Query 037814
Match_columns 229
No_of_seqs 137 out of 1348
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:37:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.8 4.5E-20 9.8E-25 167.4 14.5 199 4-228 3-203 (889)
2 PLN03210 Resistant to P. syrin 99.0 4.4E-10 9.5E-15 106.8 5.5 48 176-227 183-230 (1153)
3 PTZ00202 tuzin; Provisional 98.3 1.2E-05 2.5E-10 67.9 11.5 50 175-227 260-309 (550)
4 TIGR02928 orc1/cdc6 family rep 98.0 5.8E-06 1.3E-10 69.4 4.5 52 173-226 11-62 (365)
5 smart00763 AAA_PrkA PrkA AAA d 97.9 9.9E-06 2.2E-10 67.0 4.3 51 176-226 50-100 (361)
6 PRK00411 cdc6 cell division co 97.9 1.5E-05 3.2E-10 67.7 4.6 51 175-227 28-78 (394)
7 PF05659 RPW8: Arabidopsis bro 97.8 0.0012 2.5E-08 48.0 12.2 83 2-84 3-86 (147)
8 PRK00080 ruvB Holliday junctio 97.7 3.4E-05 7.4E-10 63.9 3.3 50 177-227 25-74 (328)
9 PF05496 RuvB_N: Holliday junc 97.6 7E-05 1.5E-09 57.9 4.2 50 177-227 24-73 (233)
10 PRK11331 5-methylcytosine-spec 97.6 0.0002 4.3E-09 61.1 6.4 42 177-226 175-216 (459)
11 TIGR03015 pepcterm_ATPase puta 97.5 0.00013 2.9E-09 58.5 4.6 24 204-227 43-66 (269)
12 PRK15455 PrkA family serine pr 97.5 0.00014 3.1E-09 63.5 4.4 49 178-226 77-125 (644)
13 PRK13342 recombination factor 97.4 0.00011 2.3E-09 62.9 3.4 44 178-227 13-59 (413)
14 PRK04195 replication factor C 97.4 0.00017 3.7E-09 62.9 3.8 49 177-227 14-62 (482)
15 COG0466 Lon ATP-dependent Lon 97.4 0.00018 3.9E-09 63.8 3.7 48 178-225 324-371 (782)
16 PHA02544 44 clamp loader, smal 97.3 0.00029 6.4E-09 58.0 4.5 46 177-227 21-66 (316)
17 PF12061 DUF3542: Protein of u 97.3 0.0013 2.8E-08 53.0 7.7 77 4-84 296-373 (402)
18 CHL00095 clpC Clp protease ATP 97.3 0.00025 5.5E-09 65.7 4.3 43 178-226 180-222 (821)
19 cd02019 NK Nucleoside/nucleoti 97.3 0.00022 4.8E-09 44.8 2.6 21 206-226 1-21 (69)
20 PRK12402 replication factor C 97.3 0.00033 7.2E-09 58.1 4.3 44 177-226 15-58 (337)
21 TIGR03345 VI_ClpV1 type VI sec 97.2 0.00036 7.8E-09 64.8 4.5 43 178-226 188-230 (852)
22 KOG2004 Mitochondrial ATP-depe 97.2 0.0035 7.7E-08 55.9 10.2 49 177-225 411-459 (906)
23 TIGR00763 lon ATP-dependent pr 97.2 0.0021 4.6E-08 59.3 9.3 49 178-226 321-369 (775)
24 TIGR01242 26Sp45 26S proteasom 97.2 0.00032 7E-09 59.0 3.7 52 176-227 121-179 (364)
25 TIGR02903 spore_lon_C ATP-depe 97.2 0.00046 1E-08 61.9 4.7 43 178-226 155-197 (615)
26 COG2255 RuvB Holliday junction 97.2 0.00035 7.5E-09 55.6 3.1 49 177-226 26-74 (332)
27 TIGR00554 panK_bact pantothena 97.2 0.00078 1.7E-08 54.6 5.2 23 202-224 60-82 (290)
28 PRK10865 protein disaggregatio 97.2 0.00049 1.1E-08 64.0 4.5 42 178-225 179-220 (857)
29 PRK00440 rfc replication facto 97.1 0.00055 1.2E-08 56.3 4.3 44 177-226 17-60 (319)
30 PRK09376 rho transcription ter 97.1 0.00024 5.3E-09 59.5 2.1 23 205-227 170-192 (416)
31 TIGR02639 ClpA ATP-dependent C 97.1 0.00053 1.2E-08 62.8 4.5 43 178-226 183-225 (731)
32 TIGR03420 DnaA_homol_Hda DnaA 97.1 0.00076 1.7E-08 52.6 4.7 39 182-226 22-60 (226)
33 PF03193 DUF258: Protein of un 97.1 0.0011 2.4E-08 48.8 5.0 35 184-227 24-58 (161)
34 PRK13341 recombination factor 97.1 0.00066 1.4E-08 61.8 4.3 44 178-227 29-75 (725)
35 PRK03992 proteasome-activating 97.0 0.00044 9.5E-09 58.7 2.5 51 177-227 131-188 (389)
36 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0013 2.8E-08 47.0 4.5 23 204-226 22-44 (133)
37 PRK08903 DnaA regulatory inact 97.0 0.0015 3.3E-08 51.0 5.3 24 204-227 42-65 (227)
38 PRK10787 DNA-binding ATP-depen 96.9 0.00087 1.9E-08 61.7 3.9 49 178-226 323-371 (784)
39 TIGR03346 chaperone_ClpB ATP-d 96.9 0.001 2.2E-08 62.1 4.3 43 178-226 174-216 (852)
40 PRK14961 DNA polymerase III su 96.9 0.0016 3.5E-08 54.7 4.9 45 177-226 16-60 (363)
41 PRK09087 hypothetical protein; 96.9 0.0024 5.2E-08 50.0 5.5 24 204-227 44-67 (226)
42 COG2256 MGS1 ATPase related to 96.9 0.0012 2.6E-08 55.0 3.8 44 174-226 27-70 (436)
43 KOG2028 ATPase related to the 96.8 0.0014 3E-08 54.2 4.0 26 202-227 160-185 (554)
44 CHL00181 cbbX CbbX; Provisiona 96.8 0.0022 4.8E-08 52.1 5.1 49 178-226 24-81 (287)
45 PLN02318 phosphoribulokinase/u 96.8 0.0017 3.8E-08 57.2 4.6 25 202-226 63-87 (656)
46 PTZ00112 origin recognition co 96.8 0.0017 3.6E-08 59.7 4.5 51 175-226 753-803 (1164)
47 PRK05439 pantothenate kinase; 96.8 0.0026 5.6E-08 52.1 5.1 24 202-225 84-107 (311)
48 PRK14962 DNA polymerase III su 96.7 0.0021 4.5E-08 55.8 4.6 45 177-226 14-58 (472)
49 cd00820 PEPCK_HprK Phosphoenol 96.7 0.0015 3.3E-08 44.7 3.0 22 204-225 15-36 (107)
50 PRK11034 clpA ATP-dependent Cl 96.7 0.0018 3.9E-08 59.3 4.4 43 178-226 187-229 (758)
51 PRK10416 signal recognition pa 96.7 0.0032 7E-08 51.9 5.3 24 202-225 112-135 (318)
52 PRK06620 hypothetical protein; 96.7 0.0051 1.1E-07 47.8 6.1 52 175-228 15-68 (214)
53 cd01878 HflX HflX subfamily. 96.7 0.0016 3.4E-08 50.0 3.3 26 202-227 39-64 (204)
54 TIGR03499 FlhF flagellar biosy 96.7 0.0032 6.9E-08 51.1 5.2 23 203-225 193-215 (282)
55 PRK08084 DNA replication initi 96.7 0.0038 8.3E-08 49.2 5.5 23 204-226 45-67 (235)
56 cd01858 NGP_1 NGP-1. Autoanti 96.7 0.0039 8.3E-08 45.8 5.0 25 204-228 102-126 (157)
57 PRK14957 DNA polymerase III su 96.7 0.0025 5.4E-08 56.2 4.6 44 178-226 17-60 (546)
58 PRK11889 flhF flagellar biosyn 96.7 0.0029 6.3E-08 53.3 4.7 23 203-225 240-262 (436)
59 PRK13531 regulatory ATPase Rav 96.6 0.0023 5.1E-08 55.2 4.2 41 178-226 21-61 (498)
60 PLN02796 D-glycerate 3-kinase 96.6 0.0019 4.2E-08 53.4 3.5 25 202-226 98-122 (347)
61 TIGR01425 SRP54_euk signal rec 96.6 0.0042 9.1E-08 53.0 5.4 23 202-224 98-120 (429)
62 PRK10463 hydrogenase nickel in 96.6 0.0037 8E-08 50.5 4.8 25 202-226 102-126 (290)
63 PRK14963 DNA polymerase III su 96.6 0.0033 7.1E-08 55.1 4.7 44 178-226 15-58 (504)
64 PRK10584 putative ABC transpor 96.6 0.002 4.3E-08 50.4 3.1 22 205-226 37-58 (228)
65 PLN02200 adenylate kinase fami 96.6 0.0025 5.5E-08 50.2 3.6 25 202-226 41-65 (234)
66 PF08298 AAA_PrkA: PrkA AAA do 96.6 0.0041 8.8E-08 51.4 4.9 52 175-226 59-110 (358)
67 PRK14960 DNA polymerase III su 96.5 0.0038 8.3E-08 55.8 4.9 43 177-224 15-57 (702)
68 PRK14955 DNA polymerase III su 96.5 0.0036 7.8E-08 53.3 4.6 44 177-225 16-59 (397)
69 PRK08727 hypothetical protein; 96.5 0.0059 1.3E-07 48.1 5.5 22 205-226 42-63 (233)
70 PRK06893 DNA replication initi 96.5 0.0068 1.5E-07 47.6 5.7 23 205-227 40-62 (229)
71 TIGR02397 dnaX_nterm DNA polym 96.5 0.0046 9.9E-08 51.7 4.9 44 177-225 14-57 (355)
72 PRK05703 flhF flagellar biosyn 96.5 0.0044 9.5E-08 53.1 4.8 21 204-224 221-241 (424)
73 PRK11629 lolD lipoprotein tran 96.5 0.0025 5.4E-08 50.1 3.1 22 205-226 36-57 (233)
74 PRK14956 DNA polymerase III su 96.5 0.004 8.6E-08 53.8 4.4 45 177-226 18-62 (484)
75 PRK08099 bifunctional DNA-bind 96.5 0.0023 4.9E-08 54.4 3.0 25 202-226 217-241 (399)
76 TIGR00064 ftsY signal recognit 96.5 0.0033 7.1E-08 50.7 3.7 23 202-224 70-92 (272)
77 PLN02348 phosphoribulokinase 96.4 0.0032 6.9E-08 52.9 3.7 25 202-226 47-71 (395)
78 PF06309 Torsin: Torsin; Inte 96.4 0.0081 1.8E-07 42.3 5.2 44 178-224 26-73 (127)
79 PRK10536 hypothetical protein; 96.4 0.0054 1.2E-07 48.7 4.7 40 178-225 56-95 (262)
80 TIGR02881 spore_V_K stage V sp 96.4 0.003 6.4E-08 50.6 3.3 25 202-226 40-64 (261)
81 CHL00081 chlI Mg-protoporyphyr 96.4 0.0038 8.3E-08 52.0 4.0 48 173-226 13-60 (350)
82 PRK09435 membrane ATPase/prote 96.4 0.0053 1.1E-07 50.8 4.8 23 202-224 54-76 (332)
83 PRK14949 DNA polymerase III su 96.4 0.0051 1.1E-07 56.8 4.8 45 177-226 16-60 (944)
84 PRK05896 DNA polymerase III su 96.4 0.0049 1.1E-07 54.7 4.5 43 177-224 16-58 (605)
85 COG4608 AppF ABC-type oligopep 96.4 0.0029 6.3E-08 50.2 2.8 22 204-225 39-60 (268)
86 PRK11247 ssuB aliphatic sulfon 96.3 0.0032 6.9E-08 50.4 3.1 22 205-226 39-60 (257)
87 PTZ00361 26 proteosome regulat 96.3 0.0048 1E-07 53.0 4.3 51 177-227 183-240 (438)
88 COG1474 CDC6 Cdc6-related prot 96.3 0.0064 1.4E-07 51.1 4.9 47 178-226 18-64 (366)
89 PTZ00454 26S protease regulato 96.3 0.0051 1.1E-07 52.3 4.3 51 177-227 145-202 (398)
90 cd03267 ABC_NatA_like Similar 96.3 0.0034 7.4E-08 49.5 3.1 22 205-226 48-69 (236)
91 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.3 0.0036 7.8E-08 45.4 3.0 22 205-226 27-48 (144)
92 PRK12323 DNA polymerase III su 96.3 0.0059 1.3E-07 54.6 4.7 44 177-225 16-59 (700)
93 PRK08691 DNA polymerase III su 96.3 0.0059 1.3E-07 55.0 4.7 44 177-225 16-59 (709)
94 PRK14958 DNA polymerase III su 96.3 0.0057 1.2E-07 53.7 4.5 44 177-225 16-59 (509)
95 PRK14274 phosphate ABC transpo 96.2 0.0039 8.4E-08 49.9 3.1 21 205-225 39-59 (259)
96 PRK14970 DNA polymerase III su 96.2 0.0072 1.6E-07 50.9 4.8 45 177-226 17-61 (367)
97 TIGR00602 rad24 checkpoint pro 96.2 0.0067 1.4E-07 54.4 4.8 50 177-227 84-133 (637)
98 PLN03046 D-glycerate 3-kinase; 96.2 0.0051 1.1E-07 52.2 3.8 24 202-225 210-233 (460)
99 PRK10575 iron-hydroxamate tran 96.2 0.0037 8E-08 50.2 2.9 22 205-226 38-59 (265)
100 TIGR02880 cbbX_cfxQ probable R 96.2 0.0045 9.7E-08 50.3 3.4 47 178-224 23-78 (284)
101 PRK10744 pstB phosphate transp 96.2 0.004 8.7E-08 49.8 3.1 21 205-225 40-60 (260)
102 PRK05642 DNA replication initi 96.2 0.013 2.9E-07 46.1 6.0 23 204-226 45-67 (234)
103 cd03294 ABC_Pro_Gly_Bertaine T 96.2 0.0041 8.8E-08 50.1 3.1 22 205-226 51-72 (269)
104 PRK14974 cell division protein 96.2 0.0049 1.1E-07 51.1 3.6 23 203-225 139-161 (336)
105 PRK05537 bifunctional sulfate 96.2 0.009 2E-07 53.1 5.4 25 202-226 390-414 (568)
106 PRK14238 phosphate transporter 96.2 0.004 8.7E-08 50.2 3.0 22 205-226 51-72 (271)
107 PRK14951 DNA polymerase III su 96.2 0.007 1.5E-07 54.2 4.6 43 177-224 16-58 (618)
108 PRK14235 phosphate transporter 96.2 0.0044 9.4E-08 49.8 3.1 22 205-226 46-67 (267)
109 PRK13645 cbiO cobalt transport 96.2 0.0042 9.2E-08 50.5 3.1 22 205-226 38-59 (289)
110 PRK14243 phosphate transporter 96.2 0.0044 9.5E-08 49.7 3.1 21 205-225 37-57 (264)
111 TIGR03815 CpaE_hom_Actino heli 96.2 0.0096 2.1E-07 49.2 5.2 23 202-224 91-114 (322)
112 PRK14969 DNA polymerase III su 96.2 0.0072 1.6E-07 53.3 4.6 43 177-224 16-58 (527)
113 PLN02165 adenylate isopentenyl 96.2 0.0048 1E-07 50.8 3.3 23 204-226 43-65 (334)
114 PRK07003 DNA polymerase III su 96.2 0.0077 1.7E-07 54.7 4.7 44 177-225 16-59 (830)
115 PRK14259 phosphate ABC transpo 96.2 0.0046 9.9E-08 49.8 3.1 22 205-226 40-61 (269)
116 PRK10867 signal recognition pa 96.1 0.01 2.3E-07 50.8 5.3 23 202-224 98-120 (433)
117 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.1 0.0047 1E-07 48.3 3.0 22 205-226 49-70 (224)
118 PRK14248 phosphate ABC transpo 96.1 0.0045 9.9E-08 49.7 3.0 22 205-226 48-69 (268)
119 TIGR03689 pup_AAA proteasome A 96.1 0.0066 1.4E-07 53.1 4.1 51 177-227 182-239 (512)
120 TIGR00767 rho transcription te 96.1 0.004 8.7E-08 52.5 2.7 23 205-227 169-191 (415)
121 PRK13543 cytochrome c biogenes 96.1 0.005 1.1E-07 47.7 3.0 22 205-226 38-59 (214)
122 PRK14265 phosphate ABC transpo 96.1 0.0049 1.1E-07 49.7 3.1 21 205-225 47-67 (274)
123 PRK14237 phosphate transporter 96.1 0.0051 1.1E-07 49.4 3.1 22 205-226 47-68 (267)
124 PRK13632 cbiO cobalt transport 96.1 0.005 1.1E-07 49.6 3.1 22 205-226 36-57 (271)
125 PRK13546 teichoic acids export 96.1 0.005 1.1E-07 49.4 3.0 22 205-226 51-72 (264)
126 COG1223 Predicted ATPase (AAA+ 96.1 0.0083 1.8E-07 47.5 4.0 53 177-229 121-176 (368)
127 PRK14489 putative bifunctional 96.1 0.0088 1.9E-07 50.4 4.5 41 183-226 187-227 (366)
128 COG1123 ATPase components of v 96.0 0.005 1.1E-07 53.7 3.0 21 205-225 318-338 (539)
129 PRK14722 flhF flagellar biosyn 96.0 0.0051 1.1E-07 51.7 2.9 22 204-225 137-158 (374)
130 PRK05201 hslU ATP-dependent pr 96.0 0.01 2.2E-07 50.5 4.6 49 177-225 15-71 (443)
131 PRK00771 signal recognition pa 96.0 0.012 2.7E-07 50.5 5.3 24 202-225 93-116 (437)
132 PRK14964 DNA polymerase III su 96.0 0.009 1.9E-07 52.0 4.4 44 177-225 13-56 (491)
133 cd03248 ABCC_TAP TAP, the Tran 96.0 0.006 1.3E-07 47.7 3.1 23 204-226 40-62 (226)
134 PRK12724 flagellar biosynthesi 96.0 0.0058 1.3E-07 51.9 3.1 22 204-225 223-244 (432)
135 PRK14275 phosphate ABC transpo 96.0 0.0059 1.3E-07 49.6 3.1 22 205-226 66-87 (286)
136 PRK12727 flagellar biosynthesi 96.0 0.01 2.2E-07 52.0 4.5 23 203-225 349-371 (559)
137 PRK13648 cbiO cobalt transport 96.0 0.006 1.3E-07 49.1 3.1 22 205-226 36-57 (269)
138 TIGR02902 spore_lonB ATP-depen 96.0 0.0097 2.1E-07 52.6 4.6 43 178-226 66-108 (531)
139 TIGR01243 CDC48 AAA family ATP 96.0 0.0084 1.8E-07 55.2 4.3 51 177-227 178-235 (733)
140 PRK14271 phosphate ABC transpo 96.0 0.0063 1.4E-07 49.2 3.1 22 205-226 48-69 (276)
141 PRK07994 DNA polymerase III su 96.0 0.01 2.2E-07 53.4 4.6 45 177-226 16-60 (647)
142 PRK14268 phosphate ABC transpo 96.0 0.0062 1.4E-07 48.6 3.0 22 205-226 39-60 (258)
143 PRK11308 dppF dipeptide transp 96.0 0.0063 1.4E-07 50.4 3.1 22 205-226 42-63 (327)
144 PRK09111 DNA polymerase III su 96.0 0.0099 2.2E-07 53.1 4.5 44 177-225 24-67 (598)
145 PRK00098 GTPase RsgA; Reviewed 96.0 0.011 2.3E-07 48.4 4.4 34 185-227 154-187 (298)
146 PRK14954 DNA polymerase III su 95.9 0.012 2.5E-07 52.9 4.9 43 177-224 16-58 (620)
147 PRK15112 antimicrobial peptide 95.9 0.0066 1.4E-07 48.8 3.1 22 205-226 40-61 (267)
148 PRK09473 oppD oligopeptide tra 95.9 0.0062 1.3E-07 50.6 2.9 22 205-226 43-64 (330)
149 COG0542 clpA ATP-binding subun 95.9 0.0089 1.9E-07 54.4 4.1 39 178-222 171-209 (786)
150 TIGR02769 nickel_nikE nickel i 95.9 0.0067 1.5E-07 48.7 3.1 22 205-226 38-59 (265)
151 PRK06995 flhF flagellar biosyn 95.9 0.0064 1.4E-07 52.7 3.0 21 205-225 257-277 (484)
152 PRK06645 DNA polymerase III su 95.9 0.012 2.5E-07 51.7 4.6 44 178-226 22-65 (507)
153 PRK14952 DNA polymerase III su 95.9 0.012 2.5E-07 52.5 4.7 44 177-225 13-56 (584)
154 PRK13631 cbiO cobalt transport 95.9 0.0069 1.5E-07 50.0 3.1 22 205-226 53-74 (320)
155 cd03291 ABCC_CFTR1 The CFTR su 95.9 0.0071 1.5E-07 49.1 3.1 22 205-226 64-85 (282)
156 PRK14236 phosphate transporter 95.9 0.0069 1.5E-07 48.8 3.0 21 205-225 52-72 (272)
157 PRK14950 DNA polymerase III su 95.9 0.012 2.6E-07 52.8 4.6 44 177-225 16-59 (585)
158 PRK09183 transposase/IS protei 95.9 0.0068 1.5E-07 48.5 2.8 22 205-226 103-124 (259)
159 PF13555 AAA_29: P-loop contai 95.8 0.011 2.4E-07 36.1 3.1 19 206-224 25-43 (62)
160 PRK14252 phosphate ABC transpo 95.8 0.0077 1.7E-07 48.3 3.1 22 205-226 43-64 (265)
161 TIGR00362 DnaA chromosomal rep 95.8 0.017 3.7E-07 49.4 5.3 23 204-226 136-158 (405)
162 TIGR00390 hslU ATP-dependent p 95.8 0.014 2.9E-07 49.7 4.5 49 178-226 13-69 (441)
163 PRK15079 oligopeptide ABC tran 95.8 0.0078 1.7E-07 50.0 3.1 22 205-226 48-69 (331)
164 COG1134 TagH ABC-type polysacc 95.8 0.0083 1.8E-07 46.9 3.0 21 205-225 54-74 (249)
165 cd01855 YqeH YqeH. YqeH is an 95.8 0.013 2.9E-07 44.4 4.1 39 181-227 112-150 (190)
166 TIGR00991 3a0901s02IAP34 GTP-b 95.8 0.018 3.9E-07 47.0 5.0 26 202-227 36-61 (313)
167 PRK14721 flhF flagellar biosyn 95.8 0.0085 1.8E-07 51.1 3.3 22 203-224 190-211 (420)
168 PRK10419 nikE nickel transport 95.8 0.008 1.7E-07 48.3 3.0 22 205-226 39-60 (268)
169 PRK14254 phosphate ABC transpo 95.8 0.0082 1.8E-07 48.7 3.0 22 204-225 65-86 (285)
170 PF13245 AAA_19: Part of AAA d 95.8 0.0099 2.2E-07 38.1 2.8 20 205-224 11-31 (76)
171 PRK14264 phosphate ABC transpo 95.8 0.0087 1.9E-07 49.1 3.1 23 204-226 71-93 (305)
172 PRK13705 plasmid-partitioning 95.8 0.019 4.2E-07 48.7 5.2 23 202-224 104-127 (388)
173 COG1245 Predicted ATPase, RNas 95.7 0.0081 1.8E-07 51.2 2.8 24 202-225 365-388 (591)
174 PRK13633 cobalt transporter AT 95.7 0.0093 2E-07 48.3 3.0 22 205-226 37-58 (280)
175 PF03215 Rad17: Rad17 cell cyc 95.7 0.013 2.8E-07 51.5 4.0 49 178-227 20-68 (519)
176 TIGR00959 ffh signal recogniti 95.7 0.021 4.5E-07 49.0 5.3 23 202-224 97-119 (428)
177 PRK08154 anaerobic benzoate ca 95.7 0.016 3.5E-07 47.6 4.4 25 202-226 131-155 (309)
178 TIGR01241 FtsH_fam ATP-depende 95.7 0.015 3.2E-07 51.1 4.4 51 177-227 55-111 (495)
179 PRK13549 xylose transporter AT 95.7 0.0086 1.9E-07 52.7 2.9 22 205-226 289-310 (506)
180 COG2274 SunT ABC-type bacterio 95.7 0.0087 1.9E-07 54.5 3.0 22 204-225 499-520 (709)
181 PRK10865 protein disaggregatio 95.7 0.019 4.2E-07 53.6 5.3 49 178-226 569-620 (857)
182 PRK12422 chromosomal replicati 95.7 0.024 5.3E-07 49.0 5.5 49 178-226 113-163 (445)
183 PRK06526 transposase; Provisio 95.7 0.0086 1.9E-07 47.8 2.6 22 205-226 99-120 (254)
184 COG1119 ModF ABC-type molybden 95.6 0.01 2.3E-07 46.4 3.0 23 205-227 58-80 (257)
185 cd03213 ABCG_EPDR ABCG transpo 95.6 0.01 2.2E-07 45.3 2.9 22 205-226 36-57 (194)
186 PRK12726 flagellar biosynthesi 95.6 0.012 2.5E-07 49.5 3.4 24 202-225 204-227 (407)
187 COG0714 MoxR-like ATPases [Gen 95.6 0.017 3.7E-07 47.9 4.5 40 178-225 25-64 (329)
188 TIGR02639 ClpA ATP-dependent C 95.6 0.019 4.2E-07 52.8 5.2 49 178-226 455-506 (731)
189 PRK15134 microcin C ABC transp 95.6 0.0093 2E-07 52.8 3.1 22 205-226 36-57 (529)
190 PRK06305 DNA polymerase III su 95.6 0.018 3.9E-07 49.9 4.7 43 177-224 17-59 (451)
191 cd01857 HSR1_MMR1 HSR1/MMR1. 95.6 0.012 2.7E-07 42.4 3.1 23 206-228 85-107 (141)
192 PRK15439 autoinducer 2 ABC tra 95.6 0.0098 2.1E-07 52.4 3.1 22 205-226 38-59 (510)
193 PRK13536 nodulation factor exp 95.6 0.011 2.3E-07 49.4 3.1 22 205-226 68-89 (340)
194 PRK00149 dnaA chromosomal repl 95.6 0.028 6E-07 48.8 5.8 46 178-227 124-171 (450)
195 TIGR02788 VirB11 P-type DNA tr 95.6 0.019 4.1E-07 47.2 4.5 23 204-226 144-166 (308)
196 COG1419 FlhF Flagellar GTP-bin 95.6 0.012 2.7E-07 49.4 3.4 39 183-223 184-223 (407)
197 PRK10261 glutathione transport 95.6 0.0098 2.1E-07 53.7 3.0 22 205-226 43-64 (623)
198 PRK10070 glycine betaine trans 95.6 0.01 2.2E-07 50.6 2.9 22 205-226 55-76 (400)
199 TIGR01526 nadR_NMN_Atrans nico 95.6 0.011 2.3E-07 49.0 3.0 22 205-226 163-184 (325)
200 PRK14953 DNA polymerase III su 95.6 0.021 4.5E-07 50.0 4.8 43 178-225 17-59 (486)
201 PRK07764 DNA polymerase III su 95.6 0.018 3.9E-07 53.4 4.6 43 178-225 16-58 (824)
202 PRK10982 galactose/methyl gala 95.6 0.0096 2.1E-07 52.2 2.8 23 204-226 274-296 (491)
203 PRK09700 D-allose transporter 95.6 0.01 2.2E-07 52.3 3.0 23 204-226 289-311 (510)
204 cd03288 ABCC_SUR2 The SUR doma 95.5 0.012 2.6E-07 47.0 3.1 22 205-226 48-69 (257)
205 TIGR02868 CydC thiol reductant 95.5 0.01 2.2E-07 52.5 2.9 23 203-225 360-382 (529)
206 KOG1969 DNA replication checkp 95.5 0.013 2.8E-07 52.6 3.5 49 178-226 272-348 (877)
207 PRK12288 GTPase RsgA; Reviewed 95.5 0.016 3.4E-07 48.4 3.8 34 185-227 195-228 (347)
208 cd01129 PulE-GspE PulE/GspE Th 95.5 0.022 4.8E-07 45.7 4.5 40 180-225 62-101 (264)
209 TIGR00157 ribosome small subun 95.5 0.018 4E-07 45.7 4.0 34 185-227 110-143 (245)
210 TIGR00764 lon_rel lon-related 95.5 0.016 3.4E-07 52.1 4.0 42 177-226 18-59 (608)
211 PRK12289 GTPase RsgA; Reviewed 95.5 0.017 3.7E-07 48.3 3.9 33 186-227 163-195 (352)
212 PRK15064 ABC transporter ATP-b 95.5 0.011 2.5E-07 52.2 3.0 22 205-226 346-367 (530)
213 PRK09112 DNA polymerase III su 95.5 0.024 5.3E-07 47.4 4.8 43 177-224 23-65 (351)
214 PRK15439 autoinducer 2 ABC tra 95.5 0.011 2.4E-07 52.1 2.9 23 204-226 289-311 (510)
215 PRK14246 phosphate ABC transpo 95.5 0.012 2.7E-07 47.0 3.0 21 205-225 37-57 (257)
216 PRK07952 DNA replication prote 95.5 0.023 4.9E-07 45.1 4.4 38 185-226 84-121 (244)
217 CHL00176 ftsH cell division pr 95.5 0.012 2.5E-07 53.1 3.0 51 177-227 183-239 (638)
218 PRK15134 microcin C ABC transp 95.5 0.012 2.5E-07 52.2 3.0 23 204-226 312-334 (529)
219 PRK13409 putative ATPase RIL; 95.5 0.012 2.5E-07 52.8 3.1 22 205-226 366-387 (590)
220 COG4167 SapF ABC-type antimicr 95.5 0.012 2.6E-07 44.3 2.6 20 205-224 40-59 (267)
221 PLN00020 ribulose bisphosphate 95.5 0.013 2.8E-07 49.0 3.1 26 202-227 146-171 (413)
222 COG1703 ArgK Putative periplas 95.5 0.022 4.7E-07 46.0 4.2 34 187-224 38-71 (323)
223 PF05673 DUF815: Protein of un 95.5 0.021 4.6E-07 44.9 4.1 47 174-226 24-74 (249)
224 PRK11819 putative ABC transpor 95.4 0.012 2.6E-07 52.5 3.0 22 205-226 351-372 (556)
225 KOG0991 Replication factor C, 95.4 0.02 4.3E-07 44.7 3.8 41 177-223 27-67 (333)
226 cd01854 YjeQ_engC YjeQ/EngC. 95.4 0.02 4.4E-07 46.5 4.1 32 186-226 152-183 (287)
227 PRK13477 bifunctional pantoate 95.4 0.011 2.5E-07 51.6 2.8 23 204-226 284-306 (512)
228 TIGR01817 nifA Nif-specific re 95.4 0.025 5.4E-07 50.1 5.0 50 174-227 193-242 (534)
229 PRK10261 glutathione transport 95.4 0.012 2.7E-07 53.1 3.1 23 204-226 350-372 (623)
230 PRK13409 putative ATPase RIL; 95.4 0.012 2.6E-07 52.7 3.0 23 204-226 99-121 (590)
231 PRK14257 phosphate ABC transpo 95.4 0.013 2.9E-07 48.5 3.1 22 205-226 109-130 (329)
232 PRK12723 flagellar biosynthesi 95.4 0.015 3.4E-07 49.1 3.5 22 204-225 174-195 (388)
233 PRK10762 D-ribose transporter 95.4 0.012 2.7E-07 51.6 3.0 22 205-226 279-300 (501)
234 PRK11147 ABC transporter ATPas 95.4 0.012 2.7E-07 53.2 3.0 23 205-227 346-368 (635)
235 KOG0924 mRNA splicing factor A 95.4 0.018 3.8E-07 51.4 3.7 36 184-227 359-395 (1042)
236 PRK11288 araG L-arabinose tran 95.4 0.012 2.6E-07 51.7 2.9 22 205-226 280-301 (501)
237 PRK13869 plasmid-partitioning 95.4 0.032 6.9E-07 47.7 5.3 42 183-224 89-142 (405)
238 TIGR02524 dot_icm_DotB Dot/Icm 95.4 0.022 4.7E-07 47.8 4.2 22 204-225 134-155 (358)
239 TIGR03719 ABC_ABC_ChvD ATP-bin 95.4 0.013 2.7E-07 52.2 2.9 22 205-226 349-370 (552)
240 PF14532 Sigma54_activ_2: Sigm 95.4 0.011 2.4E-07 42.4 2.1 44 180-227 1-44 (138)
241 PRK04220 2-phosphoglycerate ki 95.4 0.017 3.6E-07 47.0 3.3 23 204-226 92-114 (301)
242 TIGR03269 met_CoM_red_A2 methy 95.4 0.014 2.9E-07 51.6 3.1 22 205-226 311-332 (520)
243 PRK11034 clpA ATP-dependent Cl 95.3 0.03 6.5E-07 51.5 5.3 48 178-225 459-509 (758)
244 PRK12377 putative replication 95.3 0.02 4.3E-07 45.5 3.6 24 204-227 101-124 (248)
245 PRK10636 putative ABC transpor 95.3 0.014 3E-07 52.9 3.0 22 205-226 339-360 (638)
246 COG0488 Uup ATPase components 95.3 0.013 2.8E-07 51.6 2.7 22 205-226 349-370 (530)
247 PRK15494 era GTPase Era; Provi 95.3 0.02 4.3E-07 47.8 3.7 25 203-227 51-75 (339)
248 PRK03003 GTP-binding protein D 95.3 0.025 5.5E-07 49.3 4.5 26 202-227 36-61 (472)
249 TIGR03453 partition_RepA plasm 95.3 0.036 7.9E-07 47.1 5.4 23 202-224 102-125 (387)
250 cd04178 Nucleostemin_like Nucl 95.3 0.038 8.3E-07 41.3 4.9 25 203-227 116-140 (172)
251 TIGR02782 TrbB_P P-type conjug 95.3 0.026 5.7E-07 46.1 4.3 22 205-226 133-154 (299)
252 PRK01889 GTPase RsgA; Reviewed 95.3 0.027 5.8E-07 47.3 4.5 35 184-226 183-217 (356)
253 PLN03073 ABC transporter F fam 95.3 0.014 3E-07 53.5 2.9 22 205-226 204-225 (718)
254 TIGR02633 xylG D-xylose ABC tr 95.3 0.014 3.1E-07 51.2 2.9 23 204-226 286-308 (500)
255 PRK05342 clpX ATP-dependent pr 95.3 0.03 6.6E-07 47.8 4.8 49 178-226 72-130 (412)
256 PRK09452 potA putrescine/sperm 95.3 0.016 3.5E-07 49.0 3.1 22 205-226 41-62 (375)
257 PHA02519 plasmid partition pro 95.3 0.038 8.3E-07 46.9 5.3 40 185-224 86-127 (387)
258 TIGR03345 VI_ClpV1 type VI sec 95.2 0.034 7.4E-07 51.9 5.4 48 177-224 566-616 (852)
259 PRK10938 putative molybdenum t 95.2 0.015 3.2E-07 51.0 3.0 23 204-226 286-308 (490)
260 PRK10646 ADP-binding protein; 95.2 0.038 8.3E-07 40.4 4.5 23 204-226 28-50 (153)
261 PRK14965 DNA polymerase III su 95.2 0.031 6.6E-07 50.0 4.8 44 177-225 16-59 (576)
262 cd01859 MJ1464 MJ1464. This f 95.2 0.049 1.1E-06 39.8 5.2 42 181-227 83-124 (156)
263 COG1875 NYN ribonuclease and A 95.2 0.025 5.4E-07 46.9 3.8 36 181-222 228-263 (436)
264 TIGR00382 clpX endopeptidase C 95.1 0.039 8.5E-07 47.1 5.0 49 177-225 77-137 (413)
265 COG4618 ArpD ABC-type protease 95.1 0.017 3.7E-07 49.8 2.8 20 205-224 363-382 (580)
266 PRK03003 GTP-binding protein D 95.1 0.042 9.1E-07 48.0 5.3 48 180-227 185-234 (472)
267 PRK07471 DNA polymerase III su 95.1 0.037 8E-07 46.6 4.8 42 177-223 19-60 (365)
268 PRK11607 potG putrescine trans 95.1 0.019 4.1E-07 48.5 3.1 21 205-225 46-66 (377)
269 KOG0744 AAA+-type ATPase [Post 95.1 0.018 4E-07 46.9 2.8 24 204-227 177-200 (423)
270 PRK08116 hypothetical protein; 95.1 0.018 3.9E-07 46.4 2.7 22 206-227 116-137 (268)
271 PHA02244 ATPase-like protein 95.1 0.031 6.7E-07 46.8 4.1 36 183-226 106-141 (383)
272 PLN03073 ABC transporter F fam 95.0 0.018 4E-07 52.7 3.0 22 205-226 536-557 (718)
273 PRK09518 bifunctional cytidyla 95.0 0.039 8.5E-07 50.7 5.1 49 180-228 422-474 (712)
274 cd01882 BMS1 Bms1. Bms1 is an 95.0 0.027 5.8E-07 44.1 3.5 26 202-227 37-62 (225)
275 PRK05563 DNA polymerase III su 95.0 0.039 8.5E-07 49.1 4.9 43 177-224 16-58 (559)
276 TIGR03415 ABC_choXWV_ATP choli 95.0 0.022 4.7E-07 48.2 3.0 22 205-226 51-72 (382)
277 PRK13851 type IV secretion sys 95.0 0.038 8.3E-07 46.1 4.4 23 204-226 162-184 (344)
278 PRK07133 DNA polymerase III su 94.9 0.039 8.5E-07 50.2 4.7 43 177-224 18-60 (725)
279 KOG0781 Signal recognition par 94.9 0.032 7E-07 47.8 3.9 25 201-225 375-400 (587)
280 COG1072 CoaA Panthothenate kin 94.9 0.049 1.1E-06 43.5 4.7 24 202-225 80-103 (283)
281 PRK06647 DNA polymerase III su 94.9 0.043 9.3E-07 48.9 4.9 45 177-226 16-60 (563)
282 PRK11176 lipid transporter ATP 94.9 0.021 4.5E-07 51.2 2.9 22 204-225 369-390 (582)
283 PRK12337 2-phosphoglycerate ki 94.9 0.029 6.2E-07 48.3 3.6 25 202-226 253-277 (475)
284 PRK13545 tagH teichoic acids e 94.9 0.023 4.9E-07 49.9 3.0 22 205-226 51-72 (549)
285 PRK14088 dnaA chromosomal repl 94.9 0.059 1.3E-06 46.6 5.5 24 204-227 130-153 (440)
286 TIGR03797 NHPM_micro_ABC2 NHPM 94.9 0.021 4.6E-07 52.2 2.9 22 204-225 479-500 (686)
287 PRK05291 trmE tRNA modificatio 94.9 0.22 4.7E-06 43.3 9.0 22 206-227 217-238 (449)
288 PRK06851 hypothetical protein; 94.8 0.43 9.2E-06 40.2 10.3 23 204-226 214-236 (367)
289 PRK14087 dnaA chromosomal repl 94.8 0.043 9.3E-07 47.6 4.5 23 204-226 141-163 (450)
290 COG1132 MdlB ABC-type multidru 94.8 0.024 5.2E-07 50.6 3.1 22 204-225 355-376 (567)
291 TIGR01650 PD_CobS cobaltochela 94.8 0.077 1.7E-06 43.8 5.7 34 185-226 53-86 (327)
292 KOG0927 Predicted transporter 94.8 0.073 1.6E-06 46.4 5.7 44 180-228 397-440 (614)
293 TIGR03346 chaperone_ClpB ATP-d 94.8 0.051 1.1E-06 50.9 5.2 48 178-225 566-616 (852)
294 PRK06921 hypothetical protein; 94.7 0.025 5.5E-07 45.4 2.8 24 204-227 117-140 (266)
295 PLN02199 shikimate kinase 94.7 0.026 5.6E-07 45.8 2.8 22 205-226 103-124 (303)
296 TIGR01243 CDC48 AAA family ATP 94.7 0.043 9.3E-07 50.6 4.6 51 177-227 453-510 (733)
297 PF00437 T2SE: Type II/IV secr 94.7 0.036 7.8E-07 44.5 3.7 38 185-226 112-149 (270)
298 TIGR03594 GTPase_EngA ribosome 94.7 0.064 1.4E-06 46.1 5.4 48 181-228 147-196 (429)
299 PRK14948 DNA polymerase III su 94.7 0.045 9.7E-07 49.3 4.5 44 177-225 16-59 (620)
300 TIGR02858 spore_III_AA stage I 94.7 0.053 1.2E-06 43.6 4.5 37 185-226 97-133 (270)
301 PRK14723 flhF flagellar biosyn 94.7 0.027 5.8E-07 51.5 3.1 22 204-225 185-206 (767)
302 PRK10522 multidrug transporter 94.7 0.026 5.6E-07 50.2 2.9 23 204-226 349-371 (547)
303 PRK13900 type IV secretion sys 94.7 0.044 9.6E-07 45.5 4.1 23 204-226 160-182 (332)
304 TIGR03878 thermo_KaiC_2 KaiC d 94.6 0.03 6.5E-07 44.8 3.0 36 185-224 21-56 (259)
305 PF01695 IstB_IS21: IstB-like 94.6 0.029 6.4E-07 42.2 2.7 22 205-226 48-69 (178)
306 KOG0062 ATPase component of AB 94.6 0.022 4.8E-07 49.2 2.2 22 205-226 107-128 (582)
307 TIGR01663 PNK-3'Pase polynucle 94.6 0.038 8.2E-07 48.6 3.7 25 202-226 367-391 (526)
308 PRK08451 DNA polymerase III su 94.6 0.055 1.2E-06 47.7 4.7 43 177-224 14-56 (535)
309 COG5192 BMS1 GTP-binding prote 94.6 0.037 8E-07 48.4 3.5 23 202-224 67-89 (1077)
310 TIGR02012 tigrfam_recA protein 94.6 0.059 1.3E-06 44.4 4.5 24 202-225 53-76 (321)
311 PRK00652 lpxK tetraacyldisacch 94.5 0.031 6.6E-07 46.2 2.9 25 202-226 47-73 (325)
312 cd01133 F1-ATPase_beta F1 ATP 94.5 0.023 5.1E-07 45.6 2.1 23 205-227 70-92 (274)
313 KOG1547 Septin CDC10 and relat 94.5 0.12 2.7E-06 40.4 5.9 44 178-226 25-68 (336)
314 TIGR01193 bacteriocin_ABC ABC- 94.5 0.029 6.2E-07 51.5 3.0 22 204-225 500-521 (708)
315 TIGR00958 3a01208 Conjugate Tr 94.5 0.029 6.2E-07 51.5 2.9 24 203-226 506-529 (711)
316 CHL00095 clpC Clp protease ATP 94.5 0.057 1.2E-06 50.4 4.9 48 177-224 509-559 (821)
317 COG4987 CydC ABC-type transpor 94.5 0.03 6.6E-07 48.6 2.8 22 205-226 365-386 (573)
318 cd00983 recA RecA is a bacter 94.5 0.061 1.3E-06 44.4 4.5 24 202-225 53-76 (325)
319 PRK11174 cysteine/glutathione 94.5 0.029 6.4E-07 50.3 2.8 23 204-226 376-398 (588)
320 PRK09866 hypothetical protein; 94.5 0.053 1.2E-06 48.5 4.3 41 183-227 52-92 (741)
321 TIGR03796 NHPM_micro_ABC1 NHPM 94.5 0.031 6.7E-07 51.3 3.0 22 204-225 505-526 (710)
322 PRK06835 DNA replication prote 94.4 0.031 6.8E-07 46.3 2.7 22 205-226 184-205 (329)
323 TIGR03018 pepcterm_TyrKin exop 94.4 0.05 1.1E-06 41.9 3.7 22 202-223 33-55 (207)
324 PRK14959 DNA polymerase III su 94.4 0.057 1.2E-06 48.4 4.4 44 177-225 16-59 (624)
325 PRK11160 cysteine/glutathione 94.4 0.032 6.8E-07 50.0 2.9 23 204-226 366-388 (574)
326 PTZ00035 Rad51 protein; Provis 94.4 0.061 1.3E-06 44.8 4.4 24 202-225 116-139 (337)
327 PRK08181 transposase; Validate 94.4 0.032 6.9E-07 44.9 2.5 21 206-226 108-128 (269)
328 TIGR01842 type_I_sec_PrtD type 94.4 0.034 7.3E-07 49.4 3.0 23 204-226 344-366 (544)
329 PRK13657 cyclic beta-1,2-gluca 94.4 0.034 7.3E-07 49.9 3.0 22 204-225 361-382 (588)
330 KOG0066 eIF2-interacting prote 94.4 0.032 6.9E-07 47.5 2.6 23 204-226 613-635 (807)
331 TIGR02857 CydD thiol reductant 94.4 0.033 7.1E-07 49.3 2.8 24 203-226 347-370 (529)
332 TIGR03375 type_I_sec_LssB type 94.3 0.034 7.4E-07 50.9 3.0 22 204-225 491-512 (694)
333 PTZ00494 tuzin-like protein; P 94.3 0.76 1.7E-05 39.7 10.6 49 175-226 369-417 (664)
334 PHA02624 large T antigen; Prov 94.3 0.081 1.7E-06 47.1 5.0 39 184-226 415-453 (647)
335 PRK10789 putative multidrug tr 94.3 0.034 7.4E-07 49.7 2.9 23 204-226 341-363 (569)
336 COG1162 Predicted GTPases [Gen 94.3 0.056 1.2E-06 43.8 3.8 33 184-225 153-185 (301)
337 TIGR02236 recomb_radA DNA repa 94.3 0.079 1.7E-06 43.5 4.8 24 202-225 93-116 (310)
338 COG1123 ATPase components of v 94.3 0.04 8.7E-07 48.3 3.1 22 205-226 36-57 (539)
339 TIGR01192 chvA glucan exporter 94.2 0.036 7.8E-07 49.8 2.8 22 204-225 361-382 (585)
340 COG1222 RPT1 ATP-dependent 26S 94.2 0.11 2.5E-06 43.0 5.4 52 177-228 151-209 (406)
341 PRK13894 conjugal transfer ATP 94.2 0.071 1.5E-06 44.0 4.3 22 205-226 149-170 (319)
342 PRK14086 dnaA chromosomal repl 94.2 0.1 2.3E-06 46.6 5.6 24 204-227 314-337 (617)
343 PRK05973 replicative DNA helic 94.2 0.065 1.4E-06 42.2 3.8 22 203-224 63-84 (237)
344 TIGR01420 pilT_fam pilus retra 94.1 0.066 1.4E-06 44.7 4.1 22 205-226 123-144 (343)
345 PRK15429 formate hydrogenlyase 94.1 0.066 1.4E-06 49.0 4.3 47 177-227 376-422 (686)
346 cd01849 YlqF_related_GTPase Yl 94.1 0.068 1.5E-06 39.1 3.6 25 203-227 99-123 (155)
347 TIGR01194 cyc_pep_trnsptr cycl 94.0 0.043 9.2E-07 48.9 2.9 23 204-226 368-390 (555)
348 COG4240 Predicted kinase [Gene 94.0 0.056 1.2E-06 42.0 3.1 25 202-226 48-72 (300)
349 PRK14971 DNA polymerase III su 93.9 0.086 1.9E-06 47.5 4.6 43 177-224 17-59 (614)
350 TIGR00954 3a01203 Peroxysomal 93.9 0.048 1E-06 49.7 3.1 23 204-226 478-500 (659)
351 KOG0727 26S proteasome regulat 93.9 0.19 4.1E-06 39.9 5.9 52 177-228 155-213 (408)
352 COG4175 ProV ABC-type proline/ 93.9 0.053 1.2E-06 44.2 2.9 22 205-226 55-76 (386)
353 TIGR02203 MsbA_lipidA lipid A 93.9 0.048 1E-06 48.7 3.0 22 204-225 358-379 (571)
354 PRK10790 putative multidrug tr 93.9 0.048 1.1E-06 48.9 3.0 22 204-225 367-388 (592)
355 PRK00093 GTP-binding protein D 93.9 0.11 2.5E-06 44.7 5.2 26 202-227 171-196 (435)
356 PRK09354 recA recombinase A; P 93.9 0.099 2.2E-06 43.6 4.5 24 202-225 58-81 (349)
357 PLN02772 guanylate kinase 93.9 0.06 1.3E-06 45.4 3.3 26 202-227 133-158 (398)
358 TIGR02204 MsbA_rel ABC transpo 93.8 0.052 1.1E-06 48.6 3.1 23 204-226 366-388 (576)
359 PRK04301 radA DNA repair and r 93.8 0.099 2.1E-06 43.1 4.5 24 202-225 100-123 (317)
360 PRK13765 ATP-dependent proteas 93.8 0.078 1.7E-06 47.8 4.1 42 177-226 31-72 (637)
361 PRK08939 primosomal protein Dn 93.8 0.092 2E-06 43.1 4.3 45 181-227 135-179 (306)
362 TIGR02239 recomb_RAD51 DNA rep 93.8 0.085 1.8E-06 43.5 4.0 24 202-225 94-117 (316)
363 PLN03211 ABC transporter G-25; 93.8 0.055 1.2E-06 49.2 3.2 23 204-226 94-116 (659)
364 cd01856 YlqF YlqF. Proteins o 93.8 0.17 3.7E-06 37.6 5.4 24 204-227 115-138 (171)
365 PRK05022 anaerobic nitric oxid 93.8 0.093 2E-06 46.3 4.5 48 176-227 186-233 (509)
366 KOG0730 AAA+-type ATPase [Post 93.7 0.27 5.8E-06 44.0 7.0 51 177-227 434-491 (693)
367 TIGR02238 recomb_DMC1 meiotic 93.7 0.081 1.8E-06 43.6 3.7 24 202-225 94-117 (313)
368 COG1484 DnaC DNA replication p 93.7 0.05 1.1E-06 43.4 2.4 23 204-226 105-127 (254)
369 PRK12608 transcription termina 93.7 0.054 1.2E-06 45.5 2.7 36 186-226 120-155 (380)
370 TIGR03819 heli_sec_ATPase heli 93.7 0.11 2.4E-06 43.3 4.6 37 183-226 164-200 (340)
371 COG0593 DnaA ATPase involved i 93.6 0.37 8E-06 41.0 7.6 49 177-227 88-136 (408)
372 COG4181 Predicted ABC-type tra 93.6 0.049 1.1E-06 40.6 2.1 20 205-224 37-56 (228)
373 COG0802 Predicted ATPase or ki 93.6 0.15 3.1E-06 37.0 4.5 38 184-225 9-46 (149)
374 PRK06731 flhF flagellar biosyn 93.6 0.069 1.5E-06 43.0 3.1 21 204-224 75-95 (270)
375 smart00350 MCM minichromosome 93.6 0.12 2.5E-06 45.7 4.8 49 178-226 204-258 (509)
376 KOG0058 Peptide exporter, ABC 93.6 0.059 1.3E-06 48.5 2.9 22 204-225 494-515 (716)
377 TIGR02525 plasmid_TraJ plasmid 93.6 0.095 2.1E-06 44.2 4.0 21 205-225 150-170 (372)
378 COG1245 Predicted ATPase, RNas 93.5 0.062 1.3E-06 46.0 2.8 21 204-224 100-120 (591)
379 COG1084 Predicted GTPase [Gene 93.5 0.4 8.7E-06 39.3 7.3 24 202-225 166-189 (346)
380 PRK13764 ATPase; Provisional 93.5 0.098 2.1E-06 46.8 4.1 22 205-226 258-279 (602)
381 COG0464 SpoVK ATPases of the A 93.4 0.093 2E-06 46.1 3.9 49 178-226 243-298 (494)
382 COG2401 ABC-type ATPase fused 93.4 0.052 1.1E-06 46.0 2.2 48 178-225 372-430 (593)
383 TIGR00450 mnmE_trmE_thdF tRNA 93.4 0.073 1.6E-06 46.0 3.2 23 205-227 204-226 (442)
384 KOG0731 AAA+-type ATPase conta 93.4 0.1 2.3E-06 47.5 4.2 49 178-226 312-366 (774)
385 KOG0733 Nuclear AAA ATPase (VC 93.4 0.14 3.1E-06 45.4 4.8 51 177-227 190-246 (802)
386 TIGR00368 Mg chelatase-related 93.3 0.096 2.1E-06 46.0 3.7 43 176-226 191-233 (499)
387 TIGR00416 sms DNA repair prote 93.3 0.13 2.8E-06 44.7 4.4 24 202-225 92-115 (454)
388 TIGR01846 type_I_sec_HlyB type 93.3 0.072 1.6E-06 48.8 3.1 23 204-226 483-505 (694)
389 PRK11860 bifunctional 3-phosph 93.3 0.11 2.3E-06 47.4 4.1 24 203-226 441-464 (661)
390 TIGR03596 GTPase_YlqF ribosome 93.2 0.085 1.9E-06 42.6 3.1 24 204-227 118-141 (276)
391 PRK13833 conjugal transfer pro 93.2 0.14 2.9E-06 42.4 4.3 21 206-226 146-166 (323)
392 KOG4181 Uncharacterized conser 93.2 0.14 3.1E-06 42.2 4.3 38 183-225 172-209 (491)
393 COG4778 PhnL ABC-type phosphon 93.1 0.088 1.9E-06 39.2 2.7 22 206-227 39-60 (235)
394 KOG0738 AAA+-type ATPase [Post 93.1 0.075 1.6E-06 44.6 2.6 26 202-227 243-268 (491)
395 COG4172 ABC-type uncharacteriz 93.1 0.059 1.3E-06 45.5 2.0 21 205-225 314-334 (534)
396 cd01121 Sms Sms (bacterial rad 93.1 0.15 3.2E-06 43.1 4.4 24 202-225 80-103 (372)
397 PRK09563 rbgA GTPase YlqF; Rev 93.1 0.18 3.8E-06 41.1 4.8 24 204-227 121-144 (287)
398 TIGR02533 type_II_gspE general 93.1 0.15 3.3E-06 44.6 4.7 41 180-226 224-264 (486)
399 PLN03187 meiotic recombination 93.1 0.14 3E-06 42.8 4.2 24 202-225 124-147 (344)
400 PRK11388 DNA-binding transcrip 93.0 0.12 2.7E-06 46.8 4.2 46 177-226 325-370 (638)
401 PRK08149 ATP synthase SpaL; Va 93.0 0.099 2.1E-06 44.8 3.3 23 205-227 152-174 (428)
402 PRK05506 bifunctional sulfate 93.0 0.09 2E-06 47.7 3.2 25 202-226 458-482 (632)
403 COG4988 CydD ABC-type transpor 93.0 0.094 2E-06 46.0 3.2 24 202-225 345-368 (559)
404 TIGR03156 GTP_HflX GTP-binding 93.0 0.11 2.4E-06 43.5 3.5 25 203-227 188-212 (351)
405 PRK10923 glnG nitrogen regulat 93.0 0.14 3.1E-06 44.5 4.3 46 178-227 139-184 (469)
406 PRK15424 propionate catabolism 92.9 0.13 2.8E-06 45.6 4.0 47 177-227 219-265 (538)
407 COG0552 FtsY Signal recognitio 92.9 0.1 2.3E-06 42.8 3.2 22 202-223 137-158 (340)
408 PRK06002 fliI flagellum-specif 92.9 0.11 2.3E-06 44.8 3.4 24 204-227 165-188 (450)
409 PRK08972 fliI flagellum-specif 92.9 0.1 2.2E-06 44.8 3.2 23 205-227 163-185 (444)
410 TIGR02329 propionate_PrpR prop 92.9 0.14 2.9E-06 45.4 4.0 47 177-227 212-258 (526)
411 PTZ00322 6-phosphofructo-2-kin 92.8 0.082 1.8E-06 48.2 2.7 23 203-225 214-236 (664)
412 TIGR02729 Obg_CgtA Obg family 92.8 0.091 2E-06 43.6 2.8 23 204-226 157-179 (329)
413 CHL00195 ycf46 Ycf46; Provisio 92.8 0.17 3.6E-06 44.3 4.5 49 178-226 229-281 (489)
414 PRK07196 fliI flagellum-specif 92.8 0.096 2.1E-06 45.0 2.9 24 204-227 155-178 (434)
415 TIGR02768 TraA_Ti Ti-type conj 92.8 0.15 3.3E-06 47.1 4.4 21 205-225 369-389 (744)
416 PRK12298 obgE GTPase CgtA; Rev 92.8 0.094 2E-06 44.6 2.9 23 204-226 159-181 (390)
417 COG3854 SpoIIIAA ncharacterize 92.7 0.16 3.4E-06 39.8 3.6 38 178-224 120-157 (308)
418 COG1341 Predicted GTPase or GT 92.7 0.19 4.2E-06 42.3 4.4 27 201-227 70-96 (398)
419 KOG0651 26S proteasome regulat 92.7 0.12 2.7E-06 42.1 3.2 25 202-226 164-188 (388)
420 PRK12299 obgE GTPase CgtA; Rev 92.6 0.097 2.1E-06 43.5 2.7 23 204-226 158-180 (335)
421 PRK10820 DNA-binding transcrip 92.6 0.15 3.2E-06 45.2 4.0 46 177-226 204-249 (520)
422 KOG0057 Mitochondrial Fe/S clu 92.6 0.1 2.2E-06 45.6 2.8 22 204-225 378-399 (591)
423 COG2074 2-phosphoglycerate kin 92.6 0.22 4.7E-06 39.4 4.4 25 202-226 87-111 (299)
424 PTZ00265 multidrug resistance 92.6 0.095 2.1E-06 52.0 2.9 22 204-225 411-432 (1466)
425 COG0468 RecA RecA/RadA recombi 92.5 0.19 4E-06 40.6 4.1 24 202-225 58-81 (279)
426 KOG0728 26S proteasome regulat 92.5 0.28 6.1E-06 38.9 4.9 50 179-228 148-205 (404)
427 TIGR03029 EpsG chain length de 92.5 0.26 5.7E-06 39.6 5.0 41 182-224 83-124 (274)
428 KOG0734 AAA+-type ATPase conta 92.4 0.19 4.1E-06 44.0 4.2 50 177-226 304-359 (752)
429 PRK08927 fliI flagellum-specif 92.4 0.13 2.8E-06 44.2 3.2 24 204-227 158-181 (442)
430 KOG0726 26S proteasome regulat 92.3 0.36 7.7E-06 39.2 5.3 51 177-227 185-242 (440)
431 PRK11058 GTPase HflX; Provisio 92.3 0.14 3.1E-06 44.0 3.3 25 203-227 196-220 (426)
432 TIGR00955 3a01204 The Eye Pigm 92.3 0.13 2.7E-06 46.6 3.1 23 204-226 51-73 (617)
433 KOG2227 Pre-initiation complex 92.2 0.24 5.3E-06 42.5 4.6 52 174-227 147-198 (529)
434 cd01136 ATPase_flagellum-secre 92.2 0.16 3.4E-06 42.1 3.4 23 205-227 70-92 (326)
435 PRK11823 DNA repair protein Ra 92.2 0.23 5E-06 43.1 4.6 25 202-226 78-102 (446)
436 PLN03186 DNA repair protein RA 92.1 0.22 4.7E-06 41.6 4.1 24 202-225 121-144 (342)
437 COG1224 TIP49 DNA helicase TIP 92.1 0.25 5.5E-06 41.1 4.3 45 177-225 39-86 (450)
438 KOG1970 Checkpoint RAD17-RFC c 92.1 0.24 5.2E-06 43.4 4.4 43 184-226 89-132 (634)
439 PF06068 TIP49: TIP49 C-termin 92.0 0.31 6.8E-06 40.8 4.9 45 177-225 24-71 (398)
440 PF05621 TniB: Bacterial TniB 92.0 0.26 5.7E-06 40.1 4.3 47 177-226 34-83 (302)
441 TIGR03597 GTPase_YqeH ribosome 92.0 0.21 4.5E-06 42.1 4.0 23 205-227 155-177 (360)
442 PRK05922 type III secretion sy 92.0 0.15 3.3E-06 43.8 3.1 23 205-227 158-180 (434)
443 COG1855 ATPase (PilT family) [ 91.9 0.18 3.9E-06 43.2 3.4 31 187-224 253-283 (604)
444 PTZ00265 multidrug resistance 91.9 0.12 2.7E-06 51.2 2.9 22 204-225 1194-1215(1466)
445 COG0542 clpA ATP-binding subun 91.8 0.34 7.3E-06 44.5 5.3 47 178-224 492-541 (786)
446 TIGR02655 circ_KaiC circadian 91.8 0.26 5.7E-06 43.2 4.5 24 202-225 261-284 (484)
447 KOG2355 Predicted ABC-type tra 91.8 0.11 2.4E-06 39.9 1.9 19 206-224 42-60 (291)
448 COG0465 HflB ATP-dependent Zn 91.8 0.19 4.2E-06 44.7 3.6 54 174-227 147-206 (596)
449 TIGR02915 PEP_resp_reg putativ 91.7 0.27 5.8E-06 42.5 4.5 45 178-226 140-184 (445)
450 PRK08472 fliI flagellum-specif 91.7 0.17 3.7E-06 43.5 3.1 23 205-227 158-180 (434)
451 PLN03232 ABC transporter C fam 91.6 0.15 3.3E-06 50.8 3.1 23 204-226 1262-1284(1495)
452 PRK14712 conjugal transfer nic 91.6 0.26 5.6E-06 48.9 4.5 36 183-225 838-873 (1623)
453 KOG0733 Nuclear AAA ATPase (VC 91.6 0.15 3.3E-06 45.3 2.7 25 204-228 545-569 (802)
454 COG4586 ABC-type uncharacteriz 91.6 0.18 3.9E-06 40.4 2.9 23 202-224 48-70 (325)
455 PRK06936 type III secretion sy 91.6 0.2 4.3E-06 43.1 3.4 25 204-228 162-186 (439)
456 PRK09862 putative ATP-dependen 91.5 0.21 4.6E-06 43.8 3.6 42 177-226 191-232 (506)
457 KOG0410 Predicted GTP binding 91.4 0.19 4.1E-06 41.2 2.9 24 202-225 176-199 (410)
458 PRK05688 fliI flagellum-specif 91.4 0.21 4.5E-06 43.1 3.4 22 205-226 169-190 (451)
459 TIGR00956 3a01205 Pleiotropic 91.4 0.17 3.6E-06 50.1 3.2 24 204-227 87-110 (1394)
460 KOG0066 eIF2-interacting prote 91.4 0.11 2.4E-06 44.4 1.6 21 207-227 293-313 (807)
461 CHL00189 infB translation init 91.3 0.2 4.4E-06 46.0 3.4 25 202-226 242-266 (742)
462 PRK10733 hflB ATP-dependent me 91.3 0.16 3.4E-06 46.2 2.7 50 178-227 153-208 (644)
463 KOG0056 Heavy metal exporter H 91.3 0.17 3.8E-06 43.9 2.7 24 203-226 563-586 (790)
464 PLN03140 ABC transporter G fam 91.3 0.18 3.9E-06 50.0 3.2 24 203-226 190-213 (1470)
465 TIGR03498 FliI_clade3 flagella 91.3 0.22 4.8E-06 42.6 3.4 23 205-227 141-163 (418)
466 KOG2743 Cobalamin synthesis pr 91.2 0.48 1E-05 38.5 5.0 27 201-227 54-80 (391)
467 PRK13826 Dtr system oriT relax 91.2 0.29 6.4E-06 46.8 4.4 22 205-226 398-419 (1102)
468 TIGR00487 IF-2 translation ini 91.2 0.23 4.9E-06 44.6 3.5 25 202-226 85-109 (587)
469 PRK07594 type III secretion sy 91.2 0.18 3.9E-06 43.4 2.8 24 204-227 155-178 (433)
470 KOG1805 DNA replication helica 91.2 0.19 4.2E-06 46.7 3.1 33 183-223 672-704 (1100)
471 PRK07960 fliI flagellum-specif 91.2 0.17 3.7E-06 43.6 2.6 24 204-227 175-198 (455)
472 PRK12297 obgE GTPase CgtA; Rev 91.2 0.21 4.5E-06 43.0 3.1 23 204-226 158-180 (424)
473 PLN03140 ABC transporter G fam 91.2 0.18 4E-06 50.0 3.2 23 204-226 906-928 (1470)
474 PRK06820 type III secretion sy 91.1 0.23 4.9E-06 42.8 3.3 23 205-227 164-186 (440)
475 PRK07721 fliI flagellum-specif 91.1 0.21 4.5E-06 43.1 3.0 23 204-226 158-180 (438)
476 PF01580 FtsK_SpoIIIE: FtsK/Sp 91.0 0.2 4.3E-06 38.4 2.7 19 206-224 40-58 (205)
477 TIGR00957 MRP_assoc_pro multi 91.0 0.19 4.2E-06 50.2 3.1 23 204-226 1312-1334(1522)
478 PLN03130 ABC transporter C fam 91.0 0.19 4.2E-06 50.4 3.1 23 204-226 1265-1287(1622)
479 TIGR02546 III_secr_ATP type II 90.9 0.25 5.4E-06 42.5 3.4 24 204-227 145-168 (422)
480 TIGR00956 3a01205 Pleiotropic 90.8 0.21 4.4E-06 49.5 3.2 23 204-226 789-811 (1394)
481 TIGR03496 FliI_clade1 flagella 90.8 0.26 5.6E-06 42.2 3.4 23 205-227 138-160 (411)
482 PRK13709 conjugal transfer nic 90.6 0.36 7.9E-06 48.4 4.6 36 183-225 970-1005(1747)
483 TIGR01026 fliI_yscN ATPase Fli 90.5 0.28 6.1E-06 42.4 3.4 23 205-227 164-186 (440)
484 PRK09518 bifunctional cytidyla 90.5 0.28 6.1E-06 45.2 3.6 26 202-227 273-298 (712)
485 TIGR01271 CFTR_protein cystic 90.5 0.2 4.4E-06 49.9 2.8 23 204-226 1245-1267(1490)
486 PTZ00111 DNA replication licen 90.5 0.56 1.2E-05 43.9 5.4 49 178-226 451-514 (915)
487 COG3910 Predicted ATPase [Gene 90.5 0.29 6.2E-06 37.1 3.0 21 204-224 37-57 (233)
488 PTZ00243 ABC transporter; Prov 90.5 0.23 4.9E-06 49.7 3.1 23 204-226 1336-1358(1560)
489 PRK09099 type III secretion sy 90.4 0.31 6.6E-06 42.1 3.5 24 204-227 163-186 (441)
490 PRK07940 DNA polymerase III su 90.3 0.2 4.3E-06 42.7 2.3 21 204-224 36-56 (394)
491 PRK11670 antiporter inner memb 90.3 0.28 6.1E-06 41.4 3.2 21 204-224 107-128 (369)
492 COG1373 Predicted ATPase (AAA+ 90.2 0.4 8.8E-06 40.9 4.1 20 206-225 39-58 (398)
493 KOG0989 Replication factor C, 90.2 0.46 9.9E-06 38.7 4.1 42 177-224 36-77 (346)
494 TIGR01257 rim_protein retinal- 90.2 0.28 6E-06 50.3 3.5 23 205-227 1966-1988(2272)
495 PRK13796 GTPase YqeH; Provisio 90.2 0.43 9.3E-06 40.3 4.2 22 205-226 161-182 (365)
496 COG3598 RepA RecA-family ATPas 90.2 0.41 8.9E-06 39.3 3.8 19 207-225 92-110 (402)
497 KOG0927 Predicted transporter 90.2 0.26 5.7E-06 43.1 2.9 24 205-228 102-125 (614)
498 PRK12678 transcription termina 90.1 0.27 5.9E-06 43.7 3.0 22 205-226 417-438 (672)
499 TIGR03497 FliI_clade2 flagella 90.0 0.33 7.2E-06 41.6 3.4 24 204-227 137-160 (413)
500 PF08423 Rad51: Rad51; InterP 90.0 0.39 8.5E-06 38.4 3.6 24 202-225 36-59 (256)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.84 E-value=4.5e-20 Score=167.44 Aligned_cols=199 Identities=20% Similarity=0.282 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHhhhhhhhhhhh
Q 037814 4 AIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEW 83 (229)
Q Consensus 4 ~~v~~~~~~l~~~l~~~l~~~~~~~~~~~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~yd~eD~lD~~ 83 (229)
+.++..++++.+. +.+....+.+.++.+..|++.|..++.++++++........+..|...++++.|+++|+++.|
T Consensus 3 ~~~s~~~~~~~~~----l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~ 78 (889)
T KOG4658|consen 3 ACVSFGVEKLDQL----LNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLF 78 (889)
T ss_pred eEEEEehhhHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666665 778888899999999999999999999999999998888999999999999999999999999
Q ss_pred HHHHHHHHhhccCCccccCCCcccccccccCCccccccCchhhhHHHHHHHHHHHHHHHHHHHHhhhhCCcccccccc--
Q 037814 84 NTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFARKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSN-- 161 (229)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~-- 161 (229)
.......+..+.- .......+.+ |.+ .++++.+..+..+..++..+.+....+..........
T Consensus 79 ~v~~~~~~~~~~l-------~~~~~~~~~~----c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~ 143 (889)
T KOG4658|consen 79 LVEEIERKANDLL-------STRSVERQRL----CLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGES 143 (889)
T ss_pred HHHHHHHHHhHHh-------hhhHHHHHHH----hhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccc
Confidence 9666554322110 0000000100 001 3344455555555555555544444444322111111
Q ss_pred cccCCCCCCCCCCCCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814 162 ERADQRVPSISSIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNND 228 (229)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~ 228 (229)
......+++.+..+... ||.+..++++++.|++++ ..|++|+||||+||||||++|||+.
T Consensus 144 ~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~ 203 (889)
T KOG4658|consen 144 LDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKF 203 (889)
T ss_pred ccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhccc
Confidence 11122344555555555 999999999999999876 2899999999999999999999985
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.99 E-value=4.4e-10 Score=106.80 Aligned_cols=48 Identities=29% Similarity=0.449 Sum_probs=42.0
Q ss_pred CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
...+||++.++++|..+|.-+. ++.+||+||||||+||||||+.+|+.
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~~ 230 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFSR 230 (1153)
T ss_pred cccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHHH
Confidence 3569999999999999885443 56899999999999999999999875
No 3
>PTZ00202 tuzin; Provisional
Probab=98.30 E-value=1.2e-05 Score=67.93 Aligned_cols=50 Identities=26% Similarity=0.359 Sum_probs=40.5
Q ss_pred CCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 175 DESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 175 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
+...++||+.+...|...|.+.+. .-..++.|.|++|+|||||++.+...
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~ 309 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRK 309 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345799999999999999965432 23469999999999999999987653
No 4
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.03 E-value=5.8e-06 Score=69.40 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=40.4
Q ss_pred CCCCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 173 SIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 173 ~~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+.+..++||+.+.+.|..+|...-. ......+-|+|.+|+||||+++.+++
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~ 62 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMK 62 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 33345799999999999999864221 12335689999999999999999986
No 5
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.94 E-value=9.9e-06 Score=66.96 Aligned_cols=51 Identities=24% Similarity=0.375 Sum_probs=41.3
Q ss_pred CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..+++|.++.++++++++..........-+++.++|..|+||||||+.+.+
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~ 100 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKR 100 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999764321124578999999999999999998754
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.89 E-value=1.5e-05 Score=67.65 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=39.0
Q ss_pred CCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 175 DESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 175 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+..++||+++.++|...|...-.. .....+-|+|..|+||||+++.++++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~--~~~~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG--SRPLNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC--CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999998543210 22344679999999999999999864
No 7
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.78 E-value=0.0012 Score=48.01 Aligned_cols=83 Identities=10% Similarity=0.209 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcccC-cHHHHHHHHHHHHHhhhhhhhh
Q 037814 2 VDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVK-EETVRLWLDQLRDACYDMEDVL 80 (229)
Q Consensus 2 a~~~v~~~~~~l~~~l~~~l~~~~~~~~~~~~~l~~L~~~l~~i~~~l~~a~~~~~~-~~~~~~wl~~l~~~~yd~eD~l 80 (229)
|+.+.+++++.+.+.|...+.+.......++.-+++|..+++.|..++.+.+..+.. +..-..-++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 455566666666666666677777778889999999999999999999999986432 2333777889999999999999
Q ss_pred hhhH
Q 037814 81 GEWN 84 (229)
Q Consensus 81 D~~~ 84 (229)
+.|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 8876
No 8
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.67 E-value=3.4e-05 Score=63.89 Aligned_cols=50 Identities=32% Similarity=0.387 Sum_probs=38.2
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+++|++..++.+..++..... .......+-|+|..|+||||||+.+.+.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 4699999999999888864211 0133567789999999999999998653
No 9
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.63 E-value=7e-05 Score=57.89 Aligned_cols=50 Identities=28% Similarity=0.359 Sum_probs=32.5
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+++|-+.-+..+.-++..... ..+.+.-+-.||.+|+||||||+.|-+.
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc
Confidence 4689998888877655532110 1145788889999999999999988653
No 10
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.56 E-value=0.0002 Score=61.07 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=35.7
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++++.+...+.+...|... +.|.++|++|+||||||+.+.+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~ 216 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAY 216 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHH
Confidence 45888899999999998743 4677899999999999999865
No 11
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.51 E-value=0.00013 Score=58.47 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.8
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
-.++.|+|..|+|||||++.+++.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999999875
No 12
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.47 E-value=0.00014 Score=63.54 Aligned_cols=49 Identities=24% Similarity=0.354 Sum_probs=37.8
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+++|.++.+++|++.|....-.-...-+|+.++|..|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999221100013457999999999999999998753
No 13
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.44 E-value=0.00011 Score=62.91 Aligned_cols=44 Identities=30% Similarity=0.315 Sum_probs=32.7
Q ss_pred cceechhhHHH---HHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 178 EIFGREKEKNE---LVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 178 ~~vG~~~~~~~---l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
+++|.+..+.. |..++.... ...+-++|.+|+||||||+.+.+.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~~------~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAGR------LSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcCC------CceEEEECCCCCCHHHHHHHHHHH
Confidence 57777766544 666664433 456788999999999999998763
No 14
>PRK04195 replication factor C large subunit; Provisional
Probab=97.37 E-value=0.00017 Score=62.90 Aligned_cols=49 Identities=33% Similarity=0.424 Sum_probs=39.7
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+++|.+..++.|..|+..... ....+.+-|+|..|+||||||+.+.++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999965321 122678899999999999999998764
No 15
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00018 Score=63.83 Aligned_cols=48 Identities=29% Similarity=0.448 Sum_probs=37.3
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+-+|.+..++.|+++|--..-...-+=.+++.||.+|||||.|++.|-
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA 371 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIA 371 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHH
Confidence 568999999999999843221111334799999999999999999874
No 16
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.32 E-value=0.00029 Score=57.95 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=38.7
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+++|.+...+.+..++..+. -..++-++|..|+||||||+.+++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 468999999999999987543 2468888999999999999998763
No 17
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=97.31 E-value=0.0013 Score=52.98 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc-ccCcHHHHHHHHHHHHHhhhhhhhhhh
Q 037814 4 AIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKR-QVKEETVRLWLDQLRDACYDMEDVLGE 82 (229)
Q Consensus 4 ~~v~~~~~~l~~~l~~~l~~~~~~~~~~~~~l~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~wl~~l~~~~yd~eD~lD~ 82 (229)
+.|..+++++-+. .......+.-++.+++-++.+|+.++.||+..-.. +..-+....+..++-..||++|-++|-
T Consensus 296 GyVdFlL~NLkdf----q~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDa 371 (402)
T PF12061_consen 296 GYVDFLLKNLKDF----QGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDA 371 (402)
T ss_pred cHHHHHHhhHHHH----hccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeeh
Confidence 3566677777765 44444556778999999999999999999988543 333455999999999999999999998
Q ss_pred hH
Q 037814 83 WN 84 (229)
Q Consensus 83 ~~ 84 (229)
+.
T Consensus 372 Ci 373 (402)
T PF12061_consen 372 CI 373 (402)
T ss_pred hh
Confidence 76
No 18
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.30 E-value=0.00025 Score=65.74 Aligned_cols=43 Identities=30% Similarity=0.418 Sum_probs=35.2
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++||+.+.+.++++|..... -.+ -+||.+|+|||++|+.+..
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~-----~n~-lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTK-----NNP-ILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCcHHHHHHHHHHHccccc-----CCe-EEECCCCCCHHHHHHHHHH
Confidence 589999999999999975431 233 5999999999999987643
No 19
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.27 E-value=0.00022 Score=44.83 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=18.6
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 037814 206 IISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+|.|.|..|+||||+++.+-+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998754
No 20
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.27 E-value=0.00033 Score=58.06 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=35.8
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|++..++.|..++..+. +..+-++|..|+||||||+.+.+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~------~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN------LPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999886543 34577999999999999988654
No 21
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.23 E-value=0.00036 Score=64.76 Aligned_cols=43 Identities=26% Similarity=0.396 Sum_probs=35.5
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++||+.+...++++|.... ..-+-+||.+|+||||||+.+-+
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred cccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHH
Confidence 68999999999999997654 23345999999999999998654
No 22
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0035 Score=55.94 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=39.3
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+-+|+++-++.|+++|--..-..+-+=+|++.+|.+|||||.+++.|-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA 459 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIA 459 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHH
Confidence 3578999999999999854332223556899999999999999999874
No 23
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.22 E-value=0.0021 Score=59.35 Aligned_cols=49 Identities=27% Similarity=0.422 Sum_probs=36.6
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+++|.+..++.|.+++....-....+-.++.++|..|+||||||+.+.+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999877432100112335899999999999999998864
No 24
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.21 E-value=0.00032 Score=58.97 Aligned_cols=52 Identities=25% Similarity=0.255 Sum_probs=37.9
Q ss_pred CCcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 176 ESEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 176 ~~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..++.|++..++.|.+.+...-.+ .-...+-+-++|.+|+||||||+.+.+.
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999998877421100 0012345889999999999999999764
No 25
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.19 E-value=0.00046 Score=61.86 Aligned_cols=43 Identities=37% Similarity=0.552 Sum_probs=35.8
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+++|.+..+..+.+.+... ....+.|+|.+|+||||||+.+++
T Consensus 155 ~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~ 197 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALE 197 (615)
T ss_pred hceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHH
Confidence 5899999999888877432 245799999999999999999875
No 26
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.16 E-value=0.00035 Score=55.65 Aligned_cols=49 Identities=33% Similarity=0.412 Sum_probs=38.5
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.++-+++|.=++..... ....+--+-++|.+|+||||||..|-|
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~ 74 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIAN 74 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHH
Confidence 3689999999988776654321 225588999999999999999998765
No 27
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.15 E-value=0.00078 Score=54.62 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=20.6
Q ss_pred CCCEEEEEecCCCCcHHHHHHHH
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
+...||+|.|..|+||||||+.+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L 82 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARIL 82 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 55789999999999999999865
No 28
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.15 E-value=0.00049 Score=63.99 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=34.8
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.++||+.+.+.+++.|.... ..-+-+||.+|+||||||+.+-
T Consensus 179 ~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la 220 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLA 220 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHH
Confidence 58999999999999997654 2334489999999999998764
No 29
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.14 E-value=0.00055 Score=56.28 Aligned_cols=44 Identities=27% Similarity=0.252 Sum_probs=36.8
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|++..++.|..++.... ...+-|+|..|+||||+++.+.+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~------~~~~ll~G~~G~GKt~~~~~l~~ 60 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN------MPHLLFAGPPGTGKTTAALALAR 60 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999986543 34579999999999999999865
No 30
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.13 E-value=0.00024 Score=59.46 Aligned_cols=23 Identities=30% Similarity=0.143 Sum_probs=20.7
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.-..|+|.+|+|||||++.||++
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~ 192 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANS 192 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHH
Confidence 46789999999999999999985
No 31
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.13 E-value=0.00053 Score=62.84 Aligned_cols=43 Identities=30% Similarity=0.337 Sum_probs=35.3
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++||+.+.+.+++.|.... ..=+-+||.+|+|||+||+.+.+
T Consensus 183 ~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred cccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHH
Confidence 58999999999999996553 22345999999999999998754
No 32
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.11 E-value=0.00076 Score=52.60 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=30.5
Q ss_pred chhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 182 REKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 182 ~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+..++.+.+|+... .-..|-|+|..|+||||||+.+++
T Consensus 22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~ 60 (226)
T TIGR03420 22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACA 60 (226)
T ss_pred cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHH
Confidence 455677788876432 246888999999999999999875
No 33
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.08 E-value=0.0011 Score=48.79 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=29.7
Q ss_pred hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
...+.|.++|. + +++.++|..|||||||+..+..+
T Consensus 24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45788888884 3 69999999999999999998765
No 34
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.05 E-value=0.00066 Score=61.76 Aligned_cols=44 Identities=30% Similarity=0.386 Sum_probs=32.6
Q ss_pred cceechhhHH---HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 178 EIFGREKEKN---ELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 178 ~~vG~~~~~~---~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
+++|.+..+. .|.+++..+ .+.-+-++|.+|+||||||+.+.+.
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 5788877664 455555443 3456689999999999999998763
No 35
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.00 E-value=0.00044 Score=58.67 Aligned_cols=51 Identities=25% Similarity=0.276 Sum_probs=37.3
Q ss_pred CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
+++.|++..+++|.+.+...-.. .-...+-|-++|.+|+|||+||+.+.+.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 46899999999998876321100 0123456889999999999999999763
No 36
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.00 E-value=0.0013 Score=46.97 Aligned_cols=23 Identities=39% Similarity=0.371 Sum_probs=20.8
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-.+|.+.|.-|+|||||+|.+.+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~ 44 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQ 44 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999999999865
No 37
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.98 E-value=0.0015 Score=51.05 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.8
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
...+-|+|..|+|||+||+.+++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999998763
No 38
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.92 E-value=0.00087 Score=61.67 Aligned_cols=49 Identities=31% Similarity=0.470 Sum_probs=37.9
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+.+|.+..++.|++||......+...-.++.++|..|+||||+++.+..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999998632111113346899999999999999998764
No 39
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.92 E-value=0.001 Score=62.08 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=34.8
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++||+.+.+.+++.|.... ..-+-+||.+|+|||+||+.+..
T Consensus 174 ~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHH
Confidence 58999999999999996643 23334899999999999987643
No 40
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.0016 Score=54.72 Aligned_cols=45 Identities=27% Similarity=0.365 Sum_probs=36.6
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|-+.-++.+...+..+.- ...+-++|..|+||||||+.+-+
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~-----~h~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRI-----HHAWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCC-----CeEEEEecCCCCCHHHHHHHHHH
Confidence 3689999999999988875432 35678999999999999988753
No 41
>PRK09087 hypothetical protein; Validated
Probab=96.87 E-value=0.0024 Score=50.04 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.0
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
-..+.|||..|+|||||++.+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999988754
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.0012 Score=55.03 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=29.8
Q ss_pred CCCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 174 IDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 174 ~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+.+..++|-+.....+++ . ..+.-.-.||.+|+||||||+.|-.
T Consensus 27 vGQ~HLlg~~~~lrr~v~---~------~~l~SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---A------GHLHSMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred cChHhhhCCCchHHHHHh---c------CCCceeEEECCCCCCHHHHHHHHHH
Confidence 333445555555555553 2 3466667999999999999998743
No 43
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.84 E-value=0.0014 Score=54.19 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.1
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..+.-+-.||.+|+||||||+.+-+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~t 185 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIAST 185 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhh
Confidence 34777889999999999999998654
No 44
>CHL00181 cbbX CbbX; Provisional
Probab=96.82 E-value=0.0022 Score=52.11 Aligned_cols=49 Identities=22% Similarity=0.220 Sum_probs=31.6
Q ss_pred cceechhhHHHHHHHhh---cC------CCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLL---CE------SSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~---~~------~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+++|.+..+++|.++.. -. .-.....-..+-++|.+|+||||+|+.+.+
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 57888777776655431 11 000012233578899999999999999843
No 45
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.80 E-value=0.0017 Score=57.20 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.5
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
++..+|+|.|..|+||||||+.+..
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHh
Confidence 5589999999999999999999864
No 46
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.79 E-value=0.0017 Score=59.66 Aligned_cols=51 Identities=25% Similarity=0.230 Sum_probs=39.1
Q ss_pred CCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 175 DESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 175 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+..+.||+++.++|...|...-.. ...-.++=|+|.+|.|||+.++.|.+
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLr 803 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQ 803 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3357999999999999988643211 12236778999999999999999864
No 47
>PRK05439 pantothenate kinase; Provisional
Probab=96.76 E-value=0.0026 Score=52.05 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=21.6
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
...-||+|-|..|+||||||+.+-
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~ 107 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQ 107 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 567899999999999999998864
No 48
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.0021 Score=55.85 Aligned_cols=45 Identities=31% Similarity=0.404 Sum_probs=34.9
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+.-+..|...+..+. -...+-++|..|+||||+|+.+-+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999888788877776543 135678999999999999998743
No 49
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.74 E-value=0.0015 Score=44.70 Aligned_cols=22 Identities=36% Similarity=0.342 Sum_probs=19.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-..++|+|..|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999864
No 50
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.74 E-value=0.0018 Score=59.27 Aligned_cols=43 Identities=33% Similarity=0.387 Sum_probs=35.2
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++||+.+++.+++.|..... ..+ -++|.+|+|||+||+.+.+
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~-----~n~-LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRK-----NNP-LLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCC-----CCe-EEECCCCCCHHHHHHHHHH
Confidence 589999999999999976431 233 4799999999999998764
No 51
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.71 E-value=0.0032 Score=51.87 Aligned_cols=24 Identities=42% Similarity=0.556 Sum_probs=20.8
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+..||.++|.+|+||||++..+-
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA 135 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLA 135 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHH
Confidence 346899999999999999998763
No 52
>PRK06620 hypothetical protein; Validated
Probab=96.71 E-value=0.0051 Score=47.80 Aligned_cols=52 Identities=17% Similarity=0.042 Sum_probs=31.8
Q ss_pred CCCcceechh--hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814 175 DESEIFGREK--EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNND 228 (229)
Q Consensus 175 ~~~~~vG~~~--~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~ 228 (229)
.++-++|-.+ ....+.+|-..... .+....+-|||..|+|||+|++.+++..
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~~--~~~~~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFGV--NPYKFTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHcccc--CCCcceEEEECCCCCCHHHHHHHHHhcc
Confidence 4445677622 34444544321110 0112568999999999999999987653
No 53
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.70 E-value=0.0016 Score=50.01 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.5
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
++...|+|+|.+|+|||||.+.+.++
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcc
Confidence 34579999999999999999988765
No 54
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.69 E-value=0.0032 Score=51.05 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.2
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+..+|.|+|..|+||||++..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999988764
No 55
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.69 E-value=0.0038 Score=49.21 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
...+-|+|..|+|||+|++.+++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999998875
No 56
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.66 E-value=0.0039 Score=45.85 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=21.2
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcCC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNND 228 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d~ 228 (229)
-..|+++|+.|+||+||...+..++
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCC
Confidence 3568899999999999999987653
No 57
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.0025 Score=56.17 Aligned_cols=44 Identities=30% Similarity=0.431 Sum_probs=36.0
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+++|-+..++.|...+..+. -...+-++|..|+||||||+.+.+
T Consensus 17 diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999886543 235577899999999999998754
No 58
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.0029 Score=53.30 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.3
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+.++|+|+|.+|+||||++..+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHH
Confidence 45899999999999999998874
No 59
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.65 E-value=0.0023 Score=55.18 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=35.3
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|+++..+.+...+..+. -|-|.|.+|+||||||+.+-.
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHH
Confidence 48999999999999887665 466999999999999998754
No 60
>PLN02796 D-glycerate 3-kinase
Probab=96.64 E-value=0.0019 Score=53.36 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=22.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
...-+|+|.|..|+|||||++.+..
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 4568999999999999999998864
No 61
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.59 E-value=0.0042 Score=53.02 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.1
Q ss_pred CCCEEEEEecCCCCcHHHHHHHH
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
....||.+||..|+||||++..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKL 120 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKL 120 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 34689999999999999988776
No 62
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.59 E-value=0.0037 Score=50.53 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.4
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+..+|.|+|..|+|||||+..+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999987754
No 63
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.57 E-value=0.0033 Score=55.09 Aligned_cols=44 Identities=30% Similarity=0.335 Sum_probs=36.0
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+++|-+.-++.|..++..+.- ...+-++|..|+||||+|+.+.+
T Consensus 15 dvvGq~~v~~~L~~~i~~~~l-----~ha~Lf~GppGtGKTTlA~~lA~ 58 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGRL-----GHAYLFSGPRGVGKTTTARLIAM 58 (504)
T ss_pred HhcChHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHH
Confidence 589999989999888876432 35679999999999999998754
No 64
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.56 E-value=0.002 Score=50.44 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.4
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 6999999999999999999864
No 65
>PLN02200 adenylate kinase family protein
Probab=96.56 E-value=0.0025 Score=50.18 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=21.4
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+...+|.|+|++|+||||+|+.+-+
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4467999999999999999998754
No 66
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.55 E-value=0.0041 Score=51.40 Aligned_cols=52 Identities=31% Similarity=0.407 Sum_probs=42.1
Q ss_pred CCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 175 DESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 175 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+.+++|+++..++|++.|....-.....-+|+-++|.-|.|||||+..+-+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999654322236679999999999999999998743
No 67
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.0038 Score=55.81 Aligned_cols=43 Identities=26% Similarity=0.378 Sum_probs=36.4
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+++|.+..++.|..++..+.. ...+-++|..|+||||+|+.+
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl-----~HAyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRL-----HHAYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHH
Confidence 3689999999999999976542 467789999999999999876
No 68
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.0036 Score=53.31 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=35.1
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|-+.-++.|..++..+.. ..-+-++|..|+||||+|+.+-
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~-----~ha~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRV-----GHGYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCc-----ceeEEEECCCCCCHHHHHHHHH
Confidence 3689999999999998875432 3457789999999999998753
No 69
>PRK08727 hypothetical protein; Validated
Probab=96.52 E-value=0.0059 Score=48.07 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-+-|+|..|+|||+|++.+++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~ 63 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCA 63 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999865
No 70
>PRK06893 DNA replication initiation factor; Validated
Probab=96.50 E-value=0.0068 Score=47.60 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=20.6
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..+-|||..|+|||+|++.+++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999863
No 71
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.48 E-value=0.0046 Score=51.70 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=36.2
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|.+..++.|.+++..+.. ...+-++|..|+||||+|+.+-
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~-----~~~~Ll~G~~G~GKt~~a~~la 57 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRI-----AHAYLFSGPRGTGKTSIARIFA 57 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999975532 3577899999999999997763
No 72
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.47 E-value=0.0044 Score=53.14 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=18.1
Q ss_pred CEEEEEecCCCCcHHHHHHHH
Q 037814 204 PRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~v 224 (229)
-.++.++|.+|+||||++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kL 241 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKL 241 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 469999999999999977664
No 73
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.47 E-value=0.0025 Score=50.12 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5999999999999999999864
No 74
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.004 Score=53.82 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=36.2
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|-+.-+..|..++..+.- ...+-++|..|+||||+|+.+-+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri-----~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKI-----GHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999998876541 24578999999999999998743
No 75
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.46 E-value=0.0023 Score=54.41 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=22.1
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-.+.|+|+|..|+|||||++.+.+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4588999999999999999998764
No 76
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.45 E-value=0.0033 Score=50.68 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=19.8
Q ss_pred CCCEEEEEecCCCCcHHHHHHHH
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+.++|.++|.+|+||||++..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akL 92 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKL 92 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHH
Confidence 44689999999999999987765
No 77
>PLN02348 phosphoribulokinase
Probab=96.45 E-value=0.0032 Score=52.91 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+..-+|+|.|-.|+||||||+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998764
No 78
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.45 E-value=0.0081 Score=42.25 Aligned_cols=44 Identities=25% Similarity=0.484 Sum_probs=31.6
Q ss_pred cceechhhHHHHHH----HhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 178 EIFGREKEKNELVN----RLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 178 ~~vG~~~~~~~l~~----~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.++|-+-..+.|++ .|.+.. +++.-|++..|..|+|||.+++.|
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~---p~KpLVlSfHG~tGtGKn~v~~li 73 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN---PRKPLVLSFHGWTGTGKNFVSRLI 73 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC---CCCCEEEEeecCCCCcHHHHHHHH
Confidence 46776555554444 444333 478899999999999999987765
No 79
>PRK10536 hypothetical protein; Provisional
Probab=96.43 E-value=0.0054 Score=48.69 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=32.8
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+.++......++.+|.+. .++.+.|..|+|||+||..+-
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a 95 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKA 95 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHH
Confidence 4677888888889888542 499999999999999998743
No 80
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.42 E-value=0.003 Score=50.63 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=20.7
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+...-+-++|.+|+||||+|+.+.+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHH
Confidence 3356678999999999999998853
No 81
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.41 E-value=0.0038 Score=51.95 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=37.4
Q ss_pred CCCCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 173 SIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 173 ~~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++-+.++|-+..+..|+-.+.+ +++.-|-|.|-.|+||||+|+.+|+
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~------p~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID------PKIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC------CCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 44556799999888888776654 3355566999999999999999864
No 82
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.41 E-value=0.0053 Score=50.80 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.5
Q ss_pred CCCEEEEEecCCCCcHHHHHHHH
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+..+|+|.|.+|+|||||+..+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l 76 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEAL 76 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHH
Confidence 45689999999999999999875
No 83
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.0051 Score=56.80 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=36.8
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+|+|-+.-++.|..++..+.- ...+-++|..|+||||+|+.+.+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl-----~HAyLFtGPpGtGKTTLARiLAk 60 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRL-----HHAYLFTGTRGVGKTSLARLFAK 60 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCC-----CeEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999998876532 34567999999999999998764
No 84
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.36 E-value=0.0049 Score=54.70 Aligned_cols=43 Identities=35% Similarity=0.473 Sum_probs=35.5
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+++|.+.-++.+..++..+.- ..-+-++|..|+||||+|+.+
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl-----~hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKL-----THAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CceEEEECCCCCCHHHHHHHH
Confidence 3689999999999998865432 356779999999999999886
No 85
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.35 E-value=0.0029 Score=50.21 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.0
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-.+++|||-.|+|||||++.|-
T Consensus 39 ge~~glVGESG~GKSTlgr~i~ 60 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLIL 60 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHH
Confidence 4699999999999999999874
No 86
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.35 E-value=0.0032 Score=50.36 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6999999999999999999864
No 87
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.34 E-value=0.0048 Score=52.98 Aligned_cols=51 Identities=29% Similarity=0.331 Sum_probs=36.2
Q ss_pred CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.++.|.+..++.|.+.+.-.-.+ .-....-+-++|..|+|||+||+.|.+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 36789999999888876321000 0122345779999999999999999764
No 88
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0064 Score=51.09 Aligned_cols=47 Identities=32% Similarity=0.373 Sum_probs=35.8
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+.+|+.+.+++...|..--.++ ... -+-|+|..|+|||+.++.|.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~-~p~-n~~iyG~~GTGKT~~~~~v~~ 64 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGE-RPS-NIIIYGPTGTGKTATVKFVME 64 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCC-CCc-cEEEECCCCCCHhHHHHHHHH
Confidence 49999999999998875432111 112 288999999999999999875
No 89
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.31 E-value=0.0051 Score=52.28 Aligned_cols=51 Identities=31% Similarity=0.352 Sum_probs=36.4
Q ss_pred CcceechhhHHHHHHHhhcC--CCC-----CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCE--SSE-----ERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~--~~~-----~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.++.|.+..++.|.+.+.-. ..+ .-+..+-|-++|.+|+|||+||+.+.+.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999888765311 000 0123466889999999999999998764
No 90
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.31 E-value=0.0034 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~G 69 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSG 69 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6999999999999999999864
No 91
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.31 E-value=0.0036 Score=45.39 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcC
Confidence 6999999999999999998764
No 92
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.0059 Score=54.59 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=36.5
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.++||-+.-++.|.+++..+.- -..+-++|..|+||||||+.+-
T Consensus 16 ddVIGQe~vv~~L~~al~~gRL-----pHA~LFtGP~GvGKTTLAriLA 59 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRL-----HHAYLFTGTRGVGKTTLSRILA 59 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCC-----ceEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999976542 3567889999999999998864
No 93
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.29 E-value=0.0059 Score=54.96 Aligned_cols=44 Identities=30% Similarity=0.376 Sum_probs=36.6
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|.+..+..|..++..+.- ..-+-++|..|+||||+|+.+-
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl-----~Ha~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRL-----HHAYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCcHHHHHHHHH
Confidence 3689999999999999876532 3568899999999999998764
No 94
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.28 E-value=0.0057 Score=53.67 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=36.0
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|-+.-++.|..++..+.- ...+-++|..|+||||+|+.+-
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l-----~ha~Lf~Gp~G~GKTt~A~~lA 59 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYL-----HHAYLFTGTRGVGKTTISRILA 59 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCC-----CeeEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999976542 3457799999999999998764
No 95
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.25 E-value=0.0039 Score=49.86 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|+|..|.|||||++.+.
T Consensus 39 e~~~l~G~nGsGKSTLl~~l~ 59 (259)
T PRK14274 39 EVTAIIGPSGCGKSTFIKTLN 59 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999985
No 96
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.25 E-value=0.0072 Score=50.90 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=36.8
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+...+.+.+++..+.- ...+-++|..|+||||+|+.+-+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~-----~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHL-----AQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999875432 35888999999999999987643
No 97
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.24 E-value=0.0067 Score=54.44 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=39.2
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+++|-+..+..|..||....-. ...-.++.|+|..|+||||+++.+.+.
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998754321 123468999999999999999998753
No 98
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.24 E-value=0.0051 Score=52.16 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.5
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
...-||+|.|..|+|||||++.+.
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~ 233 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALD 233 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999999884
No 99
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.24 E-value=0.0037 Score=50.17 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~G 59 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLGR 59 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcC
Confidence 6999999999999999998864
No 100
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.23 E-value=0.0045 Score=50.26 Aligned_cols=47 Identities=26% Similarity=0.240 Sum_probs=29.0
Q ss_pred cceechhhHHHHHHHhhc---CC------CCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 178 EIFGREKEKNELVNRLLC---ES------SEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~---~~------~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
+++|.+..+++|.++..- .. -.......-+-++|.+|+||||+|+.+
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHH
Confidence 478887777776554221 00 000012235779999999999999654
No 101
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.23 E-value=0.004 Score=49.81 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.8
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|+|..|.|||||++.+.
T Consensus 40 e~~~i~G~nGsGKSTLl~~l~ 60 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLRTFN 60 (260)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 699999999999999999986
No 102
>PRK05642 DNA replication initiation factor; Validated
Probab=96.22 E-value=0.013 Score=46.08 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.4
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
...+-|+|..|+|||.|++.+++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~ 67 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL 67 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 36788999999999999999875
No 103
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.0041 Score=50.08 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~G 72 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINR 72 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6999999999999999998864
No 104
>PRK14974 cell division protein FtsY; Provisional
Probab=96.22 E-value=0.0049 Score=51.13 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=19.2
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+..+|.++|+.|+||||++..+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA 161 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLA 161 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 46899999999999999666543
No 105
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.21 E-value=0.009 Score=53.15 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.6
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+.-.+|-|+|+.|+||||+|+.+..
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~ 414 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMV 414 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHH
Confidence 4556899999999999999999864
No 106
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=96.21 E-value=0.004 Score=50.15 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 51 e~~~I~G~nGsGKSTLl~~i~G 72 (271)
T PRK14238 51 EVTAIIGPSGCGKSTYIKTLNR 72 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6999999999999999999863
No 107
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.19 E-value=0.007 Score=54.17 Aligned_cols=43 Identities=30% Similarity=0.438 Sum_probs=35.7
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
++++|-+.-+..|..++..+.- ...+-++|..|+||||+|+.+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl-----~ha~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRL-----HHAYLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHH
Confidence 3689999889999998876542 356789999999999999987
No 108
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=96.19 E-value=0.0044 Score=49.83 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 46 e~~~i~G~nGsGKSTLl~~l~G 67 (267)
T PRK14235 46 TVTAFIGPSGCGKSTFLRCLNR 67 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999999864
No 109
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.18 E-value=0.0042 Score=50.51 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 38 e~~~l~G~nGsGKSTLl~~l~G 59 (289)
T PRK13645 38 KVTCVIGTTGSGKSTMIQLTNG 59 (289)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6999999999999999998853
No 110
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=96.18 E-value=0.0044 Score=49.73 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.9
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|+|..|.|||||++.+.
T Consensus 37 e~~~i~G~nGsGKSTLl~~l~ 57 (264)
T PRK14243 37 QITAFIGPSGCGKSTILRCFN 57 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999999986
No 111
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=96.18 E-value=0.0096 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=19.4
Q ss_pred CCCEEEEEecC-CCCcHHHHHHHH
Q 037814 202 KGPRIISLVGM-GGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG~-gGvGKTTLa~~v 224 (229)
..-+||+|+|. ||+||||+|-.+
T Consensus 91 ~~~~vIav~~~KGGvGkTT~a~nL 114 (322)
T TIGR03815 91 ARGVVVAVIGGRGGAGASTLAAAL 114 (322)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHH
Confidence 45799999985 999999998654
No 112
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.0072 Score=53.33 Aligned_cols=43 Identities=35% Similarity=0.452 Sum_probs=35.4
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+++|-+.-++.|..++..+.- ...+-++|..|+||||+|+.+
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~-----~ha~Lf~Gp~G~GKTt~A~~l 58 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRL-----HHAYLFTGTRGVGKTTLARIL 58 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CEEEEEECCCCCCHHHHHHHH
Confidence 3689999999999999876542 345679999999999999886
No 113
>PLN02165 adenylate isopentenyltransferase
Probab=96.17 E-value=0.0048 Score=50.80 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.2
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-.+|.|+|+.|+||||||..+..
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~ 65 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLAT 65 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 35999999999999999998754
No 114
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.16 E-value=0.0077 Score=54.72 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=35.3
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|.+..++.|..+|..+.- -..+-++|..|+||||+|+.+-
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL-----~HAyLFtGPpGvGKTTlAriLA 59 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRL-----HHAYLFTGTRGVGKTTLSRIFA 59 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCC-----CeEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999875542 3455699999999999998654
No 115
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.15 E-value=0.0046 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 40 e~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 40 KVTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6999999999999999999864
No 116
>PRK10867 signal recognition particle protein; Provisional
Probab=96.14 E-value=0.01 Score=50.85 Aligned_cols=23 Identities=48% Similarity=0.660 Sum_probs=18.8
Q ss_pred CCCEEEEEecCCCCcHHHHHHHH
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
....||.++|.+|+||||.+-.+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakL 120 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKL 120 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHH
Confidence 44789999999999999955443
No 117
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.14 E-value=0.0047 Score=48.28 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999998864
No 118
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.14 E-value=0.0045 Score=49.73 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 48 AVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999853
No 119
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.13 E-value=0.0066 Score=53.06 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=36.3
Q ss_pred CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.++.|.+..+++|.+.+.-.--+ .-+..+-|-++|.+|+|||+||+.+++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 45788999999988875321000 0122445789999999999999999874
No 120
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.13 E-value=0.004 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.078 Sum_probs=21.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..++|||.+|+|||||++.+++.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~ 191 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQA 191 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHh
Confidence 57899999999999999999885
No 121
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.11 E-value=0.005 Score=47.72 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhC
Confidence 6899999999999999999864
No 122
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0049 Score=49.73 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=19.9
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|+|..|.|||||++.+.
T Consensus 47 e~~~IiG~nGsGKSTLl~~l~ 67 (274)
T PRK14265 47 KIIAFIGPSGCGKSTLLRCFN 67 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999987
No 123
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=96.10 E-value=0.0051 Score=49.44 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 47 e~~~I~G~nGsGKSTLl~~l~G 68 (267)
T PRK14237 47 KITALIGPSGSGKSTYLRSLNR 68 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5999999999999999999874
No 124
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.10 E-value=0.005 Score=49.59 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||.+.+..
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~G 57 (271)
T PRK13632 36 EYVAILGHNGSGKSTISKILTG 57 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6999999999999999998764
No 125
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.09 E-value=0.005 Score=49.42 Aligned_cols=22 Identities=41% Similarity=0.684 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 51 e~~~liG~NGsGKSTLlk~L~G 72 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSNIIGG 72 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5999999999999999999864
No 126
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.09 E-value=0.0083 Score=47.51 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=40.4
Q ss_pred CcceechhhHH---HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcCCC
Q 037814 177 SEIFGREKEKN---ELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNNDD 229 (229)
Q Consensus 177 ~~~vG~~~~~~---~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~~ 229 (229)
++++|-++.+. -|+++|.+.+.=..+..+-|-.+|..|.|||-+|+.+-|..+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k 176 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK 176 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC
Confidence 46899877665 467888665422346678888999999999999999987653
No 127
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.08 E-value=0.0088 Score=50.38 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=27.9
Q ss_pred hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++.+++..++.... ....++|+|+|..|+|||||+..+..
T Consensus 187 peDl~~l~~~~~~~~---~~~~~~~~~~g~~~~GKtt~~~~l~~ 227 (366)
T PRK14489 187 PEDLEQLRAIPDGTT---TGAPPLLGVVGYSGTGKTTLLEKLIP 227 (366)
T ss_pred HHHHHHHhhhhhccc---CCCccEEEEecCCCCCHHHHHHHHHH
Confidence 344555555432211 12467999999999999999988764
No 128
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.05 E-value=0.005 Score=53.70 Aligned_cols=21 Identities=43% Similarity=0.627 Sum_probs=19.2
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|||-.|+||||||+.+-
T Consensus 318 E~lglVGeSGsGKSTlar~i~ 338 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILA 338 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999873
No 129
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.04 E-value=0.0051 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-.++.++|..|+||||++.++-
T Consensus 137 g~ii~lvGptGvGKTTtiakLA 158 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLA 158 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3699999999999999998863
No 130
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.03 E-value=0.01 Score=50.50 Aligned_cols=49 Identities=24% Similarity=0.377 Sum_probs=35.2
Q ss_pred CcceechhhHHHHHHHhhcC--------CCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKNELVNRLLCE--------SSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~--------~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..++|.+..++.+..++... .........-|-++|..|+||||||+.+-
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LA 71 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLA 71 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHH
Confidence 35899999999988877541 10000113678899999999999999764
No 131
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.03 E-value=0.012 Score=50.49 Aligned_cols=24 Identities=46% Similarity=0.522 Sum_probs=20.9
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
....+|.++|..|+||||++..+.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHH
Confidence 347899999999999999998764
No 132
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.03 E-value=0.009 Score=52.03 Aligned_cols=44 Identities=32% Similarity=0.453 Sum_probs=34.7
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|-+.-++.|...+..+.- ..-+-++|..|+||||+|+.+-
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri-----~ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKI-----PQSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CceEEEECCCCccHHHHHHHHH
Confidence 3689999888888887765431 2467899999999999998763
No 133
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.02 E-value=0.006 Score=47.66 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|.|||||++.+.-
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~G 62 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLEN 62 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36999999999999999998864
No 134
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.0058 Score=51.92 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.8
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..+|.|+|.+|+||||++.++-
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA 244 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLA 244 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5799999999999999998864
No 135
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.01 E-value=0.0059 Score=49.63 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||.+.+.-
T Consensus 66 e~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 66 YVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6999999999999999999864
No 136
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.01 Score=51.96 Aligned_cols=23 Identities=39% Similarity=0.388 Sum_probs=20.0
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-.+|+|+|.+|+||||++..+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35899999999999999997764
No 137
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.00 E-value=0.006 Score=49.07 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||.+.+..
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~G 57 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMIG 57 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6999999999999999999864
No 138
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.99 E-value=0.0097 Score=52.61 Aligned_cols=43 Identities=30% Similarity=0.485 Sum_probs=34.5
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+++|.+..++.+...+.... ..-+-|+|..|+||||+|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~~------~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPN------PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHH
Confidence 58999999999988765432 23456899999999999999974
No 139
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.97 E-value=0.0084 Score=55.18 Aligned_cols=51 Identities=25% Similarity=0.288 Sum_probs=36.2
Q ss_pred CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.++.|.+..++.|.+++...-.+ .-...+-|-++|..|+||||||+.+.+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 35889999999998876421000 0022345779999999999999998763
No 140
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.97 E-value=0.0063 Score=49.18 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+.-
T Consensus 48 e~~~I~G~nGsGKSTLl~~l~G 69 (276)
T PRK14271 48 AVTSLMGPTGSGKTTFLRTLNR 69 (276)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999864
No 141
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.97 E-value=0.01 Score=53.36 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=35.9
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|-+.-+..|...+..+.- ...+-++|..|+||||+|+.+.+
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl-----~hAyLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRL-----HHAYLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999988865432 24567999999999999998743
No 142
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.96 E-value=0.0062 Score=48.64 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 39 e~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 39 SVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999863
No 143
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=95.96 E-value=0.0063 Score=50.45 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 42 e~~~IvG~sGsGKSTLl~~l~g 63 (327)
T PRK11308 42 KTLAVVGESGCGKSTLARLLTM 63 (327)
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 5999999999999999999864
No 144
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.95 E-value=0.0099 Score=53.14 Aligned_cols=44 Identities=27% Similarity=0.413 Sum_probs=36.3
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|.+..++.|..++..+.- ..-+-++|..|+||||+|+.+-
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri-----~ha~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRI-----AQAFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CceEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999876542 3467789999999999999874
No 145
>PRK00098 GTPase RsgA; Reviewed
Probab=95.95 E-value=0.011 Score=48.43 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=26.6
Q ss_pred hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..+.|.++|.+ ++++++|..|+|||||.+.+...
T Consensus 154 gi~~L~~~l~g---------k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 154 GLDELKPLLAG---------KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred cHHHHHhhccC---------ceEEEECCCCCCHHHHHHHHhCC
Confidence 35667776631 48899999999999999988654
No 146
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.012 Score=52.90 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=34.5
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+++|-+.-++.|..++..+.- ..-+-++|..|+||||+|+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri-----~ha~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRV-----GHGYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CeeEEEECCCCCCHHHHHHHH
Confidence 3689999999999998865432 345789999999999999764
No 147
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=95.94 E-value=0.0066 Score=48.81 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||.+.+..
T Consensus 40 e~~~i~G~NGsGKSTLl~~l~G 61 (267)
T PRK15112 40 QTLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred CEEEEEcCCCCCHHHHHHHHhC
Confidence 5999999999999999998764
No 148
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.93 E-value=0.0062 Score=50.56 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 43 e~~~ivG~sGsGKSTL~~~l~G 64 (330)
T PRK09473 43 ETLGIVGESGSGKSQTAFALMG 64 (330)
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 5999999999999999999863
No 149
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.0089 Score=54.41 Aligned_cols=39 Identities=31% Similarity=0.558 Sum_probs=31.2
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHH
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQ 222 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~ 222 (229)
.++||+.+.+.+++.|.-.. ++-.| .||-+|||||++|.
T Consensus 171 PvIGRd~EI~r~iqIL~RR~----KNNPv--LiGEpGVGKTAIvE 209 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRT----KNNPV--LVGEPGVGKTAIVE 209 (786)
T ss_pred CCcChHHHHHHHHHHHhccC----CCCCe--EecCCCCCHHHHHH
Confidence 48999999999999998665 22233 58999999999764
No 150
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=95.93 E-value=0.0067 Score=48.69 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||.+.+..
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~G 59 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLARLLLG 59 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6999999999999999998764
No 151
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.91 E-value=0.0064 Score=52.74 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=19.5
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.|+++||..|+||||++.++.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred cEEEEECCCCccHHHHHHHHH
Confidence 799999999999999998875
No 152
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.91 E-value=0.012 Score=51.65 Aligned_cols=44 Identities=30% Similarity=0.336 Sum_probs=35.3
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+++|-+.-+..|...+..+.- ..-+-++|..|+||||+|+.+.+
T Consensus 22 dliGq~~vv~~L~~ai~~~ri-----~~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDRL-----AGGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCCC-----CceEEEECCCCCCHHHHHHHHHH
Confidence 689999999988887755431 35678999999999999998854
No 153
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.012 Score=52.51 Aligned_cols=44 Identities=25% Similarity=0.275 Sum_probs=36.1
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|-+.-++.|..++..+. -...+-++|..|+||||+|+.+-
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILA 56 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999987543 23567899999999999998764
No 154
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.90 E-value=0.0069 Score=50.04 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 53 e~~~I~G~nGsGKSTLl~~L~G 74 (320)
T PRK13631 53 KIYFIIGNSGSGKSTLVTHFNG 74 (320)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5999999999999999999864
No 155
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.90 E-value=0.0071 Score=49.06 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 64 e~~~liG~NGsGKSTLl~~I~G 85 (282)
T cd03291 64 EMLAITGSTGSGKTSLLMLILG 85 (282)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999874
No 156
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=95.89 E-value=0.0069 Score=48.81 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.6
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|+|..|.|||||++.+.
T Consensus 52 e~~~I~G~nGsGKSTLl~~la 72 (272)
T PRK14236 52 RVTAFIGPSGCGKSTLLRCFN 72 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999999984
No 157
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.86 E-value=0.012 Score=52.75 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=35.8
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|-+.-++.|..++..+.- ...+-++|..|+||||+|+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i-----~~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRV-----AHAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCC-----ceEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999988875431 3556799999999999999875
No 158
>PRK09183 transposase/IS protein; Provisional
Probab=95.86 E-value=0.0068 Score=48.53 Aligned_cols=22 Identities=41% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..+.|+|..|+|||+||..+.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4566999999999999998753
No 159
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.85 E-value=0.011 Score=36.09 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=17.3
Q ss_pred EEEEecCCCCcHHHHHHHH
Q 037814 206 IISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~v 224 (229)
+..|.|..|+|||||.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAI 43 (62)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 8999999999999998664
No 160
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.85 E-value=0.0077 Score=48.32 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 43 e~~~i~G~nGsGKSTLl~~l~G 64 (265)
T PRK14252 43 QVTALIGPSGCGKSTFLRCFNR 64 (265)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6999999999999999999863
No 161
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.82 E-value=0.017 Score=49.36 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=20.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
...+-|+|..|+|||+|++.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~ 158 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN 158 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45688999999999999999886
No 162
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.82 E-value=0.014 Score=49.69 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=33.4
Q ss_pred cceechhhHHHHHHHhhcC--------CCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCE--------SSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~--------~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|.++.++.+.-.|... .-......+-|-++|..|+||||||+.+-.
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 4788888888876555431 000011236688999999999999998753
No 163
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=95.81 E-value=0.0078 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 48 e~~~lvG~sGsGKSTLlk~i~G 69 (331)
T PRK15079 48 ETLGVVGESGCGKSTFARAIIG 69 (331)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 5999999999999999998864
No 164
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.81 E-value=0.0083 Score=46.91 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.2
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..|+|+|..|.|||||.|.+.
T Consensus 54 e~vGiiG~NGaGKSTLlklia 74 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIA 74 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 489999999999999999875
No 165
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.81 E-value=0.013 Score=44.42 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=27.6
Q ss_pred echhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 181 G~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
|.++-++.|.+.+. .-..+.++|..|+|||||...+.+.
T Consensus 112 gi~eL~~~l~~~l~--------~~~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 112 GVEELINAIKKLAK--------KGGDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred CHHHHHHHHHHHhh--------cCCcEEEEcCCCCCHHHHHHHHHHh
Confidence 44544555555442 1256889999999999999988763
No 166
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=95.81 E-value=0.018 Score=47.05 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.1
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.....|.|+|.+|+||||+...+...
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~ 61 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGE 61 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCC
Confidence 44567889999999999999998764
No 167
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.0085 Score=51.13 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.4
Q ss_pred CCEEEEEecCCCCcHHHHHHHH
Q 037814 203 GPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
+-.+|++||..|+||||++..+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakL 211 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKL 211 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999865
No 168
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.80 E-value=0.008 Score=48.33 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+.-
T Consensus 39 e~~~i~G~nGsGKSTLl~~l~G 60 (268)
T PRK10419 39 ETVALLGRSGCGKSTLARLLVG 60 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999864
No 169
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.77 E-value=0.0082 Score=48.75 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=20.1
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=.+++|+|..|+|||||++.+.
T Consensus 65 Ge~~~I~G~nGsGKSTLl~~l~ 86 (285)
T PRK14254 65 NQVTAMIGPSGCGKSTFLRCIN 86 (285)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3699999999999999999985
No 170
>PF13245 AAA_19: Part of AAA domain
Probab=95.77 E-value=0.0099 Score=38.06 Aligned_cols=20 Identities=40% Similarity=0.464 Sum_probs=15.6
Q ss_pred EEEEEecCCCCcHH-HHHHHH
Q 037814 205 RIISLVGMGGIGKT-TLAQFA 224 (229)
Q Consensus 205 ~Vi~IvG~gGvGKT-TLa~~v 224 (229)
.++.|.|.+|.||| |+++.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARI 31 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 57888999999999 444443
No 171
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.75 E-value=0.0087 Score=49.11 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|.|||||++.+..
T Consensus 71 Ge~~~IvG~nGsGKSTLl~~L~G 93 (305)
T PRK14264 71 KSVTALIGPSGCGKSTFLRCLNR 93 (305)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35999999999999999999863
No 172
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=95.75 E-value=0.019 Score=48.70 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=19.6
Q ss_pred CCCEEEEEecC-CCCcHHHHHHHH
Q 037814 202 KGPRIISLVGM-GGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG~-gGvGKTTLa~~v 224 (229)
...+||+|+.. ||+||||++-.+
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nL 127 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHL 127 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHH
Confidence 45899999998 999999987653
No 173
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=95.73 E-value=0.0081 Score=51.18 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=20.7
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..--||+|+|..|+||||+++.+-
T Consensus 365 ~~gEvigilGpNgiGKTTFvk~LA 388 (591)
T COG1245 365 YDGEVIGILGPNGIGKTTFVKLLA 388 (591)
T ss_pred ecceEEEEECCCCcchHHHHHHHh
Confidence 345799999999999999999864
No 174
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=95.70 E-value=0.0093 Score=48.30 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||.+.+..
T Consensus 37 e~~~l~G~nGsGKSTLl~~l~G 58 (280)
T PRK13633 37 EFLVILGRNGSGKSTIAKHMNA 58 (280)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999864
No 175
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.70 E-value=0.013 Score=51.55 Aligned_cols=49 Identities=29% Similarity=0.263 Sum_probs=35.9
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
++.-=..-+++|..||...-. .....+++-+.|.+|+||||.++.+.++
T Consensus 20 eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 344445567889999975322 1234569999999999999999988754
No 176
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.70 E-value=0.021 Score=48.99 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=19.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHH
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+..||.++|..|+||||.+-.+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakL 119 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKL 119 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHH
Confidence 34689999999999999996554
No 177
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.69 E-value=0.016 Score=47.64 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=21.4
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..-..|.|+|+.|+||||+++.+..
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~ 155 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAA 155 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999754
No 178
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.67 E-value=0.015 Score=51.09 Aligned_cols=51 Identities=31% Similarity=0.357 Sum_probs=33.5
Q ss_pred CcceechhhHHHHHHHhh---cCCC---CCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLL---CESS---EERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~---~~~~---~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+++|.+..+++|.+++. .... ......+=+-++|.+|+|||+||+.+.+.
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 468898888777766543 1100 00012234779999999999999998653
No 179
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.67 E-value=0.0086 Score=52.69 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=20.4
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.++.
T Consensus 289 e~~~l~G~NGsGKSTLlk~i~G 310 (506)
T PRK13549 289 EILGIAGLVGAGRTELVQCLFG 310 (506)
T ss_pred cEEEEeCCCCCCHHHHHHHHhC
Confidence 5999999999999999999874
No 180
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.66 E-value=0.0087 Score=54.50 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=..|+|||-.|+|||||+|.+-
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~ 520 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLL 520 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999863
No 181
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.65 E-value=0.019 Score=53.64 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=36.4
Q ss_pred cceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|.+..++.|...+.... ......+.++-++|..|+||||||+.+.+
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 58899998888887775321 00113456888999999999999998764
No 182
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.65 E-value=0.024 Score=48.98 Aligned_cols=49 Identities=24% Similarity=0.125 Sum_probs=30.3
Q ss_pred cceechhhH--HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEK--NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~--~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-++|-.+.. ..+.++.............-+-|+|..|+|||+|++.+.+
T Consensus 113 Fv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~ 163 (445)
T PRK12422 113 FLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVH 163 (445)
T ss_pred eeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 456765553 3444444221100112345678999999999999999876
No 183
>PRK06526 transposase; Provisional
Probab=95.65 E-value=0.0086 Score=47.77 Aligned_cols=22 Identities=32% Similarity=0.235 Sum_probs=18.8
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-+-|+|.+|+|||+||..+-+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHH
Confidence 4578999999999999998743
No 184
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=95.65 E-value=0.01 Score=46.41 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.-..|+|..|.|||||.+.+.-+
T Consensus 58 e~W~I~G~NGsGKTTLL~ll~~~ 80 (257)
T COG1119 58 EHWAIVGPNGAGKTTLLSLLTGE 80 (257)
T ss_pred CcEEEECCCCCCHHHHHHHHhcc
Confidence 35789999999999999998654
No 185
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.65 E-value=0.01 Score=45.28 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||.+.+..
T Consensus 36 e~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6999999999999999998764
No 186
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.012 Score=49.49 Aligned_cols=24 Identities=46% Similarity=0.527 Sum_probs=20.8
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+-.+|.|+|..|+||||++..+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999988764
No 187
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.65 E-value=0.017 Score=47.90 Aligned_cols=40 Identities=30% Similarity=0.318 Sum_probs=31.9
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.++|.+.....+...+..+. -+-+.|.+|+|||+||+.+-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA 64 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALA 64 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHH
Confidence 37888888887777776553 56789999999999999874
No 188
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.64 E-value=0.019 Score=52.80 Aligned_cols=49 Identities=27% Similarity=0.395 Sum_probs=36.0
Q ss_pred cceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|.+..++.|...+.... .+......++-++|..|+|||+||+.+..
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~ 506 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE 506 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH
Confidence 57888888888887775321 00123466789999999999999998753
No 189
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=95.64 E-value=0.0093 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 36 e~~~iiG~nGsGKSTLl~~i~G 57 (529)
T PRK15134 36 ETLALVGESGSGKSVTALSILR 57 (529)
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999998753
No 190
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.63 E-value=0.018 Score=49.88 Aligned_cols=43 Identities=35% Similarity=0.454 Sum_probs=35.4
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+++|-+..++.|..++..+.- ...+-++|..|+||||+|+.+
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i-----~ha~Lf~Gp~G~GKtt~A~~l 59 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRA-----AHAYLFSGIRGTGKTTLARIF 59 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----ceEEEEEcCCCCCHHHHHHHH
Confidence 3689999999999999865432 356778999999999999876
No 191
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.61 E-value=0.012 Score=42.35 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=20.2
Q ss_pred EEEEecCCCCcHHHHHHHHhcCC
Q 037814 206 IISLVGMGGIGKTTLAQFAYNND 228 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~vy~d~ 228 (229)
.+.++|..|+|||||...+..+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~ 107 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKK 107 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887653
No 192
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=95.61 E-value=0.0098 Score=52.38 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||.+.+..
T Consensus 38 e~~~liG~NGsGKSTLl~~l~G 59 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMKIIAG 59 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6999999999999999999864
No 193
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.60 E-value=0.011 Score=49.36 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||.+.+..
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~G 89 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMILG 89 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 6999999999999999998864
No 194
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.60 E-value=0.028 Score=48.76 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=29.9
Q ss_pred cceechhh--HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 178 EIFGREKE--KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 178 ~~vG~~~~--~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
-++|..+. ...+..+..+.. ....-+-|+|..|+|||+|++.+.+.
T Consensus 124 fv~g~~n~~a~~~~~~~~~~~~----~~~~~l~l~G~~G~GKThL~~ai~~~ 171 (450)
T PRK00149 124 FVVGKSNRLAHAAALAVAENPG----KAYNPLFIYGGVGLGKTHLLHAIGNY 171 (450)
T ss_pred cccCCCcHHHHHHHHHHHhCcC----ccCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35665443 344444443221 23456889999999999999998763
No 195
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.60 E-value=0.019 Score=47.19 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-..|.|+|..|+|||||++.+..
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~ 166 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVD 166 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999998764
No 196
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.60 E-value=0.012 Score=49.43 Aligned_cols=39 Identities=36% Similarity=0.520 Sum_probs=25.8
Q ss_pred hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHH-HHHH
Q 037814 183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTT-LAQF 223 (229)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTT-La~~ 223 (229)
.+-...+..|+..+-. -.+-+||++||..|||||| ||+.
T Consensus 184 ~~~l~~~~~~~~~~~~--~~~~~vi~LVGPTGVGKTTTlAKL 223 (407)
T COG1419 184 SEKLRKLLLSLIENLI--VEQKRVIALVGPTGVGKTTTLAKL 223 (407)
T ss_pred HHHHHHHHHhhccccc--cccCcEEEEECCCCCcHHHHHHHH
Confidence 4445566666654410 0236999999999999986 5554
No 197
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=95.59 E-value=0.0098 Score=53.72 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 43 e~~~lvG~nGsGKSTLl~~l~G 64 (623)
T PRK10261 43 ETLAIVGESGSGKSVTALALMR 64 (623)
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 6999999999999999999864
No 198
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.59 E-value=0.01 Score=50.57 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||.+.+..
T Consensus 55 ei~~LvG~NGsGKSTLLr~I~G 76 (400)
T PRK10070 55 EIFVIMGLSGSGKSTMVRLLNR 76 (400)
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 5999999999999999999864
No 199
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.57 E-value=0.011 Score=49.02 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..|+|+|..|+|||||++.+-+
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~ 184 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAA 184 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999998754
No 200
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.021 Score=49.95 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=35.4
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+++|-+.-+..|..++..+.. ...+-++|..|+||||+|+.+.
T Consensus 17 diiGq~~i~~~L~~~i~~~~i-----~hayLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQRV-----SHAYIFAGPRGTGKTTIARILA 59 (486)
T ss_pred HccChHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999976542 3556789999999999998864
No 201
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.56 E-value=0.018 Score=53.40 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=35.7
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+|+|-+..++.|..+|..+.- -..+-++|..|+||||+|+.+-
T Consensus 16 eiiGqe~v~~~L~~~i~~~ri-----~Ha~Lf~Gp~G~GKTt~A~~lA 58 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGRI-----NHAYLFSGPRGCGKTSSARILA 58 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCCC-----CceEEEECCCCCCHHHHHHHHH
Confidence 689999999999999876542 3567899999999999998763
No 202
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=95.56 E-value=0.0096 Score=52.19 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=20.7
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|+|||||.+.++-
T Consensus 274 Ge~~~l~G~nGsGKSTLl~~l~G 296 (491)
T PRK10982 274 GEILGIAGLVGAKRTDIVETLFG 296 (491)
T ss_pred CcEEEEecCCCCCHHHHHHHHcC
Confidence 36999999999999999999864
No 203
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=95.55 E-value=0.01 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|+|||||++.+..
T Consensus 289 Ge~~~l~G~NGsGKSTLlk~i~G 311 (510)
T PRK09700 289 GEILGFAGLVGSGRTELMNCLFG 311 (510)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999864
No 204
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.54 E-value=0.012 Score=47.02 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~G 69 (257)
T cd03288 48 QKVGICGRTGSGKSSLSLAFFR 69 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5999999999999999998864
No 205
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.54 E-value=0.01 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.5
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+=..++|||..|+|||||++.+.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34789999999999999999985
No 206
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.53 E-value=0.013 Score=52.56 Aligned_cols=49 Identities=29% Similarity=0.425 Sum_probs=35.9
Q ss_pred cceechhhHHHHHHHhhcCC----------------------------CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCES----------------------------SEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~----------------------------~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+++|-+..-..++.||.... ....+.-+|+-++|.+|+||||||+.|-+
T Consensus 272 dLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAk 348 (877)
T KOG1969|consen 272 DLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAK 348 (877)
T ss_pred HHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHH
Confidence 46777777777777774321 00246689999999999999999998754
No 207
>PRK12288 GTPase RsgA; Reviewed
Probab=95.53 E-value=0.016 Score=48.41 Aligned_cols=34 Identities=32% Similarity=0.422 Sum_probs=26.9
Q ss_pred hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.++.|.++|.. .++.++|..|||||||...+-.+
T Consensus 195 GideL~~~L~~---------ki~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 195 GLEELEAALTG---------RISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred CHHHHHHHHhh---------CCEEEECCCCCCHHHHHHHhccc
Confidence 46777777752 35789999999999999988654
No 208
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.52 E-value=0.022 Score=45.71 Aligned_cols=40 Identities=35% Similarity=0.403 Sum_probs=27.5
Q ss_pred eechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 180 FGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 180 vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.|...+.-+.+..+.... -.+|.|.|..|+||||+++.+.
T Consensus 62 lg~~~~~~~~l~~~~~~~------~GlilisG~tGSGKTT~l~all 101 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP------HGIILVTGPTGSGKTTTLYSAL 101 (264)
T ss_pred cCCCHHHHHHHHHHHhcC------CCEEEEECCCCCcHHHHHHHHH
Confidence 565554444444444332 3689999999999999998663
No 209
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=95.51 E-value=0.018 Score=45.66 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=26.5
Q ss_pred hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..+++.+.|.. +++.++|+.|+||+||...+..+
T Consensus 110 gi~eLf~~l~~---------~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 110 GLKELIEALQN---------RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred hHHHHHhhhcC---------CEEEEECCCCCCHHHHHHHHhhh
Confidence 36667776642 47889999999999999987654
No 210
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.50 E-value=0.016 Score=52.12 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=32.1
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
++++|.+..++.+...+.... .++ ++|..|+|||||++.+.+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~-------~~l-l~G~pG~GKT~la~~la~ 59 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR-------NVL-LIGEPGVGKSMLAKAMAE 59 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC-------CEE-EECCCCCCHHHHHHHHHH
Confidence 468899888887777665432 344 999999999999998753
No 211
>PRK12289 GTPase RsgA; Reviewed
Probab=95.49 E-value=0.017 Score=48.28 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=26.3
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+.|.++|.+ .++.|+|+.||||+||...+..+
T Consensus 163 I~eL~~~L~~---------ki~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 163 LEALLEQLRN---------KITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred HHHHhhhhcc---------ceEEEEeCCCCCHHHHHHHHcCc
Confidence 5677777642 36899999999999999998754
No 212
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.49 E-value=0.011 Score=52.25 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.++-
T Consensus 346 e~~~l~G~NGsGKSTLl~~i~G 367 (530)
T PRK15064 346 ERLAIIGENGVGKTTLLRTLVG 367 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5999999999999999999874
No 213
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.48 E-value=0.024 Score=47.40 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=35.6
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
..++|-+.....+...+..+. -..-+-|+|..|+||||||+.+
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~l 65 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHL 65 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHH
Confidence 468999999999999887554 2356889999999999999864
No 214
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=95.48 E-value=0.011 Score=52.11 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=20.8
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|+|||||++.+..
T Consensus 289 Ge~~~l~G~NGsGKSTLl~~i~G 311 (510)
T PRK15439 289 GEILGLAGVVGAGRTELAETLYG 311 (510)
T ss_pred CcEEEEECCCCCCHHHHHHHHcC
Confidence 36999999999999999999864
No 215
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.48 E-value=0.012 Score=46.95 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.6
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|+|..|.|||||.+.+.
T Consensus 37 e~~~i~G~nGsGKSTLl~~ia 57 (257)
T PRK14246 37 SIFGIMGPSGSGKSTLLKVLN 57 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 599999999999999999875
No 216
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.48 E-value=0.023 Score=45.06 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=26.4
Q ss_pred hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+..+.++..+.. .+...+-++|-+|+|||+|+..+.+
T Consensus 84 al~~a~~~~~~~~----~~~~~~~l~G~~GtGKThLa~aia~ 121 (244)
T PRK07952 84 ALSKARQYVEEFD----GNIASFIFSGKPGTGKNHLAAAICN 121 (244)
T ss_pred HHHHHHHHHHhhc----cCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445555553322 2245788999999999999999875
No 217
>CHL00176 ftsH cell division protein; Validated
Probab=95.47 E-value=0.012 Score=53.13 Aligned_cols=51 Identities=31% Similarity=0.324 Sum_probs=33.8
Q ss_pred CcceechhhHHHHHHHh---hcCCC---CCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRL---LCESS---EERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L---~~~~~---~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.++.|.++.++.+.+++ ..... -.....+-|-++|.+|+|||+||+.+.+.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46889877777665554 22210 00122345889999999999999998753
No 218
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=95.47 E-value=0.012 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|+|||||++.++.
T Consensus 312 Ge~~~i~G~nGsGKSTLlk~l~G 334 (529)
T PRK15134 312 GETLGLVGESGSGKSTTGLALLR 334 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999864
No 219
>PRK13409 putative ATPase RIL; Provisional
Probab=95.47 E-value=0.012 Score=52.80 Aligned_cols=22 Identities=45% Similarity=0.742 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~G 387 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAG 387 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5999999999999999999864
No 220
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.47 E-value=0.012 Score=44.26 Aligned_cols=20 Identities=35% Similarity=0.710 Sum_probs=18.7
Q ss_pred EEEEEecCCCCcHHHHHHHH
Q 037814 205 RIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~v 224 (229)
..++|.|-.|+||+|||+.+
T Consensus 40 QTlaiIG~NGSGKSTLakMl 59 (267)
T COG4167 40 QTLAIIGENGSGKSTLAKML 59 (267)
T ss_pred cEEEEEccCCCcHhHHHHHH
Confidence 58999999999999999986
No 221
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.47 E-value=0.013 Score=48.96 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=23.5
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
+....+.|||..|+|||.+|+.|++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 55789999999999999999999874
No 222
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.47 E-value=0.022 Score=46.01 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=25.5
Q ss_pred HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 187 NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 187 ~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+|+..|.... .+..||+|-|.+|+||+||.-.+
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L 71 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEAL 71 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHH
Confidence 45555555443 55789999999999999998654
No 223
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.47 E-value=0.021 Score=44.88 Aligned_cols=47 Identities=28% Similarity=0.390 Sum_probs=35.0
Q ss_pred CCCCcceechhhHHHHHH----HhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 174 IDESEIFGREKEKNELVN----RLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 174 ~~~~~~vG~~~~~~~l~~----~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+.-++++|.+.+++.|++ +|.+. ...-+-+||..|.|||+|++.+.+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~------pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGL------PANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCC------CCcceEEecCCCCCHHHHHHHHHH
Confidence 344579999999998865 33322 234556799999999999999865
No 224
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.45 E-value=0.012 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||.+.++.
T Consensus 351 e~~~l~G~NGsGKSTLl~~i~G 372 (556)
T PRK11819 351 GIVGIIGPNGAGKSTLFKMITG 372 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999874
No 225
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.45 E-value=0.02 Score=44.73 Aligned_cols=41 Identities=24% Similarity=0.201 Sum_probs=32.9
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHH
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQF 223 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~ 223 (229)
.++||-++.++.+.-+-.+++ ..-+-|-||+|+||||=+..
T Consensus 27 ~dIVGNe~tv~rl~via~~gn------mP~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN------MPNLIISGPPGTGKTTSILC 67 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCceEeeCCCCCchhhHHHH
Confidence 368999999999887776654 56677999999999995543
No 226
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=95.44 E-value=0.02 Score=46.55 Aligned_cols=32 Identities=34% Similarity=0.422 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+.|..+|.. .+++++|..|+|||||++.+..
T Consensus 152 i~~L~~~L~~---------k~~~~~G~sg~GKSTlin~l~~ 183 (287)
T cd01854 152 LDELREYLKG---------KTSVLVGQSGVGKSTLINALLP 183 (287)
T ss_pred HHHHHhhhcc---------ceEEEECCCCCCHHHHHHHHhc
Confidence 4566666642 5899999999999999998754
No 227
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.44 E-value=0.011 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.1
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..+|+|.|..|+||||+++.+.+
T Consensus 284 ~~ii~i~G~sgsGKst~a~~la~ 306 (512)
T PRK13477 284 QPIIAIDGPAGAGKSTVTRAVAK 306 (512)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999999875
No 228
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.43 E-value=0.025 Score=50.15 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=38.1
Q ss_pred CCCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 174 IDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 174 ~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.....++|....+.++++.+..-. ..-.-|-|+|-.|+|||++|+.|++.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHh
Confidence 344579999999999888775432 11234569999999999999999863
No 229
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=95.43 E-value=0.012 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|+|||||++.+..
T Consensus 350 Ge~~~lvG~nGsGKSTLlk~i~G 372 (623)
T PRK10261 350 GETLSLVGESGSGKSTTGRALLR 372 (623)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35999999999999999999863
No 230
>PRK13409 putative ATPase RIL; Provisional
Probab=95.42 E-value=0.012 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|+|||||++.+..
T Consensus 99 Gev~gLvG~NGaGKSTLlkiL~G 121 (590)
T PRK13409 99 GKVTGILGPNGIGKTTAVKILSG 121 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36999999999999999998754
No 231
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.42 E-value=0.013 Score=48.55 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.++.
T Consensus 109 e~v~IvG~~GsGKSTLl~~L~g 130 (329)
T PRK14257 109 KVTAFIGPSGCGKSTFLRNLNQ 130 (329)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999875
No 232
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.015 Score=49.13 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=19.2
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..+|.+||..|+||||.+..+-
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA 195 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLA 195 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5799999999999999887653
No 233
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=95.40 E-value=0.012 Score=51.65 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||.+.++-
T Consensus 279 e~~~liG~NGsGKSTLl~~l~G 300 (501)
T PRK10762 279 EILGVSGLMGAGRTELMKVLYG 300 (501)
T ss_pred cEEEEecCCCCCHHHHHHHHhC
Confidence 5899999999999999999864
No 234
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.40 E-value=0.012 Score=53.18 Aligned_cols=23 Identities=39% Similarity=0.600 Sum_probs=20.7
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+++|+|..|+|||||.+.++..
T Consensus 346 e~~~l~G~NGsGKSTLlk~l~G~ 368 (635)
T PRK11147 346 DKIALIGPNGCGKTTLLKLMLGQ 368 (635)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998753
No 235
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.38 E-value=0.018 Score=51.39 Aligned_cols=36 Identities=33% Similarity=0.614 Sum_probs=28.3
Q ss_pred hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHH-HHHHHhcC
Q 037814 184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTT-LAQFAYNN 227 (229)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTT-La~~vy~d 227 (229)
.-+++|++.+.+. .||-|||-.|+|||| |+|.+|.|
T Consensus 359 ~~R~~ll~~ir~n--------~vvvivgETGSGKTTQl~QyL~ed 395 (1042)
T KOG0924|consen 359 ACRDQLLSVIREN--------QVVVIVGETGSGKTTQLAQYLYED 395 (1042)
T ss_pred HHHHHHHHHHhhC--------cEEEEEecCCCCchhhhHHHHHhc
Confidence 3455777776544 599999999999998 78888876
No 236
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=95.38 E-value=0.012 Score=51.68 Aligned_cols=22 Identities=32% Similarity=0.733 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||.+.+..
T Consensus 280 e~~~iiG~NGsGKSTLlk~l~G 301 (501)
T PRK11288 280 EIVGLFGLVGAGRSELMKLLYG 301 (501)
T ss_pred cEEEEEcCCCCCHHHHHHHHcC
Confidence 5899999999999999999864
No 237
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=95.38 E-value=0.032 Score=47.68 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=28.8
Q ss_pred hhhHHHHHHHhhc--C---------CCCCCCCCEEEEEecC-CCCcHHHHHHHH
Q 037814 183 EKEKNELVNRLLC--E---------SSEERKGPRIISLVGM-GGIGKTTLAQFA 224 (229)
Q Consensus 183 ~~~~~~l~~~L~~--~---------~~~~~~~~~Vi~IvG~-gGvGKTTLa~~v 224 (229)
.+++.++.++|.. . .-....+.+||+|+.. ||+||||++-.+
T Consensus 89 ~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta~nL 142 (405)
T PRK13869 89 LGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTSAHL 142 (405)
T ss_pred HHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHHHHH
Confidence 4577777777753 0 0001245799999987 999999987653
No 238
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.38 E-value=0.022 Score=47.80 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.9
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-..|.|+|..|+||||+++.+.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl 155 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAII 155 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3799999999999999999875
No 239
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=95.37 E-value=0.013 Score=52.23 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.++.
T Consensus 349 e~~~l~G~NGsGKSTLl~~l~G 370 (552)
T TIGR03719 349 GIVGVIGPNGAGKSTLFRMITG 370 (552)
T ss_pred CEEEEECCCCCCHHHHHHHHcC
Confidence 5999999999999999999864
No 240
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.36 E-value=0.011 Score=42.42 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=28.2
Q ss_pred eechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 180 FGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 180 vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
||.-..++++.+-+..-. ..-.-|-|.|-.|+||+++|+.+++.
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 355555566655554321 12245689999999999999998864
No 241
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.35 E-value=0.017 Score=47.04 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-+|.|.|..|+||||+|+.+.+
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~ 114 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELAS 114 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998864
No 242
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=95.35 E-value=0.014 Score=51.62 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 311 e~~~l~G~NGsGKSTLl~~l~G 332 (520)
T TIGR03269 311 EIFGIVGTSGAGKTTLSKIIAG 332 (520)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999864
No 243
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.34 E-value=0.03 Score=51.52 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=35.6
Q ss_pred cceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 178 EIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.++|-+..++.|.+.+.... ....+.+..+-++|..|+|||+||+.+-
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA 509 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLS 509 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHH
Confidence 47898888888888775321 1112446788999999999999999764
No 244
>PRK12377 putative replication protein; Provisional
Probab=95.32 E-value=0.02 Score=45.51 Aligned_cols=24 Identities=29% Similarity=0.247 Sum_probs=20.8
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..-+-++|..|+|||+||..+.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~ 124 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR 124 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999998763
No 245
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.32 E-value=0.014 Score=52.93 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.4
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||.+.+..
T Consensus 339 e~~~l~G~NGsGKSTLlk~l~G 360 (638)
T PRK10636 339 SRIGLLGRNGAGKSTLIKLLAG 360 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6999999999999999999864
No 246
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.30 E-value=0.013 Score=51.60 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-|+|+|..|+|||||.+.+..
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g 370 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAG 370 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5799999999999999998843
No 247
>PRK15494 era GTPase Era; Provisional
Probab=95.30 E-value=0.02 Score=47.75 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
...-|+|+|.+|+|||||...+...
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 3467899999999999999987653
No 248
>PRK03003 GTP-binding protein Der; Reviewed
Probab=95.30 E-value=0.025 Score=49.32 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.....|+|||.+|+|||||...+...
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~ 61 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGR 61 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCc
Confidence 44678999999999999999887653
No 249
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=95.29 E-value=0.036 Score=47.06 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=19.1
Q ss_pred CCCEEEEEecC-CCCcHHHHHHHH
Q 037814 202 KGPRIISLVGM-GGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG~-gGvGKTTLa~~v 224 (229)
+..+||+|.+. ||+||||+|-.+
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nL 125 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHL 125 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHH
Confidence 55789999976 999999988654
No 250
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.29 E-value=0.038 Score=41.34 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..-.++++|++++||+||...+.+.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~ 140 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRS 140 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCc
Confidence 3457899999999999999988654
No 251
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.29 E-value=0.026 Score=46.14 Aligned_cols=22 Identities=45% Similarity=0.484 Sum_probs=18.7
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-|-|+|..|+|||||++.+.+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~ 154 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLA 154 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3456999999999999998864
No 252
>PRK01889 GTPase RsgA; Reviewed
Probab=95.29 E-value=0.027 Score=47.28 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=28.3
Q ss_pred hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..++.|..+|..+ .+++|+|..|+|||||.+.+..
T Consensus 183 ~gl~~L~~~L~~g--------~~~~lvG~sgvGKStLin~L~g 217 (356)
T PRK01889 183 EGLDVLAAWLSGG--------KTVALLGSSGVGKSTLVNALLG 217 (356)
T ss_pred ccHHHHHHHhhcC--------CEEEEECCCCccHHHHHHHHHH
Confidence 3477888888433 4899999999999999998764
No 253
>PLN03073 ABC transporter F family; Provisional
Probab=95.28 E-value=0.014 Score=53.53 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..++|+|..|+|||||.+.+..
T Consensus 204 e~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 204 RHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred CEEEEECCCCCCHHHHHHHHcC
Confidence 5799999999999999999863
No 254
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=95.28 E-value=0.014 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|+|||||.+.+..
T Consensus 286 Ge~~~l~G~NGsGKSTLl~~l~G 308 (500)
T TIGR02633 286 GEILGVAGLVGAGRTELVQALFG 308 (500)
T ss_pred CcEEEEeCCCCCCHHHHHHHHhC
Confidence 36999999999999999999864
No 255
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.27 E-value=0.03 Score=47.84 Aligned_cols=49 Identities=29% Similarity=0.302 Sum_probs=33.0
Q ss_pred cceechhhHHHHHHHhhc-------CCC---CCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLC-------ESS---EERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~-------~~~---~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|.+..++.|...+.+ ... +-.....-|-++|..|+||||||+.+.+
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 589999988877544421 100 0001235688999999999999998753
No 256
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.26 E-value=0.016 Score=48.96 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.0
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||.+.|.-
T Consensus 41 e~~~LlGpsGsGKSTLLr~IaG 62 (375)
T PRK09452 41 EFLTLLGPSGCGKTTVLRLIAG 62 (375)
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5999999999999999998863
No 257
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=95.26 E-value=0.038 Score=46.89 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=26.3
Q ss_pred hHHHHHHHhhcCCC-CCCCCCEEEEEecC-CCCcHHHHHHHH
Q 037814 185 EKNELVNRLLCESS-EERKGPRIISLVGM-GGIGKTTLAQFA 224 (229)
Q Consensus 185 ~~~~l~~~L~~~~~-~~~~~~~Vi~IvG~-gGvGKTTLa~~v 224 (229)
+..++.+.+..... ...++..||+|... |||||||++-.+
T Consensus 86 eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nL 127 (387)
T PHA02519 86 QISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHT 127 (387)
T ss_pred HHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHH
Confidence 45556655532210 01255899999998 999999988654
No 258
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.25 E-value=0.034 Score=51.95 Aligned_cols=48 Identities=25% Similarity=0.409 Sum_probs=36.4
Q ss_pred CcceechhhHHHHHHHhhcC---CCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 177 SEIFGREKEKNELVNRLLCE---SSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~---~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
..++|.+..++.|.+.+... -......+.++-++|..|+|||.||+.+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~L 616 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALAL 616 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHH
Confidence 36899999999998887432 1111256778999999999999999754
No 259
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.24 E-value=0.015 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|.|||||++.+..
T Consensus 286 Ge~~~i~G~NGsGKSTLl~~l~G 308 (490)
T PRK10938 286 GEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 35899999999999999999864
No 260
>PRK10646 ADP-binding protein; Provisional
Probab=95.21 E-value=0.038 Score=40.38 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.2
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-.||...|-=|+|||||+|.+..
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~ 50 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQ 50 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35999999999999999998753
No 261
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.19 E-value=0.031 Score=50.02 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=35.8
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|-+.-++.|..++..+.. ...+-++|..|+||||+|+.+.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~-----~hayLf~Gp~G~GKtt~A~~la 59 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRV-----AHAFLFTGARGVGKTSTARILA 59 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999875532 3566789999999999998764
No 262
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=95.19 E-value=0.049 Score=39.80 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=28.8
Q ss_pred echhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 181 G~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
|.+.-++.|.+.+-... . ...+.++|..|+|||||...+.+.
T Consensus 83 gi~~L~~~l~~~~~~~~----~-~~~~~~ig~~~~Gkssl~~~l~~~ 124 (156)
T cd01859 83 GTKILRRTIKELAKIDG----K-EGKVGVVGYPNVGKSSIINALKGR 124 (156)
T ss_pred cHHHHHHHHHHHHhhcC----C-CcEEEEECCCCCCHHHHHHHHhCC
Confidence 55555556655553322 3 344599999999999999988754
No 263
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.17 E-value=0.025 Score=46.91 Aligned_cols=36 Identities=36% Similarity=0.456 Sum_probs=30.0
Q ss_pred echhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHH
Q 037814 181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQ 222 (229)
Q Consensus 181 G~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~ 222 (229)
+|..+-..-+++|++++ +..|++.|.+|.|||-||-
T Consensus 228 prn~eQ~~ALdlLld~d------I~lV~L~G~AGtGKTlLAL 263 (436)
T COG1875 228 PRNAEQRVALDLLLDDD------IDLVSLGGKAGTGKTLLAL 263 (436)
T ss_pred cccHHHHHHHHHhcCCC------CCeEEeeccCCccHhHHHH
Confidence 36677777788888755 8999999999999999884
No 264
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.13 E-value=0.039 Score=47.08 Aligned_cols=49 Identities=31% Similarity=0.341 Sum_probs=33.1
Q ss_pred CcceechhhHHHHHHHhh-------cC-CCCCC----CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKNELVNRLL-------CE-SSEER----KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~-------~~-~~~~~----~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..++|.+..++.+...+. .. ..... .....|-++|..|+|||+||+.+-
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA 137 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLA 137 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHH
Confidence 358999988887755441 10 00000 123578899999999999999875
No 265
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.12 E-value=0.017 Score=49.83 Aligned_cols=20 Identities=35% Similarity=0.677 Sum_probs=18.7
Q ss_pred EEEEEecCCCCcHHHHHHHH
Q 037814 205 RIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+++|+|..|.|||||||.+
T Consensus 363 ~~lgIIGPSgSGKSTLaR~l 382 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLL 382 (580)
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 58999999999999999986
No 266
>PRK03003 GTP-binding protein Der; Reviewed
Probab=95.11 E-value=0.042 Score=47.97 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=33.7
Q ss_pred eechhhHHHHHHHhhcCCCC--CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 180 FGREKEKNELVNRLLCESSE--ERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 180 vG~~~~~~~l~~~L~~~~~~--~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.|.++-.+.|.+.+...... .......|+|+|-+|+|||||+..+.+.
T Consensus 185 ~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~ 234 (472)
T PRK03003 185 RGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGE 234 (472)
T ss_pred CCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCC
Confidence 35666677777766442111 1245678999999999999999988765
No 267
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.11 E-value=0.037 Score=46.60 Aligned_cols=42 Identities=26% Similarity=0.348 Sum_probs=34.7
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHH
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQF 223 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~ 223 (229)
.+++|-+..++.|.+.+..+.- ..-+-++|..|+||||||..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl-----~HA~Lf~Gp~G~GK~~lA~~ 60 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRL-----HHAWLIGGPQGIGKATLAYR 60 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCC-----CceEEEECCCCCCHHHHHHH
Confidence 4689999999999998876542 34688999999999999965
No 268
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.10 E-value=0.019 Score=48.54 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=19.6
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|+|..|+|||||.+.+.
T Consensus 46 e~~~llGpsGsGKSTLLr~Ia 66 (377)
T PRK11607 46 EIFALLGASGCGKSTLLRMLA 66 (377)
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 599999999999999999875
No 269
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.018 Score=46.95 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.2
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
-++|-+.|.+|.|||+|.+.++++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQk 200 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQK 200 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHh
Confidence 478899999999999999998764
No 270
>PRK08116 hypothetical protein; Validated
Probab=95.07 E-value=0.018 Score=46.37 Aligned_cols=22 Identities=41% Similarity=0.350 Sum_probs=19.8
Q ss_pred EEEEecCCCCcHHHHHHHHhcC
Q 037814 206 IISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
-+-++|-.|+|||+||..|++.
T Consensus 116 gl~l~G~~GtGKThLa~aia~~ 137 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANE 137 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 271
>PHA02244 ATPase-like protein
Probab=95.05 E-value=0.031 Score=46.80 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=26.1
Q ss_pred hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
......+..|+..+. -|-|+|..|+|||+||+.+.+
T Consensus 106 ~~~~~ri~r~l~~~~--------PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 106 HYETADIAKIVNANI--------PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred HHHHHHHHHHHhcCC--------CEEEECCCCCCHHHHHHHHHH
Confidence 445556666665432 356799999999999999864
No 272
>PLN03073 ABC transporter F family; Provisional
Probab=95.04 E-value=0.018 Score=52.71 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||.+.+..
T Consensus 536 e~i~LvG~NGsGKSTLLk~L~G 557 (718)
T PLN03073 536 SRIAMVGPNGIGKSTILKLISG 557 (718)
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5999999999999999999864
No 273
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.03 E-value=0.039 Score=50.65 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=34.2
Q ss_pred eechhhHHHHHHHhhcCCCCC----CCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814 180 FGREKEKNELVNRLLCESSEE----RKGPRIISLVGMGGIGKTTLAQFAYNND 228 (229)
Q Consensus 180 vG~~~~~~~l~~~L~~~~~~~----~~~~~Vi~IvG~gGvGKTTLa~~vy~d~ 228 (229)
.|.++-++.|.+.|....... ..+...|+|+|.+|+|||||...+.+++
T Consensus 422 ~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~ 474 (712)
T PRK09518 422 RGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEE 474 (712)
T ss_pred CCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 356666777777765432111 1345789999999999999999887653
No 274
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.01 E-value=0.027 Score=44.10 Aligned_cols=26 Identities=38% Similarity=0.603 Sum_probs=21.6
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
....+|+|+|..|+|||||++.+...
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~ 62 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34579999999999999999877643
No 275
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.00 E-value=0.039 Score=49.14 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=35.7
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+++|.+.-.+.|..++..+.. ...+-++|..|+||||+|+.+
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~-----~hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKI-----SHAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHH
Confidence 3689999999999999976542 356678999999999999875
No 276
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.97 E-value=0.022 Score=48.23 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 51 ei~~I~G~nGsGKSTLlr~L~G 72 (382)
T TIGR03415 51 EICVLMGLSGSGKSSLLRAVNG 72 (382)
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999864
No 277
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.96 E-value=0.038 Score=46.06 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-.-|-|+|..|+|||||++.+.+
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~ 184 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLIS 184 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHc
Confidence 36789999999999999998765
No 278
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.94 E-value=0.039 Score=50.20 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=35.3
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+++|-+.-++.|..++..+.- ...+-++|..|+||||+|+.+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl-----~HAYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKI-----SHAYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCcHHHHHHHH
Confidence 3689999999999999976532 356678999999999999876
No 279
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=0.032 Score=47.76 Aligned_cols=25 Identities=60% Similarity=1.047 Sum_probs=21.0
Q ss_pred CCCCEEEEEecCCCCcHHH-HHHHHh
Q 037814 201 RKGPRIISLVGMGGIGKTT-LAQFAY 225 (229)
Q Consensus 201 ~~~~~Vi~IvG~gGvGKTT-La~~vy 225 (229)
.....||++||-.||||+| ||+.-|
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIay 400 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAY 400 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHH
Confidence 3678999999999999965 777766
No 280
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=94.92 E-value=0.049 Score=43.49 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.9
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+..-||+|-|..|+||+|+|+.+.
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~ 103 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQ 103 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHH
Confidence 778999999999999999998764
No 281
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.92 E-value=0.043 Score=48.86 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=36.9
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|-+.-+..|..++..+.- ...+-++|..|+||||+|+.+-+
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i-----~hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKI-----ANAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999976532 45678999999999999988743
No 282
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.90 E-value=0.021 Score=51.17 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=19.7
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=..++|+|..|.|||||++.+.
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~ 390 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLT 390 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999875
No 283
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=94.89 E-value=0.029 Score=48.33 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.0
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
....+|.|+|.+|+||||+|..+.+
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~ 277 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAY 277 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999999998754
No 284
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.89 E-value=0.023 Score=49.89 Aligned_cols=22 Identities=32% Similarity=0.718 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|.|||||++.+..
T Consensus 51 EivgIiGpNGSGKSTLLkiLaG 72 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAG 72 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhC
Confidence 5999999999999999998764
No 285
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.88 E-value=0.059 Score=46.61 Aligned_cols=24 Identities=33% Similarity=0.249 Sum_probs=20.8
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..-+-|+|..|+|||+|++.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~ 153 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Confidence 445899999999999999998863
No 286
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=94.87 E-value=0.021 Score=52.20 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.9
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=..++|||..|+|||||++.+.
T Consensus 479 Ge~vaIvG~sGsGKSTLlklL~ 500 (686)
T TIGR03797 479 GEFVAIVGPSGSGKSTLLRLLL 500 (686)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999874
No 287
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=94.86 E-value=0.22 Score=43.26 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.6
Q ss_pred EEEEecCCCCcHHHHHHHHhcC
Q 037814 206 IISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.|+|+|..|+|||||...+...
T Consensus 217 kV~ivG~~nvGKSSLln~L~~~ 238 (449)
T PRK05291 217 KVVIAGRPNVGKSSLLNALLGE 238 (449)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999998764
No 288
>PRK06851 hypothetical protein; Provisional
Probab=94.84 E-value=0.43 Score=40.19 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=21.0
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-+++-|-|.+|+|||||++.|+.
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~ 236 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAK 236 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHH
Confidence 47899999999999999999875
No 289
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.83 E-value=0.043 Score=47.57 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..-+-|+|..|+|||+|++.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~ 163 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN 163 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH
Confidence 45688999999999999999876
No 290
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.81 E-value=0.024 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.7
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-..++|||..|+|||||++.+.
T Consensus 355 Ge~vaiVG~sGsGKSTl~~LL~ 376 (567)
T COG1132 355 GEKVAIVGPSGSGKSTLIKLLL 376 (567)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999874
No 291
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.79 E-value=0.077 Score=43.75 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=25.5
Q ss_pred hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
....|+.+|..+ +-|-|.|..|+||||||+.+-.
T Consensus 53 ~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~ 86 (327)
T TIGR01650 53 TTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA 86 (327)
T ss_pred HHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH
Confidence 345566666432 3588999999999999998743
No 292
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=94.78 E-value=0.073 Score=46.38 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=31.6
Q ss_pred eechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814 180 FGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNND 228 (229)
Q Consensus 180 vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~ 228 (229)
||.+..- .|..-|..+. +-=+-|++||..|+||+||.+.+|-|.
T Consensus 397 F~y~~~~-~iy~~l~fgi----d~~srvAlVGPNG~GKsTLlKl~~gdl 440 (614)
T KOG0927|consen 397 FGYSDNP-MIYKKLNFGI----DLDSRVALVGPNGAGKSTLLKLITGDL 440 (614)
T ss_pred cCCCCcc-hhhhhhhccc----CcccceeEecCCCCchhhhHHHHhhcc
Confidence 5555544 5655555443 223678999999999999999998763
No 293
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.77 E-value=0.051 Score=50.95 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=36.6
Q ss_pred cceechhhHHHHHHHhhcCCC---CCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 178 EIFGREKEKNELVNRLLCESS---EERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~---~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.++|.+..++.|...+..... +......++-++|..|+|||+||+.+-
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La 616 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALA 616 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 589999999999888864210 011345778899999999999999874
No 294
>PRK06921 hypothetical protein; Provisional
Probab=94.74 E-value=0.025 Score=45.44 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=20.8
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..-+-++|..|+|||+|+..|.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~ 140 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE 140 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467889999999999999998753
No 295
>PLN02199 shikimate kinase
Probab=94.74 E-value=0.026 Score=45.78 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=19.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+-|.++||.|+||||+++.+-+
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~ 124 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSK 124 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998754
No 296
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.73 E-value=0.043 Score=50.61 Aligned_cols=51 Identities=31% Similarity=0.328 Sum_probs=35.1
Q ss_pred CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.++.|.+..++.|.+.+...-.. .-...+-|-++|..|+|||+||+.+.+.
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45788888888887765421000 0122345788999999999999998754
No 297
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.73 E-value=0.036 Score=44.53 Aligned_cols=38 Identities=29% Similarity=0.305 Sum_probs=26.8
Q ss_pred hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..+.+.++|...- ..-..|.|.|..|+||||+++.+.+
T Consensus 112 ~~~~~~~~l~~~v----~~~~~ili~G~tGSGKTT~l~all~ 149 (270)
T PF00437_consen 112 IPEEIAEFLRSAV----RGRGNILISGPTGSGKTTLLNALLE 149 (270)
T ss_dssp CHHHHHHHHHHCH----HTTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHhhcc----ccceEEEEECCCccccchHHHHHhh
Confidence 3445555554331 2348999999999999999988653
No 298
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=94.72 E-value=0.064 Score=46.12 Aligned_cols=48 Identities=27% Similarity=0.431 Sum_probs=32.6
Q ss_pred echhhHHHHHHHhhcCCCC--CCCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814 181 GREKEKNELVNRLLCESSE--ERKGPRIISLVGMGGIGKTTLAQFAYNND 228 (229)
Q Consensus 181 G~~~~~~~l~~~L~~~~~~--~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~ 228 (229)
|.++-.+.+.+.|...... ...+.-.|+|+|.+|+|||||+..+..++
T Consensus 147 gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~ 196 (429)
T TIGR03594 147 GIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEE 196 (429)
T ss_pred ChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCC
Confidence 5566666777666432211 12334579999999999999999987643
No 299
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.71 E-value=0.045 Score=49.31 Aligned_cols=44 Identities=27% Similarity=0.358 Sum_probs=35.5
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|.+.-+..|..++..+.- ..-+-++|..|+||||+|+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl-----~~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRI-----APAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCC-----CceEEEECCCCCChHHHHHHHH
Confidence 3689999999999999876531 2456789999999999999874
No 300
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.70 E-value=0.053 Score=43.64 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=27.6
Q ss_pred hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..+.++..|... ....-++|+|..|.|||||.+.+..
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~ 133 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLAR 133 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhC
Confidence 455556666533 2357899999999999999998764
No 301
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.70 E-value=0.027 Score=51.50 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.4
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-.||++||..|+||||++.++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4799999999999999887764
No 302
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=94.67 E-value=0.026 Score=50.19 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=..++|+|..|.|||||++.+..
T Consensus 349 G~~~aivG~sGsGKSTL~~ll~g 371 (547)
T PRK10522 349 GELLFLIGGNGSGKSTLAMLLTG 371 (547)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999998853
No 303
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.65 E-value=0.044 Score=45.50 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=19.7
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-.-|.|+|..|+|||||++.+.+
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~ 182 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALR 182 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHh
Confidence 36799999999999999988653
No 304
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.64 E-value=0.03 Score=44.84 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=27.2
Q ss_pred hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
+.++|.+.+..+= +.-+++-|.|.+|+|||||+.++
T Consensus 21 ~~~~~~~~~~GGi----p~gs~~lI~G~pGtGKT~l~~qf 56 (259)
T TIGR03878 21 EEGKIVRKPLGGI----PAYSVINITGVSDTGKSLMVEQF 56 (259)
T ss_pred cccccccccCCCe----ECCcEEEEEcCCCCCHHHHHHHH
Confidence 3555655555443 55689999999999999999885
No 305
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.62 E-value=0.029 Score=42.21 Aligned_cols=22 Identities=41% Similarity=0.388 Sum_probs=18.6
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-+.++|..|+|||.||..+-+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~ 69 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIAN 69 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHH
Confidence 4689999999999999988754
No 306
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=94.61 E-value=0.022 Score=49.16 Aligned_cols=22 Identities=50% Similarity=0.635 Sum_probs=19.0
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+--++||..|+|||||.+.|-+
T Consensus 107 rRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 107 RRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred cccceeCCCCCcHHHHHHHHHh
Confidence 3458999999999999999865
No 307
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.60 E-value=0.038 Score=48.64 Aligned_cols=25 Identities=20% Similarity=0.386 Sum_probs=22.4
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
....+|.++|..|+||||+|+.+..
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~ 391 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQ 391 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999998764
No 308
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.59 E-value=0.055 Score=47.71 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=34.8
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+++|-+.-++.|..++..+.- ..++-++|..|+||||+|+.+
T Consensus 14 deiiGqe~v~~~L~~~I~~grl-----~hayLf~Gp~G~GKTt~Ar~L 56 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRL-----AHAYLFSGLRGSGKTSSARIF 56 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCC-----CeeEEEECCCCCcHHHHHHHH
Confidence 3689999899999998865432 356689999999999999864
No 309
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=94.59 E-value=0.037 Score=48.44 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=20.4
Q ss_pred CCCEEEEEecCCCCcHHHHHHHH
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
+..-+++|||.+|.|||||.+.+
T Consensus 67 PPPfIvavvGPpGtGKsTLirSl 89 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSL 89 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHH
Confidence 55778899999999999999875
No 310
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.56 E-value=0.059 Score=44.44 Aligned_cols=24 Identities=46% Similarity=0.481 Sum_probs=20.7
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+.=+++-|+|..|+||||||-++.
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~ 76 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAI 76 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 556899999999999999987753
No 311
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=94.55 E-value=0.031 Score=46.23 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.1
Q ss_pred CCCEEEEE--ecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISL--VGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~I--vG~gGvGKTTLa~~vy~ 226 (229)
.++.||+| ++.||.|||+++..+.+
T Consensus 47 ~~~pvIsVGNi~vGGtGKTP~v~~L~~ 73 (325)
T PRK00652 47 APVPVIVVGNITVGGTGKTPVVIALAE 73 (325)
T ss_pred CCCCEEEEcCeeCCCCChHHHHHHHHH
Confidence 34779999 99999999999987753
No 312
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.54 E-value=0.023 Score=45.62 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=20.6
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.-++|+|-.|+|||||++.+++.
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~ 92 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN 92 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH
Confidence 56899999999999999998864
No 313
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=94.54 E-value=0.12 Score=40.45 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=36.4
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-||+|.-.+++...++.... +. =|-|||..|+|||||...+|.
T Consensus 25 gyvGidtI~~Qm~~k~mk~GF----~F-NIMVVgqSglgkstlinTlf~ 68 (336)
T KOG1547|consen 25 GYVGIDTIIEQMRKKTMKTGF----DF-NIMVVGQSGLGKSTLINTLFK 68 (336)
T ss_pred ccccHHHHHHHHHHHHHhccC----ce-EEEEEecCCCCchhhHHHHHH
Confidence 469999999999999987663 23 456899999999999988775
No 314
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=94.54 E-value=0.029 Score=51.52 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=19.8
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=..++|+|..|+|||||++.+.
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~ 521 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLV 521 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999874
No 315
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=94.53 E-value=0.029 Score=51.55 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=20.9
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhc
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+=.+++|||..|.|||||++.+..
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~g 529 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQN 529 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999998753
No 316
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.51 E-value=0.057 Score=50.43 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=35.1
Q ss_pred CcceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 177 SEIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
..++|-+..++.|...+.... .+....+.++-++|..|+|||+||+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~L 559 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKAL 559 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHH
Confidence 458899999998887774221 111244567789999999999999875
No 317
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.03 Score=48.61 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.0
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-|+|+|..|+|||||+|.+..
T Consensus 365 EkvAIlG~SGsGKSTllqLl~~ 386 (573)
T COG4987 365 EKVAILGRSGSGKSTLLQLLAG 386 (573)
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999874
No 318
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.49 E-value=0.061 Score=44.40 Aligned_cols=24 Identities=46% Similarity=0.480 Sum_probs=21.0
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+.-+++-|+|.+|+||||||-+++
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~ 76 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAI 76 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 556799999999999999998865
No 319
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.48 E-value=0.029 Score=50.28 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=20.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=..++|||..|.|||||++.+..
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999998753
No 320
>PRK09866 hypothetical protein; Provisional
Probab=94.48 E-value=0.053 Score=48.53 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=31.1
Q ss_pred hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
......|.+.|..-. ..-.+++|+|..|.|||||++.++..
T Consensus 52 ~~ri~~L~~~L~Kv~----~~~~~valvG~sgaGKSTLiNaL~G~ 92 (741)
T PRK09866 52 AERHAMLNNELRKIS----RLEMVLAIVGTMKAGKSTTINAIVGT 92 (741)
T ss_pred HHHHHHHHHHHHHHh----ccceEEEEECCCCCCHHHHHHHHhCC
Confidence 555666666665443 33489999999999999999998753
No 321
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=94.46 E-value=0.031 Score=51.33 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.8
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=..|+|||..|+|||||++.+.
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~ 526 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVA 526 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999874
No 322
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.44 E-value=0.031 Score=46.30 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-+-++|..|+|||+||..|.+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~ 205 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK 205 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 5688999999999999998865
No 323
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=94.43 E-value=0.05 Score=41.94 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=17.9
Q ss_pred CCCEEEEEec-CCCCcHHHHHHH
Q 037814 202 KGPRIISLVG-MGGIGKTTLAQF 223 (229)
Q Consensus 202 ~~~~Vi~IvG-~gGvGKTTLa~~ 223 (229)
...++|+|+| -||+||||++-.
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~n 55 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAIN 55 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHH
Confidence 3468999997 699999997764
No 324
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.42 E-value=0.057 Score=48.36 Aligned_cols=44 Identities=27% Similarity=0.300 Sum_probs=34.6
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|-+..+..|..++..+. -...+-++|..|+||||+|+.+-
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHH
Confidence 368898888888888886543 13567789999999999998764
No 325
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.41 E-value=0.032 Score=49.98 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=..++|||..|.|||||++.+..
T Consensus 366 G~~~aivG~sGsGKSTL~~ll~g 388 (574)
T PRK11160 366 GEKVALLGRTGCGKSTLLQLLTR 388 (574)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998864
No 326
>PTZ00035 Rad51 protein; Provisional
Probab=94.41 E-value=0.061 Score=44.80 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=21.4
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+.-.++-|+|..|+|||||+..++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~ 139 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLC 139 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHH
Confidence 557899999999999999998875
No 327
>PRK08181 transposase; Validated
Probab=94.38 E-value=0.032 Score=44.90 Aligned_cols=21 Identities=33% Similarity=0.221 Sum_probs=18.6
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 037814 206 IISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-+-++|..|+|||.||..+.+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~ 128 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGL 128 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHH
Confidence 488999999999999998754
No 328
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.37 E-value=0.034 Score=49.43 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=..++|+|..|.|||||++.+..
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g 366 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVG 366 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999998753
No 329
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.37 E-value=0.034 Score=49.91 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.8
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=..++|+|..|.|||||++.+.
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~ 382 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQ 382 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999875
No 330
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.36 E-value=0.032 Score=47.53 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.1
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-+-|+|||..||||+||.+.+.-
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~G 635 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIG 635 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhc
Confidence 46899999999999999998753
No 331
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=94.35 E-value=0.033 Score=49.29 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=20.7
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhc
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+=..++|+|..|.|||||++.+..
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998753
No 332
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.35 E-value=0.034 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.7
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=..++|||..|.|||||++.+.
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~ 512 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLL 512 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999874
No 333
>PTZ00494 tuzin-like protein; Provisional
Probab=94.33 E-value=0.76 Score=39.75 Aligned_cols=49 Identities=27% Similarity=0.285 Sum_probs=38.6
Q ss_pred CCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 175 DESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 175 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
....++.|+.+-.-+.+.|..-.. ...+|+.+-|.-|.||++|.+..-.
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvr 417 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVR 417 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHH
Confidence 445688898888888887765443 5689999999999999999987543
No 334
>PHA02624 large T antigen; Provisional
Probab=94.32 E-value=0.081 Score=47.07 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=29.9
Q ss_pred hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+...+.+.++.+- ++-+++.++|..|.|||||+..+.+
T Consensus 415 ~~~~~~lk~~l~gi----PKk~~il~~GPpnTGKTtf~~sLl~ 453 (647)
T PHA02624 415 DVIYDILKLIVENV----PKRRYWLFKGPVNSGKTTLAAALLD 453 (647)
T ss_pred HHHHHHHHHHHhcC----CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555555555554 6678999999999999999998754
No 335
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.31 E-value=0.034 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.4
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=..++|+|..|.|||||++.+..
T Consensus 341 G~~~~ivG~sGsGKSTLl~ll~g 363 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQR 363 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998753
No 336
>COG1162 Predicted GTPases [General function prediction only]
Probab=94.30 E-value=0.056 Score=43.84 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=25.9
Q ss_pred hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
...+.|..+|.+ ++..++|..||||+||...+-
T Consensus 153 ~~~~~l~~~l~~---------~~svl~GqSGVGKSSLiN~L~ 185 (301)
T COG1162 153 DGLEELAELLAG---------KITVLLGQSGVGKSTLINALL 185 (301)
T ss_pred ccHHHHHHHhcC---------CeEEEECCCCCcHHHHHHhhC
Confidence 456777777742 478899999999999998763
No 337
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.30 E-value=0.079 Score=43.54 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.1
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+.-.|+-|+|.+|+|||||+-+++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~ 116 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLA 116 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 446899999999999999998875
No 338
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.26 E-value=0.04 Score=48.25 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|||..|+||||+++.+..
T Consensus 36 E~lgIvGESGsGKSt~a~~i~g 57 (539)
T COG1123 36 EILGIVGESGSGKSTLALALMG 57 (539)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 5999999999999999999864
No 339
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=94.24 E-value=0.036 Score=49.75 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.0
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=..++|+|..|.|||||++.+.
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~ 382 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQ 382 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHc
Confidence 4789999999999999999874
No 340
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.11 Score=43.03 Aligned_cols=52 Identities=25% Similarity=0.274 Sum_probs=36.8
Q ss_pred CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814 177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNND 228 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~ 228 (229)
.++=|.+...++|.+-..-.--+ .-+..+=|-.+|.+|.|||-||+.|-|..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 35678898888887764221100 12345667799999999999999998764
No 341
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.22 E-value=0.071 Score=44.02 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=19.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-|-|+|..|+|||||++.+.+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~ 170 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIIN 170 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5788899999999999998764
No 342
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.21 E-value=0.1 Score=46.61 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.8
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
...+-|+|-.|+|||.|++.|++.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~ 337 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHY 337 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999998873
No 343
>PRK05973 replicative DNA helicase; Provisional
Probab=94.18 E-value=0.065 Score=42.24 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=19.1
Q ss_pred CCEEEEEecCCCCcHHHHHHHH
Q 037814 203 GPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.-.++-|.|.+|+|||||+.++
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqf 84 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLEL 84 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHH
Confidence 3468899999999999999875
No 344
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.14 E-value=0.066 Score=44.74 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+|.|.|..|+||||+++.+.+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~ 144 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMID 144 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998654
No 345
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.09 E-value=0.066 Score=49.03 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=35.9
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..++|....+..+++.+..-. ..-.-|-|+|-.|+|||++|+.|++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 368999888888876665322 22346779999999999999999863
No 346
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=94.05 E-value=0.068 Score=39.09 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.-..++|+|..|+||+||...+...
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~ 123 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNK 123 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcc
Confidence 3567889999999999999988764
No 347
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=94.04 E-value=0.043 Score=48.94 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=..++|+|..|.|||||++.+..
T Consensus 368 G~~~aivG~sGsGKSTl~~ll~g 390 (555)
T TIGR01194 368 GDIVFIVGENGCGKSTLAKLFCG 390 (555)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999998853
No 348
>COG4240 Predicted kinase [General function prediction only]
Probab=94.02 E-value=0.056 Score=42.04 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.6
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
...-+++|.|.-|+|||||+-.||+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~ 72 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVR 72 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHH
Confidence 4578999999999999999999886
No 349
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.94 E-value=0.086 Score=47.50 Aligned_cols=43 Identities=26% Similarity=0.359 Sum_probs=35.4
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+++|-+.-++.|..++..+.- ...+-++|..|+||||+|+.+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l-----~hayLf~Gp~G~GKtt~A~~l 59 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKL-----AHAYLFCGPRGVGKTTCARIF 59 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-----CeeEEEECCCCCCHHHHHHHH
Confidence 3689999999999999876542 356789999999999999764
No 350
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=93.93 E-value=0.048 Score=49.66 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.4
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|+|||||++.+..
T Consensus 478 Ge~~~IvG~nGsGKSTLl~lL~G 500 (659)
T TIGR00954 478 GNHLLICGPNGCGKSSLFRILGE 500 (659)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999998764
No 351
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.19 Score=39.85 Aligned_cols=52 Identities=29% Similarity=0.330 Sum_probs=35.2
Q ss_pred CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814 177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNND 228 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~ 228 (229)
.++-|.+-.+++|.+...-.-.+ .-+..+=+-.+|.+|.|||-||+.|-|+.
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 45778887777776653211000 11334556799999999999999998874
No 352
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.90 E-value=0.053 Score=44.25 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=19.8
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+..|.|+.|+||+||++.++.
T Consensus 55 eIfViMGLSGSGKSTLvR~~Nr 76 (386)
T COG4175 55 EIFVIMGLSGSGKSTLVRLLNR 76 (386)
T ss_pred eEEEEEecCCCCHHHHHHHHhc
Confidence 5888999999999999999863
No 353
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=93.90 E-value=0.048 Score=48.69 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.7
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=..++|+|..|.|||||++.+.
T Consensus 358 G~~v~IvG~sGsGKSTLl~lL~ 379 (571)
T TIGR02203 358 GETVALVGRSGSGKSTLVNLIP 379 (571)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999874
No 354
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=93.90 E-value=0.048 Score=48.95 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=19.9
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=..++|+|..|.|||||++.+.
T Consensus 367 Ge~iaIvG~SGsGKSTLl~lL~ 388 (592)
T PRK10790 367 RGFVALVGHTGSGKSTLASLLM 388 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999875
No 355
>PRK00093 GTP-binding protein Der; Reviewed
Probab=93.87 E-value=0.11 Score=44.68 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=22.0
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
...-.|+|+|.+|+|||||+..+...
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~ 196 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGE 196 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999987654
No 356
>PRK09354 recA recombinase A; Provisional
Probab=93.87 E-value=0.099 Score=43.57 Aligned_cols=24 Identities=42% Similarity=0.469 Sum_probs=21.0
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+.=+++=|+|..|+|||||+-++.
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~ 81 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAI 81 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 556899999999999999998764
No 357
>PLN02772 guanylate kinase
Probab=93.86 E-value=0.06 Score=45.42 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.6
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
...++|.|+|..|+||+||++.+..+
T Consensus 133 ~~~k~iVlsGPSGvGKsTL~~~L~~~ 158 (398)
T PLN02772 133 NAEKPIVISGPSGVGKGTLISMLMKE 158 (398)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhhh
Confidence 35789999999999999999998653
No 358
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=93.84 E-value=0.052 Score=48.56 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.2
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=..++|+|..|.|||||++.+..
T Consensus 366 Ge~i~IvG~sGsGKSTLlklL~g 388 (576)
T TIGR02204 366 GETVALVGPSGAGKSTLFQLLLR 388 (576)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999998753
No 359
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.84 E-value=0.099 Score=43.15 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+.-.++-|+|.+|+|||+|+.++.
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~ 123 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLA 123 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHH
Confidence 456899999999999999998875
No 360
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.82 E-value=0.078 Score=47.83 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=33.2
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
++++|.+..++.|...+... ..+-|+|..|+||||||+.+.+
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~ 72 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAE 72 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHH
Confidence 35889888888887766533 2588999999999999998653
No 361
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.81 E-value=0.092 Score=43.11 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=30.5
Q ss_pred echhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 181 G~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
++........+|+..-.. .+..+-+-++|..|+|||.||..+.+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~ 179 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANE 179 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 444455556666653221 123456889999999999999998763
No 362
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.81 E-value=0.085 Score=43.55 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.5
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+.-.++-|+|.+|+|||||+..++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~ 117 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLA 117 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHH
Confidence 557899999999999999998875
No 363
>PLN03211 ABC transporter G-25; Provisional
Probab=93.79 E-value=0.055 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.7
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|.|||||.+.+..
T Consensus 94 Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 94 GEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999998864
No 364
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=93.79 E-value=0.17 Score=37.62 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=20.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
...+.++|..|+|||||...+.+.
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~ 138 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGK 138 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999988753
No 365
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.76 E-value=0.093 Score=46.29 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=37.8
Q ss_pred CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
...++|....+.++.+.+..-. ..-.-|-|+|-.|+|||++|+.|++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 3568999999988888876543 22346679999999999999999863
No 366
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.27 Score=43.96 Aligned_cols=51 Identities=31% Similarity=0.296 Sum_probs=34.6
Q ss_pred CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
+++-|.++-+.+|.+.....-.+ .-...+=|-.+|.+|+||||+|+.+-|.
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh
Confidence 35666887777776554432211 1134566779999999999999998653
No 367
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.68 E-value=0.081 Score=43.57 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=20.8
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+.-+|+-|+|..|+|||+|+.+++
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla 117 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLC 117 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHH
Confidence 456899999999999999998754
No 368
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.68 E-value=0.05 Score=43.45 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=20.0
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..=+.++|.+|+|||.||..+-|
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~ 127 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGN 127 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 46788999999999999988755
No 369
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.66 E-value=0.054 Score=45.45 Aligned_cols=36 Identities=25% Similarity=0.130 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..++++.|..-. .+ .-+.|+|-.|+|||||++.+.+
T Consensus 120 ~~RvID~l~PiG----kG-QR~LIvG~pGtGKTTLl~~la~ 155 (380)
T PRK12608 120 SMRVVDLVAPIG----KG-QRGLIVAPPRAGKTVLLQQIAA 155 (380)
T ss_pred hHhhhhheeecC----CC-ceEEEECCCCCCHHHHHHHHHH
Confidence 345777776432 22 3558999999999999998654
No 370
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=93.66 E-value=0.11 Score=43.27 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=26.9
Q ss_pred hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..+...++..+... -.-|.|.|..|.|||||++.+..
T Consensus 164 ~~~~~~~L~~~v~~-------~~~ili~G~tGsGKTTll~al~~ 200 (340)
T TIGR03819 164 PPGVARLLRAIVAA-------RLAFLISGGTGSGKTTLLSALLA 200 (340)
T ss_pred CHHHHHHHHHHHhC-------CCeEEEECCCCCCHHHHHHHHHc
Confidence 34445555555533 36899999999999999997754
No 371
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.64 E-value=0.37 Score=41.03 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=31.4
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
+-++|-.+....-...-....+ ......+=|||-.|+|||.|++.+.|.
T Consensus 88 nFv~g~~N~~A~aa~~~va~~~--g~~~nplfi~G~~GlGKTHLl~Aign~ 136 (408)
T COG0593 88 NFVVGPSNRLAYAAAKAVAENP--GGAYNPLFIYGGVGLGKTHLLQAIGNE 136 (408)
T ss_pred heeeCCchHHHHHHHHHHHhcc--CCcCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4466755444333222222211 134788999999999999999999863
No 372
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.63 E-value=0.049 Score=40.59 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=17.2
Q ss_pred EEEEEecCCCCcHHHHHHHH
Q 037814 205 RIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~v 224 (229)
--|+|||..|+||+||.-..
T Consensus 37 e~vaiVG~SGSGKSTLl~vl 56 (228)
T COG4181 37 ETVAIVGPSGSGKSTLLAVL 56 (228)
T ss_pred ceEEEEcCCCCcHHhHHHHH
Confidence 47999999999999997543
No 373
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=93.63 E-value=0.15 Score=37.03 Aligned_cols=38 Identities=32% Similarity=0.251 Sum_probs=26.2
Q ss_pred hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
++..++-+.|...- +.-.||.+-|-=|.|||||+|-+-
T Consensus 9 ~~t~~lg~~l~~~l----~~g~Vv~L~GdLGAGKTtf~rgi~ 46 (149)
T COG0802 9 EATLALGERLAEAL----KAGDVVLLSGDLGAGKTTLVRGIA 46 (149)
T ss_pred HHHHHHHHHHHhhC----CCCCEEEEEcCCcCChHHHHHHHH
Confidence 34444444443322 334799999999999999999763
No 374
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.60 E-value=0.069 Score=42.98 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=19.0
Q ss_pred CEEEEEecCCCCcHHHHHHHH
Q 037814 204 PRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~v 224 (229)
..+++++|.+|+||||+++.+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l 95 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKM 95 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHH
Confidence 479999999999999998876
No 375
>smart00350 MCM minichromosome maintenance proteins.
Probab=93.59 E-value=0.12 Score=45.65 Aligned_cols=49 Identities=24% Similarity=0.358 Sum_probs=34.5
Q ss_pred cceechhhHHHHHHHhhcCCCCC-CCCC-----EEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEE-RKGP-----RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~-~~~~-----~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|.+..+..|.=.|.++.... .++. .-|-|+|-.|+|||+||+.+.+
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~ 258 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEK 258 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHH
Confidence 58999888777776666653210 0111 1478999999999999999864
No 376
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.59 E-value=0.059 Score=48.45 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=19.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=.++++||..|.||||+|..+-
T Consensus 494 Ge~vALVGPSGsGKSTiasLL~ 515 (716)
T KOG0058|consen 494 GEVVALVGPSGSGKSTIASLLL 515 (716)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999998763
No 377
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.58 E-value=0.095 Score=44.20 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=18.4
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..|-|+|..|+||||+++.+.
T Consensus 150 GlilI~G~TGSGKTT~l~al~ 170 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIY 170 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999998874
No 378
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=93.55 E-value=0.062 Score=46.04 Aligned_cols=21 Identities=29% Similarity=0.638 Sum_probs=19.0
Q ss_pred CEEEEEecCCCCcHHHHHHHH
Q 037814 204 PRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~v 224 (229)
=+|++|+|..|+||||-++.+
T Consensus 100 G~V~GilG~NGiGKsTalkIL 120 (591)
T COG1245 100 GKVVGILGPNGIGKSTALKIL 120 (591)
T ss_pred CcEEEEEcCCCccHHHHHHHH
Confidence 479999999999999999865
No 379
>COG1084 Predicted GTPase [General function prediction only]
Probab=93.51 E-value=0.4 Score=39.34 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+++..|-|.|++-|||+||++.|=
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT 189 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLT 189 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHh
Confidence 568899999999999999999874
No 380
>PRK13764 ATPase; Provisional
Probab=93.49 E-value=0.098 Score=46.80 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=19.0
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-|-|.|..|+||||+++.+.+
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~ 279 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAE 279 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999998764
No 381
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.093 Score=46.08 Aligned_cols=49 Identities=33% Similarity=0.317 Sum_probs=32.5
Q ss_pred cceechhhHHHHHH---HhhcCCCC----CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVN---RLLCESSE----ERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~---~L~~~~~~----~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
++.|.+..++.+.+ +++....- .-...+.+=++|.+|.|||.||+.|.+
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh
Confidence 45666666655544 33322210 124466889999999999999999987
No 382
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.43 E-value=0.052 Score=45.99 Aligned_cols=48 Identities=27% Similarity=0.406 Sum_probs=31.7
Q ss_pred cceechhhHHHHHHHhhcCCCC-----------CCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 178 EIFGREKEKNELVNRLLCESSE-----------ERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~-----------~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
++.|..++...|.+-....... ..+.=.|++|+|..|.|||||.+++-
T Consensus 372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~ 430 (593)
T COG2401 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMIL 430 (593)
T ss_pred ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHH
Confidence 4556666666666554322110 12345689999999999999999874
No 383
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=93.42 E-value=0.073 Score=46.02 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
--|+|+|.+|+|||||...+.+.
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~ 226 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQ 226 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35789999999999999998765
No 384
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.1 Score=47.49 Aligned_cols=49 Identities=35% Similarity=0.413 Sum_probs=32.7
Q ss_pred cceechhhHHHH---HHHhhcCCC-C--CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNEL---VNRLLCESS-E--ERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l---~~~L~~~~~-~--~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
++-|.++.+++| +++|.+.+- . ..+-.+=+-++|.+|.|||-||+.|--
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAG 366 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAG 366 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhc
Confidence 577876666655 555544320 0 123356678999999999999999854
No 385
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.14 Score=45.39 Aligned_cols=51 Identities=33% Similarity=0.376 Sum_probs=37.4
Q ss_pred CcceechhhHHHHHHHhhcCCCCC------CCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSEE------RKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~------~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.++-|.+....+|.+++..-.-++ -...+=|-++|.+|+|||.||+.|-++
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge 246 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE 246 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh
Confidence 457789999998888876532111 123455679999999999999998654
No 386
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=93.30 E-value=0.096 Score=45.98 Aligned_cols=43 Identities=30% Similarity=0.300 Sum_probs=31.0
Q ss_pred CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-.+++|.+.-++.+.-.+. +-..+.++|..|+||||||+.+..
T Consensus 191 ~~dv~Gq~~~~~al~~aa~--------~g~~vlliG~pGsGKTtlar~l~~ 233 (499)
T TIGR00368 191 LKDIKGQQHAKRALEIAAA--------GGHNLLLFGPPGSGKTMLASRLQG 233 (499)
T ss_pred HHHhcCcHHHHhhhhhhcc--------CCCEEEEEecCCCCHHHHHHHHhc
Confidence 3567887766555443332 225899999999999999998863
No 387
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.29 E-value=0.13 Score=44.72 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=20.8
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..-.++-|.|.+|+|||||+.++.
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a 115 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVA 115 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHH
Confidence 445899999999999999998863
No 388
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=93.27 E-value=0.072 Score=48.85 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=..++|+|..|.|||||++.+..
T Consensus 483 G~~vaivG~sGsGKSTL~~ll~g 505 (694)
T TIGR01846 483 GEFIGIVGPSGSGKSTLTKLLQR 505 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998754
No 389
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=93.26 E-value=0.11 Score=47.44 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.3
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhc
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
...+|+|.|+.|+||||+++.+.+
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~ 464 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAE 464 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHH
Confidence 366999999999999999999865
No 390
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=93.21 E-value=0.085 Score=42.63 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
...+.|+|++|+|||||...+.+.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~ 141 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGK 141 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999988654
No 391
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.19 E-value=0.14 Score=42.40 Aligned_cols=21 Identities=43% Similarity=0.438 Sum_probs=17.9
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 037814 206 IISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-|-|.|-.|+|||||++.+.+
T Consensus 146 nilI~G~tGSGKTTll~aL~~ 166 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIA 166 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999988753
No 392
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.17 E-value=0.14 Score=42.20 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=29.8
Q ss_pred hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-.-.+.+.++|++. .++.||++.|.-|.||+||...+-
T Consensus 172 g~~~d~a~~ll~~~-----tdf~VIgvlG~QgsGKStllslLa 209 (491)
T KOG4181|consen 172 GIFNDNARKLLHKT-----TDFTVIGVLGGQGSGKSTLLSLLA 209 (491)
T ss_pred cchhhHHHHHhhcC-----CCeeEEEeecCCCccHHHHHHHHh
Confidence 33455677777654 569999999999999999987753
No 393
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.14 E-value=0.088 Score=39.23 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=19.5
Q ss_pred EEEEecCCCCcHHHHHHHHhcC
Q 037814 206 IISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
-+.+.|..|+||+||.+.+|-+
T Consensus 39 CvvL~G~SG~GKStllr~LYaN 60 (235)
T COG4778 39 CVVLHGPSGSGKSTLLRSLYAN 60 (235)
T ss_pred EEEeeCCCCCcHHHHHHHHHhc
Confidence 4668999999999999999965
No 394
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.075 Score=44.57 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.5
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
...+-|-.||.+|.|||-||+.|+..
T Consensus 243 rPWkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 243 RPWKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred cccceeeeeCCCCCcHHHHHHHHHHh
Confidence 45677889999999999999999853
No 395
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=93.11 E-value=0.059 Score=45.49 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=18.8
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..++|||-.|+|||||.+.+.
T Consensus 314 qTlGlVGESGSGKsTlG~all 334 (534)
T COG4172 314 QTLGLVGESGSGKSTLGLALL 334 (534)
T ss_pred CeEEEEecCCCCcchHHHHHH
Confidence 579999999999999998864
No 396
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.09 E-value=0.15 Score=43.09 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=20.6
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..-.++-|.|.+|+|||||+.++.
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a 103 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVA 103 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHH
Confidence 335799999999999999998875
No 397
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=93.09 E-value=0.18 Score=41.05 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.7
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
...+.|+|++++|||||...+.+.
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~ 144 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGK 144 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999988654
No 398
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.08 E-value=0.15 Score=44.61 Aligned_cols=41 Identities=32% Similarity=0.320 Sum_probs=28.1
Q ss_pred eechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 180 FGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 180 vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.|+..+.-..+..+.... -.+|.|.|..|+||||+...+.+
T Consensus 224 Lg~~~~~~~~l~~~~~~~------~GlilitGptGSGKTTtL~a~L~ 264 (486)
T TIGR02533 224 LGMSPELLSRFERLIRRP------HGIILVTGPTGSGKTTTLYAALS 264 (486)
T ss_pred cCCCHHHHHHHHHHHhcC------CCEEEEEcCCCCCHHHHHHHHHh
Confidence 566554444444444332 36999999999999999986543
No 399
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.08 E-value=0.14 Score=42.77 Aligned_cols=24 Identities=29% Similarity=0.170 Sum_probs=20.8
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+.-+|+=|+|..|+|||+|+.+++
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqla 147 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLC 147 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHH
Confidence 456899999999999999998764
No 400
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.01 E-value=0.12 Score=46.82 Aligned_cols=46 Identities=22% Similarity=0.199 Sum_probs=34.9
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+.++|....+.++++.+..-.. .+.. |-|+|-.|+||+++|+.|++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~---~~~p-vli~Ge~GtGK~~~A~~ih~ 370 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK---SSFP-VLLCGEEGVGKALLAQAIHN 370 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC---cCCC-EEEECCCCcCHHHHHHHHHH
Confidence 3588988888888777654321 2233 56999999999999999986
No 401
>PRK08149 ATP synthase SpaL; Validated
Probab=93.01 E-value=0.099 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..++|+|..|+|||||++.+.+.
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~ 174 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEH 174 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcC
Confidence 58899999999999999998764
No 402
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=93.00 E-value=0.09 Score=47.66 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=21.9
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
....+|.+.|+.|+||||+|+.+.+
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~ 482 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVER 482 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHH
Confidence 4578999999999999999998754
No 403
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=0.094 Score=46.02 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=20.8
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
++-..++|||..|.|||||++.+-
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL~ 368 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLLL 368 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 446799999999999999998763
No 404
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=92.96 E-value=0.11 Score=43.50 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
+...|+|+|.+++|||||...+.+.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~ 212 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGA 212 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999988764
No 405
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=92.95 E-value=0.14 Score=44.51 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=34.8
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.++|....+..+.+.+..-. ..-.-|-|.|-.|+|||++|+.+++.
T Consensus 139 ~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 58898888888777664322 22345779999999999999998764
No 406
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=92.95 E-value=0.13 Score=45.57 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=36.7
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+++|....++.+.+.+..-. ..-.-|-|.|-.|+||+++|+.|++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A----~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYA----RSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 359999988888888775322 12346779999999999999999874
No 407
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.94 E-value=0.1 Score=42.79 Aligned_cols=22 Identities=45% Similarity=0.673 Sum_probs=18.4
Q ss_pred CCCEEEEEecCCCCcHHHHHHH
Q 037814 202 KGPRIISLVGMGGIGKTTLAQF 223 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~ 223 (229)
+++.||-+||..|+||||=.-+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaK 158 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAK 158 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHH
Confidence 5689999999999999985433
No 408
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.94 E-value=0.11 Score=44.85 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.8
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
=..++|+|..|+|||||++.+..-
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999988643
No 409
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.86 E-value=0.1 Score=44.78 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.6
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..++|+|..|+|||||++.+.+.
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~ 185 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRG 185 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccC
Confidence 57999999999999999998754
No 410
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=92.86 E-value=0.14 Score=45.37 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=36.5
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+++|....+..+.+.+..-. ..-.-|-|.|-.|+||+++|+.|++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 358999988888888775322 12246779999999999999999863
No 411
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=92.80 E-value=0.082 Score=48.20 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.4
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+..+|.+||++|.||||+|+.+-
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~ 236 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQ 236 (664)
T ss_pred cceeEEecccCCCChhHHHHHHH
Confidence 45789999999999999999874
No 412
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=92.79 E-value=0.091 Score=43.61 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+.-|+|||.+++|||||...+-+
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~ 179 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSA 179 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhc
Confidence 56789999999999999999864
No 413
>CHL00195 ycf46 Ycf46; Provisional
Probab=92.79 E-value=0.17 Score=44.34 Aligned_cols=49 Identities=33% Similarity=0.343 Sum_probs=30.7
Q ss_pred cceechhhHHHHHHHhhc--C--CCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLC--E--SSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~--~--~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
++.|.+.-++.+.+.... . ..-.-+..+-|-++|..|+|||.||+.+-+
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 577877666655542211 0 000012345678999999999999998854
No 414
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=92.78 E-value=0.096 Score=44.99 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.1
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
=..++|+|..|+|||||++.+...
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcc
Confidence 368999999999999999988753
No 415
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=92.78 E-value=0.15 Score=47.08 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+++.|.|.+|+||||+++.+.
T Consensus 369 ~~~il~G~aGTGKTtll~~i~ 389 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAR 389 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHH
Confidence 478899999999999999875
No 416
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=92.77 E-value=0.094 Score=44.57 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.1
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+-=|+|||.+++|||||...+-+
T Consensus 159 iadValVG~PNaGKSTLln~Lt~ 181 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSA 181 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhC
Confidence 44699999999999999999864
No 417
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.69 E-value=0.16 Score=39.82 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=26.2
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.++|.-++ +++.|-... ..=.-|.|.+|+|||||.+-+
T Consensus 120 ~v~Gt~~~---li~~ly~~g------~lntLiigpP~~GKTTlLRdi 157 (308)
T COG3854 120 QVFGTANP---LIKDLYQNG------WLNTLIIGPPQVGKTTLLRDI 157 (308)
T ss_pred hhhccchH---HHHHHHhcC------ceeeEEecCCCCChHHHHHHH
Confidence 35565554 555555433 444678999999999998865
No 418
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=92.67 E-value=0.19 Score=42.28 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.7
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 201 RKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 201 ~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.....++.|||+-++|||||+..+-|.
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHH
Confidence 466899999999999999999988663
No 419
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=0.12 Score=42.07 Aligned_cols=25 Identities=40% Similarity=0.452 Sum_probs=22.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+....+.|||..|.|||-||+.|..
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa 188 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAA 188 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHH
Confidence 4468899999999999999999874
No 420
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=92.64 E-value=0.097 Score=43.55 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.2
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+.=|+|||.+++|||||...+-+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~ 180 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSA 180 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHc
Confidence 45689999999999999998864
No 421
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=92.64 E-value=0.15 Score=45.18 Aligned_cols=46 Identities=20% Similarity=0.141 Sum_probs=33.9
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..++|....+.++++.+..-.. .+ .-|-|+|-.|+||++||+.+++
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~---~~-~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM---LD-APLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC---CC-CCEEEECCCCccHHHHHHHHHH
Confidence 3589998888888777643221 11 2366999999999999999864
No 422
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.63 E-value=0.1 Score=45.60 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.7
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=.-|+|||-.|+||||+.+.++
T Consensus 378 GekVaIvG~nGsGKSTilr~Ll 399 (591)
T KOG0057|consen 378 GEKVAIVGSNGSGKSTILRLLL 399 (591)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999875
No 423
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=92.60 E-value=0.22 Score=39.44 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=21.4
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
....+|-|=|..||||||+|..|-+
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~ 111 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELAR 111 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHH
Confidence 4578999999999999999988743
No 424
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=92.57 E-value=0.095 Score=51.98 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.9
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=.+++|||..|+|||||++.+.
T Consensus 411 Ge~vaIvG~SGsGKSTLl~lL~ 432 (1466)
T PTZ00265 411 GKTYAFVGESGCGKSTILKLIE 432 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3699999999999999999874
No 425
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.53 E-value=0.19 Score=40.64 Aligned_cols=24 Identities=38% Similarity=0.328 Sum_probs=21.6
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+.-.|+=|+|..|.||||||-+++
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~ 81 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLV 81 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHH
Confidence 667899999999999999998865
No 426
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=0.28 Score=38.86 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=34.9
Q ss_pred cee-chhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814 179 IFG-REKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNND 228 (229)
Q Consensus 179 ~vG-~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~ 228 (229)
++| .+...++|.+.+.-.-.+ .-.+.+=+-++|.+|.|||-||+.|+++.
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht 205 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 205 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc
Confidence 454 577777777655322111 12446677899999999999999999875
No 427
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=92.46 E-value=0.26 Score=39.64 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=28.3
Q ss_pred chhhHHHHHHHhhcCCCCCCCCCEEEEEecC-CCCcHHHHHHHH
Q 037814 182 REKEKNELVNRLLCESSEERKGPRIISLVGM-GGIGKTTLAQFA 224 (229)
Q Consensus 182 ~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~-gGvGKTTLa~~v 224 (229)
..+..+.|..-|.-... .++.+||+|.+. ||+||||+|-.+
T Consensus 83 ~~e~~~~l~~~l~~~~~--~~~~~vi~vts~~~g~Gktt~a~nL 124 (274)
T TIGR03029 83 QVEALRALRSQLMLRWF--SEGRKALAVVSAKSGEGCSYIAANL 124 (274)
T ss_pred HHHHHHHHHHHhhhhcc--CCCCeEEEEECCCCCCCHHHHHHHH
Confidence 45667777666643221 155799999986 899999988653
No 428
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.45 E-value=0.19 Score=44.02 Aligned_cols=50 Identities=32% Similarity=0.346 Sum_probs=33.7
Q ss_pred Ccceechh---hHHHHHHHhhcCCCC---CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREK---EKNELVNRLLCESSE---ERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~---~~~~l~~~L~~~~~~---~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++-|.|+ |+++|+++|.+..-= ..+=.+=|-+||.+|.|||-||+.|--
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAG 359 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAG 359 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhc
Confidence 35678755 556677777653200 012256677999999999999999853
No 429
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.42 E-value=0.13 Score=44.24 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.2
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
=..++|+|-.|+|||||++.+.+.
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~ 181 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARN 181 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 468899999999999999998864
No 430
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=0.36 Score=39.19 Aligned_cols=51 Identities=29% Similarity=0.326 Sum_probs=36.9
Q ss_pred CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.++-|.+...++|.+-..-.-.+ .-+..+=|-.+|.+|.|||-||+.|-|.
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 46788999999998764221100 1234566679999999999999999875
No 431
>PRK11058 GTPase HflX; Provisional
Probab=92.27 E-value=0.14 Score=44.05 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
++..|+|+|..++|||||...+.+.
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~ 220 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEA 220 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999987753
No 432
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=92.25 E-value=0.13 Score=46.61 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|.|||||.+.+..
T Consensus 51 Ge~~aI~G~sGsGKSTLL~~L~g 73 (617)
T TIGR00955 51 GELLAVMGSSGAGKTTLMNALAF 73 (617)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999998864
No 433
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.23 E-value=0.24 Score=42.52 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=42.3
Q ss_pred CCCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 174 IDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 174 ~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..+..++||+.++..+.+|+...-+ .+.-.-+=|.|.+|.|||.+...||.+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~ 198 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDS 198 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHh
Confidence 3445799999999999999976542 255667788999999999999999876
No 434
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.23 E-value=0.16 Score=42.08 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.4
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..++|+|..|+|||||.+.+.+.
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~ 92 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARG 92 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCC
Confidence 57899999999999999988753
No 435
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.22 E-value=0.23 Score=43.06 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.0
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..-.++-|.|.+|+|||||+.++..
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~ 102 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAA 102 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999988753
No 436
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.10 E-value=0.22 Score=41.61 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.9
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+.-.++-|+|.+|+|||+|+..++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~ 144 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLC 144 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHH
Confidence 456899999999999999998765
No 437
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.09 E-value=0.25 Score=41.09 Aligned_cols=45 Identities=29% Similarity=0.332 Sum_probs=32.6
Q ss_pred CcceechhhHH---HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKN---ELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~---~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-+||..+.++ -|+++...+. -.=+.|-|+|.+|.|||.||--|-
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk----~aGrgiLi~GppgTGKTAlA~gIa 86 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGK----MAGRGILIVGPPGTGKTALAMGIA 86 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCc----ccccEEEEECCCCCcHHHHHHHHH
Confidence 34888777666 3566665543 334788899999999999996653
No 438
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.07 E-value=0.24 Score=43.38 Aligned_cols=43 Identities=28% Similarity=0.338 Sum_probs=29.6
Q ss_pred hhHHHHHHHhhcC-CCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 184 KEKNELVNRLLCE-SSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 184 ~~~~~l~~~L~~~-~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-+.++.+||..- .....-+-+|+-|.|..|+||||-++.+..
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHH
Confidence 3356788888710 000013456999999999999999998764
No 439
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=92.03 E-value=0.31 Score=40.83 Aligned_cols=45 Identities=29% Similarity=0.388 Sum_probs=29.6
Q ss_pred CcceechhhHHH---HHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 177 SEIFGREKEKNE---LVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 177 ~~~vG~~~~~~~---l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-+||..+.++. +++++....- .=+.|-+.|.+|.|||+||-.+-
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~----aGr~iLiaGppGtGKTAlA~~ia 71 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKI----AGRAILIAGPPGTGKTALAMAIA 71 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT------TT-EEEEEE-TTSSHHHHHHHHH
T ss_pred ccccChHHHHHHHHHHHHHHhcccc----cCcEEEEeCCCCCCchHHHHHHH
Confidence 358998877764 4666655431 23677799999999999997764
No 440
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=91.98 E-value=0.26 Score=40.07 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=31.1
Q ss_pred Ccceech---hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGRE---KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~---~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+..+|.. +-.++|.++|..... ....=+-|||-.|.|||++++..+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~---~Rmp~lLivG~snnGKT~Ii~rF~~ 83 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKR---HRMPNLLIVGDSNNGKTMIIERFRR 83 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcc---cCCCceEEecCCCCcHHHHHHHHHH
Confidence 3455543 334455555544332 3445588999999999999998774
No 441
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=91.98 E-value=0.21 Score=42.06 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.-+.+||+.|+|||||...+.+.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999998763
No 442
>PRK05922 type III secretion system ATPase; Validated
Probab=91.97 E-value=0.15 Score=43.77 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..++|+|..|+|||||.+.+.+.
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~ 180 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKG 180 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhcc
Confidence 46899999999999999998654
No 443
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=91.94 E-value=0.18 Score=43.21 Aligned_cols=31 Identities=35% Similarity=0.423 Sum_probs=24.8
Q ss_pred HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 187 NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 187 ~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
++|++.|.+.. .=|-|-|.+|.||||.||.+
T Consensus 253 dkl~eRL~era-------eGILIAG~PGaGKsTFaqAl 283 (604)
T COG1855 253 DKLKERLEERA-------EGILIAGAPGAGKSTFAQAL 283 (604)
T ss_pred HHHHHHHHhhh-------cceEEecCCCCChhHHHHHH
Confidence 47777777654 35678999999999999986
No 444
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=91.88 E-value=0.12 Score=51.17 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.9
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=..++|||..|+|||||++.+.
T Consensus 1194 G~~vAIVG~SGsGKSTl~~LL~ 1215 (1466)
T PTZ00265 1194 KKTTAIVGETGSGKSTVMSLLM 1215 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999874
No 445
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=0.34 Score=44.55 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=35.0
Q ss_pred cceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 178 EIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.++|-+..+..|.+-+.-.. .+.+..+.+.-.+|..|||||-||+.+
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaL 541 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKAL 541 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHH
Confidence 58999988888877663211 112367889999999999999887763
No 446
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.79 E-value=0.26 Score=43.19 Aligned_cols=24 Identities=33% Similarity=0.278 Sum_probs=20.9
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+.=+++-|.|.+|+|||||+.++.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~ 284 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFL 284 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 556899999999999999998754
No 447
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=91.78 E-value=0.11 Score=39.94 Aligned_cols=19 Identities=47% Similarity=0.576 Sum_probs=16.2
Q ss_pred EEEEecCCCCcHHHHHHHH
Q 037814 206 IISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~v 224 (229)
---+||..|.|||||.+.+
T Consensus 42 RcLlVGaNGaGKtTlLKiL 60 (291)
T KOG2355|consen 42 RCLLVGANGAGKTTLLKIL 60 (291)
T ss_pred eEEEEecCCCchhhhHHHh
Confidence 4457999999999999875
No 448
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=0.19 Score=44.73 Aligned_cols=54 Identities=28% Similarity=0.337 Sum_probs=36.0
Q ss_pred CCCCcceechhhHHHHHHHhhcCCCCC------CCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 174 IDESEIFGREKEKNELVNRLLCESSEE------RKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 174 ~~~~~~vG~~~~~~~l~~~L~~~~~~~------~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..-.++-|.++.++++.+.+..-.+++ ..=.+=+..+|.+|.|||.||+.+-..
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE 206 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE 206 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcc
Confidence 334568898877776655543322110 123567889999999999999998544
No 449
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=91.73 E-value=0.27 Score=42.50 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=33.6
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|....+.++.+.+..-.. .+..|+ |.|-.|+|||+||+.++.
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~---~~~~vl-i~Ge~GtGK~~lA~~ih~ 184 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAP---SDITVL-LLGESGTGKEVLARALHQ 184 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhC---CCCCEE-EECCCCcCHHHHHHHHHH
Confidence 478888888887776653221 334555 999999999999999875
No 450
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=91.71 E-value=0.17 Score=43.51 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.8
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..++|+|..|+|||||++.+...
T Consensus 158 q~~~i~G~sG~GKStLl~~i~~~ 180 (434)
T PRK08472 158 QKLGIFAGSGVGKSTLMGMIVKG 180 (434)
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 58999999999999999998754
No 451
>PLN03232 ABC transporter C family member; Provisional
Probab=91.59 E-value=0.15 Score=50.77 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=..|+|||..|.|||||++.++.
T Consensus 1262 GekvaIVG~SGSGKSTL~~lL~r 1284 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKSSMLNALFR 1284 (1495)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999998764
No 452
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=91.59 E-value=0.26 Score=48.90 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=27.4
Q ss_pred hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+..++.+..+|.... +++.|.|.+|+||||+.+.|.
T Consensus 838 ~~Qr~Av~~iLts~d-------r~~~IqG~AGTGKTT~l~~i~ 873 (1623)
T PRK14712 838 SGQRAATRMILETSD-------RFTVVQGYAGVGKTTQFRAVM 873 (1623)
T ss_pred HHHHHHHHHHHhCCC-------ceEEEEeCCCCCHHHHHHHHH
Confidence 455666666665443 699999999999999977663
No 453
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=0.15 Score=45.26 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=21.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcCC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNND 228 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d~ 228 (229)
..=|-+||.+|+|||-||+.|-|..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa 569 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA 569 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc
Confidence 4557799999999999999998864
No 454
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.56 E-value=0.18 Score=40.42 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHH
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
++=.+++.+|..|.||||+.+.+
T Consensus 48 P~G~ivgflGaNGAGKSTtLKmL 70 (325)
T COG4586 48 PKGEIVGFLGANGAGKSTTLKML 70 (325)
T ss_pred CCCcEEEEEcCCCCcchhhHHHH
Confidence 44579999999999999999875
No 455
>PRK06936 type III secretion system ATPase; Provisional
Probab=91.56 E-value=0.2 Score=43.10 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.9
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcCC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNND 228 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d~ 228 (229)
=..++|+|-.|+|||||.+.+++..
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCC
Confidence 3689999999999999999998653
No 456
>PRK09862 putative ATP-dependent protease; Provisional
Probab=91.47 E-value=0.21 Score=43.83 Aligned_cols=42 Identities=33% Similarity=0.425 Sum_probs=28.9
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|....++.+. +-. .+-..+.|+|..|.|||||++.+..
T Consensus 191 ~~v~Gq~~~~~al~-laa-------~~G~~llliG~~GsGKTtLak~L~g 232 (506)
T PRK09862 191 SDVIGQEQGKRGLE-ITA-------AGGHNLLLIGPPGTGKTMLASRING 232 (506)
T ss_pred EEEECcHHHHhhhh-eec-------cCCcEEEEECCCCCcHHHHHHHHhc
Confidence 35667655444432 211 2347999999999999999998864
No 457
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=91.40 E-value=0.19 Score=41.23 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.0
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
....||++||..-.|||||.+.+-
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT 199 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALT 199 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHH
Confidence 447899999999999999998863
No 458
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=91.40 E-value=0.21 Score=43.12 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..++|+|-.|+|||||++.+.+
T Consensus 169 qrigI~G~sG~GKSTLl~~I~g 190 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTR 190 (451)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999865
No 459
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=91.39 E-value=0.17 Score=50.08 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
=.+++|+|..|.|||||.+.+...
T Consensus 87 Ge~~aIlG~nGsGKSTLLk~LaG~ 110 (1394)
T TIGR00956 87 GELTVVLGRPGSGCSTLLKTIASN 110 (1394)
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999998753
No 460
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=91.39 E-value=0.11 Score=44.40 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=18.1
Q ss_pred EEEecCCCCcHHHHHHHHhcC
Q 037814 207 ISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 207 i~IvG~gGvGKTTLa~~vy~d 227 (229)
-++||..|.|||||.++|-+.
T Consensus 293 YGLVGPNG~GKTTLLkHIa~R 313 (807)
T KOG0066|consen 293 YGLVGPNGMGKTTLLKHIAAR 313 (807)
T ss_pred ecccCCCCCchHHHHHHHHhh
Confidence 378999999999999998653
No 461
>CHL00189 infB translation initiation factor 2; Provisional
Probab=91.34 E-value=0.2 Score=45.97 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.0
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
....+|+|+|..|+|||||+..+.+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~ 266 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRK 266 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHh
Confidence 4568999999999999999988764
No 462
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=91.29 E-value=0.16 Score=46.20 Aligned_cols=50 Identities=26% Similarity=0.326 Sum_probs=31.2
Q ss_pred cceechhhHHHHHHHhhcCCCC------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 178 EIFGREKEKNELVNRLLCESSE------ERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
++.|.+..++.|.+++.....+ ...-.+-|.++|..|+||||||+.+.+.
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~ 208 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 208 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 5677776666665544221100 0011223889999999999999988653
No 463
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=91.28 E-value=0.17 Score=43.86 Aligned_cols=24 Identities=29% Similarity=0.618 Sum_probs=21.1
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhc
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.=++|++||..|.||+|+.+.+|.
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfR 586 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFR 586 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHH
Confidence 347999999999999999998763
No 464
>PLN03140 ABC transporter G family member; Provisional
Probab=91.26 E-value=0.18 Score=50.02 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhc
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.=.+++|+|..|.|||||.+.+..
T Consensus 190 ~Ge~~~llGpnGSGKSTLLk~LaG 213 (1470)
T PLN03140 190 PSRMTLLLGPPSSGKTTLLLALAG 213 (1470)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Confidence 346999999999999999998865
No 465
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.25 E-value=0.22 Score=42.65 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..++|+|-.|+|||||++.+...
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~ 163 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARN 163 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCC
Confidence 58999999999999999988764
No 466
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=91.21 E-value=0.48 Score=38.51 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.8
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 201 RKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 201 ~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
...+.|--|-|.=|.|||||..+|...
T Consensus 54 ~~rIPvtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743|consen 54 GARIPVTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred CCccceEEEEecccCChHHHHHHHHcc
Confidence 467899999999999999999998754
No 467
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=91.20 E-value=0.29 Score=46.82 Aligned_cols=22 Identities=45% Similarity=0.652 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
++..|.|.+|.||||+.+.+..
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~ 419 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAARE 419 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 6889999999999999998753
No 468
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=91.20 E-value=0.23 Score=44.61 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
....+|+|+|..++|||||...+.+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~ 109 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRK 109 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999998765
No 469
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=91.19 E-value=0.18 Score=43.37 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.1
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
=..++|+|-.|+|||||++.+.+.
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~ 178 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNA 178 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCC
Confidence 368999999999999999998754
No 470
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=91.18 E-value=0.19 Score=46.67 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=23.8
Q ss_pred hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHH
Q 037814 183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQF 223 (229)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~ 223 (229)
+..++.+.+.|...+ -.-|.||+|.||||+.-.
T Consensus 672 ~dQr~A~~k~L~aed--------y~LI~GMPGTGKTTtI~~ 704 (1100)
T KOG1805|consen 672 NDQRQALLKALAAED--------YALILGMPGTGKTTTISL 704 (1100)
T ss_pred HHHHHHHHHHHhccc--------hheeecCCCCCchhhHHH
Confidence 456667777776544 345899999999997654
No 471
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=91.17 E-value=0.17 Score=43.61 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.9
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
=..++|+|-.|+|||||++.+.+.
T Consensus 175 Gqri~I~G~sG~GKTTLL~~Ia~~ 198 (455)
T PRK07960 175 GQRMGLFAGSGVGKSVLLGMMARY 198 (455)
T ss_pred CcEEEEECCCCCCccHHHHHHhCC
Confidence 367999999999999999988653
No 472
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=91.15 E-value=0.21 Score=42.96 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+--|+|||.+.+|||||...+.+
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ 180 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSN 180 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHc
Confidence 45799999999999999999875
No 473
>PLN03140 ABC transporter G family member; Provisional
Probab=91.15 E-value=0.18 Score=49.96 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|.|||||.+.+..
T Consensus 906 Gel~aL~G~sGaGKTTLL~~LaG 928 (1470)
T PLN03140 906 GVLTALMGVSGAGKTTLMDVLAG 928 (1470)
T ss_pred CeEEEEECCCCCCHHHHHHHHcC
Confidence 36999999999999999998764
No 474
>PRK06820 type III secretion system ATPase; Validated
Probab=91.14 E-value=0.23 Score=42.83 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..++|+|-.|+|||||++.+...
T Consensus 164 qri~I~G~sG~GKStLl~~I~~~ 186 (440)
T PRK06820 164 QRIGIFAAAGVGKSTLLGMLCAD 186 (440)
T ss_pred CEEEEECCCCCChHHHHHHHhcc
Confidence 47899999999999999998754
No 475
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=91.05 E-value=0.21 Score=43.14 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-.+++|+|..|+|||||++.+.+
T Consensus 158 Gq~i~I~G~sG~GKStLl~~I~~ 180 (438)
T PRK07721 158 GQRVGIFAGSGVGKSTLMGMIAR 180 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 47999999999999999998765
No 476
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=91.03 E-value=0.2 Score=38.43 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=15.2
Q ss_pred EEEEecCCCCcHHHHHHHH
Q 037814 206 IISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~v 224 (229)
-+.|+|..|.|||++++.+
T Consensus 40 h~li~G~tgsGKS~~l~~l 58 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTL 58 (205)
T ss_dssp SEEEE--TTSSHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHH
Confidence 6889999999999999865
No 477
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=90.96 E-value=0.19 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=..|+|||..|.|||||++.++.
T Consensus 1312 GekiaIVGrTGsGKSTL~~lL~r 1334 (1522)
T TIGR00957 1312 GEKVGIVGRTGAGKSSLTLGLFR 1334 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999998864
No 478
>PLN03130 ABC transporter C family member; Provisional
Probab=90.95 E-value=0.19 Score=50.40 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=..|+|||..|.|||||++.++.
T Consensus 1265 GekVaIVGrSGSGKSTLl~lL~r 1287 (1622)
T PLN03130 1265 SEKVGIVGRTGAGKSSMLNALFR 1287 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999864
No 479
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=90.90 E-value=0.25 Score=42.50 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.9
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
-..++|+|..|+|||||.+.+.+.
T Consensus 145 Gq~~~I~G~sG~GKStLl~~I~~~ 168 (422)
T TIGR02546 145 GQRIGIFAGAGVGKSTLLGMIARG 168 (422)
T ss_pred CCEEEEECCCCCChHHHHHHHhCC
Confidence 357899999999999999988754
No 480
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=90.84 E-value=0.21 Score=49.51 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.4
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|.|||||.+.+..
T Consensus 789 Ge~~aI~G~sGaGKSTLL~~Lag 811 (1394)
T TIGR00956 789 GTLTALMGASGAGKTTLLNVLAE 811 (1394)
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999998764
No 481
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=90.83 E-value=0.26 Score=42.17 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.4
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..++|+|-.|+|||||++.+.+.
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~ 160 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARY 160 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999988753
No 482
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.61 E-value=0.36 Score=48.42 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=26.6
Q ss_pred hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+..++.+..+|...+ +++.|.|.+|+||||+.+.|.
T Consensus 970 ~~Q~~Av~~il~s~d-------r~~~I~G~AGTGKTT~l~~v~ 1005 (1747)
T PRK13709 970 SGQRAATRMILESTD-------RFTVVQGYAGVGKTTQFRAVM 1005 (1747)
T ss_pred HHHHHHHHHHHhCCC-------cEEEEEeCCCCCHHHHHHHHH
Confidence 345555555554332 699999999999999998764
No 483
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=90.54 E-value=0.28 Score=42.35 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..++|+|-.|+|||||++.+.+.
T Consensus 164 q~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 164 QRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999988753
No 484
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=90.50 E-value=0.28 Score=45.15 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.1
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..+..|+|+|.+++|||||...+.+.
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~ 298 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGR 298 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999988653
No 485
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=90.50 E-value=0.2 Score=49.87 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=..|+|||..|.|||||++.++.
T Consensus 1245 GekvaIvGrSGsGKSTLl~lL~r 1267 (1490)
T TIGR01271 1245 GQRVGLLGRTGSGKSTLLSALLR 1267 (1490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46799999999999999998763
No 486
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=90.49 E-value=0.56 Score=43.90 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=32.7
Q ss_pred cceechhhHHHHHHHhhcCCCCC---------------CCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEE---------------RKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~---------------~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|.+..+..|+=.|..+.... -.+-.-|-|+|-+|+|||+||+.|.+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~ 514 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHL 514 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHH
Confidence 46777777776665555543100 01112577999999999999999875
No 487
>COG3910 Predicted ATPase [General function prediction only]
Probab=90.48 E-value=0.29 Score=37.13 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.4
Q ss_pred CEEEEEecCCCCcHHHHHHHH
Q 037814 204 PRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~v 224 (229)
..|--|+|-.|+||+||...|
T Consensus 37 apIT~i~GENGsGKSTLLEai 57 (233)
T COG3910 37 APITFITGENGSGKSTLLEAI 57 (233)
T ss_pred CceEEEEcCCCccHHHHHHHH
Confidence 468889999999999998775
No 488
>PTZ00243 ABC transporter; Provisional
Probab=90.46 E-value=0.23 Score=49.75 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=..|+|||-.|.|||||++.+..
T Consensus 1336 GekVaIVGrTGSGKSTLl~lLlr 1358 (1560)
T PTZ00243 1336 REKVGIVGRTGSGKSTLLLTFMR 1358 (1560)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999998753
No 489
>PRK09099 type III secretion system ATPase; Provisional
Probab=90.37 E-value=0.31 Score=42.07 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=21.1
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
=..++|+|..|+|||||++.+...
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~ 186 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARG 186 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998753
No 490
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.33 E-value=0.2 Score=42.70 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.2
Q ss_pred CEEEEEecCCCCcHHHHHHHH
Q 037814 204 PRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~v 224 (229)
..-+-++|..|+||||+|+.+
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~l 56 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAF 56 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHH
Confidence 356779999999999999876
No 491
>PRK11670 antiporter inner membrane protein; Provisional
Probab=90.30 E-value=0.28 Score=41.41 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=16.8
Q ss_pred CEEEEEec-CCCCcHHHHHHHH
Q 037814 204 PRIISLVG-MGGIGKTTLAQFA 224 (229)
Q Consensus 204 ~~Vi~IvG-~gGvGKTTLa~~v 224 (229)
.+||+|.. -||+||||++-.+
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNL 128 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNL 128 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHH
Confidence 57888864 5999999998654
No 492
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=90.25 E-value=0.4 Score=40.92 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=18.3
Q ss_pred EEEEecCCCCcHHHHHHHHh
Q 037814 206 IISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~vy 225 (229)
++.|+|.-++|||||++.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~ 58 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLI 58 (398)
T ss_pred EEEEECCccccHHHHHHHHH
Confidence 99999999999999997754
No 493
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=90.21 E-value=0.46 Score=38.74 Aligned_cols=42 Identities=31% Similarity=0.234 Sum_probs=35.0
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+++|-+..+..|..-|... .+.+.-.+|.+|.|||+-|...
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalaf 77 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAF 77 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHH
Confidence 36899999999999888763 3678899999999999977654
No 494
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=90.21 E-value=0.28 Score=50.29 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+++|+|..|.|||||.+.+...
T Consensus 1966 Ei~gLLG~NGAGKTTLlkmL~Gl 1988 (2272)
T TIGR01257 1966 ECFGLLGVNGAGKTTTFKMLTGD 1988 (2272)
T ss_pred cEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998754
No 495
>PRK13796 GTPase YqeH; Provisional
Probab=90.21 E-value=0.43 Score=40.27 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..+.|||+.++||+||...+..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~ 182 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIK 182 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHh
Confidence 3678999999999999998864
No 496
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=90.18 E-value=0.41 Score=39.33 Aligned_cols=19 Identities=42% Similarity=0.569 Sum_probs=14.8
Q ss_pred EEEecCCCCcHHHHHHHHh
Q 037814 207 ISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 207 i~IvG~gGvGKTTLa~~vy 225 (229)
.-|+|.||+|||||+-..+
T Consensus 92 ~~~~gdsg~GKttllL~l~ 110 (402)
T COG3598 92 SILYGDSGVGKTTLLLYLC 110 (402)
T ss_pred EEEecCCcccHhHHHHHHH
Confidence 3355999999999986643
No 497
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=90.16 E-value=0.26 Score=43.09 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhcCC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNND 228 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d~ 228 (229)
.-.+|+|.+|.||||+.+.||..+
T Consensus 102 ~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 102 RRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred ceEEEEcCCCCcHhHHHHHHhcCC
Confidence 568999999999999999998653
No 498
>PRK12678 transcription termination factor Rho; Provisional
Probab=90.14 E-value=0.27 Score=43.67 Aligned_cols=22 Identities=32% Similarity=0.154 Sum_probs=19.5
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-..|||..|+|||||++.|-|
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn 438 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIAN 438 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHH
Confidence 4578999999999999999876
No 499
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=90.00 E-value=0.33 Score=41.57 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.9
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
=..++|+|-.|+|||||++.+.+.
T Consensus 137 Gqri~I~G~sG~GKTtLl~~i~~~ 160 (413)
T TIGR03497 137 GQRVGIFAGSGVGKSTLLGMIARN 160 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999988753
No 500
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=89.96 E-value=0.39 Score=38.38 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=20.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..-.|.=|+|.+|+|||.|+-+++
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~ 59 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLA 59 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEEEecccccchHHHHHH
Confidence 445799999999999999987654
Done!