BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037814
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 4 AIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVL---HDAEKRQVKEE 60
A IS L+ +L + EE K L GV K ++ L L + A L + + Q+ +
Sbjct: 1 AAISNLIPKLGELLTEEFK----LHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQ 56
Query: 61 TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGV--DDHLN 100
+LW D++R+ Y +EDV+ + +Q+DG+ DD+ N
Sbjct: 57 D-KLWADEVRELSYVIEDVVD-----KFLVQVDGIKSDDNNN 92
>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
Particle
Length = 433
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA-QFAY 225
S++FG +KE N +L P II LVG+ G GKTT A + AY
Sbjct: 80 SKLFGGDKEPNVNPTKL----------PFIIMLVGVQGSGKTTTAGKLAY 119
>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
Length = 440
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA-QFAY 225
S++FG +KE N +L P II LVG+ G GKTT A + AY
Sbjct: 87 SKLFGGDKEPNVNPTKL----------PFIIMLVGVQGSGKTTTAGKLAY 126
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 178 EIFGREKEKNELVNRLLCESSEERKGP-RIISLVGMGGIGKTTLAQ 222
E G+E+ K +L R+ E+++ RK P + L G G+GKTTLA
Sbjct: 13 EYIGQERLKQKL--RVYLEAAKARKEPLEHLLLFGPPGLGKTTLAH 56
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 178 EIFGREKEKNELVNRLLCESSEERKGP-RIISLVGMGGIGKTTLAQ 222
E G+E+ K +L R+ E+++ RK P + L G G+GKTTLA
Sbjct: 13 EYIGQERLKQKL--RVYLEAAKARKEPLEHLLLFGPPGLGKTTLAH 56
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 178 EIFGREKEKNELVNRLLCESSEERKGP-RIISLVGMGGIGKTTLAQ 222
E G+E+ K +L R+ E+++ RK P + L G G+GKTTLA
Sbjct: 13 EYIGQERLKQKL--RVYLEAAKARKEPLEHLLLFGPPGLGKTTLAH 56
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA-QFAY 225
S +FG +KE + +++ P +I LVG+ G GKTT A + AY
Sbjct: 81 SNLFGGDKEPKVIPDKI----------PYVIMLVGVQGTGKTTTAGKLAY 120
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 192 RLLCESSEERKGPRIISLVGMGGIGKTTLAQ 222
RL E E +KG +I +VG GIGKTT +
Sbjct: 301 RLEVEPGEIKKG-EVIGIVGPNGIGKTTFVK 330
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 192 RLLCESSEERKGPRIISLVGMGGIGKTTLAQ 222
+L E E RKG +I +VG GIGKTT +
Sbjct: 371 KLEVEPGEIRKG-EVIGIVGPNGIGKTTFVK 400
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 192 RLLCESSEERKGPRIISLVGMGGIGKTTLAQF 223
+L E E RKG +I +VG GIGKTT +
Sbjct: 357 KLEVEPGEIRKG-EVIGIVGPNGIGKTTFVKM 387
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 175 DESEIFGREKEK-NELVNRLLCESSEERKGPRIISLVGMGGIGKTT 219
D ++G KE+ E++ ++ + E K P +I +VG+ G+GKTT
Sbjct: 69 DAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTT 114
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 175 DESEIFGREKEK-NELVNRLLCESSEERKGPRIISLVGMGGIGKTT 219
D ++G KE+ E++ ++ + E K P +I +VG+ G+GKTT
Sbjct: 68 DAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTT 113
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 175 DESEIFGREKEK-NELVNRLLCESSEERKGPRIISLVGMGGIGKTT 219
D ++G KE+ E++ ++ + E K P +I +VG+ G+GKTT
Sbjct: 63 DAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTT 108
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 200 ERKGPRIISLVGMGGIGKTT 219
E K P +I +VG+ G+GKTT
Sbjct: 289 EGKAPFVILMVGVNGVGKTT 308
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 192 RLLCESSEERKGPRIISLVGMGGIGKTTLAQ 222
+L+ ++ E ++G II ++G GIGKTT A+
Sbjct: 283 QLVVDNGEAKEG-EIIGILGPNGIGKTTFAR 312
>pdb|2YFA|A Chain A, X-Ray Structure Of Mcps Ligand Binding Domain In Complex
With Malate
pdb|2YFA|B Chain B, X-Ray Structure Of Mcps Ligand Binding Domain In Complex
With Malate
pdb|2YFB|A Chain A, X-Ray Structure Of Mcps Ligand Binding Domain In Complex
With Succinate
pdb|2YFB|B Chain B, X-Ray Structure Of Mcps Ligand Binding Domain In Complex
With Succinate
Length = 258
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 40 SSLRAVQAVLHDAE--KRQVKEETVRLW-----LDQLRDACYDMEDVLGEWNTARLKLQI 92
++LR + A L D + KRQ+ E RL + RDA D + T+R ++ +
Sbjct: 175 AALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTV 234
Query: 93 DGVD 96
G D
Sbjct: 235 QGAD 238
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 11/50 (22%)
Query: 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGK-TTLAQFAY 225
S +FG +KE + +++ P +I LVG+ G GK TT + AY
Sbjct: 81 SNLFGGDKEPKVIPDKI----------PYVIMLVGVQGTGKATTAGKLAY 120
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 178 EIFGREKEKNELVNRLLCES-SEERKGPRIISLVGMGGIGKTTLAQ 222
E G EK K ++ L + ++ KGP I+ L G G+GKT+LA+
Sbjct: 82 EHHGLEKVKERILEYLAVQKLTKSLKGP-ILCLAGPPGVGKTSLAK 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,977,852
Number of Sequences: 62578
Number of extensions: 220144
Number of successful extensions: 985
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 970
Number of HSP's gapped (non-prelim): 36
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)