BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037811
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 129/429 (30%), Positives = 181/429 (42%), Gaps = 70/429 (16%)
Query: 17 TPLHLKTHKLSLLDQLAPNNYTSLLLFYDGP--SRFDDKTSASTINDXXXXXXXXXXXXX 74
TP LK +K+S LDQL + +LFY P S D ++ +
Sbjct: 19 TPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHLKQSLSKVLTHFY--- 75
Query: 75 XXXPFAGKVLKDNYVVDCDDSGVPFVEARVPSSISMSEVLKNPEMNTLQQLLPFN--PNK 132
P AG++ N VDC+DSGVPFVEARV + +S + + E+ L Q LP P
Sbjct: 76 ---PLAGRI-NVNSSVDCNDSGVPFVEARVQAQLSQA-IQNVVELEKLDQYLPSAAYPGG 130
Query: 133 KYLSSTDDVNMAIQINHFACGGVAIGFNFRHIVADATASIGFIKNWAKLNSSDDNSII-N 191
K + +DV +A++I+ F CGG AIG N H +AD + F+ W + ++ N
Sbjct: 131 K-IEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETEIVLPN 189
Query: 192 YKHVVVDCTDTFPRNKEIPSYARRINEWQRAPECVTKRFVFDGCKVAALKRE-------- 243
+ FP PS +E V KRFVFD K+ AL+ +
Sbjct: 190 FDL----AARHFPPVDNTPSPELVPDE-----NVVMKRFVFDKEKIGALRAQASSASEEK 240
Query: 244 --------MILLIERNIDSTST--------IESIPVNLRNRMNQPLPEDCIGNLFHSVTC 287
+ + + ID T + VNLR+RMN PLP +GN+ +
Sbjct: 241 NFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFA 300
Query: 288 AANNEAGDGHCDKSTLARNVHESKKMVGGDFVRKVYQDGGVVFVNQYKEAVEELLKDGTN 347
A + E D R E K D ELLK T
Sbjct: 301 AVDAEWDKDFPDLIGPLRTSLE-----------KTEDDHN-----------HELLKGMTC 338
Query: 348 NDTTNSVRLFGFSGPMGLQFYEIDFGWGKPV-WVTSAMRMHNTAMLLDTRDGKGVEAWVG 406
L F+ L FY++DFGWGKP+ T+ N A+L+DTR G GVEAW+
Sbjct: 339 LYELEPQELLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTRSGDGVEAWLP 398
Query: 407 LPINDMPKL 415
+ ++M L
Sbjct: 399 MAEDEMAML 407
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 84/378 (22%), Positives = 146/378 (38%), Gaps = 65/378 (17%)
Query: 78 PFAGKVL--------KDNYVVDCDDSGVPFVEARVPSSISMSEVLKNPEMNT--LQQLLP 127
PF GK++ + V+ D V F E ++ ++E+ N N L+P
Sbjct: 78 PFVGKLVVYPAPTKKPEICYVEGDSVAVTFAEC----NLDLNELTGNHPRNCDKFYDLVP 133
Query: 128 FNPNKKYLSSTDDVNM-AIQINHFACGGVAIGFNFRHIVADATASIGFIKNW---AKLNS 183
LS + + ++Q+ F G+AIG H + DA+ F+K W A+ +
Sbjct: 134 ILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGN 193
Query: 184 SDDNSIINYKHVVVDCTDTFPRNKEIPSYARRINEWQRAPECVTKRFVFDGCKVAA---L 240
+D++ + N + D +P E +Y +R + VT+ K+ A L
Sbjct: 194 NDESFLANGTRPLYDRIIKYPMLDE--AYLKRAKVESFNEDYVTQSLAGPSDKLRATFIL 251
Query: 241 KREMI-LLIERNIDSTSTIESI---------------------------PVNLRNRMNQP 272
R +I L +R + T+E + P++ R RM P
Sbjct: 252 TRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRNDKLQLFGFPIDRRARMKPP 311
Query: 273 LPEDCIGNLFHSVTCAANNEAGDGHCDKSTLARNVHESKKMVGGDFVRKVYQDGGVVFVN 332
+P GN A G T A+ + E+ D+ V +D
Sbjct: 312 IPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKDD------ 365
Query: 333 QYKEAVEELLKDGTNNDTTNSVRLFGFSGPMGLQFYEIDFGWGKPVWVTSAMRMHNTAML 392
E+ +L+ +G T SG L+FY++DFGWGKP + + HN A+
Sbjct: 366 --MESFNDLVSEGMPTTMT------WVSGTPKLRFYDMDFGWGKPKKLETVSIDHNGAIS 417
Query: 393 LDTRDGKGVEAWVGLPIN 410
+++ + +G+ I+
Sbjct: 418 INSCKESNEDLEIGVCIS 435
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/391 (21%), Positives = 148/391 (37%), Gaps = 66/391 (16%)
Query: 29 LDQLAPNNYTSLLLFYDGPSRFDDKTSASTINDXXXXXXXXXXXXXXXXPFAGKVLKDN- 87
+D + PN +T + FY T +S D P AG++ +D
Sbjct: 29 VDLVVPNFHTPSVYFYR-------PTGSSNFFDAKVLKDALSRALVPFYPMAGRLKRDED 81
Query: 88 --YVVDCDDSGVPFVEARVPSSISMSEVLKNPEMNTLQQLLPFNPNKKYLSSTDDVNMAI 145
++C+ GV FVEA S + + L++L+P + +SS + +
Sbjct: 82 GRIEIECNGEGVLFVEAE--SDGVVDDFGDFAPTLELRRLIPAVDYSQGISSY--ALLVL 137
Query: 146 QINHFACGGVAIGFNFRHIVADATASIGFIKNWAKLNSSDDNSIINYKHVVVDCTDTFPR 205
Q+ +F CGGV++G RH AD + + FI +W+ + D ++ + +D T R
Sbjct: 138 QVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPF----IDRTLLRAR 193
Query: 206 NKEIPSYAR-------------RINEWQRAPECVTKRFVFDGCKVAALKR---------- 242
+ P + + + PE F +++ALK
Sbjct: 194 DPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFKLTREQISALKAKSKEDGNTIS 253
Query: 243 ----EMI-------LLIERNID-STSTIESIPVNLRNRMNQPLPEDCIGNLFHSVTCAAN 290
EM+ R ++ T I + R R+ LP GN+ + T A
Sbjct: 254 YSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAI 313
Query: 291 NEAGDGHCDKSTLARN-VHESKKMVGGDFVRKVYQDGGVVFVNQYKEAVEELLKDGTNND 349
AGD A + +H++ + D++R Y E ++ LK
Sbjct: 314 --AGDLEFKPVWYAASKIHDALARMDNDYLRSAL---------DYLE-LQPDLKALVRGA 361
Query: 350 TTNSVRLFGFSGPMGLQFYEIDFGWGKPVWV 380
T G + + L ++ DFGWG+P+++
Sbjct: 362 HTFKCPNLGITSWVRLPIHDADFGWGRPIFM 392
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/393 (21%), Positives = 149/393 (37%), Gaps = 70/393 (17%)
Query: 29 LDQLAPNNYTSLLLFYDGPSRFDDKTSASTINDXXXXXXXXXXXXXXXXPFAGKVLKDN- 87
+D + PN +T + FY T +S D P AG++ +D
Sbjct: 32 VDLVVPNFHTPSVYFYR-------PTGSSNFFDAKVLKDALSRALVPFYPMAGRLKRDED 84
Query: 88 --YVVDCDDSGVPFVEARVPSSISMSEVLKNPEMNTLQQLLPFNPNKKYLSSTDDVNMAI 145
++C+ GV FVEA S + + L++L+P + +SS + +
Sbjct: 85 GRIEIECNGEGVLFVEAE--SDGVVDDFGDFAPTLELRRLIPAVDYSQGISSY--ALLVL 140
Query: 146 QINHFACGGVAIGFNFRHIVADATASIGFIKNWAKLNSSDDNSIINYKHVVVDCTDTFPR 205
Q+ +F CGGV++G RH AD + + FI +W+ + D ++ + +D T R
Sbjct: 141 QVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPF----IDRTLLRAR 196
Query: 206 NKEIPSYARRINEWQ---------------RAPECVTKRFVFDGCKVAALKR-------- 242
+ P + E+Q PE F +++ALK
Sbjct: 197 DPPQPQFQH--IEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKEDGNT 254
Query: 243 ------EMI-------LLIERNID-STSTIESIPVNLRNRMNQPLPEDCIGNLFHSVTCA 288
EM+ R ++ T I + R R+ LP GN+ + T
Sbjct: 255 ISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPI 314
Query: 289 ANNEAGDGHCDKSTLARN-VHESKKMVGGDFVRKVYQDGGVVFVNQYKEAVEELLKDGTN 347
A AGD A + +H++ + D++R Y E ++ LK
Sbjct: 315 AI--AGDLEFKPVWYAASKIHDALARMDNDYLRSAL---------DYLE-LQPDLKALVR 362
Query: 348 NDTTNSVRLFGFSGPMGLQFYEIDFGWGKPVWV 380
T G + + L ++ DFGWG+P+++
Sbjct: 363 GAHTFKXPNLGITSWVRLPIHDADFGWGRPIFM 395
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 83/378 (21%), Positives = 144/378 (38%), Gaps = 65/378 (17%)
Query: 78 PFAGKVL--------KDNYVVDCDDSGVPFVEARVPSSISMSEVLKNPEMNT--LQQLLP 127
PF GK++ + V+ D V F E ++ ++E+ N N L+P
Sbjct: 78 PFVGKLVVYPAPTKKPEICYVEGDSVAVTFAEC----NLDLNELTGNHPRNCDKFYDLVP 133
Query: 128 FNPNKKYLSSTDDVNM-AIQINHFACGGVAIGFNFRHIVADATASIGFIKNW---AKLNS 183
LS + + ++Q+ F G+AIG H + DA+ F+K W A+ +
Sbjct: 134 ILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGN 193
Query: 184 SDDNSIINYKHVVVDCTDTFPRNKEIPSYARRINEWQRAPECVTKRFVFDGCKVAA---L 240
+D++ + N + D +P E +Y +R + VT+ K+ A L
Sbjct: 194 NDESFLANGTRPLYDRIIKYPXLDE--AYLKRAKVESFNEDYVTQSLAGPSDKLRATFIL 251
Query: 241 KREMI-LLIERNIDSTSTIESI---------------------------PVNLRNRMNQP 272
R +I L +R + T+E + P++ R R P
Sbjct: 252 TRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRNDKLQLFGFPIDRRARXKPP 311
Query: 273 LPEDCIGNLFHSVTCAANNEAGDGHCDKSTLARNVHESKKMVGGDFVRKVYQDGGVVFVN 332
+P GN A G T A+ + E+ D+ V +D
Sbjct: 312 IPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKDD------ 365
Query: 333 QYKEAVEELLKDGTNNDTTNSVRLFGFSGPMGLQFYEIDFGWGKPVWVTSAMRMHNTAML 392
E+ +L+ +G T SG L+FY+ DFGWGKP + + HN A+
Sbjct: 366 --XESFNDLVSEGXPTTXT------WVSGTPKLRFYDXDFGWGKPKKLETVSIDHNGAIS 417
Query: 393 LDTRDGKGVEAWVGLPIN 410
+++ + +G+ I+
Sbjct: 418 INSCKESNEDLEIGVCIS 435
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/393 (21%), Positives = 148/393 (37%), Gaps = 70/393 (17%)
Query: 29 LDQLAPNNYTSLLLFYDGPSRFDDKTSASTINDXXXXXXXXXXXXXXXXPFAGKVLKDN- 87
+D + PN +T + FY T +S D P AG++ +D
Sbjct: 32 VDLVVPNFHTPSVYFYR-------PTGSSNFFDAKVLKDALSRALVPFYPMAGRLKRDED 84
Query: 88 --YVVDCDDSGVPFVEARVPSSISMSEVLKNPEMNTLQQLLPFNPNKKYLSSTDDVNMAI 145
++C+ GV FVEA S + + L++L+P + +SS + +
Sbjct: 85 GRIEIECNGEGVLFVEAE--SDGVVDDFGDFAPTLELRRLIPAVDYSQGISSY--ALLVL 140
Query: 146 QINHFACGGVAIGFNFRHIVADATASIGFIKNWAKLNSSDDNSIINYKHVVVDCTDTFPR 205
Q+ +F GGV++G RH AD + + FI +W+ + D ++ + +D T R
Sbjct: 141 QVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPF----IDRTLLRAR 196
Query: 206 NKEIPSYARRINEWQ---------------RAPECVTKRFVFDGCKVAALKR-------- 242
+ P + E+Q PE F +++ALK
Sbjct: 197 DPPQPQFQH--IEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKEDGNT 254
Query: 243 ------EMI-------LLIERNID-STSTIESIPVNLRNRMNQPLPEDCIGNLFHSVTCA 288
EM+ R ++ T I + R R+ LP GN+ + T
Sbjct: 255 ISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPI 314
Query: 289 ANNEAGDGHCDKSTLARN-VHESKKMVGGDFVRKVYQDGGVVFVNQYKEAVEELLKDGTN 347
A AGD A + +H++ + D++R Y E ++ LK
Sbjct: 315 AI--AGDLEFKPVWYAASKIHDALARMDNDYLRSAL---------DYLE-LQPDLKALVR 362
Query: 348 NDTTNSVRLFGFSGPMGLQFYEIDFGWGKPVWV 380
T G + + L ++ DFGWG+P+++
Sbjct: 363 GAHTFKXPNLGITSWVRLPIHDADFGWGRPIFM 395
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 96/290 (33%), Gaps = 89/290 (30%)
Query: 143 MAIQINHFACGGVAIGFNFRHIVADATASIGFIKNWAKLNSSDDNSIINYKHVVVDCTDT 202
+AIQ+ F G++IGF H+ D + F++ WA LN + +
Sbjct: 145 LAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGD-------------EQ 191
Query: 203 FPRNKEIPSYARRI------------NEWQR------------APECVTKRFVFDGCKVA 238
F N+ IP Y R + NE ++ P+ V F+ +
Sbjct: 192 FLANEFIPFYDRSVIKDPNGVGXSIWNEXKKYKHXXKXSDVVTPPDKVRGTFIITRHDIG 251
Query: 239 ALKREMILLIERNIDSTS------------------TIESIPVN----------LRNRMN 270
LK ++ + TS T E I N R + N
Sbjct: 252 KLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGXEFFGCAADCRAQFN 311
Query: 271 QPLPEDCIGNLFHSVTCAANNEAGDGHCDKSTLARNVHESKKMVGGDFVRKVYQDGGVVF 330
PLP GN A + + T+A + G+ +RK +D
Sbjct: 312 PPLPPSYFGNALVGYV-ARTRQVDLAGKEGFTIAVELI-------GEAIRKRXKD----- 358
Query: 331 VNQYKEAVEELLKDGT---NNDTTNSVRLFGFSGPMGLQFYEIDFGWGKP 377
EE + G+ D ++ R +G L Y DFGWG+P
Sbjct: 359 --------EEWILSGSWFKEYDKVDAKRSLSVAGSPKLDLYAADFGWGRP 400
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 112 EVLKNPEMNTLQQLLPFNPNKKYLSSTDDVNMAIQINHFACGGVAIGFNFRHIVADATAS 171
+ LK+ + L+ LL FN ++ +S + ++ + F GG+++G R A T +
Sbjct: 832 QYLKDRPVTALRDLLDFNADQPAISLEEVESVESIVKRFCTGGMSLGALSRE--AHETLA 889
Query: 172 IGFIKNWAKLNSSDDNSIINYKHVVVDCTDTFPRNKEIP 210
I + AK NS + + +++ +D D+ + +P
Sbjct: 890 IAMNRLGAKSNSGEGGEDV-VRYLTLDDVDSEGNSPTLP 927
>pdb|3ASU|A Chain A, Crystal Structure Of Serine Dehydrogenase From Escherichia
Coli
pdb|3ASU|B Chain B, Crystal Structure Of Serine Dehydrogenase From Escherichia
Coli
pdb|3ASV|A Chain A, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|B Chain B, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|C Chain C, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|D Chain D, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|E Chain E, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|F Chain F, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
Length = 248
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 224 ECVTKRFVFDGCKVAALKREMILLIERNIDSTSTIESIPVNLRNR 268
EC+T+RF+ G KV A R L E + + +++RNR
Sbjct: 14 ECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNR 58
>pdb|2EGY|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Substrate Free Form), From Thermus
Thermophilus Hb27
pdb|2EGY|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Substrate Free Form), From Thermus
Thermophilus Hb27
pdb|2EGY|C Chain C, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Substrate Free Form), From Thermus
Thermophilus Hb27
pdb|2EGY|D Chain D, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Substrate Free Form), From Thermus
Thermophilus Hb27
pdb|2ZP7|C Chain C, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZP7|D Chain D, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZP7|F Chain F, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|3CBF|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase, From Thermus Thermophilus Hb27
pdb|3CBF|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase, From Thermus Thermophilus Hb27
pdb|2Z1Y|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Complexed With
N-(5'-Phosphopyridoxyl)-L-Leucine), From Thermus
Thermophilus Hb27
pdb|2Z1Y|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Complexed With
N-(5'-Phosphopyridoxyl)-L-Leucine), From Thermus
Thermophilus Hb27
pdb|2ZP7|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZP7|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZP7|E Chain E, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZYJ|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate), From Thermus
Thermophilus Hb27
pdb|2ZYJ|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate), From Thermus
Thermophilus Hb27
Length = 397
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 398 GKGVEAWVGLPINDMPKLEQDPGILTYASFTPSP 431
GKG I ++ KL Q PGIL++A P+P
Sbjct: 11 GKGAGRIQASTIRELLKLTQRPGILSFAGGLPAP 44
>pdb|3ZUR|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
pdb|3ZUR|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
Length = 960
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 179 AKLNSSDDNSIINYKHVVVDCTDTFPRNKEIPSYARRINEWQRAPECVTKRFVFD--GCK 236
+KLN S + ++IN + C+ ++ N IP +R+ ++ + + ++++D G
Sbjct: 853 SKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLEDFDASLKDALLKYIYDNRGTL 912
Query: 237 VAALKR 242
+ + R
Sbjct: 913 IGQVDR 918
>pdb|3ZUS|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|C Chain C, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|D Chain D, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
Length = 927
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 179 AKLNSSDDNSIINYKHVVVDCTDTFPRNKEIPSYARRINEWQRAPECVTKRFVFD--GCK 236
+KLN S + ++IN + C+ ++ N IP +R+ ++ + + ++++D G
Sbjct: 820 SKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLEDFDASLKDALLKYIYDNRGTL 879
Query: 237 VAALKR 242
+ + R
Sbjct: 880 IGQVDR 885
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|B Chain B, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|C Chain C, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|D Chain D, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|E Chain E, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|F Chain F, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|G Chain G, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|H Chain H, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
Length = 221
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 141 VNMAIQINHFACGGVAIGFNFRHIVADATASIGFIKNWAKLN 182
V+ + I H ACGG+ +F D T S FI+ W K+
Sbjct: 104 VSNIVVIGHSACGGIKGLLSFPF---DGTYSTDFIEEWVKIG 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,563,391
Number of Sequences: 62578
Number of extensions: 502864
Number of successful extensions: 1062
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1028
Number of HSP's gapped (non-prelim): 31
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)