 279 (282)
.+.+++ .+..|+ .++.||+||+++|+|||||||+.|.+..||++++++++.|+++++++++.+.+.+.+
T Consensus 355 ~if~~~-~~~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 355 ILFSSA-VYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp HHHHHH-HHHHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHhh-hheeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 445676 488999999999999999999999999999999999999999999999988876653
No 42
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.92 E-value=3e-09 Score=96.35 Aligned_cols=56 Identities=18% Similarity=0.336 Sum_probs=49.1
Q ss_pred cccchhheeeeeeeEeeeecccccc--cCcchhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 037810 107 LDGIIDSVYFCVVTMTAIGHGDLMP--NSVLSKLLVCAFVLTGMALFALLVLAKAVDYL 163 (282)
Q Consensus 107 ~~~~~~a~yf~~~t~tTvGyGd~~P--~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~ 163 (282)
..++.+|+||+++|+|||||||++| .++.|++++.+-+++|+.+.++ .++.+...+
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~-~~giv~ak~ 149 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSF-MIGAIMAKM 149 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4677999999999999999999997 4899999999999999999999 666655544
No 43
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.75 E-value=3.1e-09 Score=96.15 Aligned_cols=58 Identities=21% Similarity=0.148 Sum_probs=52.1
Q ss_pred CCCccceeeEEeeeeeeecCCcccC--CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037810 223 MDVVDAICCSCATITTLGCGDMSFS--KSEGRIFAVYWILISCISLTLLFLYVAELNIER 280 (282)
Q Consensus 223 ~~~~ds~yf~~vT~tTIGyGD~~p~--~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~~~ 280 (282)
-++.|++||+++|+|||||||+.|. ++.|++++.+-+++|+.+.|...+.+..-+.+.
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp 149 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP 149 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4789999999999999999999997 567999999999999999999999887766643
No 44
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.65 E-value=6.9e-09 Score=93.94 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=51.4
Q ss_pred CCCccceeeEEeeeeeeecCCcccC--CccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037810 223 MDVVDAICCSCATITTLGCGDMSFS--KSEGRIFAVYWILISCISLTLLFLYVAELNIE 279 (282)
Q Consensus 223 ~~~~ds~yf~~vT~tTIGyGD~~p~--~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~~ 279 (282)
-++.|++||+++|+|||||||..|. ++.|++++.+-+++|+.++|...+.+..-+.+
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999975 78899999999999999999999888776654
No 45
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.47 E-value=5.3e-08 Score=86.16 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=50.0
Q ss_pred CCcccchhheeeeeeeEeeeecc-ccc-ccCcch----hHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 037810 105 GILDGIIDSVYFCVVTMTAIGHG-DLM-PNSVLS----KLLVCAFVLTGMALFALLVLAKAVDYLFN 165 (282)
Q Consensus 105 ~~~~~~~~a~yf~~~t~tTvGyG-d~~-P~t~~g----r~~~~~~~~~Gi~~~~~i~~~~~~~~~~~ 165 (282)
+.|.++.+|+||.++++||+||| |+. |.+..| +.+.++.++.|+.++.+ .++.+.+.+.+
T Consensus 176 ~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl-~~aii~~~f~~ 241 (285)
T 3rvy_A 176 EWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINL-VVAICVDAMAI 241 (285)
T ss_dssp HHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHH-HHHHHHHHC--
T ss_pred cccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33788899999999999999999 996 887765 77888888889999999 88888777755
No 46
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.15 E-value=3.7e-07 Score=80.71 Aligned_cols=59 Identities=5% Similarity=0.010 Sum_probs=49.8
Q ss_pred CCCccceeeEEeeeeeeecC-Ccc-cCCccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037810 223 MDVVDAICCSCATITTLGCG-DMS-FSKSEG----RIFAVYWILISCISLTLLFLYVAELNIERR 281 (282)
Q Consensus 223 ~~~~ds~yf~~vT~tTIGyG-D~~-p~~~~g----r~~~~~~il~G~~~~a~~~~~i~~~~~~~~ 281 (282)
-++.||+||.++|+||+||| |.. |.+..| +.|+++.++.|+.+++++++.+.+.+.+.+
T Consensus 179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999 996 888766 778888888999999999999999887643
No 47
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=96.09 E-value=0.005 Score=52.04 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=42.9
Q ss_pred hhcCCCCCCCcccchhheeeeeeeEeeeecccccc----cCcchhHHHHHHHHhH-HHHHHHHHHHHHHHHH
Q 037810 97 QIKGMKNDGILDGIIDSVYFCVVTMTAIGHGDLMP----NSVLSKLLVCAFVLTG-MALFALLVLAKAVDYL 163 (282)
Q Consensus 97 ~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGd~~P----~t~~gr~~~~~~~~~G-i~~~~~i~~~~~~~~~ 163 (282)
+..+..+++.|.++.+|+|+.+.++|+.|++|+.. .++.+.++.+.|.++| ..++-+ .++.+.+..
T Consensus 153 ~lf~~~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNl-fiavi~~~f 223 (229)
T 4dxw_A 153 ILFGNDDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNL-VIAILVDVV 223 (229)
T ss_dssp HHTTTTSCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHhccCCcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 33333344458999999999999999999999843 3445555555555554 444444 666555544
No 48
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=95.31 E-value=0.0099 Score=56.28 Aligned_cols=144 Identities=15% Similarity=0.184 Sum_probs=75.7
Q ss_pred cccchhheeeeeeeEeeeecc--cccccCcchhHHHHHHHHhHHHH-----------HHHHHHHHHHHHHHhHHHHHHHH
Q 037810 107 LDGIIDSVYFCVVTMTAIGHG--DLMPNSVLSKLLVCAFVLTGMAL-----------FALLVLAKAVDYLFNKHAVLIVK 173 (282)
Q Consensus 107 ~~~~~~a~yf~~~t~tTvGyG--d~~P~t~~gr~~~~~~~~~Gi~~-----------~~~i~~~~~~~~~~~~~~~~~~~ 173 (282)
...+.+|++-++...||.||. |...-++..+++.++.+++|=+- +.+ ++..+.. ..+
T Consensus 304 ~~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~~GSTaGGIKv~r~~i-l~~~~~~---------el~ 373 (494)
T 3pjz_A 304 YDAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGCAGSTGGGMKVIRILL-LTLQGAR---------ELK 373 (494)
T ss_dssp HHHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSCTTSSCCSSCHHHHHH-HHHHHHH---------HHH
T ss_pred HHHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCCcccCCCchhHHHHHH-HHHHHHH---------HHh
Confidence 345577888888888999996 55555667778888877776322 111 2211111 111
Q ss_pred hhhhcccccccccc-ccccccccchhhhhhhhhhhhhHHHHhhhhhhhccCCCccceeeEEeeeeeeec--CCccc----
Q 037810 174 ALHTYEIADLNGIL-NEIETSKVRYKCIKILISLPLLILVSAVFQVTIDKMDVVDAICCSCATITTLGC--GDMSF---- 246 (282)
Q Consensus 174 ~l~~~~~~~~~~~l-~e~~~~~~r~k~~~~~~~~~~~~~~ga~~~~~~E~~~~~ds~yf~~vT~tTIGy--GD~~p---- 246 (282)
+..+.+...+-+.. +..++ +.-.+....+.+.+..+++++.++.. .+.++.+++.=+..+++|||- |+.-|
T Consensus 374 ~~~~P~~v~~v~~~~r~i~~-~~v~~~~~~~~ly~~~~~~~~~~l~~-~g~~~~~a~~~v~Sal~nvG~s~G~vg~~~~~ 451 (494)
T 3pjz_A 374 RLVHPRAVYTIKVGGSALPQ-RVVDAVWGFFSAYALVFVVCMLGLIA-TGMDELSAFSAVAATLNNLGPGLGEVALHFGD 451 (494)
T ss_dssp HHHCSSSCCCCCSSSCCCTT-THHHHHHHHHHHHHHHHHHHHHHHHH-HSSCHHHHHHHHHHHTTTCCSCCSSSCCCCSS
T ss_pred cccCCCcceeeeECCEECCH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHcCCCCcccccCCCccc
Confidence 11110000000000 00110 11112333333333344555555444 458889999888888888884 43323
Q ss_pred CCccchhhHHHHHHHH
Q 037810 247 SKSEGRIFAVYWILIS 262 (282)
Q Consensus 247 ~~~~gr~~~~~~il~G 262 (282)
-++.+|+..++-|++|
T Consensus 452 L~~~~K~vl~~~M~~G 467 (494)
T 3pjz_A 452 VNDKAKWVLIVSMLFG 467 (494)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3345788888888776
No 49
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=94.39 E-value=0.015 Score=57.89 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=44.1
Q ss_pred CccceeeEEeeeeeeecCCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037810 225 VVDAICCSCATITTLGCGDMSFSKSEGRIFAVYWILISCISLTLLFLYVAELNIE 279 (282)
Q Consensus 225 ~~ds~yf~~vT~tTIGyGD~~p~~~~gr~~~~~~il~G~~~~a~~~~~i~~~~~~ 279 (282)
+.+++|+++.+++..| ++..|.+..+|++..+|.++++++.+..-+.++..++.
T Consensus 564 ~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 564 IFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5588999999999999 78999999999999999999999999999999888874
No 50
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=94.11 E-value=0.017 Score=48.72 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=45.3
Q ss_pred CCCccceeeEEeeeeeeecCCcccC----CccchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhcC
Q 037810 223 MDVVDAICCSCATITTLGCGDMSFS----KSEGRIFAVYWI-LISCISLTLLFLYVAELNIERRL 282 (282)
Q Consensus 223 ~~~~ds~yf~~vT~tTIGyGD~~p~----~~~gr~~~~~~i-l~G~~~~a~~~~~i~~~~~~~~~ 282 (282)
-++.+|+|+.+.++|+.|++|.... ++.+.++.+.|+ +.+..++.++++.+.|-+.|.+|
T Consensus 164 ~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~~~~ 228 (229)
T 4dxw_A 164 GDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVIQKKL 228 (229)
T ss_dssp SSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999997332 223444444444 45678899999999999998765
No 51
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=92.12 E-value=0.1 Score=51.76 Aligned_cols=54 Identities=19% Similarity=0.392 Sum_probs=43.5
Q ss_pred cchhheeeeeeeEeeeecccccccCcchhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 037810 109 GIIDSVYFCVVTMTAIGHGDLMPNSVLSKLLVCAFVLTGMALFALLVLAKAVDYLF 164 (282)
Q Consensus 109 ~~~~a~yf~~~t~tTvGyGd~~P~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~~ 164 (282)
++.+++||++.+++..| ++..|++..+|++.++|.++++.+... ..+.+..++.
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~-Yta~L~s~Lt 616 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISS-YTANLAAFLT 616 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 46789999999999999 788999999999999999999999999 8888887774
No 52
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=79.63 E-value=0.5 Score=44.58 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=15.9
Q ss_pred hhheeeeeeeEeeeecc
Q 037810 111 IDSVYFCVVTMTAIGHG 127 (282)
Q Consensus 111 ~~a~yf~~~t~tTvGyG 127 (282)
.||+..++.++.|-||.
T Consensus 208 fdAi~Ha~Sa~~tgGFs 224 (494)
T 3pjz_A 208 FDAISHSFSTIAIGGFS 224 (494)
T ss_dssp HHHHTTTHHHHTTCCCC
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 89999999999999985
No 53
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=48.97 E-value=7 Score=28.80 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=28.2
Q ss_pred CcccchhheeeeeeeEeeeeccccc--c---cCcchhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 037810 106 ILDGIIDSVYFCVVTMTAIGHGDLM--P---NSVLSKLLVCAFVLTGMALFALLVLAKAVDYL 163 (282)
Q Consensus 106 ~~~~~~~a~yf~~~t~tTvGyGd~~--P---~t~~gr~~~~~~~~~Gi~~~~~i~~~~~~~~~ 163 (282)
.|.++..|+.-.+..+|+=|-.|.. | ..+...++.+.|+++|-.++.-.+++.+.+.+
T Consensus 35 ~F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfiaVi~~~f 97 (112)
T 4f4l_A 35 WFGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFIGIIVDAM 97 (112)
T ss_dssp HHSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred cccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777666666555543221 2 34455566666666654333222445444444
No 54
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.38 E-value=2e+02 Score=19.54 Aligned_cols=15 Identities=7% Similarity=0.166 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhHHHH
Q 037810 155 VLAKAVDYLFNKHAV 169 (282)
Q Consensus 155 ~~~~~~~~~~~~~~~ 169 (282)
++-.+...+.+++|.
T Consensus 30 liwk~~~~i~DrrE~ 44 (79)
T 2knc_B 30 LIWKLLITIHDRKEF 44 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334433444444443
Done!