Query 037814
Match_columns 229
No_of_seqs 137 out of 1348
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 07:17:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qfl_A MLA10; coiled-coil, (CC 99.8 2.5E-20 8.7E-25 129.2 3.9 80 4-87 1-82 (115)
2 2a5y_B CED-4; apoptosis; HET: 99.3 4.5E-12 1.5E-16 110.6 6.0 44 180-226 131-174 (549)
3 3sfz_A APAF-1, apoptotic pepti 99.1 3.7E-11 1.3E-15 113.4 4.6 48 176-227 123-170 (1249)
4 1z6t_A APAF-1, apoptotic prote 98.9 1.3E-09 4.4E-14 95.7 6.9 47 177-227 124-170 (591)
5 1vt4_I APAF-1 related killer D 98.8 1.6E-09 5.3E-14 99.2 4.2 45 179-228 130-174 (1221)
6 1w5s_A Origin recognition comp 98.3 2.2E-07 7.5E-12 77.7 3.3 51 177-227 22-75 (412)
7 1jbk_A CLPB protein; beta barr 98.2 1.8E-06 6.2E-11 63.9 5.3 44 177-226 22-65 (195)
8 2qby_A CDC6 homolog 1, cell di 98.2 1.2E-06 4E-11 72.3 4.7 49 176-226 19-67 (386)
9 2p65_A Hypothetical protein PF 98.1 2.8E-06 9.4E-11 62.7 4.7 44 177-226 22-65 (187)
10 1njg_A DNA polymerase III subu 98.1 2.6E-06 8.8E-11 65.4 4.4 44 178-226 24-67 (250)
11 2v1u_A Cell division control p 98.1 3.4E-06 1.1E-10 69.6 4.8 48 177-226 19-66 (387)
12 1fnn_A CDC6P, cell division co 98.0 3.7E-06 1.3E-10 69.6 4.5 50 177-226 17-66 (389)
13 2qby_B CDC6 homolog 3, cell di 98.0 5E-06 1.7E-10 68.7 4.8 48 177-226 20-67 (384)
14 2chg_A Replication factor C sm 98.0 6.1E-06 2.1E-10 62.4 4.4 44 177-226 17-60 (226)
15 1sxj_B Activator 1 37 kDa subu 97.7 3E-05 1E-09 62.3 4.4 44 177-226 21-64 (323)
16 1iqp_A RFCS; clamp loader, ext 97.7 3.9E-05 1.3E-09 61.8 4.8 44 177-226 25-68 (327)
17 3n70_A Transport activator; si 97.6 3.6E-05 1.2E-09 54.8 3.8 46 178-227 2-47 (145)
18 3ec2_A DNA replication protein 97.6 5E-05 1.7E-09 56.0 3.8 42 182-226 19-60 (180)
19 3h4m_A Proteasome-activating n 97.6 6.4E-05 2.2E-09 59.5 4.6 51 177-227 17-74 (285)
20 3pxg_A Negative regulator of g 97.5 8.3E-05 2.9E-09 63.4 4.9 44 177-226 180-223 (468)
21 1sxj_D Activator 1 41 kDa subu 97.5 7.9E-05 2.7E-09 60.7 4.6 44 177-226 37-80 (353)
22 1jr3_A DNA polymerase III subu 97.5 0.0001 3.5E-09 60.5 4.7 44 178-226 17-60 (373)
23 3pfi_A Holliday junction ATP-d 97.5 7.2E-05 2.5E-09 60.8 3.8 49 177-226 29-77 (338)
24 3co5_A Putative two-component 97.4 4.2E-05 1.4E-09 54.4 1.7 46 178-227 5-50 (143)
25 1sxj_A Activator 1 95 kDa subu 97.4 0.00016 5.4E-09 62.5 5.0 50 177-226 39-99 (516)
26 3syl_A Protein CBBX; photosynt 97.4 0.00012 4.2E-09 58.5 4.0 49 178-226 32-89 (309)
27 3cf0_A Transitional endoplasmi 97.4 0.00018 6.3E-09 57.6 4.9 51 177-227 15-72 (301)
28 3b9p_A CG5977-PA, isoform A; A 97.4 0.00016 5.4E-09 57.6 4.5 50 177-226 21-76 (297)
29 1in4_A RUVB, holliday junction 97.4 0.00012 4.2E-09 59.5 3.8 48 178-226 26-73 (334)
30 1hqc_A RUVB; extended AAA-ATPa 97.3 5.9E-05 2E-09 60.8 1.9 49 177-226 12-60 (324)
31 3te6_A Regulatory protein SIR3 97.3 5.6E-05 1.9E-09 61.1 1.7 47 179-227 22-68 (318)
32 3uk6_A RUVB-like 2; hexameric 97.3 0.00024 8.2E-09 58.3 5.4 46 177-226 44-92 (368)
33 3d8b_A Fidgetin-like protein 1 97.3 0.00015 5.2E-09 59.5 4.1 50 177-226 84-139 (357)
34 3eie_A Vacuolar protein sortin 97.3 0.00026 8.9E-09 57.3 5.1 50 177-226 18-73 (322)
35 2w58_A DNAI, primosome compone 97.3 0.00021 7.2E-09 53.5 4.3 41 184-226 36-76 (202)
36 2chq_A Replication factor C sm 97.3 0.0002 6.9E-09 57.3 4.4 44 177-226 17-60 (319)
37 2r62_A Cell division protease 97.3 0.00028 9.5E-09 55.3 4.7 50 177-226 11-66 (268)
38 1sxj_E Activator 1 40 kDa subu 97.2 0.00018 6.3E-09 58.7 3.4 44 177-226 14-58 (354)
39 3bos_A Putative DNA replicatio 97.2 0.00038 1.3E-08 53.2 5.0 43 178-226 29-74 (242)
40 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.00036 1.2E-08 56.5 4.9 50 177-226 12-67 (322)
41 3pvs_A Replication-associated 97.2 0.00025 8.4E-09 60.1 4.1 44 177-226 26-72 (447)
42 1qvr_A CLPB protein; coiled co 97.2 0.00024 8.2E-09 65.0 4.2 44 177-226 170-213 (854)
43 1lv7_A FTSH; alpha/beta domain 97.2 0.00028 9.5E-09 55.0 4.0 50 177-226 12-67 (257)
44 3u61_B DNA polymerase accessor 97.2 0.00039 1.3E-08 56.1 4.9 46 177-227 26-71 (324)
45 3pxi_A Negative regulator of g 97.2 0.00036 1.2E-08 63.0 4.9 44 177-226 180-223 (758)
46 1ofh_A ATP-dependent HSL prote 97.1 0.00027 9.4E-09 56.3 3.6 50 177-226 15-72 (310)
47 1r6b_X CLPA protein; AAA+, N-t 97.1 0.00044 1.5E-08 62.4 5.3 44 177-226 186-229 (758)
48 1d2n_A N-ethylmaleimide-sensit 97.1 0.00081 2.8E-08 52.8 6.1 47 177-226 33-86 (272)
49 4fcw_A Chaperone protein CLPB; 97.1 0.0006 2E-08 54.5 5.4 49 178-226 18-69 (311)
50 2hf9_A Probable hydrogenase ni 97.1 0.00045 1.5E-08 52.5 4.3 24 203-226 37-60 (226)
51 1sxj_C Activator 1 40 kDa subu 97.1 0.00044 1.5E-08 56.3 4.3 43 178-226 26-68 (340)
52 2x8a_A Nuclear valosin-contain 97.0 0.00067 2.3E-08 53.6 5.0 49 177-226 10-66 (274)
53 1htw_A HI0065; nucleotide-bind 97.0 0.00042 1.5E-08 50.1 3.5 21 205-225 34-54 (158)
54 3vfd_A Spastin; ATPase, microt 97.0 0.00052 1.8E-08 57.0 4.4 51 177-227 115-171 (389)
55 3tqc_A Pantothenate kinase; bi 97.0 0.00073 2.5E-08 54.6 5.1 41 183-225 73-113 (321)
56 2ged_A SR-beta, signal recogni 97.0 0.00077 2.6E-08 49.7 4.9 26 202-227 46-71 (193)
57 1ixz_A ATP-dependent metallopr 97.0 0.0006 2.1E-08 53.0 4.5 49 177-226 16-71 (254)
58 2qp9_X Vacuolar protein sortin 97.0 0.00064 2.2E-08 55.8 4.8 50 177-226 51-106 (355)
59 3aez_A Pantothenate kinase; tr 97.0 0.00054 1.9E-08 55.2 4.1 24 202-225 88-111 (312)
60 3hws_A ATP-dependent CLP prote 97.0 0.00071 2.4E-08 55.6 4.8 49 178-226 16-73 (363)
61 1l8q_A Chromosomal replication 97.0 0.001 3.5E-08 53.6 5.6 37 186-226 23-59 (324)
62 2kjq_A DNAA-related protein; s 97.0 0.00027 9.2E-09 50.6 1.9 22 205-226 37-58 (149)
63 3e70_C DPA, signal recognition 97.0 0.00082 2.8E-08 54.5 4.9 24 202-225 127-150 (328)
64 2og2_A Putative signal recogni 96.9 0.0012 4.1E-08 54.2 5.7 24 202-225 155-178 (359)
65 2zan_A Vacuolar protein sortin 96.9 0.00079 2.7E-08 57.0 4.6 50 177-226 134-189 (444)
66 2yhs_A FTSY, cell division pro 96.9 0.0013 4.4E-08 56.1 5.8 24 202-225 291-314 (503)
67 1rj9_A FTSY, signal recognitio 96.9 0.00062 2.1E-08 54.7 3.6 23 203-225 101-123 (304)
68 1vma_A Cell division protein F 96.9 0.0015 5E-08 52.5 5.6 24 202-225 102-125 (306)
69 3p32_A Probable GTPase RV1496/ 96.8 0.0014 4.8E-08 53.7 5.5 36 186-225 65-100 (355)
70 2r44_A Uncharacterized protein 96.8 0.00073 2.5E-08 54.7 3.7 41 178-226 28-68 (331)
71 1zu4_A FTSY; GTPase, signal re 96.8 0.0018 6.1E-08 52.4 5.8 24 202-225 103-126 (320)
72 1iy2_A ATP-dependent metallopr 96.8 0.00093 3.2E-08 52.7 4.0 49 177-226 40-95 (278)
73 2c9o_A RUVB-like 1; hexameric 96.8 0.0015 5.1E-08 55.4 5.5 46 177-226 37-85 (456)
74 2xxa_A Signal recognition part 96.8 0.0018 6E-08 54.6 5.8 41 185-225 78-121 (433)
75 3b9q_A Chloroplast SRP recepto 96.8 0.00088 3E-08 53.7 3.8 23 203-225 99-121 (302)
76 1ypw_A Transitional endoplasmi 96.8 0.0011 3.7E-08 60.3 4.5 51 177-227 204-261 (806)
77 2f6r_A COA synthase, bifunctio 96.8 0.00097 3.3E-08 52.9 3.7 24 202-225 73-96 (281)
78 2olj_A Amino acid ABC transpor 96.8 0.00077 2.6E-08 52.9 3.1 22 205-226 51-72 (263)
79 1sgw_A Putative ABC transporte 96.8 0.00067 2.3E-08 51.6 2.7 22 205-226 36-57 (214)
80 2px0_A Flagellar biosynthesis 96.7 0.00089 3E-08 53.5 3.3 23 203-225 104-126 (296)
81 2zu0_C Probable ATP-dependent 96.7 0.00088 3E-08 52.7 3.2 22 205-226 47-68 (267)
82 3fwy_A Light-independent proto 96.7 0.001 3.4E-08 53.7 3.6 23 202-224 46-68 (314)
83 1vpl_A ABC transporter, ATP-bi 96.7 0.00087 3E-08 52.4 3.1 22 205-226 42-63 (256)
84 2ff7_A Alpha-hemolysin translo 96.7 0.0009 3.1E-08 52.0 3.1 22 205-226 36-57 (247)
85 3nbx_X ATPase RAVA; AAA+ ATPas 96.7 0.0016 5.3E-08 55.9 4.8 41 178-226 23-63 (500)
86 4g1u_C Hemin import ATP-bindin 96.7 0.0009 3.1E-08 52.6 3.1 21 205-225 38-58 (266)
87 2ixe_A Antigen peptide transpo 96.7 0.00091 3.1E-08 52.8 3.1 22 205-226 46-67 (271)
88 3nwj_A ATSK2; P loop, shikimat 96.7 0.00078 2.7E-08 52.5 2.6 21 205-225 49-69 (250)
89 2ghi_A Transport protein; mult 96.7 0.00098 3.3E-08 52.2 3.1 22 205-226 47-68 (260)
90 2ihy_A ABC transporter, ATP-bi 96.7 0.00098 3.4E-08 52.8 3.1 22 205-226 48-69 (279)
91 3hu3_A Transitional endoplasmi 96.7 0.0015 5E-08 56.0 4.3 51 177-227 204-261 (489)
92 1sq5_A Pantothenate kinase; P- 96.6 0.0013 4.6E-08 52.7 3.9 25 202-226 78-102 (308)
93 3m6a_A ATP-dependent protease 96.6 0.0011 3.9E-08 57.5 3.5 49 178-226 82-130 (543)
94 3t15_A Ribulose bisphosphate c 96.6 0.0013 4.6E-08 52.3 3.7 25 202-226 34-58 (293)
95 3dm5_A SRP54, signal recogniti 96.6 0.0033 1.1E-07 52.9 5.9 23 203-225 99-121 (443)
96 2v3c_C SRP54, signal recogniti 96.6 0.0017 5.9E-08 54.6 4.1 40 186-225 78-120 (432)
97 1um8_A ATP-dependent CLP prote 96.5 0.0022 7.7E-08 52.8 4.6 49 178-226 22-94 (376)
98 2j37_W Signal recognition part 96.5 0.0031 1.1E-07 54.1 5.5 40 186-225 80-122 (504)
99 3kl4_A SRP54, signal recogniti 96.5 0.0037 1.3E-07 52.6 5.5 23 203-225 96-118 (433)
100 2z4s_A Chromosomal replication 96.4 0.0033 1.1E-07 53.1 5.2 23 204-226 130-152 (440)
101 2ce7_A Cell division protein F 96.4 0.0033 1.1E-07 53.6 5.1 50 177-226 16-71 (476)
102 4b4t_K 26S protease regulatory 96.4 0.0032 1.1E-07 52.8 5.0 50 177-226 172-228 (428)
103 1g8p_A Magnesium-chelatase 38 96.4 0.0015 5.1E-08 53.0 2.8 44 177-226 24-67 (350)
104 2bbs_A Cystic fibrosis transme 96.4 0.0017 5.8E-08 51.7 3.0 22 205-226 65-86 (290)
105 3nh6_A ATP-binding cassette SU 96.4 0.0013 4.6E-08 52.7 2.4 23 204-226 80-102 (306)
106 2v9p_A Replication protein E1; 96.4 0.002 6.8E-08 51.7 3.2 22 204-225 126-147 (305)
107 4b4t_L 26S protease subunit RP 96.4 0.0044 1.5E-07 52.1 5.4 50 177-226 181-237 (437)
108 4b4t_M 26S protease regulatory 96.3 0.0034 1.2E-07 52.7 4.6 50 177-226 181-237 (434)
109 3zvl_A Bifunctional polynucleo 96.3 0.0023 7.9E-08 53.6 3.5 26 202-227 256-281 (416)
110 1ls1_A Signal recognition part 96.3 0.0024 8.2E-08 51.0 3.4 22 204-225 98-119 (295)
111 1tq4_A IIGP1, interferon-induc 96.3 0.0023 7.9E-08 53.5 3.4 24 203-226 68-91 (413)
112 3tui_C Methionine import ATP-b 96.3 0.0023 7.7E-08 52.6 3.2 21 205-225 55-75 (366)
113 1j8m_F SRP54, signal recogniti 96.3 0.0039 1.3E-07 49.8 4.5 22 204-225 98-119 (297)
114 3end_A Light-independent proto 96.3 0.0027 9.2E-08 50.8 3.6 23 202-224 39-61 (307)
115 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0025 8.5E-08 49.4 3.3 22 205-226 40-61 (262)
116 4b4t_J 26S protease regulatory 96.3 0.0035 1.2E-07 52.1 4.1 50 177-226 148-204 (405)
117 3k1j_A LON protease, ATP-depen 96.2 0.0033 1.1E-07 55.3 4.2 41 178-226 42-82 (604)
118 2dhr_A FTSH; AAA+ protein, hex 96.2 0.0036 1.2E-07 53.7 4.2 49 177-226 31-86 (499)
119 2qm8_A GTPase/ATPase; G protei 96.2 0.0058 2E-07 49.7 5.3 24 202-225 53-76 (337)
120 1z47_A CYSA, putative ABC-tran 96.2 0.0028 9.5E-08 51.9 3.2 21 205-225 42-62 (355)
121 2qgz_A Helicase loader, putati 96.2 0.0045 1.5E-07 49.7 4.4 41 183-226 134-174 (308)
122 4b4t_H 26S protease regulatory 96.2 0.0055 1.9E-07 51.7 5.0 50 177-226 209-265 (467)
123 2yv5_A YJEQ protein; hydrolase 96.2 0.0046 1.6E-07 49.5 4.3 32 185-225 155-186 (302)
124 2www_A Methylmalonic aciduria 96.2 0.0035 1.2E-07 51.2 3.7 23 203-225 73-95 (349)
125 1cr0_A DNA primase/helicase; R 96.1 0.003 1E-07 50.2 3.1 22 204-225 35-56 (296)
126 2p67_A LAO/AO transport system 96.1 0.0065 2.2E-07 49.4 5.1 24 202-225 54-77 (341)
127 3cf2_A TER ATPase, transitiona 96.1 0.0086 2.9E-07 54.2 6.1 51 177-227 204-261 (806)
128 1svm_A Large T antigen; AAA+ f 96.1 0.0054 1.9E-07 50.6 4.4 24 203-226 168-191 (377)
129 1lw7_A Transcriptional regulat 96.1 0.0034 1.2E-07 51.6 3.2 22 204-225 170-191 (365)
130 1mky_A Probable GTP-binding pr 96.0 0.0096 3.3E-07 50.2 6.0 48 180-227 151-203 (439)
131 1v43_A Sugar-binding transport 96.0 0.0036 1.2E-07 51.6 3.2 21 205-225 38-58 (372)
132 1h65_A Chloroplast outer envel 96.0 0.0082 2.8E-07 47.0 5.1 26 203-228 38-63 (270)
133 1g41_A Heat shock protein HSLU 96.0 0.0077 2.6E-07 50.8 5.1 50 177-226 15-72 (444)
134 3a8t_A Adenylate isopentenyltr 96.0 0.0054 1.9E-07 49.7 4.0 23 204-226 40-62 (339)
135 2obl_A ESCN; ATPase, hydrolase 96.0 0.0037 1.3E-07 51.1 2.9 22 205-226 72-93 (347)
136 2g3y_A GTP-binding protein GEM 95.9 0.0051 1.7E-07 46.5 3.5 23 204-226 37-59 (211)
137 1pzn_A RAD51, DNA repair and r 95.9 0.0046 1.6E-07 50.5 3.3 24 202-225 129-152 (349)
138 3def_A T7I23.11 protein; chlor 95.9 0.0097 3.3E-07 46.4 5.1 25 203-227 35-59 (262)
139 1tue_A Replication protein E1; 95.9 0.0071 2.4E-07 45.5 4.0 36 186-226 45-80 (212)
140 2vhj_A Ntpase P4, P4; non- hyd 95.9 0.0051 1.7E-07 49.6 3.4 23 204-226 123-145 (331)
141 1u0l_A Probable GTPase ENGC; p 95.9 0.0082 2.8E-07 48.0 4.7 33 185-226 159-191 (301)
142 3pxi_A Negative regulator of g 95.9 0.0063 2.2E-07 54.9 4.4 50 177-226 491-543 (758)
143 1p9r_A General secretion pathw 95.9 0.0097 3.3E-07 49.8 5.2 23 204-226 167-189 (418)
144 2qag_B Septin-6, protein NEDD5 95.9 0.0041 1.4E-07 52.1 2.8 20 207-226 45-64 (427)
145 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0047 1.6E-07 53.5 3.2 22 205-226 313-334 (538)
146 3jvv_A Twitching mobility prot 95.8 0.0083 2.8E-07 49.2 4.5 21 205-225 124-144 (356)
147 2gza_A Type IV secretion syste 95.8 0.0042 1.4E-07 51.0 2.6 22 205-226 176-197 (361)
148 2ewv_A Twitching motility prot 95.8 0.0055 1.9E-07 50.6 3.3 22 204-225 136-157 (372)
149 2npi_A Protein CLP1; CLP1-PCF1 95.8 0.004 1.4E-07 52.8 2.5 22 205-226 139-160 (460)
150 3gd7_A Fusion complex of cysti 95.8 0.0052 1.8E-07 51.0 3.1 21 205-225 48-68 (390)
151 2qtf_A Protein HFLX, GTP-bindi 95.8 0.0058 2E-07 50.3 3.3 26 202-227 177-202 (364)
152 3ozx_A RNAse L inhibitor; ATP 95.8 0.0051 1.7E-07 53.3 3.1 22 205-226 295-316 (538)
153 2ffh_A Protein (FFH); SRP54, s 95.8 0.0063 2.2E-07 51.0 3.6 22 204-225 98-119 (425)
154 2rcn_A Probable GTPase ENGC; Y 95.7 0.0057 2E-07 50.1 3.2 22 205-226 216-237 (358)
155 1yqt_A RNAse L inhibitor; ATP- 95.7 0.0057 1.9E-07 53.0 3.2 22 205-226 48-69 (538)
156 3cr8_A Sulfate adenylyltranfer 95.7 0.0046 1.6E-07 53.6 2.5 23 204-226 369-391 (552)
157 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.0049 1.7E-07 50.0 2.5 22 205-226 172-193 (330)
158 3bk7_A ABC transporter ATP-bin 95.6 0.0063 2.2E-07 53.5 3.2 22 205-226 383-404 (607)
159 2axn_A 6-phosphofructo-2-kinas 95.6 0.0081 2.8E-07 51.8 3.7 22 204-225 35-56 (520)
160 2e87_A Hypothetical protein PH 95.5 0.0091 3.1E-07 48.9 3.7 25 203-227 166-190 (357)
161 2hjg_A GTP-binding protein ENG 95.5 0.021 7.2E-07 48.0 6.0 48 180-227 150-198 (436)
162 2qag_A Septin-2, protein NEDD5 95.5 0.0068 2.3E-07 49.8 2.9 23 205-227 38-60 (361)
163 3j16_B RLI1P; ribosome recycli 95.5 0.0072 2.5E-07 53.1 3.2 22 205-226 379-400 (608)
164 1r6b_X CLPA protein; AAA+, N-t 95.5 0.0093 3.2E-07 53.8 4.0 49 178-226 459-510 (758)
165 4b4t_I 26S protease regulatory 95.5 0.017 5.6E-07 48.4 5.0 50 177-226 182-238 (437)
166 2dpy_A FLII, flagellum-specifi 95.4 0.0077 2.6E-07 50.8 2.9 22 205-226 158-179 (438)
167 1qvr_A CLPB protein; coiled co 95.4 0.014 4.8E-07 53.4 4.8 49 178-226 559-610 (854)
168 3bk7_A ABC transporter ATP-bin 95.4 0.0081 2.8E-07 52.8 3.1 23 204-226 117-139 (607)
169 3j16_B RLI1P; ribosome recycli 95.4 0.0086 2.9E-07 52.6 3.2 23 204-226 103-125 (608)
170 1t9h_A YLOQ, probable GTPase E 95.4 0.004 1.4E-07 49.9 1.0 22 205-226 174-195 (307)
171 1bif_A 6-phosphofructo-2-kinas 95.4 0.011 3.6E-07 50.4 3.6 23 204-226 39-61 (469)
172 3lda_A DNA repair protein RAD5 95.2 0.012 4.2E-07 48.9 3.6 22 204-225 178-199 (400)
173 3cnl_A YLQF, putative uncharac 95.2 0.022 7.4E-07 44.6 4.7 35 186-227 88-122 (262)
174 1ypw_A Transitional endoplasmi 95.2 0.01 3.5E-07 53.9 3.2 50 177-226 477-533 (806)
175 3b60_A Lipid A export ATP-bind 95.2 0.0098 3.3E-07 52.0 3.0 23 204-226 369-391 (582)
176 3fkq_A NTRC-like two-domain pr 95.2 0.015 5.1E-07 47.9 3.9 24 201-224 140-164 (373)
177 3hr8_A Protein RECA; alpha and 95.2 0.012 4.2E-07 48.1 3.3 24 202-225 59-82 (356)
178 1g8f_A Sulfate adenylyltransfe 95.2 0.019 6.4E-07 49.3 4.5 25 202-226 393-417 (511)
179 3b5x_A Lipid A export ATP-bind 95.1 0.011 3.7E-07 51.7 3.1 23 204-226 369-391 (582)
180 1m8p_A Sulfate adenylyltransfe 95.1 0.027 9.3E-07 49.1 5.5 25 202-226 394-418 (573)
181 1u0j_A DNA replication protein 95.1 0.028 9.7E-07 44.0 5.0 35 188-226 92-126 (267)
182 2zr9_A Protein RECA, recombina 95.0 0.012 4.2E-07 48.0 2.7 23 203-225 60-82 (349)
183 1udx_A The GTP-binding protein 94.9 0.0099 3.4E-07 49.7 2.1 24 204-227 157-180 (416)
184 2yl4_A ATP-binding cassette SU 94.9 0.0098 3.4E-07 52.2 2.1 23 204-226 370-392 (595)
185 2oap_1 GSPE-2, type II secreti 94.8 0.021 7E-07 49.1 3.9 22 205-226 261-282 (511)
186 1tf7_A KAIC; homohexamer, hexa 94.8 0.015 5E-07 50.2 3.0 21 204-224 39-59 (525)
187 3szr_A Interferon-induced GTP- 94.8 0.016 5.4E-07 51.0 3.2 25 202-226 43-67 (608)
188 1x6v_B Bifunctional 3'-phospho 94.8 0.022 7.5E-07 50.1 4.0 24 203-226 51-74 (630)
189 3o47_A ADP-ribosylation factor 94.8 0.02 6.9E-07 46.3 3.5 23 205-227 166-188 (329)
190 3qf4_B Uncharacterized ABC tra 94.7 0.012 4.2E-07 51.6 2.3 23 204-226 381-403 (598)
191 1v5w_A DMC1, meiotic recombina 94.7 0.038 1.3E-06 44.9 4.9 25 202-226 120-144 (343)
192 1f5n_A Interferon-induced guan 94.7 0.031 1.1E-06 48.8 4.6 26 202-227 36-61 (592)
193 3f9v_A Minichromosome maintena 94.6 0.014 4.6E-07 51.3 2.3 21 206-226 329-349 (595)
194 4a82_A Cystic fibrosis transme 94.6 0.011 3.9E-07 51.5 1.8 22 204-225 367-388 (578)
195 3qf4_A ABC transporter, ATP-bi 94.5 0.015 5E-07 51.0 2.3 22 204-225 369-390 (587)
196 1tf7_A KAIC; homohexamer, hexa 94.5 0.019 6.5E-07 49.5 3.0 22 204-225 281-302 (525)
197 2iw3_A Elongation factor 3A; a 94.5 0.021 7.3E-07 52.7 3.2 21 205-225 462-482 (986)
198 2wkq_A NPH1-1, RAS-related C3 94.4 0.035 1.2E-06 44.3 4.1 25 203-227 154-178 (332)
199 3upu_A ATP-dependent DNA helic 94.4 0.042 1.4E-06 46.5 4.8 21 205-225 46-66 (459)
200 2gks_A Bifunctional SAT/APS ki 94.4 0.03 1E-06 48.5 3.9 24 203-226 371-394 (546)
201 2iw3_A Elongation factor 3A; a 94.3 0.016 5.5E-07 53.5 2.2 22 205-226 700-721 (986)
202 1puj_A YLQF, conserved hypothe 94.3 0.058 2E-06 42.6 5.2 25 203-227 119-143 (282)
203 3ez2_A Plasmid partition prote 94.3 0.03 1E-06 46.4 3.7 23 202-224 106-129 (398)
204 3dpu_A RAB family protein; roc 94.3 0.024 8.2E-07 49.0 3.0 25 203-227 40-64 (535)
205 1u94_A RECA protein, recombina 94.2 0.024 8.3E-07 46.4 2.9 23 203-225 62-84 (356)
206 2z43_A DNA repair and recombin 94.2 0.033 1.1E-06 44.8 3.6 22 204-225 107-128 (324)
207 2i1q_A DNA repair and recombin 94.0 0.045 1.5E-06 43.9 4.1 23 203-225 97-119 (322)
208 2qpt_A EH domain-containing pr 94.0 0.035 1.2E-06 48.2 3.6 25 203-227 64-88 (550)
209 4aby_A DNA repair protein RECN 94.0 0.012 4.2E-07 48.9 0.6 20 206-225 62-81 (415)
210 3ice_A Transcription terminati 94.0 0.03 1E-06 46.3 2.9 34 188-226 163-196 (422)
211 4dcu_A GTP-binding protein ENG 93.8 0.085 2.9E-06 44.6 5.5 47 181-227 171-218 (456)
212 3bh0_A DNAB-like replicative h 93.7 0.038 1.3E-06 44.3 3.0 22 204-225 68-89 (315)
213 3bfv_A CAPA1, CAPB2, membrane 93.7 0.089 3E-06 41.2 5.1 39 184-224 64-103 (271)
214 1lnz_A SPO0B-associated GTP-bi 93.6 0.029 9.8E-07 45.7 2.2 24 204-227 158-181 (342)
215 2r6a_A DNAB helicase, replicat 93.4 0.046 1.6E-06 46.2 3.2 22 204-225 203-224 (454)
216 3ux8_A Excinuclease ABC, A sub 93.4 0.027 9.1E-07 50.1 1.8 20 205-224 349-368 (670)
217 3g5u_A MCG1178, multidrug resi 93.4 0.042 1.4E-06 52.5 3.1 22 205-226 1060-1081(1284)
218 3cio_A ETK, tyrosine-protein k 93.3 0.054 1.9E-06 43.1 3.3 23 202-224 102-125 (299)
219 3ez9_A Para; DNA binding, wing 93.2 0.031 1E-06 46.5 1.7 23 202-224 109-132 (403)
220 3ux8_A Excinuclease ABC, A sub 93.1 0.042 1.5E-06 48.8 2.6 17 205-221 45-61 (670)
221 1ewq_A DNA mismatch repair pro 93.0 0.052 1.8E-06 48.9 3.0 21 205-225 577-597 (765)
222 3lvq_E ARF-GAP with SH3 domain 92.7 0.064 2.2E-06 45.8 3.1 24 204-227 322-345 (497)
223 1of1_A Thymidine kinase; trans 92.7 0.074 2.5E-06 43.7 3.2 24 203-226 48-71 (376)
224 1wb9_A DNA mismatch repair pro 92.7 0.061 2.1E-06 48.8 3.0 23 203-225 606-628 (800)
225 1xp8_A RECA protein, recombina 92.6 0.063 2.1E-06 44.1 2.7 22 204-225 74-95 (366)
226 3la6_A Tyrosine-protein kinase 92.6 0.082 2.8E-06 41.8 3.4 23 202-224 90-113 (286)
227 3vkw_A Replicase large subunit 92.6 0.089 3.1E-06 44.2 3.7 26 201-226 158-183 (446)
228 1sky_E F1-ATPase, F1-ATP synth 92.5 0.059 2E-06 45.6 2.6 21 206-226 153-173 (473)
229 3q5d_A Atlastin-1; G protein, 92.3 0.16 5.5E-06 42.8 5.0 25 202-226 65-89 (447)
230 3g5u_A MCG1178, multidrug resi 92.3 0.064 2.2E-06 51.3 2.8 22 204-225 416-437 (1284)
231 2q6t_A DNAB replication FORK h 92.1 0.081 2.8E-06 44.6 3.0 22 204-225 200-221 (444)
232 3geh_A MNME, tRNA modification 92.1 0.074 2.5E-06 45.1 2.7 21 206-226 226-246 (462)
233 3gee_A MNME, tRNA modification 92.1 0.062 2.1E-06 45.7 2.2 22 206-227 235-256 (476)
234 2vf7_A UVRA2, excinuclease ABC 92.0 0.032 1.1E-06 50.8 0.4 19 205-223 524-542 (842)
235 4a1f_A DNAB helicase, replicat 92.0 0.091 3.1E-06 42.6 3.0 22 204-225 46-67 (338)
236 3e1s_A Exodeoxyribonuclease V, 92.0 0.082 2.8E-06 46.1 2.9 21 205-225 205-225 (574)
237 2ygr_A Uvrabc system protein A 91.9 0.057 1.9E-06 49.8 1.8 20 205-224 669-688 (993)
238 4f4c_A Multidrug resistance pr 91.8 0.053 1.8E-06 52.0 1.6 22 205-226 1106-1127(1321)
239 4f4c_A Multidrug resistance pr 91.8 0.081 2.8E-06 50.7 2.8 23 204-226 444-466 (1321)
240 3cf2_A TER ATPase, transitiona 91.7 0.16 5.4E-06 46.1 4.4 51 177-227 477-534 (806)
241 3thx_A DNA mismatch repair pro 91.7 0.093 3.2E-06 48.4 3.0 21 204-224 662-682 (934)
242 3llm_A ATP-dependent RNA helic 91.5 0.23 7.8E-06 37.8 4.7 31 185-223 65-95 (235)
243 3thx_B DNA mismatch repair pro 91.5 0.078 2.7E-06 48.8 2.3 23 203-225 672-694 (918)
244 2r6f_A Excinuclease ABC subuni 91.4 0.054 1.8E-06 49.9 1.1 20 205-224 651-670 (972)
245 3bgw_A DNAB-like replicative h 91.3 0.11 3.8E-06 43.8 2.8 22 204-225 197-218 (444)
246 3l0o_A Transcription terminati 91.2 0.11 3.8E-06 43.0 2.7 35 187-226 163-197 (427)
247 2o8b_B DNA mismatch repair pro 91.0 0.12 4.1E-06 48.2 3.0 21 204-224 789-809 (1022)
248 2oze_A ORF delta'; para, walke 90.9 0.17 5.8E-06 39.9 3.5 13 212-224 45-57 (298)
249 3ec1_A YQEH GTPase; atnos1, at 90.9 0.18 6E-06 41.4 3.7 39 180-227 147-185 (369)
250 4ag6_A VIRB4 ATPase, type IV s 90.9 0.13 4.6E-06 42.3 3.0 21 205-225 36-56 (392)
251 2j69_A Bacterial dynamin-like 90.9 0.18 6E-06 45.1 3.9 24 204-227 69-92 (695)
252 1ny5_A Transcriptional regulat 90.7 0.26 8.8E-06 40.7 4.5 45 178-226 138-182 (387)
253 4ido_A Atlastin-1; GTPase, GTP 90.2 0.36 1.2E-05 40.7 4.9 24 202-225 65-88 (457)
254 1w36_D RECD, exodeoxyribonucle 90.0 0.16 5.5E-06 44.6 2.8 20 205-224 165-184 (608)
255 3izq_1 HBS1P, elongation facto 90.0 0.18 6.1E-06 44.3 3.2 26 202-227 165-190 (611)
256 1q57_A DNA primase/helicase; d 89.6 0.14 4.9E-06 43.7 2.2 22 204-225 242-263 (503)
257 1ko7_A HPR kinase/phosphatase; 89.5 0.2 6.9E-06 40.1 2.8 22 205-226 145-166 (314)
258 3mca_A HBS1, elongation factor 89.4 0.25 8.7E-06 43.2 3.6 24 202-225 175-198 (592)
259 3h2y_A GTPase family protein; 89.2 0.2 6.7E-06 41.1 2.6 23 205-227 161-183 (368)
260 4a9a_A Ribosome-interacting GT 88.9 0.26 8.7E-06 40.6 3.1 25 202-226 70-94 (376)
261 3pih_A Uvrabc system protein A 88.6 0.22 7.4E-06 45.9 2.6 18 205-222 611-628 (916)
262 4b3f_X DNA-binding protein smu 88.4 0.52 1.8E-05 41.6 5.0 31 183-221 192-222 (646)
263 1xzp_A Probable tRNA modificat 88.4 0.074 2.5E-06 45.3 -0.5 23 205-227 244-266 (482)
264 2ck3_D ATP synthase subunit be 87.8 0.25 8.5E-06 41.9 2.3 22 205-226 154-175 (482)
265 1fx0_B ATP synthase beta chain 87.1 0.28 9.7E-06 41.7 2.3 22 205-226 166-187 (498)
266 3dzd_A Transcriptional regulat 86.1 0.5 1.7E-05 38.7 3.3 46 177-226 129-174 (368)
267 4ad8_A DNA repair protein RECN 86.1 0.18 6.2E-06 43.3 0.6 21 205-225 61-81 (517)
268 3gqb_B V-type ATP synthase bet 86.0 0.22 7.6E-06 41.9 1.1 23 205-227 148-170 (464)
269 3zvr_A Dynamin-1; hydrolase, D 85.9 0.85 2.9E-05 41.1 4.8 42 186-227 33-74 (772)
270 2gk6_A Regulator of nonsense t 85.9 0.46 1.6E-05 41.8 3.1 19 206-224 197-215 (624)
271 1knx_A Probable HPR(Ser) kinas 85.7 0.46 1.6E-05 38.0 2.8 21 205-225 148-168 (312)
272 3cmu_A Protein RECA, recombina 85.4 0.42 1.5E-05 47.5 2.9 23 202-224 1425-1447(2050)
273 3vr4_D V-type sodium ATPase su 85.4 0.27 9.4E-06 41.4 1.4 22 206-227 153-174 (465)
274 1r5b_A Eukaryotic peptide chai 85.2 0.39 1.3E-05 40.7 2.2 23 203-225 42-64 (467)
275 2c61_A A-type ATP synthase non 85.0 0.29 9.8E-06 41.4 1.3 23 205-227 153-175 (469)
276 3vr4_A V-type sodium ATPase ca 84.6 0.51 1.7E-05 40.9 2.7 34 188-226 221-254 (600)
277 2xau_A PRE-mRNA-splicing facto 84.6 1.1 3.6E-05 40.6 4.9 33 184-224 97-129 (773)
278 3mfy_A V-type ATP synthase alp 84.4 0.37 1.3E-05 41.6 1.7 22 205-226 228-249 (588)
279 3gqb_A V-type ATP synthase alp 84.0 0.5 1.7E-05 40.8 2.4 22 205-226 222-243 (578)
280 3cmw_A Protein RECA, recombina 83.3 0.6 2.1E-05 45.7 2.9 22 204-225 732-753 (1706)
281 3cmw_A Protein RECA, recombina 83.1 0.54 1.8E-05 46.1 2.5 24 203-226 1081-1104(1706)
282 2olr_A Phosphoenolpyruvate car 83.1 0.64 2.2E-05 39.9 2.6 19 204-222 241-259 (540)
283 1ytm_A Phosphoenolpyruvate car 83.0 0.64 2.2E-05 39.9 2.6 18 205-222 236-253 (532)
284 2wjy_A Regulator of nonsense t 83.0 0.72 2.5E-05 41.8 3.1 20 205-224 372-391 (800)
285 1ii2_A Phosphoenolpyruvate car 82.8 0.65 2.2E-05 39.8 2.6 19 204-222 213-231 (524)
286 2ius_A DNA translocase FTSK; n 82.7 0.73 2.5E-05 39.5 2.9 21 204-224 167-187 (512)
287 1ihu_A Arsenical pump-driving 81.9 1.1 3.8E-05 39.0 3.8 21 204-224 327-347 (589)
288 1j3b_A ATP-dependent phosphoen 81.4 0.62 2.1E-05 39.9 2.0 18 205-222 226-243 (529)
289 1e9r_A Conjugal transfer prote 81.4 0.83 2.8E-05 38.1 2.7 21 204-224 53-73 (437)
290 2r9v_A ATP synthase subunit al 81.2 0.82 2.8E-05 39.0 2.6 23 205-227 176-199 (515)
291 2qe7_A ATP synthase subunit al 81.0 0.8 2.8E-05 39.0 2.5 22 205-226 163-185 (502)
292 3cmu_A Protein RECA, recombina 80.9 0.82 2.8E-05 45.5 2.9 23 203-225 382-404 (2050)
293 2xzl_A ATP-dependent helicase 79.7 1.1 3.8E-05 40.7 3.1 19 206-224 377-395 (802)
294 1fx0_A ATP synthase alpha chai 79.5 0.93 3.2E-05 38.7 2.4 23 205-227 164-187 (507)
295 2ck3_A ATP synthase subunit al 79.3 0.9 3.1E-05 38.8 2.3 22 205-226 163-185 (510)
296 4akg_A Glutathione S-transfera 79.3 2.1 7.1E-05 44.0 5.1 40 179-225 1588-1630(2695)
297 1azs_C GS-alpha; complex (lyas 79.1 1.1 3.8E-05 37.1 2.8 22 202-223 38-59 (402)
298 3avx_A Elongation factor TS, e 79.0 1.4 4.7E-05 41.8 3.5 25 202-226 294-318 (1289)
299 3czq_A Putative polyphosphate 77.9 2.8 9.4E-05 33.3 4.5 24 204-227 86-109 (304)
300 2vf7_A UVRA2, excinuclease ABC 77.7 1.1 3.6E-05 40.9 2.4 21 202-222 34-54 (842)
301 2qyw_A Vesicle transport throu 74.9 15 0.0005 23.9 11.5 83 28-146 17-99 (102)
302 3oaa_A ATP synthase subunit al 74.5 1.8 6.2E-05 36.9 2.8 22 205-226 163-185 (513)
303 3onj_A T-snare VTI1; helix, HA 73.7 15 0.00052 23.6 9.3 59 59-147 29-88 (97)
304 1vcs_A Vesicle transport throu 73.5 16 0.00054 23.7 10.7 86 29-151 8-93 (102)
305 2lw1_A ABC transporter ATP-bin 73.3 15 0.0005 23.2 6.4 58 28-85 24-81 (89)
306 2r6f_A Excinuclease ABC subuni 72.9 1.6 5.5E-05 40.3 2.2 19 203-221 43-61 (972)
307 4akg_A Glutathione S-transfera 72.8 1.9 6.6E-05 44.3 3.0 22 205-226 1268-1289(2695)
308 2ygr_A Uvrabc system protein A 72.7 1.6 5.6E-05 40.4 2.2 18 204-221 46-63 (993)
309 3vkg_A Dynein heavy chain, cyt 70.5 1.9 6.4E-05 45.0 2.3 41 178-225 1624-1667(3245)
310 2iut_A DNA translocase FTSK; n 69.6 2.8 9.5E-05 36.4 2.9 21 204-224 214-234 (574)
311 4ehx_A Tetraacyldisaccharide 4 68.6 2.9 9.9E-05 33.4 2.7 25 202-226 34-60 (315)
312 1w78_A FOLC bifunctional prote 68.0 7.9 0.00027 32.0 5.3 35 185-225 34-68 (422)
313 2fz4_A DNA repair protein RAD2 67.8 3.3 0.00011 31.4 2.7 19 207-225 111-129 (237)
314 3f8t_A Predicted ATPase involv 67.5 2.6 9E-05 35.8 2.3 44 179-224 215-258 (506)
315 3nrs_A Dihydrofolate:folylpoly 65.1 9.1 0.00031 31.9 5.2 35 185-225 37-71 (437)
316 4abx_A DNA repair protein RECN 63.7 37 0.0013 24.2 7.9 31 56-86 83-113 (175)
317 3czp_A Putative polyphosphate 61.6 9 0.00031 32.7 4.5 39 184-226 27-65 (500)
318 1jbw_A Folylpolyglutamate synt 61.6 8.1 0.00028 32.0 4.2 35 185-225 24-58 (428)
319 1o5z_A Folylpolyglutamate synt 61.1 9.5 0.00033 31.8 4.6 35 185-225 37-71 (442)
320 2vos_A Folylpolyglutamate synt 57.4 10 0.00036 32.1 4.2 35 185-225 49-83 (487)
321 3a7p_A Autophagy protein 16; c 57.3 46 0.0016 23.2 7.3 47 35-81 98-149 (152)
322 3b6e_A Interferon-induced heli 55.9 4.7 0.00016 29.3 1.7 18 207-224 51-68 (216)
323 3ro3_B Minsc, peptide of prote 53.0 9.9 0.00034 16.9 1.8 14 59-72 7-20 (22)
324 1lyp_A CAP18; lipopolysacchari 50.5 20 0.00069 17.0 3.1 21 125-145 8-28 (32)
325 3pp5_A BRK1, protein brick1; t 47.7 45 0.0015 20.2 6.8 45 5-49 24-68 (73)
326 3rc3_A ATP-dependent RNA helic 47.4 11 0.00037 33.5 2.8 19 204-222 155-173 (677)
327 2lf0_A Uncharacterized protein 46.7 61 0.0021 21.5 5.8 51 31-82 8-58 (123)
328 1hv8_A Putative ATP-dependent 45.8 16 0.00055 28.8 3.4 17 206-222 46-62 (367)
329 3rhf_A Putative polyphosphate 44.6 20 0.00067 28.2 3.5 23 204-226 75-97 (289)
330 2gxq_A Heat resistant RNA depe 44.3 13 0.00043 26.8 2.4 15 207-221 41-55 (207)
331 3czp_A Putative polyphosphate 43.4 26 0.00088 29.9 4.4 24 204-227 300-323 (500)
332 3p8c_E Probable protein brick1 42.3 56 0.0019 19.8 7.2 43 5-47 24-66 (75)
333 2wtz_A UDP-N-acetylmuramoyl-L- 40.8 31 0.0011 29.5 4.6 22 202-225 144-165 (535)
334 1e8c_A UDP-N-acetylmuramoylala 39.4 34 0.0012 28.9 4.6 22 202-225 106-127 (498)
335 3ckl_A Sulfotransferase family 37.9 19 0.00065 28.1 2.6 20 205-225 41-60 (298)
336 2a1d_D Staphylocoagulase; prot 37.0 81 0.0028 24.8 5.8 48 31-86 182-229 (329)
337 1kjw_A Postsynaptic density pr 36.4 15 0.00051 28.9 1.7 21 204-227 105-125 (295)
338 1qde_A EIF4A, translation init 35.8 20 0.00069 26.1 2.4 14 207-220 54-67 (224)
339 1nu7_D Staphylocoagulase; thro 35.7 1E+02 0.0035 23.8 6.1 48 31-86 182-229 (282)
340 2akf_A Coronin-1A; coiled coil 35.3 41 0.0014 16.2 2.8 16 38-53 4-19 (32)
341 3pey_A ATP-dependent RNA helic 35.1 32 0.0011 27.3 3.7 17 205-221 45-61 (395)
342 2pl3_A Probable ATP-dependent 35.0 21 0.00072 26.4 2.4 14 207-220 65-78 (236)
343 2va8_A SSO2462, SKI2-type heli 34.9 19 0.00065 31.9 2.4 19 205-223 47-65 (715)
344 3eag_A UDP-N-acetylmuramate:L- 34.8 25 0.00084 27.9 2.8 20 204-225 108-127 (326)
345 1ls6_A ARYL sulfotransferase; 34.3 23 0.0008 27.5 2.6 20 205-225 39-58 (295)
346 1rif_A DAR protein, DNA helica 33.8 20 0.00069 27.5 2.1 16 209-224 133-148 (282)
347 1aq5_A Matrilin-1, CMP, cartil 33.5 62 0.0021 17.7 4.2 36 116-151 7-42 (47)
348 1vec_A ATP-dependent RNA helic 33.4 21 0.00071 25.7 2.0 15 207-221 43-57 (206)
349 2zpt_X Tyrosine-ester sulfotra 33.3 25 0.00085 27.4 2.6 20 205-225 39-58 (295)
350 2p6r_A Afuhel308 helicase; pro 33.1 24 0.00083 31.2 2.8 17 206-222 42-58 (702)
351 1t6n_A Probable ATP-dependent 33.0 24 0.00082 25.7 2.4 16 207-222 54-69 (220)
352 1gg4_A UDP-N-acetylmuramoylala 32.5 33 0.0011 28.6 3.3 21 203-225 99-119 (452)
353 2gwh_A Sulfotransferase 1C2; s 31.8 27 0.00093 27.2 2.6 19 206-225 43-61 (298)
354 3fbt_A Chorismate mutase and s 31.7 72 0.0025 24.8 5.0 47 176-224 96-142 (282)
355 1lkx_A Myosin IE heavy chain; 30.7 30 0.001 30.8 2.9 21 205-225 95-115 (697)
356 3jyo_A Quinate/shikimate dehyd 30.4 48 0.0016 25.7 3.8 46 176-223 101-146 (283)
357 3iuy_A Probable ATP-dependent 30.3 28 0.00097 25.5 2.4 15 207-221 60-74 (228)
358 3bfx_A Sulfotransferase 1C2; P 29.6 31 0.0011 26.8 2.6 20 205-225 40-59 (296)
359 3fht_A ATP-dependent RNA helic 29.4 46 0.0016 26.6 3.7 17 205-221 65-81 (412)
360 3kb6_A D-lactate dehydrogenase 29.1 13 0.00046 29.7 0.4 15 205-219 142-156 (334)
361 4db1_A Myosin-7; S1DC, cardiac 28.9 34 0.0011 31.0 2.9 22 204-225 171-192 (783)
362 3ghg_A Fibrinogen alpha chain; 28.4 73 0.0025 27.1 4.6 24 30-53 61-84 (562)
363 1w9i_A Myosin II heavy chain; 28.4 34 0.0012 30.9 2.8 21 205-225 173-193 (770)
364 2cr7_A Paired amphipathic heli 28.4 1E+02 0.0036 18.8 5.3 25 62-86 48-72 (80)
365 1zd1_A Sulfotransferase 4A1; S 28.3 25 0.00085 27.2 1.8 20 205-225 46-65 (284)
366 2reo_A Putative sulfotransfera 28.2 34 0.0012 26.8 2.6 19 206-225 49-67 (305)
367 2zci_A Phosphoenolpyruvate car 27.9 29 0.001 30.0 2.2 21 203-223 262-282 (610)
368 1nyt_A Shikimate 5-dehydrogena 27.9 55 0.0019 25.0 3.7 45 177-223 94-138 (271)
369 3ber_A Probable ATP-dependent 27.9 33 0.0011 25.8 2.4 15 207-221 83-97 (249)
370 2zj8_A DNA helicase, putative 27.7 28 0.00095 30.9 2.2 18 205-222 40-57 (720)
371 3bor_A Human initiation factor 27.7 22 0.00077 26.4 1.4 15 207-221 70-84 (237)
372 3ly5_A ATP-dependent RNA helic 27.5 29 0.00098 26.3 2.0 16 207-222 94-109 (262)
373 4anj_A Unconventional myosin-V 27.1 36 0.0012 31.9 2.8 21 205-225 145-165 (1052)
374 1q0u_A Bstdead; DEAD protein, 26.6 27 0.00093 25.4 1.7 15 207-221 44-58 (219)
375 2qfa_C Inner centromere protei 26.4 85 0.0029 17.0 4.2 28 41-74 15-42 (47)
376 1s2m_A Putative ATP-dependent 26.3 34 0.0012 27.4 2.4 16 207-222 61-76 (400)
377 2v26_A Myosin VI; calmodulin-b 26.3 40 0.0014 30.5 2.9 21 205-225 141-161 (784)
378 1h3o_B Transcription initiatio 26.0 1.2E+02 0.004 18.5 6.1 43 43-91 9-51 (76)
379 2egg_A AROE, shikimate 5-dehyd 25.9 53 0.0018 25.6 3.3 46 176-223 114-160 (297)
380 3o8q_A Shikimate 5-dehydrogena 25.6 77 0.0026 24.5 4.2 46 176-223 100-145 (281)
381 1w7j_A Myosin VA; motor protei 25.6 41 0.0014 30.5 2.8 21 205-225 157-177 (795)
382 1goj_A Kinesin, kinesin heavy 25.5 63 0.0022 26.1 3.8 30 186-221 69-98 (355)
383 3v86_A De novo design helix; c 25.4 58 0.002 14.8 3.7 16 32-47 6-21 (27)
384 2v5c_A O-GLCNACASE NAGJ; glyco 25.3 2.4E+02 0.0082 24.5 7.6 55 30-84 487-543 (594)
385 3p8c_D Wiskott-aldrich syndrom 25.3 2.4E+02 0.0082 21.9 9.0 28 59-86 31-58 (279)
386 1dxy_A D-2-hydroxyisocaproate 25.2 26 0.00089 28.0 1.4 15 205-219 146-160 (333)
387 2g76_A 3-PGDH, D-3-phosphoglyc 25.1 21 0.00072 28.6 0.8 18 205-223 166-183 (335)
388 3fe2_A Probable ATP-dependent 24.9 38 0.0013 25.1 2.2 15 207-221 69-83 (242)
389 1wmi_B RELB, hypothetical prot 24.9 33 0.0011 19.7 1.4 41 31-71 9-50 (67)
390 2nvu_B Maltose binding protein 24.9 54 0.0018 29.6 3.6 18 205-223 412-429 (805)
391 3fmp_B ATP-dependent RNA helic 24.8 70 0.0024 26.5 4.1 17 205-221 132-148 (479)
392 3gg9_A D-3-phosphoglycerate de 24.8 21 0.00073 28.8 0.8 15 205-219 161-175 (352)
393 2ekl_A D-3-phosphoglycerate de 24.7 20 0.00069 28.3 0.7 15 205-219 143-157 (313)
394 1kk8_A Myosin heavy chain, str 24.7 44 0.0015 30.5 2.9 21 205-225 170-190 (837)
395 1g1e_B SIN3A; four-helix bundl 24.7 1.3E+02 0.0045 18.7 4.7 22 63-84 62-83 (89)
396 3d4o_A Dipicolinate synthase s 24.6 29 0.00098 27.0 1.5 17 205-221 156-172 (293)
397 1bg2_A Kinesin; motor protein, 24.5 68 0.0023 25.5 3.7 29 187-221 67-95 (325)
398 3dkp_A Probable ATP-dependent 24.4 41 0.0014 24.9 2.4 14 207-220 69-82 (245)
399 4hv4_A UDP-N-acetylmuramate--L 24.3 81 0.0028 26.5 4.4 20 204-225 122-141 (494)
400 1tu3_F RAB GTPase binding effe 24.3 95 0.0032 18.7 3.4 52 28-82 14-67 (79)
401 1g2y_A Hepatocyte nuclear fact 24.2 50 0.0017 16.3 1.8 11 214-224 20-30 (32)
402 1wrb_A DJVLGB; RNA helicase, D 24.1 42 0.0014 25.0 2.4 14 207-220 63-76 (253)
403 1g8x_A Myosin II heavy chain f 24.0 42 0.0015 31.3 2.7 21 205-225 173-193 (1010)
404 2ycu_A Non muscle myosin 2C, a 23.9 44 0.0015 31.2 2.8 21 205-225 147-167 (995)
405 2ke4_A CDC42-interacting prote 23.7 98 0.0034 19.8 3.7 26 30-55 66-91 (98)
406 1npy_A Hypothetical shikimate 23.6 98 0.0034 23.7 4.4 46 176-224 94-139 (271)
407 2fwr_A DNA repair protein RAD2 23.4 49 0.0017 27.3 2.9 18 207-224 111-128 (472)
408 2czy_A Paired amphipathic heli 23.4 1.3E+02 0.0044 18.1 4.7 23 62-84 42-64 (77)
409 3tnl_A Shikimate dehydrogenase 23.4 75 0.0026 25.1 3.7 47 176-224 128-174 (315)
410 1p77_A Shikimate 5-dehydrogena 23.2 61 0.0021 24.8 3.2 46 176-223 93-138 (272)
411 3lre_A Kinesin-like protein KI 23.0 90 0.0031 25.1 4.2 30 186-221 94-123 (355)
412 1j4a_A D-LDH, D-lactate dehydr 23.0 22 0.00074 28.4 0.5 15 205-219 147-161 (333)
413 1wwk_A Phosphoglycerate dehydr 23.0 23 0.00078 27.9 0.7 15 205-219 143-157 (307)
414 1q20_A SULT2B1B, sulfotransfer 22.7 50 0.0017 25.6 2.6 18 206-224 49-66 (299)
415 4etp_A Kinesin-like protein KA 22.6 95 0.0032 25.5 4.3 30 186-221 129-158 (403)
416 2oxc_A Probable ATP-dependent 22.6 47 0.0016 24.3 2.4 14 207-220 64-77 (230)
417 2oca_A DAR protein, ATP-depend 22.5 51 0.0018 27.5 2.8 34 182-224 115-148 (510)
418 3hn7_A UDP-N-acetylmuramate-L- 22.5 52 0.0018 28.0 2.8 20 204-225 122-141 (524)
419 2x5o_A UDP-N-acetylmuramoylala 22.4 58 0.002 26.9 3.0 20 204-225 104-123 (439)
420 3b6u_A Kinesin-like protein KI 22.4 90 0.0031 25.4 4.1 30 186-221 90-119 (372)
421 2y65_A Kinesin, kinesin heavy 22.4 78 0.0027 25.7 3.7 29 187-221 74-102 (365)
422 1xdw_A NAD+-dependent (R)-2-hy 22.3 32 0.0011 27.4 1.4 15 205-219 147-161 (331)
423 1j6u_A UDP-N-acetylmuramate-al 22.2 57 0.002 27.3 3.0 20 204-225 114-133 (469)
424 3nwn_A Kinesin-like protein KI 22.1 70 0.0024 25.8 3.4 26 188-219 95-120 (359)
425 4g65_A TRK system potassium up 22.1 74 0.0025 26.6 3.7 43 179-226 214-256 (461)
426 2vvg_A Kinesin-2; motor protei 22.0 80 0.0027 25.4 3.7 29 187-221 79-107 (350)
427 2zfi_A Kinesin-like protein KI 21.9 98 0.0033 25.0 4.2 29 187-221 79-107 (366)
428 2dfs_A Myosin-5A; myosin-V, in 21.8 53 0.0018 30.9 2.9 22 204-225 156-177 (1080)
429 1xti_A Probable ATP-dependent 21.8 47 0.0016 26.4 2.4 15 207-221 48-62 (391)
430 1am9_A Srebp-1A, protein (ster 21.6 1.5E+02 0.005 18.1 5.2 31 21-51 45-75 (82)
431 1f9v_A Kinesin-like protein KA 21.5 87 0.003 25.1 3.8 17 205-221 86-102 (347)
432 2am1_A SP protein, UDP-N-acety 21.4 34 0.0012 28.4 1.5 21 203-225 99-119 (454)
433 3tvt_A Disks large 1 tumor sup 21.3 49 0.0017 25.9 2.3 21 204-227 100-120 (292)
434 2wbe_C Bipolar kinesin KRP-130 21.3 88 0.003 25.4 3.9 30 186-221 89-118 (373)
435 1p3d_A UDP-N-acetylmuramate--a 21.2 69 0.0024 26.7 3.3 20 204-225 118-137 (475)
436 3t0q_A AGR253WP; kinesin, alph 21.2 96 0.0033 24.9 4.0 29 187-221 75-103 (349)
437 3eiq_A Eukaryotic initiation f 21.0 37 0.0013 27.2 1.6 15 207-221 80-94 (414)
438 3v1a_A Computational design, M 21.0 1.2E+02 0.004 16.7 5.3 38 38-76 6-43 (48)
439 4hy3_A Phosphoglycerate oxidor 20.8 36 0.0012 27.7 1.4 16 205-220 177-192 (365)
440 1x88_A Kinesin-like protein KI 20.7 91 0.0031 25.2 3.8 29 187-221 78-106 (359)
441 3lk7_A UDP-N-acetylmuramoylala 20.6 74 0.0025 26.4 3.4 20 204-225 112-131 (451)
442 2cho_A Glucosaminidase, hexosa 20.6 4.5E+02 0.015 23.4 8.5 51 31-81 461-514 (716)
443 4g2n_A D-isomer specific 2-hyd 20.5 38 0.0013 27.2 1.5 15 205-219 174-188 (345)
444 1t5c_A CENP-E protein, centrom 20.5 97 0.0033 24.9 3.9 28 188-221 68-95 (349)
445 2rep_A Kinesin-like protein KI 20.4 1E+02 0.0035 25.0 4.1 28 188-221 106-133 (376)
446 1gdh_A D-glycerate dehydrogena 20.3 39 0.0013 26.7 1.5 15 205-219 147-161 (320)
447 3gbj_A KIF13B protein; kinesin 20.2 1.1E+02 0.0036 24.7 4.1 29 187-221 82-110 (354)
448 4e5n_A Thermostable phosphite 20.1 30 0.001 27.6 0.8 15 205-219 146-160 (330)
No 1
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.79 E-value=2.5e-20 Score=129.15 Aligned_cols=80 Identities=28% Similarity=0.457 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc--ccCcHHHHHHHHHHHHHhhhhhhhhh
Q 037814 4 AIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKR--QVKEETVRLWLDQLRDACYDMEDVLG 81 (229)
Q Consensus 4 ~~v~~~~~~l~~~l~~~l~~~~~~~~~~~~~l~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~l~~~~yd~eD~lD 81 (229)
|+|+++++++.+. +.+++.++.+++++++.|+++|+.|++||.+++.. ...++.++.|+.+||+++||+||+||
T Consensus 1 a~v~~ll~KL~~l----l~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGEL----LTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888777 78999999999999999999999999999999987 45789999999999999999999999
Q ss_pred hhHHHH
Q 037814 82 EWNTAR 87 (229)
Q Consensus 82 ~~~~~~ 87 (229)
+|.|..
T Consensus 77 ~f~~~~ 82 (115)
T 3qfl_A 77 KFLVQV 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999765
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.26 E-value=4.5e-12 Score=110.57 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=39.8
Q ss_pred eechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 180 FGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 180 vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
|||+.++++|.++|..... ...+||+||||||+||||||+.||+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~---~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD---LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT---SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC---CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 6999999999999976532 5689999999999999999999997
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.10 E-value=3.7e-11 Score=113.38 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=42.9
Q ss_pred CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+.++||+.++++|.++|.... .+.++|+|+||||+||||||+.+|++
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 3569999999999999997654 55899999999999999999999986
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.93 E-value=1.3e-09 Score=95.69 Aligned_cols=47 Identities=28% Similarity=0.350 Sum_probs=41.6
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
+.+|||+.+++.|.++|.... .+.++|+|+||||+||||||+.+|++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 469999999999999997543 45789999999999999999999975
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.83 E-value=1.6e-09 Score=99.20 Aligned_cols=45 Identities=22% Similarity=0.080 Sum_probs=39.7
Q ss_pred ceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814 179 IFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNND 228 (229)
Q Consensus 179 ~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~ 228 (229)
.+||+.++++|.++|...+ +.+||+||||||+||||||+.+|++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~ 174 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSY 174 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhh
Confidence 4999999999999998532 36899999999999999999999753
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.33 E-value=2.2e-07 Score=77.66 Aligned_cols=51 Identities=31% Similarity=0.266 Sum_probs=36.9
Q ss_pred CcceechhhHHHHHHHh-hcCCCC--CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRL-LCESSE--ERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L-~~~~~~--~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..++||+.+++.|.++| ...... .....-+|+|+|++|+|||||++.+++.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 57999999999999998 421100 0122344444999999999999998863
No 7
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.19 E-value=1.8e-06 Score=63.86 Aligned_cols=44 Identities=23% Similarity=0.356 Sum_probs=36.9
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..++|++.+++.+.++|.... ...+-|+|..|+||||||+.+.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHH
Confidence 358999999999999987643 34567999999999999998865
No 8
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.19 E-value=1.2e-06 Score=72.33 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=39.7
Q ss_pred CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
...++||+.+++.|.++|..... ......+.|+|.+|+|||||++.+++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999874210 13356889999999999999999875
No 9
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.10 E-value=2.8e-06 Score=62.67 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=36.7
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|++.+++.+.++|.... ..-+-|+|..|+||||||+.+.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT------KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEESCGGGCHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC------CCceEEECCCCCCHHHHHHHHHH
Confidence 358999999999999996533 34567999999999999998864
No 10
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.08 E-value=2.6e-06 Score=65.38 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=37.7
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+++|++..++.|..+|..... ..++.|+|.+|+||||||+.+++
T Consensus 24 ~~~g~~~~~~~l~~~l~~~~~-----~~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLGRI-----HHAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHTCC-----CSEEEEECSTTSCHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999975432 35888999999999999999865
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.05 E-value=3.4e-06 Score=69.64 Aligned_cols=48 Identities=27% Similarity=0.319 Sum_probs=39.2
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..++||+.+++.|..+|...-. ......+-|+|.+|+||||||+.+++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999854311 13356888999999999999999875
No 12
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.02 E-value=3.7e-06 Score=69.56 Aligned_cols=50 Identities=20% Similarity=0.116 Sum_probs=39.0
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..++||+.+++.|..+|...........+.+.|+|..|+|||||++.+.+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999998753110012334899999999999999999875
No 13
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.00 E-value=5e-06 Score=68.73 Aligned_cols=48 Identities=21% Similarity=0.210 Sum_probs=38.8
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..++||+.+++.|..+|..-.. ......+-|+|.+|+||||||+.+++
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999988854211 13346899999999999999999986
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.96 E-value=6.1e-06 Score=62.43 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=37.0
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|++..++.|.+++.... ...+-|+|.+|+||||||+.+.+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999997643 23388999999999999999875
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.68 E-value=3e-05 Score=62.30 Aligned_cols=44 Identities=27% Similarity=0.312 Sum_probs=37.0
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|++..++.|.+++..+. ...+-|+|.+|+||||||+.+.+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHH
Confidence 358999999999999997654 22388999999999999998865
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.66 E-value=3.9e-05 Score=61.78 Aligned_cols=44 Identities=27% Similarity=0.284 Sum_probs=37.2
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|++..++.|..++..+. ...+-|+|..|+||||+|+.+.+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHH
Confidence 358999999999999997653 33488999999999999999875
No 17
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.64 E-value=3.6e-05 Score=54.84 Aligned_cols=46 Identities=28% Similarity=0.304 Sum_probs=34.3
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
+++|....+.++.+.+..-.. .+.. |-|+|..|+|||+||+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~---~~~~-vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE---TDIA-VWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT---CCSC-EEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhC---CCCC-EEEECCCCCCHHHHHHHHHHh
Confidence 578999999999888753221 2233 569999999999999999864
No 18
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.57 E-value=5e-05 Score=56.00 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=29.1
Q ss_pred chhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 182 REKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 182 ~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.....+.+.+++.+-.. ..-..+.|+|..|+|||||++.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34455555555543221 2246899999999999999999864
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.56 E-value=6.4e-05 Score=59.53 Aligned_cols=51 Identities=29% Similarity=0.290 Sum_probs=37.4
Q ss_pred CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+++|.+..++.|.+++...-.. ......-+-|+|.+|+||||||+.+.+.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999887431000 0022355889999999999999998753
No 20
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.52 E-value=8.3e-05 Score=63.40 Aligned_cols=44 Identities=27% Similarity=0.399 Sum_probs=35.9
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+.++|++.+++.+++.|..... .-+-++|.+|+||||||+.+.+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~------~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTK------NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS------CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999975431 2346999999999999998764
No 21
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.51 E-value=7.9e-05 Score=60.72 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=36.7
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..++.|..++..... ..+-|+|..|+||||||+.+.+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~------~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANL------PHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTC------CCEEEECSTTSSHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCC------CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999876542 2378999999999999998764
No 22
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.47 E-value=0.0001 Score=60.54 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=36.9
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+++|++..++.|..++..+.. ...+-|+|..|+||||||+.+.+
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~~-----~~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGRI-----HHAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTCC-----CSEEEEESCTTSSHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHhCCC-----CeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999975432 24678999999999999998754
No 23
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.47 E-value=7.2e-05 Score=60.76 Aligned_cols=49 Identities=27% Similarity=0.298 Sum_probs=37.9
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..++.+..++..... .......|-|+|..|+||||||+.+.+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999998865310 012345678999999999999999865
No 24
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.43 E-value=4.2e-05 Score=54.39 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=32.6
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
+++|.+..++++.+.+..-.. .... |-|+|..|+|||+||+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~---~~~~-vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK---RTSP-VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT---CSSC-EEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhC---CCCc-EEEECCCCccHHHHHHHHHHh
Confidence 578999999988888753211 1223 569999999999999998764
No 25
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.38 E-value=0.00016 Score=62.47 Aligned_cols=50 Identities=28% Similarity=0.269 Sum_probs=38.7
Q ss_pred CcceechhhHHHHHHHhhcCCC-----------CCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESS-----------EERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~-----------~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|++..++.|.+||..... ......+.+-|+|..|+||||||+.+.+
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999975110 0001346889999999999999999875
No 26
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.37 E-value=0.00012 Score=58.54 Aligned_cols=49 Identities=22% Similarity=0.199 Sum_probs=34.4
Q ss_pred cceechhhHHHHHHHhhcCC---------CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCES---------SEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~---------~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+++|.+..++.|.+++..-. -.......-+-|+|..|+||||||+.+.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 47899888888887654210 00013455788999999999999986653
No 27
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.36 E-value=0.00018 Score=57.60 Aligned_cols=51 Identities=27% Similarity=0.225 Sum_probs=37.1
Q ss_pred CcceechhhHHHHHHHhhcCC--C-----CCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCES--S-----EERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~--~-----~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+++|.+..++.|.+++...- . -.-.....|-|+|..|+||||||+.+.+.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 468999999999888774310 0 00023457889999999999999998753
No 28
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.36 E-value=0.00016 Score=57.63 Aligned_cols=50 Identities=28% Similarity=0.323 Sum_probs=36.7
Q ss_pred CcceechhhHHHHHHHhhcCCC------CCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESS------EERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~------~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..++.|.+++..... .-.....-+-|+|..|+||||||+.+.+
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999988743100 0001245778999999999999999865
No 29
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.35 E-value=0.00012 Score=59.50 Aligned_cols=48 Identities=31% Similarity=0.363 Sum_probs=34.2
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+++|.+..++.|-..+..... .......+.++|..|+||||||+.+.+
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 578887777777666543210 002356799999999999999999864
No 30
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.35 E-value=5.9e-05 Score=60.78 Aligned_cols=49 Identities=31% Similarity=0.396 Sum_probs=36.8
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|++..+..+..++..-.. .......+-|+|..|+||||||+.+.+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999888753110 002235678999999999999999865
No 31
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.34 E-value=5.6e-05 Score=61.06 Aligned_cols=47 Identities=4% Similarity=0.024 Sum_probs=37.5
Q ss_pred ceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 179 IFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 179 ~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
+.||+++.+.|...|...-. ......+-|+|.+|+|||++++.|.+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999988764321 134567789999999999999998763
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.33 E-value=0.00024 Score=58.30 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=34.5
Q ss_pred CcceechhhHHH---HHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNE---LVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~---l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..++. +.+.+.... .....+-|+|..|+||||||+.+.+
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 469999988776 455554433 2235788999999999999999864
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.33 E-value=0.00015 Score=59.54 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=36.8
Q ss_pred CcceechhhHHHHHHHhhcC---CC--C-CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCE---SS--E-ERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~---~~--~-~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..++.|.+++... .. . ......-|-|+|..|+||||||+.+.+
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998887420 00 0 002345688999999999999999865
No 34
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.29 E-value=0.00026 Score=57.25 Aligned_cols=50 Identities=28% Similarity=0.328 Sum_probs=36.8
Q ss_pred CcceechhhHHHHHHHhhcC---C---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCE---S---SEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~---~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..++.|.+++... . ........-|-++|..|+|||+||+.|.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999887210 0 00112345688999999999999999875
No 35
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.29 E-value=0.00021 Score=53.53 Aligned_cols=41 Identities=24% Similarity=0.069 Sum_probs=28.5
Q ss_pred hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
...+.+.+++...... .....+-|+|.+|+||||||+.+++
T Consensus 36 ~~~~~~~~~~~~~~~~--~~~~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 36 KAIRFAERFVAEYEPG--KKMKGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp HHHHHHHHHHHHCCSS--CCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhc--cCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3445666666544210 1126788999999999999999875
No 36
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.29 E-value=0.0002 Score=57.31 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=36.3
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|++..++.|.+++..+. ...+-++|..|+||||+|+.+.+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC------CCCEEEESSSSSSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCC------CCeEEEECcCCcCHHHHHHHHHH
Confidence 358999999999999886543 23388999999999999998864
No 37
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.25 E-value=0.00028 Score=55.32 Aligned_cols=50 Identities=32% Similarity=0.355 Sum_probs=33.9
Q ss_pred CcceechhhHHHHHHHhhcCCCC------CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSE------ERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~------~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..++.|.+++..-..+ ......-+-|+|..|+||||||+.+.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 46899998888888765410000 001112266999999999999999875
No 38
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.21 E-value=0.00018 Score=58.65 Aligned_cols=44 Identities=23% Similarity=0.169 Sum_probs=34.6
Q ss_pred CcceechhhHHHHHHHh-hcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRL-LCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L-~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+...+.+..++ ..+. ... +.|+|..|+|||||++.+.+
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHH
Confidence 35899999999888887 4332 123 89999999999999998754
No 39
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.21 E-value=0.00038 Score=53.19 Aligned_cols=43 Identities=21% Similarity=0.188 Sum_probs=29.8
Q ss_pred cceec---hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGR---EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~---~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+++|. +...+.+..++... ....+-|+|..|+||||||+.+.+
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHH
Confidence 45652 34555666655432 246788999999999999998864
No 40
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.20 E-value=0.00036 Score=56.52 Aligned_cols=50 Identities=30% Similarity=0.306 Sum_probs=36.4
Q ss_pred CcceechhhHHHHHHHhhcC----C-C-CCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCE----S-S-EERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~----~-~-~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..++.|.+.+... + . ......+-|-++|..|+|||+||+.+.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 46899999999888776310 0 0 0012346788999999999999999875
No 41
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.20 E-value=0.00025 Score=60.12 Aligned_cols=44 Identities=25% Similarity=0.288 Sum_probs=35.0
Q ss_pred CcceechhhH---HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEK---NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~---~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..+ ..|...+..+. +..+-|+|..|+||||||+.+.+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~------~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH------LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC------CCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC------CcEEEEECCCCCcHHHHHHHHHH
Confidence 3588888777 66777776543 46788999999999999999875
No 42
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.19 E-value=0.00024 Score=65.02 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=36.4
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+.++|++.++..++++|.... ..-+-++|.+|+||||||+.+.+
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHH
Confidence 358999999999999997643 23457999999999999998764
No 43
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.17 E-value=0.00028 Score=55.01 Aligned_cols=50 Identities=28% Similarity=0.321 Sum_probs=33.1
Q ss_pred CcceechhhHHHHHHHh---hcCCCC---CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRL---LCESSE---ERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L---~~~~~~---~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..++.|.+++ .....- ......-+.|+|..|+||||||+.+.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 46899988888776553 221100 001123377999999999999999865
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.17 E-value=0.00039 Score=56.08 Aligned_cols=46 Identities=24% Similarity=0.181 Sum_probs=38.3
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+++|.+..++.|.+++..+.. ..++-+.|..|+||||||+.+.+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~-----~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKI-----PHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCC-----CSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCC-----CeEEEeeCcCCCCHHHHHHHHHHH
Confidence 4689999999999999985532 367888899999999999998753
No 45
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.15 E-value=0.00036 Score=63.02 Aligned_cols=44 Identities=27% Similarity=0.413 Sum_probs=36.2
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..++|++.+++.++++|..... .. +-++|.+|+||||+|+.+.+
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~-----~~-vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTK-----NN-PVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS-----CE-EEEESCTTTTTHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCC-----CC-eEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999976432 23 56999999999999998754
No 46
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.13 E-value=0.00027 Score=56.34 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=35.4
Q ss_pred CcceechhhHHHHHHHhhcC--CCC------CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCE--SSE------ERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~--~~~------~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..++|.+..++.|...+... ... ......-+-|+|..|+||||||+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35899999999998877541 000 001234566999999999999999864
No 47
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.13 E-value=0.00044 Score=62.40 Aligned_cols=44 Identities=32% Similarity=0.363 Sum_probs=36.4
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..++|++.+++.+++.|.... ..-+-|+|..|+||||||+.+.+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHH
Confidence 358999999999999997543 23457999999999999998764
No 48
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.11 E-value=0.00081 Score=52.82 Aligned_cols=47 Identities=19% Similarity=0.122 Sum_probs=33.3
Q ss_pred CcceechhhHHHHHH-------HhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVN-------RLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~-------~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..++|.....+.++. .+.... .....-+-|+|..|+||||||+.+.+
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 357788777666665 332111 13457788999999999999999865
No 49
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.11 E-value=0.0006 Score=54.49 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=36.3
Q ss_pred cceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|.+..++.|...+.... .........+.++|..|+||||||+.+.+
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 47888888888887775431 00113356899999999999999998764
No 50
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.09 E-value=0.00045 Score=52.54 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.1
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhc
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
...+|.|+|.+|+|||||+..+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999988754
No 51
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.07 E-value=0.00044 Score=56.28 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=34.7
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+++|.+..++.|..++..+. +.-+.++|..|+||||||+.+.+
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHH
Confidence 57898888888888887554 22388999999999999998754
No 52
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.04 E-value=0.00067 Score=53.61 Aligned_cols=49 Identities=29% Similarity=0.291 Sum_probs=32.6
Q ss_pred CcceechhhHHHHHHHhhcC--CC------CCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCE--SS------EERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~--~~------~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++.|.++.++.|.+.+... .. +-...-. +.++|..|+||||||+.+.+
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHH
Confidence 46889998888887654210 00 0011223 99999999999999999864
No 53
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.03 E-value=0.00042 Score=50.09 Aligned_cols=21 Identities=38% Similarity=0.368 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|+|..|.|||||++.+.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~ 54 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGML 54 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999999875
No 54
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.03 E-value=0.00052 Score=56.97 Aligned_cols=51 Identities=29% Similarity=0.314 Sum_probs=37.1
Q ss_pred CcceechhhHHHHHHHhhcCCC------CCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESS------EERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~------~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+++|.+..++.|.+++..... .-.....-|-|+|..|+|||+||+.|.+.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4699999999999988732100 00012356789999999999999998653
No 55
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.02 E-value=0.00073 Score=54.61 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=28.4
Q ss_pred hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
......+..-+.... ......||+|.|..|+|||||++.+.
T Consensus 73 ~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 73 RQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp HHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred hHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 334444444444432 12567899999999999999999874
No 56
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.00077 Score=49.73 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.1
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.....|.|+|..|+|||||...+.+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44567899999999999999988764
No 57
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.01 E-value=0.0006 Score=52.97 Aligned_cols=49 Identities=31% Similarity=0.374 Sum_probs=31.7
Q ss_pred CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..+..+.++...-... -..... +.|+|..|+|||||++.+.+
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHH
Confidence 46889877766665543211000 001123 88999999999999999875
No 58
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.01 E-value=0.00064 Score=55.79 Aligned_cols=50 Identities=28% Similarity=0.324 Sum_probs=35.9
Q ss_pred CcceechhhHHHHHHHhhcC----C--CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCE----S--SEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~----~--~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..++.|.+.+... . .......+-|-|+|..|+|||+||+.+.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 46899999999998877321 0 00012234577999999999999999875
No 59
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.99 E-value=0.00054 Score=55.19 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.4
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..-.+|+|+|..|+|||||++.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHH
Confidence 446899999999999999999875
No 60
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.98 E-value=0.00071 Score=55.58 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=34.9
Q ss_pred cceechhhHHHHHHHhhcC-------C--CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCE-------S--SEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~-------~--~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|.+..++.|...+... . .........|-++|..|+|||+||+.+.+
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3789998888888777210 0 00012346788999999999999999865
No 61
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.97 E-value=0.001 Score=53.62 Aligned_cols=37 Identities=30% Similarity=0.117 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
...+..++.... .....+-|+|..|+||||||+.+.+
T Consensus 23 ~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 23 YEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp HHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 344555554332 2346788999999999999999875
No 62
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.97 E-value=0.00027 Score=50.58 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..+.|+|..|+|||||++.+++
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999875
No 63
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.96 E-value=0.00082 Score=54.53 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+.-.+|+|+|..|+|||||++.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 446899999999999999998864
No 64
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.94 E-value=0.0012 Score=54.21 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..-.||+|+|..|+|||||++.+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHH
Confidence 346799999999999999999875
No 65
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.92 E-value=0.00079 Score=56.97 Aligned_cols=50 Identities=30% Similarity=0.306 Sum_probs=36.8
Q ss_pred CcceechhhHHHHHHHhhcC----C-C-CCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCE----S-S-EERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~----~-~-~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..++.|.+++... . . ......+-|-++|..|+|||+||+.+.+
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998877310 0 0 0012346788999999999999999875
No 66
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.91 E-value=0.0013 Score=56.11 Aligned_cols=24 Identities=42% Similarity=0.592 Sum_probs=21.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..-.||+|+|..|+|||||++.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHH
Confidence 346799999999999999999875
No 67
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.89 E-value=0.00062 Score=54.66 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.5
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+-.+|+|+|.+|+|||||++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 35799999999999999999875
No 68
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.86 E-value=0.0015 Score=52.49 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.0
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
....+|.|+|.+|+||||++..+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHH
Confidence 446899999999999999998764
No 69
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.85 E-value=0.0014 Score=53.74 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
...+++.|.... .+..+|+|+|.+|+|||||+..+.
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHH
Confidence 444555554332 457899999999999999998763
No 70
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.83 E-value=0.00073 Score=54.65 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=34.0
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|.+..++.+...+..+. -+-++|..|+|||+||+.+.+
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHH
Confidence 57899999998888886532 467899999999999998764
No 71
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.82 E-value=0.0018 Score=52.37 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=20.9
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
....+|+|+|.+|+||||++..+.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999998763
No 72
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.81 E-value=0.00093 Score=52.72 Aligned_cols=49 Identities=31% Similarity=0.374 Sum_probs=32.2
Q ss_pred CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..+.++.++...-... -..... +.|+|..|+|||||++.+.+
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHH
Confidence 46889887777665543211000 001123 88999999999999999875
No 73
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.80 E-value=0.0015 Score=55.43 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=33.5
Q ss_pred CcceechhhHHHHHHHh---hcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRL---LCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L---~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..++.+..++ ..+. ...+-+-++|.+|+|||+||+.+.+
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKK----MAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCC----CCCCeEEEECCCcCCHHHHHHHHHH
Confidence 56999999888655544 3332 2234577999999999999998764
No 74
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.79 E-value=0.0018 Score=54.60 Aligned_cols=41 Identities=29% Similarity=0.371 Sum_probs=28.2
Q ss_pred hHHHHHHHhhcCCCC---CCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 185 EKNELVNRLLCESSE---ERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 185 ~~~~l~~~L~~~~~~---~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-.++|.++|.....+ ...+.++|.|+|.+|+||||++-.+-
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 355666666543211 12457899999999999999987653
No 75
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.79 E-value=0.00088 Score=53.71 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=20.5
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-.+++|+|..|+|||||++.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 35799999999999999999875
No 76
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.76 E-value=0.0011 Score=60.30 Aligned_cols=51 Identities=27% Similarity=0.274 Sum_probs=37.3
Q ss_pred CcceechhhHHHHHHHhhc----CCC---CCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLC----ESS---EERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~----~~~---~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+++|.+..+++|.+++.. .+- -.-..-.-|.|+|..|+||||||+.+.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4689999999999888753 000 00123456889999999999999998753
No 77
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.75 E-value=0.00097 Score=52.86 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.0
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
....+|+|.|+.|+||||+|+.+-
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 446899999999999999999863
No 78
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.75 E-value=0.00077 Score=52.93 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 6999999999999999998753
No 79
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.75 E-value=0.00067 Score=51.58 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.0
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||.+.+..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998863
No 80
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.73 E-value=0.00089 Score=53.53 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=20.1
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-.+|+|+|.+|+||||++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999998763
No 81
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.72 E-value=0.00088 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5999999999999999999864
No 82
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.72 E-value=0.001 Score=53.67 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=19.3
Q ss_pred CCCEEEEEecCCCCcHHHHHHHH
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+.+||+|.|=|||||||.+-.+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNL 68 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNL 68 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHH
Confidence 45799999999999999987643
No 83
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.71 E-value=0.00087 Score=52.42 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||.+.+..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5999999999999999998863
No 84
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.70 E-value=0.0009 Score=52.04 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.0
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5999999999999999998753
No 85
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.70 E-value=0.0016 Score=55.93 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=34.0
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|.+..++.+...+..+. -|-++|.+|+|||+||+.+.+
T Consensus 23 ~ivGq~~~i~~l~~al~~~~--------~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC--------EEEEECCSSSSHHHHHHHGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC--------eeEeecCchHHHHHHHHHHHH
Confidence 47899988888888776543 567999999999999999865
No 86
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.69 E-value=0.0009 Score=52.64 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=19.6
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|+|..|+|||||++.+.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 699999999999999999875
No 87
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.69 E-value=0.00091 Score=52.76 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6999999999999999998863
No 88
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.67 E-value=0.00078 Score=52.50 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+|.|+|+.|+|||||++.+-
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999874
No 89
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.67 E-value=0.00098 Score=52.25 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=20.0
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5999999999999999998753
No 90
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.66 E-value=0.00098 Score=52.80 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||.+.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999998863
No 91
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.65 E-value=0.0015 Score=55.99 Aligned_cols=51 Identities=29% Similarity=0.292 Sum_probs=36.6
Q ss_pred CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+++|.+..+++|.+++...-.. ......-|-|+|..|+|||+||+.+.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999998887532000 0022345779999999999999998753
No 92
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.64 E-value=0.0013 Score=52.74 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=21.5
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..-.+|+|+|..|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3357999999999999999998753
No 93
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.63 E-value=0.0011 Score=57.46 Aligned_cols=49 Identities=31% Similarity=0.386 Sum_probs=34.4
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+++|.++-+..+.+.+.-..-...-.-.++.++|..|+||||||+.+.+
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5789888888776554321100012356899999999999999999864
No 94
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.62 E-value=0.0013 Score=52.34 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=21.3
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+....+-++|.+|+|||+||+.|.+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456788999999999999999875
No 95
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.57 E-value=0.0033 Score=52.90 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.1
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+..||.|+|.+|+||||++..+-
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 47899999999999999987653
No 96
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.55 E-value=0.0017 Score=54.63 Aligned_cols=40 Identities=40% Similarity=0.397 Sum_probs=26.8
Q ss_pred HHHHHHHhhcCCCC---CCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 186 KNELVNRLLCESSE---ERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 186 ~~~l~~~L~~~~~~---~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+.|.++|.....+ ...+..+|.|+|.+|+||||++..+-
T Consensus 78 ~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 78 YEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp HHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHH
T ss_pred HHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 45566666433110 11335799999999999999988753
No 97
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.54 E-value=0.0022 Score=52.79 Aligned_cols=49 Identities=29% Similarity=0.289 Sum_probs=33.7
Q ss_pred cceechhhHHHHHHHhhc----CC--------------------CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLC----ES--------------------SEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~----~~--------------------~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|.+..++.|...+.. .. .........+-++|..|+||||||+.+.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 478988888888776620 00 00012234677999999999999999864
No 98
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.53 E-value=0.0031 Score=54.08 Aligned_cols=40 Identities=28% Similarity=0.272 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCCC---CCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 186 KNELVNRLLCESSE---ERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 186 ~~~l~~~L~~~~~~---~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.++|.++|...... ...+..+|+|+|.+|+|||||+..+-
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 44555655432211 11457899999999999999998764
No 99
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.47 E-value=0.0037 Score=52.57 Aligned_cols=23 Identities=52% Similarity=0.496 Sum_probs=20.3
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
...||.++|.+|+||||++..+-
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999988763
No 100
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.45 E-value=0.0033 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.280 Sum_probs=20.9
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..-+-|+|..|+||||||+.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 56789999999999999999875
No 101
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.44 E-value=0.0033 Score=53.58 Aligned_cols=50 Identities=30% Similarity=0.315 Sum_probs=33.4
Q ss_pred CcceechhhHHHHHHHhhcCCCC------CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSE------ERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~------~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..+++|.+++..-..+ ...-.+-|-|+|..|+||||||+.|.+
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 46899998888777654321000 001112367999999999999999875
No 102
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0032 Score=52.83 Aligned_cols=50 Identities=26% Similarity=0.344 Sum_probs=36.0
Q ss_pred CcceechhhHHHHHHHhhcC--CCC-----CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCE--SSE-----ERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~--~~~-----~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++.|.+..++.|.+.+... .++ .-+..+=|-++|.+|+|||+||+.|-+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999888765321 000 113345677999999999999999865
No 103
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.42 E-value=0.0015 Score=53.02 Aligned_cols=44 Identities=25% Similarity=0.222 Sum_probs=31.6
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..+..+...+..... .-|-|+|..|+|||+||+.+.+
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~------~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGI------GGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGG------CCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCCC------ceEEEECCCCccHHHHHHHHHH
Confidence 3589998866665444443221 2278999999999999999875
No 104
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.40 E-value=0.0017 Score=51.72 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||.+.+..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5999999999999999998753
No 105
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.40 E-value=0.0013 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.639 Sum_probs=20.4
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 36999999999999999998753
No 106
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.37 E-value=0.002 Score=51.67 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=20.0
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=.+++|+|..|.|||||++.+.
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4699999999999999999875
No 107
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0044 Score=52.13 Aligned_cols=50 Identities=30% Similarity=0.283 Sum_probs=36.0
Q ss_pred CcceechhhHHHHHHHhhcC--CCC-----CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCE--SSE-----ERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~--~~~-----~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++.|.+..++.|.+.+... .++ .-+..+=|-++|.+|+|||+||+.|.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 46889999998887765321 000 113356778999999999999999865
No 108
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.0034 Score=52.74 Aligned_cols=50 Identities=28% Similarity=0.367 Sum_probs=36.1
Q ss_pred CcceechhhHHHHHHHhhc----CC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLC----ES---SEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~----~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++.|.+..++.|.+.+.. .+ .-.-+..+=|-++|.+|+|||+||+.|.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 4689999999998876432 11 00113356778999999999999999865
No 109
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.33 E-value=0.0023 Score=53.63 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.4
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
....+|.|+|+.|+||||+|+.+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 44689999999999999999998653
No 110
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.31 E-value=0.0024 Score=50.98 Aligned_cols=22 Identities=41% Similarity=0.413 Sum_probs=19.7
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-.+|+|+|.+|+||||++..+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la 119 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLA 119 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999998864
No 111
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.31 E-value=0.0023 Score=53.49 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.6
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhc
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 357999999999999999999875
No 112
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.30 E-value=0.0023 Score=52.61 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.6
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|+|..|+|||||++.+.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHh
Confidence 699999999999999999875
No 113
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.29 E-value=0.0039 Score=49.80 Aligned_cols=22 Identities=50% Similarity=0.611 Sum_probs=19.8
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..+|+|+|.+|+||||++..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 6899999999999999998764
No 114
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.29 E-value=0.0027 Score=50.76 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=19.6
Q ss_pred CCCEEEEEecCCCCcHHHHHHHH
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
...+||+|+|-||+||||+|-.+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nL 61 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNL 61 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHH
Confidence 55799999999999999998764
No 115
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.29 E-value=0.0025 Score=49.45 Aligned_cols=22 Identities=36% Similarity=0.368 Sum_probs=19.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-|-|+|..|+||||||+.+.+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4466999999999999999875
No 116
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.0035 Score=52.12 Aligned_cols=50 Identities=26% Similarity=0.264 Sum_probs=35.4
Q ss_pred CcceechhhHHHHHHHhhcC--CCC-----CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCE--SSE-----ERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~--~~~-----~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++.|.+..++.|.+.+.-. .++ .-+..+=|-++|.+|+|||.||+.|-+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 46889999999887765320 000 113345677999999999999999865
No 117
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.25 E-value=0.0033 Score=55.27 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=33.9
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|.+.-++.|...+..+ ..+.|+|..|+||||||+.+..
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence 5889888888777776543 4789999999999999999864
No 118
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.23 E-value=0.0036 Score=53.65 Aligned_cols=49 Identities=33% Similarity=0.388 Sum_probs=33.1
Q ss_pred CcceechhhHHHHHHHhh---cCCC----CCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLL---CESS----EERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~---~~~~----~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..+..|.++.. .... .-..... |.|+|..|+||||||+.|.+
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~G-vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSE-EEEECSSSSSHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCce-EEEECCCCCCHHHHHHHHHH
Confidence 468999888777766542 2110 0001122 88999999999999999875
No 119
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.21 E-value=0.0058 Score=49.68 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.3
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+-.+++|+|..|+|||||.+.+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 346899999999999999999875
No 120
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.19 E-value=0.0028 Score=51.91 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.6
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|+|..|+|||||.+.+.
T Consensus 42 e~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 599999999999999999875
No 121
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.19 E-value=0.0045 Score=49.68 Aligned_cols=41 Identities=20% Similarity=0.134 Sum_probs=28.4
Q ss_pred hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
......+.+++..... ..-.-+-|+|..|+|||+||+.+.+
T Consensus 134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHH
Confidence 3344556667654321 1235678999999999999999875
No 122
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.0055 Score=51.74 Aligned_cols=50 Identities=26% Similarity=0.236 Sum_probs=35.5
Q ss_pred CcceechhhHHHHHHHhhc----CC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLC----ES---SEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~----~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+|.|.++.++.|.+.+.- .+ .-.-+..+=|-++|.+|+|||+||+.|-+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 4688999999988876422 00 00113356677999999999999999865
No 123
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.16 E-value=0.0046 Score=49.46 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=26.1
Q ss_pred hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|.+++.+ .+++|+|..|+|||||.+.+.
T Consensus 155 gi~~L~~~l~G---------~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVDYLEG---------FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHHHTTT---------CEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHhhccC---------cEEEEECCCCCCHHHHHHHHH
Confidence 36677776642 489999999999999999986
No 124
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.16 E-value=0.0035 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.9
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+..+|+|+|.+|+|||||...+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~ 95 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFG 95 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHH
Confidence 36899999999999999999875
No 125
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.14 E-value=0.003 Score=50.24 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.7
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=.+++|+|..|+|||||++.+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQA 56 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 3699999999999999999864
No 126
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.13 E-value=0.0065 Score=49.44 Aligned_cols=24 Identities=21% Similarity=0.247 Sum_probs=21.1
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+..+|+|+|.+|+|||||+..+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHH
Confidence 446899999999999999998873
No 127
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.09 E-value=0.0086 Score=54.18 Aligned_cols=51 Identities=29% Similarity=0.272 Sum_probs=36.7
Q ss_pred CcceechhhHHHHHHHhhc----CCCC---CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLC----ESSE---ERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~----~~~~---~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.++.|.+..+++|.+++.- .+-- .-...+=|-++|.+|+|||+||+.|.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999888876531 1100 1133566889999999999999999865
No 128
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.07 E-value=0.0054 Score=50.64 Aligned_cols=24 Identities=33% Similarity=0.211 Sum_probs=21.0
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhc
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-.+++|+|..|+|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356999999999999999998753
No 129
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.07 E-value=0.0034 Score=51.56 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.9
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-..++|+|..|+|||||++.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~ 191 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLA 191 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999874
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.05 E-value=0.0096 Score=50.17 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=33.6
Q ss_pred eechhhHHHHHHHhhcCC-C--C--CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 180 FGREKEKNELVNRLLCES-S--E--ERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 180 vG~~~~~~~l~~~L~~~~-~--~--~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.|.++-.+.|.+.|.... . . ......-|+|+|.+|+|||||.+.+...
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 456666777777665322 1 0 1234678999999999999999998754
No 131
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.04 E-value=0.0036 Score=51.59 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|+|..|+|||||.+.+.
T Consensus 38 e~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHH
Confidence 699999999999999999875
No 132
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.02 E-value=0.0082 Score=47.03 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYNND 228 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~d~ 228 (229)
....|.|+|..|+|||||...+++..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999987653
No 133
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.00 E-value=0.0077 Score=50.75 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=34.1
Q ss_pred CcceechhhHHHHHHHhhcC--------CCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCE--------SSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~--------~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..++|.+..++.|...+... ........+-|-++|..|+||||||+.+-+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35899988888887666321 000001234588999999999999998753
No 134
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.00 E-value=0.0054 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-++|.|+|+.|+|||||+..+-.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999998764
No 135
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.96 E-value=0.0037 Score=51.10 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||.+.+.+
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g 93 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICN 93 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6999999999999999998865
No 136
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.0051 Score=46.50 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.1
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46689999999999999998763
No 137
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.92 E-value=0.0046 Score=50.55 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+.=.++.|+|..|+|||||+..+.
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345899999999999999999875
No 138
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.92 E-value=0.0097 Score=46.40 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
+...|+|+|..|+|||||...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999998764
No 139
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.91 E-value=0.0071 Score=45.49 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
...|..|+.+ - ++-.-+-|+|.+|+||||+|..+.+
T Consensus 45 ~~~l~~~~~~-i----Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG-T----PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT-C----TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-C----CcccEEEEECCCCCCHHHHHHHHHH
Confidence 5666666653 2 3345689999999999999876653
No 140
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.90 E-value=0.0051 Score=49.59 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.9
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-+++-|+|++|+||||||.++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46778999999999999998753
No 141
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.90 E-value=0.0082 Score=47.97 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=26.6
Q ss_pred hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++++..++.. .+++|+|..|+|||||.+.+..
T Consensus 159 gv~~lf~~l~g---------eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 159 GIEELKEYLKG---------KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp THHHHHHHHSS---------SEEEEECSTTSSHHHHHHHHST
T ss_pred CHHHHHHHhcC---------CeEEEECCCCCcHHHHHHHhcc
Confidence 46677777642 4899999999999999998864
No 142
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.90 E-value=0.0063 Score=54.91 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=37.1
Q ss_pred CcceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..++|.+..++.|...+.... ......+..+-++|..|+|||+||+.+.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 358999999988887775322 11123455799999999999999998864
No 143
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.89 E-value=0.0097 Score=49.83 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-.+|+|+|..|+|||||.+.+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 37999999999999999998753
No 144
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.86 E-value=0.0041 Score=52.09 Aligned_cols=20 Identities=45% Similarity=0.670 Sum_probs=18.8
Q ss_pred EEEecCCCCcHHHHHHHHhc
Q 037814 207 ISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 207 i~IvG~gGvGKTTLa~~vy~ 226 (229)
++|+|..|+|||||.+.++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 99999999999999999874
No 145
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.84 E-value=0.0047 Score=53.49 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=20.3
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.++.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999874
No 146
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.83 E-value=0.0083 Score=49.17 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.4
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|+|..|+|||||.+.+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 599999999999999999874
No 147
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.79 E-value=0.0042 Score=51.02 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999864
No 148
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.79 E-value=0.0055 Score=50.56 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=20.0
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-.+++|+|..|+|||||++.+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999999875
No 149
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.004 Score=52.84 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999864
No 150
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.77 E-value=0.0052 Score=50.96 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.6
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|+|..|+|||||.+.+.
T Consensus 48 e~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 699999999999999999875
No 151
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.77 E-value=0.0058 Score=50.26 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=21.6
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.++.+|+|+|..|+|||||.+.+.+.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCC
Confidence 35778999999999999999988754
No 152
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.76 E-value=0.0051 Score=53.26 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.++.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999864
No 153
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.76 E-value=0.0063 Score=51.03 Aligned_cols=22 Identities=41% Similarity=0.413 Sum_probs=19.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..+|.|+|.+|+||||++..+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5799999999999999998764
No 154
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.75 E-value=0.0057 Score=50.08 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.9
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 4899999999999999998864
No 155
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.71 E-value=0.0057 Score=52.98 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+.-
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5999999999999999999864
No 156
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.67 E-value=0.0046 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.4
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-.+|.|+|+.|+|||||++.+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 37999999999999999998753
No 157
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.67 E-value=0.0049 Score=50.01 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.9
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998764
No 158
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.63 E-value=0.0063 Score=53.47 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999864
No 159
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.60 E-value=0.0081 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.9
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..+|-++|+.|.||||+|+.+.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5799999999999999999873
No 160
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.53 E-value=0.0091 Score=48.87 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.6
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
+...|+|+|..|+|||||...+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999987654
No 161
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.53 E-value=0.021 Score=48.01 Aligned_cols=48 Identities=13% Similarity=0.188 Sum_probs=32.9
Q ss_pred eechhhHHHHHHHhhcCCC-CCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 180 FGREKEKNELVNRLLCESS-EERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 180 vG~~~~~~~l~~~L~~~~~-~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.|.++-++.|.+.+..... ...+...-|+|+|.+|+|||||...+..+
T Consensus 150 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCC
Confidence 3556666666666643221 11245678999999999999999998764
No 162
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.53 E-value=0.0068 Score=49.76 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
--|+|+|..|+|||||+..++..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCC
Confidence 34699999999999999998754
No 163
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.0072 Score=53.07 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=19.9
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+.-
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5799999999999999999863
No 164
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.52 E-value=0.0093 Score=53.78 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=35.5
Q ss_pred cceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|.+..++.|...+.... .+.......+-++|..|+|||+||+.+.+
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 47898888888877664321 00113456789999999999999998754
No 165
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.017 Score=48.41 Aligned_cols=50 Identities=32% Similarity=0.334 Sum_probs=35.6
Q ss_pred CcceechhhHHHHHHHhhc----CC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLC----ES---SEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~----~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++.|.++.++.|.+.+.- .+ .-.-+..+=|-++|.+|.|||.||+.|-+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 4688999999888776532 10 00113346688999999999999999865
No 166
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.42 E-value=0.0077 Score=50.79 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+.+
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag 179 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMAR 179 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6999999999999999998864
No 167
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.41 E-value=0.014 Score=53.42 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=36.4
Q ss_pred cceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|.+..++.|...+.... .+.......+-|+|..|+|||+||+.+.+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 47899998888877775321 00113456889999999999999998864
No 168
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.41 E-value=0.0081 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|+|||||++.+.-
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 36999999999999999998863
No 169
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.0086 Score=52.60 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.4
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|+|||||.+.+..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 35999999999999999998753
No 170
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.38 E-value=0.004 Score=49.93 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4899999999999999998754
No 171
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.35 E-value=0.011 Score=50.37 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.2
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..+|.++|+.|+||||+++.+.+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999998753
No 172
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.24 E-value=0.012 Score=48.92 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=19.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=.++.|+|..|+|||||+..+.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHH
Confidence 4699999999999999999653
No 173
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.22 E-value=0.022 Score=44.57 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=26.8
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+.|.++|... +..+.|+|..|+|||||...+...
T Consensus 88 i~~L~~~l~~~-------~~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 88 KVLLKKLSFDR-------LARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp HHHHHHHCCCT-------TCEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHHHHHHh-------hhheEEeCCCCCCHHHHHHHHhcc
Confidence 56777776321 157889999999999999988754
No 174
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.21 E-value=0.01 Score=53.90 Aligned_cols=50 Identities=28% Similarity=0.251 Sum_probs=36.4
Q ss_pred CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|.+..++.|.+.+...... .-.....+.++|.+|+||||||+.+.+
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH
Confidence 46889999999988876532100 012345678999999999999999864
No 175
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.20 E-value=0.0098 Score=52.02 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|+|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 36899999999999999998753
No 176
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.20 E-value=0.015 Score=47.88 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=20.2
Q ss_pred CCCCEEEEEec-CCCCcHHHHHHHH
Q 037814 201 RKGPRIISLVG-MGGIGKTTLAQFA 224 (229)
Q Consensus 201 ~~~~~Vi~IvG-~gGvGKTTLa~~v 224 (229)
..+.++|+|+| -||+||||+|-.+
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nL 164 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAAC 164 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHH
Confidence 35689999997 7999999998654
No 177
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.18 E-value=0.012 Score=48.10 Aligned_cols=24 Identities=42% Similarity=0.505 Sum_probs=20.8
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+.=.++.|+|.+|+|||||+..+.
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 335799999999999999998875
No 178
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.17 E-value=0.019 Score=49.32 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=21.5
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+...+|.+.|+.|+||||+++.+-.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred ccceEEEecccCCCCHHHHHHHHHH
Confidence 3468999999999999999998753
No 179
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.14 E-value=0.011 Score=51.75 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999998753
No 180
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.12 E-value=0.027 Score=49.10 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=21.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..-.+|.|.|+.|+||||+|+.+-+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHH
Confidence 3457899999999999999998743
No 181
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.10 E-value=0.028 Score=43.97 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=26.1
Q ss_pred HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 188 ELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 188 ~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-+..||.... ++..-|-++|.+|.|||+||..+-+
T Consensus 92 ~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 92 VFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 4566665432 3346699999999999999998764
No 182
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.96 E-value=0.012 Score=48.01 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.1
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-.++.|+|.+|+||||||.++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAV 82 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34699999999999999998864
No 183
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=94.92 E-value=0.0099 Score=49.74 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.1
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
...|+|+|..|+|||||.+.+...
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Confidence 567999999999999999988653
No 184
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.90 E-value=0.0098 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|.|||||++.+..
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999998753
No 185
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.84 E-value=0.021 Score=49.15 Aligned_cols=22 Identities=27% Similarity=0.113 Sum_probs=19.2
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||++.+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999998753
No 186
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.82 E-value=0.015 Score=50.21 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=19.1
Q ss_pred CEEEEEecCCCCcHHHHHHHH
Q 037814 204 PRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~v 224 (229)
=.+++|+|..|+|||||++.+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 369999999999999999984
No 187
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.82 E-value=0.016 Score=51.00 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-.+..|+|+|..|+|||||.+.+..
T Consensus 43 l~lp~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 43 LALPAIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CCCCCEECCCCTTSCHHHHHHHHHS
T ss_pred ccCCeEEEECCCCChHHHHHHHHhC
Confidence 4577899999999999999998753
No 188
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.79 E-value=0.022 Score=50.10 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.9
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhc
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-.+|.|.|+.|+||||+|+.+-+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 457999999999999999998743
No 189
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=94.77 E-value=0.02 Score=46.28 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.0
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
-.|.|+|..|+|||||+..+.+.
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~ 188 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLG 188 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSS
T ss_pred ceEEEECCCCccHHHHHHHHhCC
Confidence 36899999999999999987654
No 190
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.71 E-value=0.012 Score=51.56 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=.+++|+|..|.|||||++.+..
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46999999999999999998753
No 191
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.66 E-value=0.038 Score=44.95 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=21.3
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+.-.++-|+|..|+||||||..+..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999988653
No 192
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=94.65 E-value=0.031 Score=48.81 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=23.0
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
....+|+|+|..|+|||||...+...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~ 61 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGK 61 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCC
Confidence 55789999999999999999988754
No 193
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.62 E-value=0.014 Score=51.27 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.4
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 037814 206 IISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-|-++|.+|+|||+||+.+.+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSST
T ss_pred ceEEECCCchHHHHHHHHHHH
Confidence 467999999999999998764
No 194
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.59 E-value=0.011 Score=51.54 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=.+++|+|..|.|||||++.+.
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTT
T ss_pred CCEEEEECCCCChHHHHHHHHh
Confidence 3699999999999999998764
No 195
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.52 E-value=0.015 Score=50.96 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.7
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=.+++|+|..|.|||||++.+.
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999865
No 196
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.52 E-value=0.019 Score=49.53 Aligned_cols=22 Identities=36% Similarity=0.354 Sum_probs=20.1
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=.++.|+|..|+|||||++.++
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~ 302 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFV 302 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4699999999999999999876
No 197
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.45 E-value=0.021 Score=52.67 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|+|..|+|||||++.+.
T Consensus 462 e~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999986
No 198
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=94.40 E-value=0.035 Score=44.34 Aligned_cols=25 Identities=32% Similarity=0.260 Sum_probs=20.8
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..--|.|+|..|+|||||+..+.++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCChHHHHHHHHhC
Confidence 3467889999999999999887654
No 199
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.39 E-value=0.042 Score=46.47 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.7
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..+-|.|.+|+||||++..+.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~ 66 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFII 66 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHH
Confidence 389999999999999998764
No 200
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.36 E-value=0.03 Score=48.50 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.8
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhc
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
...+|.+.|+.|+||||+|+.+..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~ 394 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILAT 394 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHH
Confidence 357899999999999999998753
No 201
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.33 E-value=0.016 Score=53.47 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|+|..|+|||||.+.+.-
T Consensus 700 eivaIiGpNGSGKSTLLklLaG 721 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTG 721 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998853
No 202
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.33 E-value=0.058 Score=42.59 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
....|+|+|.+|+|||||...+...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~ 143 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKK 143 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCceEEEEecCCCchHHHHHHHhcC
Confidence 3457899999999999999988754
No 203
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=94.32 E-value=0.03 Score=46.38 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.0
Q ss_pred CCCEEEEEec-CCCCcHHHHHHHH
Q 037814 202 KGPRIISLVG-MGGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG-~gGvGKTTLa~~v 224 (229)
...+||+|++ -||+||||+|-.+
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nL 129 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSL 129 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHH
Confidence 5689999995 5999999988654
No 204
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=94.27 E-value=0.024 Score=48.99 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.5
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..--|+++|.+|+|||||...+.+.
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999988754
No 205
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.24 E-value=0.024 Score=46.37 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=19.9
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-.++-|.|.+|+||||||.++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la 84 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVI 84 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34699999999999999998764
No 206
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.19 E-value=0.033 Score=44.85 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.8
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-.++-|+|.+|+||||||.++.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la 128 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLS 128 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHH
Confidence 4699999999999999998865
No 207
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.04 E-value=0.045 Score=43.92 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.4
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-.++-|+|.+|+||||||.++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la 119 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSC 119 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999998865
No 208
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.04 E-value=0.035 Score=48.21 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.2
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
....|+|+|..|+|||||...+...
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999998764
No 209
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.97 E-value=0.012 Score=48.90 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=18.7
Q ss_pred EEEEecCCCCcHHHHHHHHh
Q 037814 206 IISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~vy 225 (229)
+++|+|..|.|||||.+.|+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 99999999999999998874
No 210
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.96 E-value=0.03 Score=46.29 Aligned_cols=34 Identities=18% Similarity=-0.019 Sum_probs=24.9
Q ss_pred HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 188 ELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 188 ~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
++++.+..-. .=..++|+|..|+|||||++.+-+
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHH
Confidence 4556554332 235899999999999999987743
No 211
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.80 E-value=0.085 Score=44.56 Aligned_cols=47 Identities=13% Similarity=0.187 Sum_probs=30.4
Q ss_pred echhhHHHHHHHhhcCC-CCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 181 GREKEKNELVNRLLCES-SEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 181 G~~~~~~~l~~~L~~~~-~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
|.++-.+.+.+.+.... ........-|+|+|.+|+|||||...+...
T Consensus 171 gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 171 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp THHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred chHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCC
Confidence 44444555554443221 112245678999999999999999988754
No 212
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.68 E-value=0.038 Score=44.35 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=.++-|.|.+|+||||||..+.
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia 89 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQA 89 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4689999999999999998864
No 213
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.68 E-value=0.089 Score=41.22 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=25.4
Q ss_pred hhHHHHHHHhhcCCCCCCCCCEEEEEecC-CCCcHHHHHHHH
Q 037814 184 KEKNELVNRLLCESSEERKGPRIISLVGM-GGIGKTTLAQFA 224 (229)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~-gGvGKTTLa~~v 224 (229)
+....|..-|..... ..+.+||.|.|. ||+||||+|-.+
T Consensus 64 Ea~r~lrt~l~~~~~--~~~~kvI~vts~kgG~GKTt~a~nL 103 (271)
T 3bfv_A 64 EKFRGIRSNIMFANP--DSAVQSIVITSEAPGAGKSTIAANL 103 (271)
T ss_dssp HHHHHHHHHHHHSST--TCCCCEEEEECSSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc--CCCCeEEEEECCCCCCcHHHHHHHH
Confidence 344445444433221 145789999986 899999998764
No 214
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=93.61 E-value=0.029 Score=45.68 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.4
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
+..|+|+|..++|||||...+.+.
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEE
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcC
Confidence 446899999999999999987653
No 215
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.43 E-value=0.046 Score=46.20 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=.++.|.|.+|+|||||+..+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia 224 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIA 224 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999998865
No 216
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.40 E-value=0.027 Score=50.12 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=17.9
Q ss_pred EEEEEecCCCCcHHHHHHHH
Q 037814 205 RIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+++|+|..|+|||||++.+
T Consensus 349 e~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTT
T ss_pred CEEEEEeeCCCCHHHHHHHH
Confidence 58999999999999999754
No 217
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.35 E-value=0.042 Score=52.54 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+++|||..|.|||||++.++.
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999864
No 218
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.33 E-value=0.054 Score=43.11 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.2
Q ss_pred CCCEEEEEecC-CCCcHHHHHHHH
Q 037814 202 KGPRIISLVGM-GGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG~-gGvGKTTLa~~v 224 (229)
.+.+||.|.|. ||+||||+|-.+
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nL 125 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTL 125 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCChHHHHHHH
Confidence 44689999997 899999998764
No 219
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=93.17 E-value=0.031 Score=46.46 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=11.3
Q ss_pred CCCEEEEEec-CCCCcHHHHHHHH
Q 037814 202 KGPRIISLVG-MGGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG-~gGvGKTTLa~~v 224 (229)
...+||+|++ -||+||||++-.+
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nL 132 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTL 132 (403)
T ss_dssp CSCEEEEECCC--------CHHHH
T ss_pred CCceEEEEEcCCCCchHHHHHHHH
Confidence 5679999995 5999999987654
No 220
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.12 E-value=0.042 Score=48.81 Aligned_cols=17 Identities=41% Similarity=0.890 Sum_probs=16.1
Q ss_pred EEEEEecCCCCcHHHHH
Q 037814 205 RIISLVGMGGIGKTTLA 221 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa 221 (229)
.+++|+|..|+|||||+
T Consensus 45 e~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 45 KLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHh
Confidence 59999999999999996
No 221
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.96 E-value=0.052 Score=48.93 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=19.3
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++|+|..|.|||||.+.+.
T Consensus 577 ~i~~I~GpNGsGKSTlLr~ia 597 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTA 597 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999874
No 222
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=92.70 E-value=0.064 Score=45.77 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=20.0
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.--|.|+|.+|+|||||...+...
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~ 345 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLG 345 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Confidence 346779999999999999987654
No 223
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=92.67 E-value=0.074 Score=43.73 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhc
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
....|.|=|.-|+||||+++.+.+
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae 71 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVA 71 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
No 224
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=92.66 E-value=0.061 Score=48.78 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.3
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-.+++|+|..|.|||||.+.+.
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~ia 628 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTA 628 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHH
Confidence 34699999999999999999874
No 225
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.59 E-value=0.063 Score=44.09 Aligned_cols=22 Identities=41% Similarity=0.351 Sum_probs=19.1
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-.++-|+|.+|+||||||..+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la 95 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIV 95 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHH
Confidence 4688899999999999998764
No 226
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.59 E-value=0.082 Score=41.80 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=19.1
Q ss_pred CCCEEEEEecC-CCCcHHHHHHHH
Q 037814 202 KGPRIISLVGM-GGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG~-gGvGKTTLa~~v 224 (229)
.+.+||.|+|. ||+||||+|-.+
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nL 113 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANL 113 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCcHHHHHHHH
Confidence 45689999986 899999998654
No 227
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.58 E-value=0.089 Score=44.23 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.9
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 201 RKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 201 ~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
....+|..|.|.+|.||||+.+...+
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 36789999999999999999988764
No 228
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.54 E-value=0.059 Score=45.63 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=18.3
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 037814 206 IISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|+|..|+|||||++.+.+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHh
Confidence 589999999999999997643
No 229
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=92.34 E-value=0.16 Score=42.77 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=22.8
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..+.||+|+|...+||+||...++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 5699999999999999999999863
No 230
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.32 E-value=0.064 Score=51.29 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.9
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=.+++|||..|.|||||++.+.
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~ 437 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQ 437 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999875
No 231
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.14 E-value=0.081 Score=44.55 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=19.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-.++-|.|.+|+||||||..+.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia 221 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIA 221 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4689999999999999998764
No 232
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=92.12 E-value=0.074 Score=45.10 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=18.7
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 037814 206 IISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.|+|+|..|+|||||...+.+
T Consensus 226 kV~ivG~~nvGKSSLln~L~~ 246 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQ 246 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhC
Confidence 389999999999999998764
No 233
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=92.07 E-value=0.062 Score=45.73 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=18.2
Q ss_pred EEEEecCCCCcHHHHHHHHhcC
Q 037814 206 IISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.|+|+|.+|+|||||...+.+.
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999987654
No 234
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=92.05 E-value=0.032 Score=50.78 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=17.6
Q ss_pred EEEEEecCCCCcHHHHHHH
Q 037814 205 RIISLVGMGGIGKTTLAQF 223 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~ 223 (229)
.+++|+|..|+|||||++.
T Consensus 524 eiv~I~G~nGSGKSTLl~~ 542 (842)
T 2vf7_A 524 VMTSVTGVSGSGKSTLVSQ 542 (842)
T ss_dssp SEEEEECCTTSSHHHHCCC
T ss_pred CEEEEEcCCCcCHHHHHHH
Confidence 4899999999999999986
No 235
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.99 E-value=0.091 Score=42.61 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.4
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-.++-|.|.+|+||||||..+.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia 67 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMV 67 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3688999999999999998864
No 236
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.97 E-value=0.082 Score=46.12 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.7
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.++-|.|.+|+||||++..+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~ 225 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVA 225 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 588899999999999998865
No 237
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=91.85 E-value=0.057 Score=49.84 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=18.4
Q ss_pred EEEEEecCCCCcHHHHHHHH
Q 037814 205 RIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+++|+|..|+|||||++.+
T Consensus 669 eivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 669 VLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp SEEEEECSTTSSHHHHHTTT
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 48999999999999999974
No 238
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.85 E-value=0.053 Score=51.97 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.9
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..|+|||..|.|||||++.++.
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 5899999999999999998763
No 239
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.81 E-value=0.081 Score=50.72 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
=..++|||..|+|||||++.+..
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTT
T ss_pred CcEEEEEecCCCcHHHHHHHhcc
Confidence 36899999999999999998753
No 240
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.68 E-value=0.16 Score=46.07 Aligned_cols=51 Identities=27% Similarity=0.252 Sum_probs=35.3
Q ss_pred CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.++.|.++.++.|.+.+...-.. .....+=|-++|.+|.|||.||+.|-+.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 46788998888887765432100 0122344669999999999999998654
No 241
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.68 E-value=0.093 Score=48.37 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=19.5
Q ss_pred CEEEEEecCCCCcHHHHHHHH
Q 037814 204 PRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~v 224 (229)
-.+++|+|..|.|||||.+.|
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999987
No 242
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.53 E-value=0.23 Score=37.75 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=22.5
Q ss_pred hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHH
Q 037814 185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQF 223 (229)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~ 223 (229)
..++++..+..+ ..+.|+|..|+||||+...
T Consensus 65 ~q~~~i~~i~~g--------~~~~i~g~TGsGKTt~~~~ 95 (235)
T 3llm_A 65 FESEILEAISQN--------SVVIIRGATGCGKTTQVPQ 95 (235)
T ss_dssp GHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHHhcC--------CEEEEEeCCCCCcHHhHHH
Confidence 345556555544 4789999999999987654
No 243
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=91.53 E-value=0.078 Score=48.76 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.2
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-.+++|+|..|.|||||.+.|.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHH
Confidence 35799999999999999999863
No 244
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=91.35 E-value=0.054 Score=49.86 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=18.3
Q ss_pred EEEEEecCCCCcHHHHHHHH
Q 037814 205 RIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+++|+|..|+|||||++.+
T Consensus 651 eiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 651 TFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp SEEECCBCTTSSHHHHHTTT
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 48999999999999999874
No 245
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.26 E-value=0.11 Score=43.78 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-.++-|.|.+|+||||||-.+.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia 218 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQA 218 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHH
Confidence 4689999999999999998764
No 246
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.20 E-value=0.11 Score=42.96 Aligned_cols=35 Identities=23% Similarity=0.133 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 187 NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 187 ~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
-++++.|..-. . =.-++|+|-.|+|||||++.|-+
T Consensus 163 iraID~l~Pig----r-GQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 163 TRLIDLFAPIG----K-GQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHHSCCB----T-TCEEEEEECTTCCHHHHHHHHHH
T ss_pred chhhhhccccc----C-CceEEEecCCCCChhHHHHHHHH
Confidence 36677775422 1 25779999999999999987765
No 247
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=90.96 E-value=0.12 Score=48.17 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=19.4
Q ss_pred CEEEEEecCCCCcHHHHHHHH
Q 037814 204 PRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~v 224 (229)
-.+++|+|..|.|||||.+.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 479999999999999999986
No 248
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.95 E-value=0.17 Score=39.87 Aligned_cols=13 Identities=38% Similarity=0.787 Sum_probs=11.4
Q ss_pred CCCCcHHHHHHHH
Q 037814 212 MGGIGKTTLAQFA 224 (229)
Q Consensus 212 ~gGvGKTTLa~~v 224 (229)
-||+||||+|-.+
T Consensus 45 KGGvGKTT~a~nL 57 (298)
T 2oze_A 45 KGGVGKSKLSTMF 57 (298)
T ss_dssp SSSSSHHHHHHHH
T ss_pred CCCchHHHHHHHH
Confidence 8999999998764
No 249
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=90.89 E-value=0.18 Score=41.41 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=27.3
Q ss_pred eechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 180 FGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 180 vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.|.+.-++.|.+++. -..|.++|..|+|||||...+.+.
T Consensus 147 ~gi~~L~~~I~~~~~---------~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 147 IGMAKVMEAINRYRE---------GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp BTHHHHHHHHHHHHT---------TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhcc---------cCcEEEEcCCCCchHHHHHHHHhh
Confidence 344555555555441 136889999999999999988753
No 250
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.89 E-value=0.13 Score=42.33 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.1
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-+.|+|..|.|||||++.+.
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~ 56 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLL 56 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHH
Confidence 356899999999999999864
No 251
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=90.85 E-value=0.18 Score=45.08 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=21.0
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
...|+|+|..|+|||||...+...
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999988754
No 252
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=90.74 E-value=0.26 Score=40.68 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=32.1
Q ss_pred cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++|....+.++.+.+..-.. .+..| -|.|-.|+|||++|+.++.
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~v-li~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECPV-LITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSCE-EEECSTTSSHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCCe-EEecCCCcCHHHHHHHHHH
Confidence 356666667777766644321 33555 7999999999999999874
No 253
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=90.21 E-value=0.36 Score=40.70 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
..+.||+|+|.-+.||+||...++
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 569999999999999999999664
No 254
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=90.05 E-value=0.16 Score=44.60 Aligned_cols=20 Identities=40% Similarity=0.403 Sum_probs=17.7
Q ss_pred EEEEEecCCCCcHHHHHHHH
Q 037814 205 RIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~v 224 (229)
+++-|.|.+|.||||++..+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~l 184 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKL 184 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 58899999999999988765
No 255
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=90.04 E-value=0.18 Score=44.31 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=20.7
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
+..--|+|+|..|+|||||...+..+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHh
Confidence 33456779999999999999887543
No 256
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.63 E-value=0.14 Score=43.75 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=19.2
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
=.++-|.|.+|+||||||.++.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a 263 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQA 263 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHH
Confidence 4688999999999999998764
No 257
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=89.45 E-value=0.2 Score=40.10 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-|.|.|..|+||||||..+..
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHh
Confidence 5689999999999999987653
No 258
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=89.45 E-value=0.25 Score=43.19 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=20.8
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+...-|+|+|..++|||||...+.
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll 198 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIM 198 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHH
T ss_pred CCccEEEEEcCCCCCHHHHHHHHH
Confidence 556789999999999999998763
No 259
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=89.22 E-value=0.2 Score=41.12 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.0
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
..|.++|..|+|||||...+.+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhh
Confidence 46889999999999999988753
No 260
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=88.87 E-value=0.26 Score=40.59 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.+..-|+|||.+.+|||||...+-+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~ 94 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTG 94 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHS
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999988754
No 261
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=88.56 E-value=0.22 Score=45.85 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=16.3
Q ss_pred EEEEEecCCCCcHHHHHH
Q 037814 205 RIISLVGMGGIGKTTLAQ 222 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~ 222 (229)
.+++|+|..|+|||||+.
T Consensus 611 eiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 611 VFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEEccCCCChhhhHH
Confidence 589999999999999973
No 262
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=88.43 E-value=0.52 Score=41.60 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=20.5
Q ss_pred hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHH
Q 037814 183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA 221 (229)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa 221 (229)
+..++.|...|... .+.-|.|++|.||||.+
T Consensus 192 ~~Q~~AV~~al~~~--------~~~lI~GPPGTGKT~ti 222 (646)
T 4b3f_X 192 TSQKEAVLFALSQK--------ELAIIHGPPGTGKTTTV 222 (646)
T ss_dssp HHHHHHHHHHHHCS--------SEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHHHhcCC--------CceEEECCCCCCHHHHH
Confidence 34455566556432 26678999999999643
No 263
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=88.39 E-value=0.074 Score=45.34 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
-.|+|+|.+|+|||||...+.+.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~ 266 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNE 266 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCC
Confidence 46789999999999999887654
No 264
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=87.76 E-value=0.25 Score=41.87 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-++|+|-.|+|||||++.+-+
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~ 175 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELIN 175 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHH
Confidence 5789999999999999977643
No 265
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=87.12 E-value=0.28 Score=41.70 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=18.8
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-++|+|-.|+|||+|++.+-+
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~ 187 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELIN 187 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHH
Confidence 5689999999999999977644
No 266
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=86.10 E-value=0.5 Score=38.67 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=31.3
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
..++|....+.++.+.+..-.. .... +-|.|-.|+||+++|+.+++
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~---~~~~-vli~GesGtGKe~lAr~ih~ 174 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK---SKAP-VLITGESGTGKEIVARLIHR 174 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT---SCSC-EEEECCTTSSHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc---cchh-heEEeCCCchHHHHHHHHHH
Confidence 3577877777666665532221 2233 55899999999999999874
No 267
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=86.08 E-value=0.18 Score=43.30 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.1
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+..|+|..|.|||||...+|
T Consensus 61 g~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 61 GFCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp SEEEEEESHHHHHHHHTHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 488999999999999999884
No 268
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=85.95 E-value=0.22 Score=41.93 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=19.1
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.-++|+|-.|+|||||+..|.+.
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~ 170 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQ 170 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHH
Confidence 35678999999999999987654
No 269
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=85.91 E-value=0.85 Score=41.10 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=29.4
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814 186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.++|.+.|..-.....-.+..|+|||..++|||||...+...
T Consensus 33 inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~ 74 (772)
T 3zvr_A 33 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 74 (772)
T ss_dssp HHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSS
T ss_pred HHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 444555554333222356889999999999999999988653
No 270
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=85.91 E-value=0.46 Score=41.82 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=16.0
Q ss_pred EEEEecCCCCcHHHHHHHH
Q 037814 206 IISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~v 224 (229)
+.-|.|.+|.||||++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~ 215 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATI 215 (624)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHH
Confidence 6779999999999976654
No 271
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=85.69 E-value=0.46 Score=37.97 Aligned_cols=21 Identities=33% Similarity=0.295 Sum_probs=17.6
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-|.|.|..|+||||||-.+-
T Consensus 148 ~gvli~G~sG~GKStlal~l~ 168 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLI 168 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHH
Confidence 447899999999999997754
No 272
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.43 E-value=0.42 Score=47.48 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.1
Q ss_pred CCCEEEEEecCCCCcHHHHHHHH
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
+.-++|-|+|.+|+||||||.++
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~al 1447 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQV 1447 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHH
Confidence 34579999999999999999876
No 273
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=85.41 E-value=0.27 Score=41.40 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=18.7
Q ss_pred EEEEecCCCCcHHHHHHHHhcC
Q 037814 206 IISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
-++|+|-.|+|||||+..|.+.
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~ 174 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQ 174 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHH
Confidence 4688999999999999987654
No 274
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=85.17 E-value=0.39 Score=40.68 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=19.7
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
....|+|+|..++|||||...+.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll 64 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNIL 64 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHH
T ss_pred CeeEEEEEECCCCCHHHHHHHHH
Confidence 35678999999999999998763
No 275
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=85.04 E-value=0.29 Score=41.41 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=18.9
Q ss_pred EEEEEecCCCCcHHHHHHHHhcC
Q 037814 205 RIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.-++|+|-.|+|||||+..|.++
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~ 175 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQ 175 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999887653
No 276
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=84.61 E-value=0.51 Score=40.93 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=25.1
Q ss_pred HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 188 ELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 188 ~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
++++.|.--. +=.-++|+|-.|+|||+|++.+-+
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~ 254 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAK 254 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHH
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHh
Confidence 4566664321 125789999999999999998865
No 277
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=84.58 E-value=1.1 Score=40.60 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=23.6
Q ss_pred hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
...+.|...|..+ .++.|+|..|.||||++..+
T Consensus 97 ~q~~~i~~~l~~~--------~~vii~gpTGSGKTtllp~l 129 (773)
T 2xau_A 97 AQRDEFLKLYQNN--------QIMVFVGETGSGKTTQIPQF 129 (773)
T ss_dssp GGHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHhCC--------CeEEEECCCCCCHHHHHHHH
Confidence 3455666666443 48899999999999965544
No 278
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=84.36 E-value=0.37 Score=41.61 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-++|+|-.|+|||+|++.+-+
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~ 249 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAK 249 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCHHHHHHHHHh
Confidence 5789999999999999998755
No 279
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=84.02 E-value=0.5 Score=40.77 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=19.6
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-++|+|-.|+|||+|++.+-+
T Consensus 222 qr~~Ifg~~g~GKT~l~~~ia~ 243 (578)
T 3gqb_A 222 GTAAIPGPFGSGKSVTQQSLAK 243 (578)
T ss_dssp CEEEECCCTTSCHHHHHHHHHH
T ss_pred CEEeeeCCCCccHHHHHHHHHh
Confidence 5789999999999999998865
No 280
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.32 E-value=0.6 Score=45.72 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=19.7
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-.+|-|.|.+|+||||||.++.
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA 753 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVI 753 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHH
Confidence 4699999999999999998874
No 281
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.13 E-value=0.54 Score=46.05 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=20.7
Q ss_pred CCEEEEEecCCCCcHHHHHHHHhc
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-+++=|+|.+|.|||+||+++.+
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~ 1104 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIA 1104 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCChHHHHHHHHH
Confidence 346788999999999999998764
No 282
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=83.05 E-value=0.64 Score=39.88 Aligned_cols=19 Identities=37% Similarity=0.653 Sum_probs=16.9
Q ss_pred CEEEEEecCCCCcHHHHHH
Q 037814 204 PRIISLVGMGGIGKTTLAQ 222 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~ 222 (229)
=.++.+.|..|.|||||+.
T Consensus 241 g~~~lffGlSGtGKTTLs~ 259 (540)
T 2olr_A 241 GDVAVFFGLSGTGKTTLST 259 (540)
T ss_dssp SCEEEEECSTTSSHHHHHC
T ss_pred CCEEEEEccCCCCHHHHhc
Confidence 3689999999999999973
No 283
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=82.97 E-value=0.64 Score=39.91 Aligned_cols=18 Identities=39% Similarity=0.647 Sum_probs=16.4
Q ss_pred EEEEEecCCCCcHHHHHH
Q 037814 205 RIISLVGMGGIGKTTLAQ 222 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~ 222 (229)
.++.+.|..|.|||||+.
T Consensus 236 ~~~~ffGlSGtGKTTLs~ 253 (532)
T 1ytm_A 236 NTAIFFGLSGTGKTTLST 253 (532)
T ss_dssp SEEEEECCTTSSHHHHHC
T ss_pred eEEEEEecCCCCHHHHhh
Confidence 599999999999999983
No 284
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=82.95 E-value=0.72 Score=41.85 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=16.4
Q ss_pred EEEEEecCCCCcHHHHHHHH
Q 037814 205 RIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~v 224 (229)
.+.-|.|.+|.||||++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~ 391 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATI 391 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHH
Confidence 36779999999999876654
No 285
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=82.82 E-value=0.65 Score=39.79 Aligned_cols=19 Identities=37% Similarity=0.653 Sum_probs=16.9
Q ss_pred CEEEEEecCCCCcHHHHHH
Q 037814 204 PRIISLVGMGGIGKTTLAQ 222 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~ 222 (229)
=.++.+.|..|.|||||+.
T Consensus 213 g~~~~ffGlSGtGKTTLs~ 231 (524)
T 1ii2_A 213 GDVTVFFGLSGTGKTTLSA 231 (524)
T ss_dssp CCEEEEECCTTSSHHHHHC
T ss_pred CCEEEEEccCCcchhhhhh
Confidence 3599999999999999974
No 286
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=82.70 E-value=0.73 Score=39.51 Aligned_cols=21 Identities=14% Similarity=0.127 Sum_probs=18.2
Q ss_pred CEEEEEecCCCCcHHHHHHHH
Q 037814 204 PRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~v 224 (229)
-.-+.|.|..|.||||+++.+
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~l 187 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAM 187 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 357899999999999998875
No 287
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=81.89 E-value=1.1 Score=39.00 Aligned_cols=21 Identities=48% Similarity=0.748 Sum_probs=16.2
Q ss_pred CEEEEEecCCCCcHHHHHHHH
Q 037814 204 PRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~v 224 (229)
-.++-+.|.||+||||+|-.+
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~l 347 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAI 347 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEEecCCCCChhhHHHHH
Confidence 356666889999999997553
No 288
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=81.38 E-value=0.62 Score=39.95 Aligned_cols=18 Identities=39% Similarity=0.719 Sum_probs=16.3
Q ss_pred EEEEEecCCCCcHHHHHH
Q 037814 205 RIISLVGMGGIGKTTLAQ 222 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~ 222 (229)
.++.+.|..|.|||||+.
T Consensus 226 ~~~~ffGlSGtGKTtLs~ 243 (529)
T 1j3b_A 226 DVAVFFGLSGTGKTTLST 243 (529)
T ss_dssp CEEEEEECTTSCHHHHTC
T ss_pred cEEEEEccccCChhhHhh
Confidence 688999999999999984
No 289
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=81.37 E-value=0.83 Score=38.07 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=17.8
Q ss_pred CEEEEEecCCCCcHHHHHHHH
Q 037814 204 PRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~v 224 (229)
..-+.|+|..|+|||++++.+
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~l 73 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLREL 73 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHH
Confidence 357889999999999998664
No 290
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=81.18 E-value=0.82 Score=39.02 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=18.6
Q ss_pred EEEEEecCCCCcHHHHH-HHHhcC
Q 037814 205 RIISLVGMGGIGKTTLA-QFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa-~~vy~d 227 (229)
.-++|+|-.|+|||||| ..|.|.
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~ 199 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQ 199 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCccHHHHHHHHHh
Confidence 46889999999999994 566653
No 291
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=81.01 E-value=0.8 Score=39.00 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=18.0
Q ss_pred EEEEEecCCCCcHHHHH-HHHhc
Q 037814 205 RIISLVGMGGIGKTTLA-QFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa-~~vy~ 226 (229)
.-++|+|-.|+|||+|| ..|.|
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~ 185 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIIN 185 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHG
T ss_pred CEEEEECCCCCCchHHHHHHHHH
Confidence 46789999999999994 56655
No 292
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.95 E-value=0.82 Score=45.53 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=20.2
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-.++-|+|.+|+||||||.++.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia 404 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVI 404 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 35799999999999999998874
No 293
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=79.71 E-value=1.1 Score=40.66 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=15.8
Q ss_pred EEEEecCCCCcHHHHHHHH
Q 037814 206 IISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~v 224 (229)
+.-|.|.+|.||||++..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~ 395 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATI 395 (802)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 6779999999999876554
No 294
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=79.46 E-value=0.93 Score=38.67 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=18.5
Q ss_pred EEEEEecCCCCcHHHH-HHHHhcC
Q 037814 205 RIISLVGMGGIGKTTL-AQFAYNN 227 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTL-a~~vy~d 227 (229)
.-++|+|-.|+|||+| ...|.|.
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~ 187 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQ 187 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTC
T ss_pred CEEEEecCCCCCccHHHHHHHHHh
Confidence 4568999999999999 4577654
No 295
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=79.32 E-value=0.9 Score=38.77 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=17.2
Q ss_pred EEEEEecCCCCcHHHHH-HHHhc
Q 037814 205 RIISLVGMGGIGKTTLA-QFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa-~~vy~ 226 (229)
.-++|+|-.|+|||+|| ..|.|
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~ 185 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIIN 185 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHH
Confidence 46789999999999994 44443
No 296
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=79.29 E-value=2.1 Score=44.04 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=27.4
Q ss_pred ceechhhHHHH---HHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 179 IFGREKEKNEL---VNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 179 ~vG~~~~~~~l---~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+|=+++.++.| -..|... ..=+-+||.||+|||||++.+.
T Consensus 1588 LVlF~dai~Hi~RI~Ril~~p-------~G~~LLvGvgGsGkqSltrLaa 1630 (2695)
T 4akg_A 1588 MVIHESMVDHILRIDRALKQV-------QGHMMLIGASRTGKTILTRFVA 1630 (2695)
T ss_dssp CCCCHHHHHHHHHHHHHHHSS-------SEEEEEECTTTSCHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHcCC-------CCCEEEECCCCCcHHHHHHHHH
Confidence 44455555544 4445433 3567799999999999999863
No 297
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=79.15 E-value=1.1 Score=37.10 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=17.7
Q ss_pred CCCEEEEEecCCCCcHHHHHHH
Q 037814 202 KGPRIISLVGMGGIGKTTLAQF 223 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~ 223 (229)
...--|-+.|.|++||||+.++
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQ 59 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQ 59 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHH
Confidence 3344566889999999999987
No 298
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=78.95 E-value=1.4 Score=41.76 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=21.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+....|+|+|..++|||||...+..
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~ 318 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITT 318 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHh
Confidence 4567799999999999999988754
No 299
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=77.86 E-value=2.8 Score=33.31 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=21.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
-.+|.+=|+-|+||+|.++.|+..
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~ 109 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTAN 109 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 568889999999999999999864
No 300
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=77.71 E-value=1.1 Score=40.95 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=17.9
Q ss_pred CCCEEEEEecCCCCcHHHHHH
Q 037814 202 KGPRIISLVGMGGIGKTTLAQ 222 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~ 222 (229)
+.=+.+.|.|..|+||+|||-
T Consensus 34 P~~~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 34 PRDALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp ESSSEEEEESSTTSSHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 334788999999999999993
No 301
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=74.92 E-value=15 Score=23.92 Aligned_cols=83 Identities=13% Similarity=0.206 Sum_probs=52.7
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhccCCccccCCCccc
Q 037814 28 VTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKK 107 (229)
Q Consensus 28 ~~~~~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~yd~eD~lD~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (229)
+.+++.+.+.+..++.. .+..+.... ..+.-+.-+.++.....+++++|+.....+.
T Consensus 17 Fe~YE~df~~l~~~i~~---kl~~i~~~~-~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r------------------- 73 (102)
T 2qyw_A 17 FEKLHEIFRGLLEDLQG---VPERLLGTA-GTEEKKKLVRDFDEKQQEANETLAEMEEELR------------------- 73 (102)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHTCC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHH---HHHHhcccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 34445555544444433 333332221 2356667789999999999999999886541
Q ss_pred ccccccCCccccccCchhhhHHHHHHHHHHHHHHHHHHH
Q 037814 108 KVCSLFPAASCFARKPLVLRRDIALKIKEINETLDDIAK 146 (229)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~~~~ 146 (229)
. -+...|..+..+++..+..|+.+..
T Consensus 74 ------------~-~p~s~R~~~~~klr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 74 ------------Y-APLTFRNPMMSKLRNYRKDLAKLHR 99 (102)
T ss_dssp ------------T-SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------h-CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 1234567788899999888888654
No 302
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=74.52 E-value=1.8 Score=36.89 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=17.9
Q ss_pred EEEEEecCCCCcHHHHH-HHHhc
Q 037814 205 RIISLVGMGGIGKTTLA-QFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa-~~vy~ 226 (229)
.-++|+|-.|+|||+|+ ..|.|
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n 185 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIIN 185 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEeecCCCCCcchHHHHHHHh
Confidence 46789999999999995 56654
No 303
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=73.66 E-value=15 Score=23.57 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhccCCccccCCCcccccccccCCccccccCchhhhHHHHHHHHHHH
Q 037814 59 EETVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFARKPLVLRRDIALKIKEIN 138 (229)
Q Consensus 59 ~~~~~~wl~~l~~~~yd~eD~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 138 (229)
.+.-+.-++++.....+++++|+.....+.-. ..+...|..+..+++..+
T Consensus 29 ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~------------------------------~~p~~~R~~~~~klr~Yk 78 (97)
T 3onj_A 29 LSQRNTTLKHVEQQQDELFDLLDQMDVEVNNS------------------------------IGDASERATYKAKLREWK 78 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------CCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------------------CCCHHHHHHHHHHHHHHH
Confidence 45667788999999999999999998654210 001334566777777777
Q ss_pred HHHHH-HHHH
Q 037814 139 ETLDD-IAKQ 147 (229)
Q Consensus 139 ~~l~~-~~~~ 147 (229)
..|+. +...
T Consensus 79 ~dl~~~lk~~ 88 (97)
T 3onj_A 79 KTIQSDIKRP 88 (97)
T ss_dssp HHHHHHTHHH
T ss_pred HHHHHHHHHH
Confidence 77777 6544
No 304
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=73.46 E-value=16 Score=23.71 Aligned_cols=86 Identities=7% Similarity=0.135 Sum_probs=55.1
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhccCCccccCCCcccc
Q 037814 29 TGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKK 108 (229)
Q Consensus 29 ~~~~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~yd~eD~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (229)
.++..+...+..++.. .+..+... ..+.-+.-+.++.....+|+++|+.....+.
T Consensus 8 e~YE~df~~l~~~i~~---kl~~i~~~--~geerk~~i~~ie~~l~EA~ell~qMelE~r-------------------- 62 (102)
T 1vcs_A 8 EGYEQDFAVLTAEITS---KIARVPRL--PPDEKKQMVANVEKQLEEARELLEQMDLEVR-------------------- 62 (102)
T ss_dssp CCSHHHHHHHHHHHHH---HHHHGGGS--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------------
T ss_pred HHHHHHHHHHHHHHHH---HHHHhhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 3455555555544444 33333322 2344566689999999999999999885531
Q ss_pred cccccCCccccccCchhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 037814 109 VCSLFPAASCFARKPLVLRRDIALKIKEINETLDDIAKQRDMF 151 (229)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~~~~~~~~~ 151 (229)
.-+...|..+..+++..+..|+.+.......
T Consensus 63 ------------~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 63 ------------EIPPQSRGMYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp ------------TSCTTTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred ------------hCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0013346778889999999998887665443
No 305
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=73.32 E-value=15 Score=23.19 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=43.7
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 037814 28 VTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNT 85 (229)
Q Consensus 28 ~~~~~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~yd~eD~lD~~~~ 85 (229)
+..+...|..|..++..|+..+.+.+-.......+.....++..+--+.+.+.+.+.+
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888776644333467888888888888888888877764
No 306
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=72.92 E-value=1.6 Score=40.32 Aligned_cols=19 Identities=37% Similarity=0.751 Sum_probs=17.0
Q ss_pred CCEEEEEecCCCCcHHHHH
Q 037814 203 GPRIISLVGMGGIGKTTLA 221 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa 221 (229)
.=+.+.|.|..|+||++||
T Consensus 43 ~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 43 RGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp TTSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3478999999999999998
No 307
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=72.81 E-value=1.9 Score=44.26 Aligned_cols=22 Identities=41% Similarity=0.424 Sum_probs=17.7
Q ss_pred EEEEEecCCCCcHHHHHHHHhc
Q 037814 205 RIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
+=|-++|..|+|||+||+.+..
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~ 1289 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALR 1289 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 3556999999999999966543
No 308
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=72.69 E-value=1.6 Score=40.39 Aligned_cols=18 Identities=39% Similarity=0.746 Sum_probs=16.6
Q ss_pred CEEEEEecCCCCcHHHHH
Q 037814 204 PRIISLVGMGGIGKTTLA 221 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa 221 (229)
=+.+.|.|..|+||++||
T Consensus 46 ~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 46 DALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SSEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 478999999999999998
No 309
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=70.51 E-value=1.9 Score=44.98 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=27.5
Q ss_pred cceechhhHHHH---HHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 178 EIFGREKEKNEL---VNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 178 ~~vG~~~~~~~l---~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
++|=+++.++.| -..|... ..-.-+||.||+||++|++.+.
T Consensus 1624 ~LVlF~daleHv~RI~RIL~qp-------~GhaLLVGvgGSGkqSLtrLAa 1667 (3245)
T 3vkg_A 1624 PLVLFNEVLDHILRIDRVFRQP-------QGHALLIGVSGGGKSVLSRFVA 1667 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHHHTST-------TCCEEEEESTTSSHHHHHHHHH
T ss_pred eEEeHHHHHHHHHHHHHHHccC-------CCCeEEecCCCCcHHHHHHHHH
Confidence 355556555554 4445433 3456689999999999999863
No 310
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=69.57 E-value=2.8 Score=36.42 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=17.9
Q ss_pred CEEEEEecCCCCcHHHHHHHH
Q 037814 204 PRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~v 224 (229)
..-+.|.|..|.|||++++.+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tl 234 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAM 234 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHH
Confidence 356889999999999998874
No 311
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=68.63 E-value=2.9 Score=33.37 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=18.5
Q ss_pred CCCEEEEE--ecCCCCcHHHHHHHHhc
Q 037814 202 KGPRIISL--VGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 202 ~~~~Vi~I--vG~gGvGKTTLa~~vy~ 226 (229)
.++.||+| .-.||.|||-++-.+++
T Consensus 34 ~~vPVI~VGNitvGGTGKTP~vi~L~~ 60 (315)
T 4ehx_A 34 LPVPVISVGNLSVGGSGKTSFVMYLAD 60 (315)
T ss_dssp CSSCEEEEEESBSSCCSHHHHHHHHHH
T ss_pred CCCCEEEECCEEeCCCChHHHHHHHHH
Confidence 45677754 22799999999988764
No 312
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=67.98 E-value=7.9 Score=31.99 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=25.4
Q ss_pred hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+..+.+.|.... .++++|+|-|-.| |||-+..+.
T Consensus 34 r~~~~l~~lg~p~----~~~~vI~VTGTnG--KtTT~~~l~ 68 (422)
T 1w78_A 34 RVSLVAARLGVLK----PAPFVFTVAGTNG--KGTTCRTLE 68 (422)
T ss_dssp HHHHHHHHHTCSS----CSSEEEEEECSSC--HHHHHHHHH
T ss_pred HHHHHHHHcCCcc----cCCcEEEEeCCcC--hHHHHHHHH
Confidence 3566667775543 5688999988865 999888765
No 313
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=67.84 E-value=3.3 Score=31.36 Aligned_cols=19 Identities=37% Similarity=0.235 Sum_probs=16.0
Q ss_pred EEEecCCCCcHHHHHHHHh
Q 037814 207 ISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 207 i~IvG~gGvGKTTLa~~vy 225 (229)
+-|+|..|.|||.+|..+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~ 129 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAI 129 (237)
T ss_dssp EEEEESSSTTHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 6688999999999987654
No 314
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=67.53 E-value=2.6 Score=35.80 Aligned_cols=44 Identities=14% Similarity=0.149 Sum_probs=29.4
Q ss_pred ceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 179 IFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 179 ~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
++|.+.-+..|.=.|.++......++ -|-|+|.+|+ ||+||+.+
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdi-hVLL~G~PGt-KS~Lar~i 258 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERL-HVLLAGYPVV-CSEILHHV 258 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCC-CEEEESCHHH-HHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCCccccCCce-eEEEECCCCh-HHHHHHHH
Confidence 78888766666555554421000111 4779999999 99999998
No 315
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=65.12 E-value=9.1 Score=31.87 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=24.3
Q ss_pred hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+..+.+.|.... .+++||.|.|-.| |||-+..+.
T Consensus 37 r~~~ll~~lg~p~----~~~~vI~VtGTNG--KgSt~~~l~ 71 (437)
T 3nrs_A 37 RVKQVAERLDLLK----PAPKIFTVAGTNG--KGTTCCTLE 71 (437)
T ss_dssp HHHHHHHHTTCSC----SSSEEEEEECSSS--HHHHHHHHH
T ss_pred HHHHHHHHcCCcc----ccCCEEEEECCcC--hHHHHHHHH
Confidence 4555555554333 6789999999876 999877664
No 316
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=63.75 E-value=37 Score=24.21 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=25.4
Q ss_pred ccCcHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 037814 56 QVKEETVRLWLDQLRDACYDMEDVLGEWNTA 86 (229)
Q Consensus 56 ~~~~~~~~~wl~~l~~~~yd~eD~lD~~~~~ 86 (229)
...++.+..+...+..+.+.++|+..++..+
T Consensus 83 ~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y 113 (175)
T 4abx_A 83 AKYDETVMQLQNELRAALESVQAIAGELRDV 113 (175)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999999999998887744
No 317
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=61.60 E-value=9 Score=32.67 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=28.2
Q ss_pred hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.++-++..+|.... ..--+|.+=||.|.||+|.++.|+.
T Consensus 27 ~~L~~lQ~~~~~~~----~~~vlIvfEG~D~AGKg~~Ik~l~~ 65 (500)
T 3czp_A 27 EALLEAQFELKQQA----RFPVIILINGIEGAGKGETVKLLNE 65 (500)
T ss_dssp HHHHHHHHHHHHHC----CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC----CCCEEEEEeCcCCCCHHHHHHHHHH
Confidence 34445566665522 3357788889999999999999875
No 318
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=61.60 E-value=8.1 Score=32.04 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=23.7
Q ss_pred hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
...++++.|-... .++++|+|-|-.| |||-+..+.
T Consensus 24 ~~~~~l~~lg~p~----~~~~vI~VtGTnG--KtTT~~~l~ 58 (428)
T 1jbw_A 24 RILTLLHALGNPQ----QQGRYIHVTGTNG--KGSAANAIA 58 (428)
T ss_dssp HHHHHHHHTTCGG----GSSCEEEEECSSC--HHHHHHHHH
T ss_pred HHHHHHHHcCCch----hcCcEEEEECCCC--hHHHHHHHH
Confidence 3445555554332 5678999988865 999888765
No 319
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=61.11 E-value=9.5 Score=31.81 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=24.1
Q ss_pred hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
...++++.|-... .++++|+|-|-.| |||-+..+.
T Consensus 37 ~~~~~l~~lg~p~----~~~~vI~VTGTnG--KtTT~~~l~ 71 (442)
T 1o5z_A 37 RISMLLSKLGNPH----LEYKTIHIGGTNG--KGSVANMVS 71 (442)
T ss_dssp HHHHHHHHTTCGG----GSSEEEEEECSSS--HHHHHHHHH
T ss_pred HHHHHHHHcCCch----hcCCEEEEECCcC--HHHHHHHHH
Confidence 4555556664332 4678999988865 999888765
No 320
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=57.44 E-value=10 Score=32.07 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=24.5
Q ss_pred hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814 185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.++.+.+.|.... .++++|+|-|-.| |||-+..+.
T Consensus 49 r~~~ll~~lg~p~----~~~~vI~VtGTNG--KtST~~~l~ 83 (487)
T 2vos_A 49 RISALMDLLGSPQ----RSYPSIHIAGTNG--KTSVARMVD 83 (487)
T ss_dssp HHHHHHHHTTCGG----GSSCEEEEECSSS--HHHHHHHHH
T ss_pred HHHHHHHHcCCch----hcCeEEEEeCCCC--cHHHHHHHH
Confidence 4556666664333 5678999999875 999887764
No 321
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=57.30 E-value=46 Score=23.25 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-----ccCcHHHHHHHHHHHHHhhhhhhhhh
Q 037814 35 VKKLTSSLRAVQAVLHDAEKR-----QVKEETVRLWLDQLRDACYDMEDVLG 81 (229)
Q Consensus 35 l~~L~~~l~~i~~~l~~a~~~-----~~~~~~~~~wl~~l~~~~yd~eD~lD 81 (229)
++.|++++..++.-+..++.+ ..+..-+..|+.+...-|....+..|
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN~an~ 149 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMNSEID 149 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444444444444432 12345677888777666655555443
No 322
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=55.90 E-value=4.7 Score=29.33 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=15.0
Q ss_pred EEEecCCCCcHHHHHHHH
Q 037814 207 ISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 207 i~IvG~gGvGKTTLa~~v 224 (229)
+-|++..|.|||..+-.+
T Consensus 51 ~li~~~tGsGKT~~~~~~ 68 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYI 68 (216)
T ss_dssp EEEECSCHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 568999999999987654
No 323
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=53.02 E-value=9.9 Score=16.85 Aligned_cols=14 Identities=21% Similarity=0.658 Sum_probs=10.5
Q ss_pred cHHHHHHHHHHHHH
Q 037814 59 EETVRLWLDQLRDA 72 (229)
Q Consensus 59 ~~~~~~wl~~l~~~ 72 (229)
-+.++.|+..|+-.
T Consensus 7 vDSV~rWmeDLr~M 20 (22)
T 3ro3_B 7 VDSVQRWMEDLKLM 20 (26)
T ss_pred hHHHHHHHHHHHhh
Confidence 36788999888753
No 324
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=50.50 E-value=20 Score=17.02 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 037814 125 VLRRDIALKIKEINETLDDIA 145 (229)
Q Consensus 125 ~~~~~~~~~i~~i~~~l~~~~ 145 (229)
++|.++..++++|..+++.+.
T Consensus 8 kfrnkikeklkkigqkiqgll 28 (32)
T 1lyp_A 8 KFRNKIKEKLKKIGQKIQGLL 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 456777788888888877664
No 325
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=47.65 E-value=45 Score=20.19 Aligned_cols=45 Identities=7% Similarity=0.111 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 037814 5 IISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVL 49 (229)
Q Consensus 5 ~v~~~~~~l~~~l~~~l~~~~~~~~~~~~~l~~L~~~l~~i~~~l 49 (229)
.++.-+.++.+.|..+-..--..+..+...++.|+..|..+.+-+
T Consensus 24 ~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAkl 68 (73)
T 3pp5_A 24 DMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATF 68 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666543333222334445555555555555555544
No 326
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=47.45 E-value=11 Score=33.48 Aligned_cols=19 Identities=37% Similarity=0.261 Sum_probs=16.3
Q ss_pred CEEEEEecCCCCcHHHHHH
Q 037814 204 PRIISLVGMGGIGKTTLAQ 222 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~ 222 (229)
-+++-++|..|.|||+.|-
T Consensus 155 rk~vlv~apTGSGKT~~al 173 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYHAI 173 (677)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 4789999999999999654
No 327
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=46.69 E-value=61 Score=21.52 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHhhhhhhhhhh
Q 037814 31 VGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGE 82 (229)
Q Consensus 31 ~~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~yd~eD~lD~ 82 (229)
.+.+|+.|.+.|+.++.-+..+..+.. .+.+..+.+++..+.-+++-+-..
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd-~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEA-ADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTC-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999998888887777643 567778888888887777666444
No 328
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=45.84 E-value=16 Score=28.78 Aligned_cols=17 Identities=29% Similarity=0.165 Sum_probs=13.8
Q ss_pred EEEEecCCCCcHHHHHH
Q 037814 206 IISLVGMGGIGKTTLAQ 222 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~ 222 (229)
.+-|.+..|.|||+.+-
T Consensus 46 ~~l~~~~TGsGKT~~~~ 62 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFA 62 (367)
T ss_dssp EEEEECCSSSSHHHHHH
T ss_pred CEEEECCCCChHHHHHH
Confidence 56688999999998754
No 329
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=44.56 E-value=20 Score=28.17 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=19.7
Q ss_pred CEEEEEecCCCCcHHHHHHHHhc
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
.-+|.+=||.|.||.+.++.|+.
T Consensus 75 ~vlIvfEG~DaAGKgg~Ik~l~~ 97 (289)
T 3rhf_A 75 RLLLILQAMDTAGKGGIVSHVVG 97 (289)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCChHHHHHHHHH
Confidence 45677779999999999999875
No 330
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=44.32 E-value=13 Score=26.85 Aligned_cols=15 Identities=27% Similarity=0.142 Sum_probs=12.5
Q ss_pred EEEecCCCCcHHHHH
Q 037814 207 ISLVGMGGIGKTTLA 221 (229)
Q Consensus 207 i~IvG~gGvGKTTLa 221 (229)
+-|++..|.|||..+
T Consensus 41 ~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 41 LIGQARTGTGKTLAF 55 (207)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 668899999999753
No 331
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=43.38 E-value=26 Score=29.87 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.-+|.+=|+.|.||+|.++.|+..
T Consensus 300 ~vlIvfEG~DaAGKg~~Ik~l~~~ 323 (500)
T 3czp_A 300 SLVAVFEGNDAAGKGGAIRRVTDA 323 (500)
T ss_dssp EEEEEEEESTTSCHHHHHHHHHTT
T ss_pred CEEEEEeccCCCCHHHHHHHHHHh
Confidence 466778899999999999999864
No 332
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=42.32 E-value=56 Score=19.85 Aligned_cols=43 Identities=9% Similarity=0.154 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 037814 5 IISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQA 47 (229)
Q Consensus 5 ~v~~~~~~l~~~l~~~l~~~~~~~~~~~~~l~~L~~~l~~i~~ 47 (229)
+++..+.++.+.|...-..--..+..+...++.|+..|..+.+
T Consensus 24 ~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLEA 66 (75)
T 3p8c_E 24 IITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEA 66 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666654333222222233344444444444444443
No 333
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=40.80 E-value=31 Score=29.47 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=17.6
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++||+|-|-.| |||-...++
T Consensus 144 ~~~~vI~VTGTnG--KTTT~~ml~ 165 (535)
T 2wtz_A 144 ERLTVIGITGTSG--KTTTTYLVE 165 (535)
T ss_dssp GSSEEEEEESSSC--HHHHHHHHH
T ss_pred ccceEEEeeCCCC--hHHHHHHHH
Confidence 4678999988866 999887765
No 334
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=39.36 E-value=34 Score=28.86 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=17.5
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHh
Q 037814 202 KGPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 202 ~~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.+++||+|-|-.| |||-...+.
T Consensus 106 ~~~~vI~VTGTnG--KTTT~~ml~ 127 (498)
T 1e8c_A 106 DNLRLVGVTGTNG--KTTTTQLLA 127 (498)
T ss_dssp GSSEEEEEESSSC--HHHHHHHHH
T ss_pred ccCeEEEEeCCcC--hHHHHHHHH
Confidence 4578999988765 999887765
No 335
>3ckl_A Sulfotransferase family cytosolic 1B member 1; SULT1B1, human cytosolic sulfotransferase, resveratrol, SGC, cytoplasm, lipid metabolism; HET: STL A3P; 2.00A {Homo sapiens} PDB: 2z5f_A*
Probab=37.89 E-value=19 Score=28.11 Aligned_cols=20 Identities=20% Similarity=0.032 Sum_probs=16.5
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-|-|+|++.+| ||+++.|.
T Consensus 41 ~di~i~s~PKSG-TTwl~~il 60 (298)
T 3ckl_A 41 DDIVIATYPKSG-TTWVSEII 60 (298)
T ss_dssp TCEEEEESTTSS-HHHHHHHH
T ss_pred CCEEEEeCCCCc-hHHHHHHH
Confidence 347899999999 88888764
No 336
>2a1d_D Staphylocoagulase; prothrombin activator, hydrolase-hydrolase inhibitor complex; HET: 0G6 NDG; 3.50A {Staphylococcus aureus}
Probab=36.98 E-value=81 Score=24.85 Aligned_cols=48 Identities=13% Similarity=0.231 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 037814 31 VGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNTA 86 (229)
Q Consensus 31 ~~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~yd~eD~lD~~~~~ 86 (229)
-+++...|...|++|-+.-++ .....+..+ .++...|.|.|||+|--.
T Consensus 182 ~~~~a~eL~aKLDlIlG~~~~--~~ritNeRi------~ke~ieDLeSIIDdFF~e 229 (329)
T 2a1d_D 182 HKTEALELKAKVDLVLGDEDK--PHRISNERI------EKEMIKDLESIIEDFFIE 229 (329)
T ss_dssp THHHHHHHHHHHHHHHCCSSS--CCCCCSHHH------HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccccC--ccccchHHH------HHHHHHHHHHHHHHHHHH
Confidence 667788888888887444433 233445533 455667889999998843
No 337
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=36.41 E-value=15 Score=28.88 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=16.4
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+.|.|+|. ||+||++.+.++
T Consensus 105 ~r~ivl~GP---gK~tl~~~L~~~ 125 (295)
T 1kjw_A 105 ARPIIILGP---TKDRANDDLLSE 125 (295)
T ss_dssp CCCEEEEST---THHHHHHHHHHH
T ss_pred CCEEEEECC---CHHHHHHHHHhh
Confidence 356778887 699999998753
No 338
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=35.80 E-value=20 Score=26.14 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=12.3
Q ss_pred EEEecCCCCcHHHH
Q 037814 207 ISLVGMGGIGKTTL 220 (229)
Q Consensus 207 i~IvG~gGvGKTTL 220 (229)
+-|++..|.|||..
T Consensus 54 ~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 54 VLAQAQSGTGKTGT 67 (224)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 67899999999976
No 339
>1nu7_D Staphylocoagulase; thrombin non-proteolytic activator, hydrolase-hydrolase INHI complex, protein binding; HET: 0ZJ; 2.20A {Staphylococcus aureus} SCOP: a.8.6.1 a.8.6.1 PDB: 1nu9_C*
Probab=35.68 E-value=1e+02 Score=23.83 Aligned_cols=48 Identities=13% Similarity=0.231 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 037814 31 VGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNTA 86 (229)
Q Consensus 31 ~~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~yd~eD~lD~~~~~ 86 (229)
-+++...|...|++|-+.-.+ .....+..+ .++...|.|.|||+|--.
T Consensus 182 ~~~~a~eL~~KLDlIlG~~~~--~~ritNeRi------~ke~ieDLesIIDdFF~e 229 (282)
T 1nu7_D 182 HKTEALELKAKVDLVLGDEDK--PHRISNERI------EKEMIKDLESIIEDFFIE 229 (282)
T ss_dssp THHHHHHHHHHHHHHHCCTTS--CCCCCSHHH------HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccccc--ccccchHHH------HHHHHHHHHHHHHHHHHH
Confidence 667788888888887444443 233445533 445667889999998843
No 340
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=35.30 E-value=41 Score=16.19 Aligned_cols=16 Identities=19% Similarity=0.476 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 037814 38 LTSSLRAVQAVLHDAE 53 (229)
Q Consensus 38 L~~~l~~i~~~l~~a~ 53 (229)
|+.+++.++++++..+
T Consensus 4 lee~~r~l~~ivq~lq 19 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQ 19 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 341
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=35.14 E-value=32 Score=27.28 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=13.5
Q ss_pred EEEEEecCCCCcHHHHH
Q 037814 205 RIISLVGMGGIGKTTLA 221 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa 221 (229)
.-+-|++.-|.|||..+
T Consensus 45 ~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34678899999999754
No 342
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=35.01 E-value=21 Score=26.36 Aligned_cols=14 Identities=29% Similarity=0.223 Sum_probs=12.0
Q ss_pred EEEecCCCCcHHHH
Q 037814 207 ISLVGMGGIGKTTL 220 (229)
Q Consensus 207 i~IvG~gGvGKTTL 220 (229)
+-|++..|.|||+.
T Consensus 65 ~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 65 VLGAAKTGSGKTLA 78 (236)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEEeCCCCcHHHH
Confidence 56789999999984
No 343
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=34.89 E-value=19 Score=31.88 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=16.0
Q ss_pred EEEEEecCCCCcHHHHHHH
Q 037814 205 RIISLVGMGGIGKTTLAQF 223 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~ 223 (229)
..+-|+|..|.|||+.+..
T Consensus 47 ~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHH
Confidence 4678999999999999843
No 344
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=34.80 E-value=25 Score=27.88 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=16.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.++|+|-|-.| |||-...++
T Consensus 108 ~~~IaVTGTnG--KTTTt~ll~ 127 (326)
T 3eag_A 108 HWVLGVAGTHG--KTTTASMLA 127 (326)
T ss_dssp SEEEEEESSSC--HHHHHHHHH
T ss_pred CCEEEEECCCC--HHHHHHHHH
Confidence 57999998765 999888765
No 345
>1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive cooperativity, two substrate binding sites; HET: A3P NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A* 3u3o_A* 3u3k_A* 3u3m_A* 3u3j_A* 3u3r_A* 1z28_A* 3qvv_A* 3qvu_A* 1z29_A* 1cjm_A 2a3r_A*
Probab=34.29 E-value=23 Score=27.47 Aligned_cols=20 Identities=15% Similarity=0.009 Sum_probs=16.2
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-|-|+|++.+| ||+++.|.
T Consensus 39 ~di~i~s~PKSG-TTwl~~il 58 (295)
T 1ls6_A 39 DDLLISTYPKSG-TTWVSQIL 58 (295)
T ss_dssp TCEEEEESTTSS-HHHHHHHH
T ss_pred CCEEEEeCCCCc-hHHHHHHH
Confidence 347899999999 88887753
No 346
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=33.79 E-value=20 Score=27.47 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=13.1
Q ss_pred EecCCCCcHHHHHHHH
Q 037814 209 LVGMGGIGKTTLAQFA 224 (229)
Q Consensus 209 IvG~gGvGKTTLa~~v 224 (229)
|++..|.|||..+-.+
T Consensus 133 l~~~tGsGKT~~~~~~ 148 (282)
T 1rif_A 133 LNLPTSAGRSLIQALL 148 (282)
T ss_dssp ECCCTTSCHHHHHHHH
T ss_pred EEcCCCCCcHHHHHHH
Confidence 4999999999987543
No 347
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=33.46 E-value=62 Score=17.70 Aligned_cols=36 Identities=14% Similarity=0.360 Sum_probs=26.3
Q ss_pred ccccccCchhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 037814 116 ASCFARKPLVLRRDIALKIKEINETLDDIAKQRDMF 151 (229)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~i~~i~~~l~~~~~~~~~~ 151 (229)
.||.|-.-+.|..+....++.+..+++.+.++...+
T Consensus 7 dpC~CEslv~FQ~~v~~~l~~Lt~kL~~vt~rle~l 42 (47)
T 1aq5_A 7 DPCECKSIVKFQTKVEELINTLQQKLEAVAKRIEAL 42 (47)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456566667777778888888888888887765443
No 348
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=33.39 E-value=21 Score=25.65 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=12.2
Q ss_pred EEEecCCCCcHHHHH
Q 037814 207 ISLVGMGGIGKTTLA 221 (229)
Q Consensus 207 i~IvG~gGvGKTTLa 221 (229)
+-|++..|.|||..+
T Consensus 43 ~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 43 ILARAKNGTGKSGAY 57 (206)
T ss_dssp EEEECCSSSTTHHHH
T ss_pred EEEECCCCCchHHHH
Confidence 668899999999643
No 349
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine, sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB: 2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Probab=33.25 E-value=25 Score=27.36 Aligned_cols=20 Identities=20% Similarity=0.008 Sum_probs=16.4
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-|-|+|++.+| ||+++.|.
T Consensus 39 ~di~i~s~PKSG-TTWl~~il 58 (295)
T 2zpt_X 39 DDILISTYPKSG-TTWVSEIL 58 (295)
T ss_dssp TCEEEEESTTSS-HHHHHHHH
T ss_pred CCEEEEecCccc-hHHHHHHH
Confidence 457899999999 88887764
No 350
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=33.10 E-value=24 Score=31.16 Aligned_cols=17 Identities=35% Similarity=0.272 Sum_probs=14.8
Q ss_pred EEEEecCCCCcHHHHHH
Q 037814 206 IISLVGMGGIGKTTLAQ 222 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~ 222 (229)
.+-|+|..|.|||+.+.
T Consensus 42 ~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 42 NLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp CEEEECSSHHHHHHHHH
T ss_pred cEEEEcCCccHHHHHHH
Confidence 56789999999999874
No 351
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=33.00 E-value=24 Score=25.67 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=12.9
Q ss_pred EEEecCCCCcHHHHHH
Q 037814 207 ISLVGMGGIGKTTLAQ 222 (229)
Q Consensus 207 i~IvG~gGvGKTTLa~ 222 (229)
+-|++..|.|||..+-
T Consensus 54 ~li~~~TGsGKT~~~~ 69 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVFV 69 (220)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCchhhhhh
Confidence 6678899999997543
No 352
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=32.54 E-value=33 Score=28.59 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=16.7
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
+++||+|-|-.| |||-+..++
T Consensus 99 ~~~vI~VTGTnG--KTTT~~~l~ 119 (452)
T 1gg4_A 99 PARVVALTGSSG--KTSVKEMTA 119 (452)
T ss_dssp CCEEEEEECSSC--HHHHHHHHH
T ss_pred CCCEEEEeCCCC--cHHHHHHHH
Confidence 478999988765 999887765
No 353
>2gwh_A Sulfotransferase 1C2; sulfate conjugation, pentachlorophenol, PA pesticide, structural genomics, structural genomics consort transferase; HET: A3P PCI; 1.80A {Homo sapiens} PDB: 2ad1_A*
Probab=31.82 E-value=27 Score=27.18 Aligned_cols=19 Identities=21% Similarity=0.043 Sum_probs=15.3
Q ss_pred EEEEecCCCCcHHHHHHHHh
Q 037814 206 IISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~vy 225 (229)
-|-|+|++.+| ||+++.|.
T Consensus 43 di~i~s~PKSG-TTWl~~il 61 (298)
T 2gwh_A 43 DLLISTYPKAG-TTWTQEIV 61 (298)
T ss_dssp CEEEEESTTSS-HHHHHHHH
T ss_pred CEEEEecCCcc-HHHHHHHH
Confidence 46799999999 88877753
No 354
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=31.66 E-value=72 Score=24.76 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=32.1
Q ss_pred CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
+..++|...+-.=++..|..... +..-+.+.|+|.||+|+.......
T Consensus 96 ~g~l~G~NTD~~G~~~~L~~~~~--~~~~k~vlvlGaGGaaraia~~L~ 142 (282)
T 3fbt_A 96 REGISGFNTDYIGFGKMLSKFRV--EIKNNICVVLGSGGAARAVLQYLK 142 (282)
T ss_dssp SSCEEEECCHHHHHHHHHHHTTC--CCTTSEEEEECSSTTHHHHHHHHH
T ss_pred CCEEEeeCCcHHHHHHHHHHcCC--CccCCEEEEECCcHHHHHHHHHHH
Confidence 34578888888777777754221 122356779999999998776543
No 355
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=30.67 E-value=30 Score=30.81 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=18.6
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-|-|-|-.|.|||.-++.|-
T Consensus 95 QsIiisGESGAGKTe~tK~i~ 115 (697)
T 1lkx_A 95 QCVIISGESGAGKTEASKKIM 115 (697)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEecCCCCCCchhhHHHHH
Confidence 678899999999999998874
No 356
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=30.36 E-value=48 Score=25.72 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=30.6
Q ss_pred CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHH
Q 037814 176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQF 223 (229)
Q Consensus 176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~ 223 (229)
+..++|...+..=++.-|..... +-.-+.+.|+|.||+|+......
T Consensus 101 ~g~l~G~NTD~~G~~~~l~~~~~--~l~~k~vlVlGaGG~g~aia~~L 146 (283)
T 3jyo_A 101 TGHTTGHNTDVSGFGRGMEEGLP--NAKLDSVVQVGAGGVGNAVAYAL 146 (283)
T ss_dssp TSCEEEECHHHHHHHHHHHHHCT--TCCCSEEEEECCSHHHHHHHHHH
T ss_pred CCeEEEecCCHHHHHHHHHHhCc--CcCCCEEEEECCcHHHHHHHHHH
Confidence 44678887777777766643211 12235778999999999876544
No 357
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=30.28 E-value=28 Score=25.47 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=12.2
Q ss_pred EEEecCCCCcHHHHH
Q 037814 207 ISLVGMGGIGKTTLA 221 (229)
Q Consensus 207 i~IvG~gGvGKTTLa 221 (229)
+-|++..|.|||..+
T Consensus 60 ~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 60 LIVVAQTGTGKTLSY 74 (228)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 467899999999754
No 358
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein structure initiative, structural genomics consortium, SGC, alternative splicing; HET: A3P; 1.80A {Homo sapiens} SCOP: c.37.1.5
Probab=29.56 E-value=31 Score=26.81 Aligned_cols=20 Identities=20% Similarity=0.029 Sum_probs=16.3
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-|-|+|++.+| ||+++.|.
T Consensus 40 ~di~i~s~PKsG-TTwl~~il 59 (296)
T 3bfx_A 40 DDLLICTYPKAG-TTWIQEIV 59 (296)
T ss_dssp TCEEEEECTTSS-HHHHHHHH
T ss_pred CCEEEEeccccc-HHHHHHHH
Confidence 457899999999 88887753
No 359
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=29.44 E-value=46 Score=26.63 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=13.8
Q ss_pred EEEEEecCCCCcHHHHH
Q 037814 205 RIISLVGMGGIGKTTLA 221 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa 221 (229)
..+-|++..|.|||..+
T Consensus 65 ~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 65 QNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCchHHHHH
Confidence 35678899999999864
No 360
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=29.06 E-value=13 Score=29.72 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=13.2
Q ss_pred EEEEEecCCCCcHHH
Q 037814 205 RIISLVGMGGIGKTT 219 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTT 219 (229)
+.++|+|+|.+|+..
T Consensus 142 ~tvGIiG~G~IG~~v 156 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRV 156 (334)
T ss_dssp SEEEEECCSHHHHHH
T ss_pred cEEEEECcchHHHHH
Confidence 589999999999864
No 361
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=28.87 E-value=34 Score=30.97 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=18.9
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-.-|-|-|-.|.|||.=++.|-
T Consensus 171 nQsIiiSGESGAGKTe~tK~im 192 (783)
T 4db1_A 171 NQSILITGESGAGKTVNTKRVI 192 (783)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEeCCCCCCCchHHHHHH
Confidence 3678899999999999988874
No 362
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.37 E-value=73 Score=27.15 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=13.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 037814 30 GVGKEVKKLTSSLRAVQAVLHDAE 53 (229)
Q Consensus 30 ~~~~~l~~L~~~l~~i~~~l~~a~ 53 (229)
.+...|++|+.+++.++.--.+++
T Consensus 61 DltkrINELKnqLEdlsKnsKdse 84 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSH 84 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhchhHH
Confidence 345556666666666644444433
No 363
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=28.36 E-value=34 Score=30.87 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.6
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-|-|-|-.|.|||.=++.|.
T Consensus 173 QsIiisGESGAGKTe~tK~i~ 193 (770)
T 1w9i_A 173 QSLLITGESGAGKTENTKKVI 193 (770)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEecCCCCcchHHHHHHH
Confidence 677899999999999998874
No 364
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=28.35 E-value=1e+02 Score=18.75 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHH
Q 037814 62 VRLWLDQLRDACYDMEDVLGEWNTA 86 (229)
Q Consensus 62 ~~~wl~~l~~~~yd~eD~lD~~~~~ 86 (229)
...-+.+|..+..+-.|+|.+|...
T Consensus 48 ~~~v~~rV~~Lf~~hpdLi~gFn~F 72 (80)
T 2cr7_A 48 TPGVIRRVSQLFHEHPDLIVGFNAF 72 (80)
T ss_dssp HHHHHHHHHHHGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456678999999999999999954
No 365
>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural genomics conso transferase; 2.24A {Homo sapiens}
Probab=28.26 E-value=25 Score=27.17 Aligned_cols=20 Identities=25% Similarity=0.125 Sum_probs=15.6
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-|-|+|++.+| ||+++.+.
T Consensus 46 ~di~iv~~PKSG-TTwl~~il 65 (284)
T 1zd1_A 46 SDVWIVTYPKSG-TSLLQEVV 65 (284)
T ss_dssp TCEEEEECTTCS-CHHHHHHH
T ss_pred CCEEEEcCCCCH-HHHHHHHH
Confidence 457899999999 77776653
No 366
>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural genom consortium, SGC; HET: A3P; 2.65A {Homo sapiens} PDB: 2h8k_A*
Probab=28.20 E-value=34 Score=26.75 Aligned_cols=19 Identities=21% Similarity=0.041 Sum_probs=15.8
Q ss_pred EEEEecCCCCcHHHHHHHHh
Q 037814 206 IISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~vy 225 (229)
-|-|+|++.+| ||+++.|.
T Consensus 49 di~i~s~PKSG-TTWl~~il 67 (305)
T 2reo_A 49 DLILATYPKSG-TTWMHEIL 67 (305)
T ss_dssp CEEEEECTTSS-HHHHHHHH
T ss_pred CEEEEecCCch-HHHHHHHH
Confidence 47899999999 88887753
No 367
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum}
Probab=27.94 E-value=29 Score=30.04 Aligned_cols=21 Identities=29% Similarity=0.170 Sum_probs=16.1
Q ss_pred CCEEEEEecCCCCcHHHHHHH
Q 037814 203 GPRIISLVGMGGIGKTTLAQF 223 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~ 223 (229)
...-|+--+..|+|||+||-.
T Consensus 262 ~~~yvaaAfPSacGKTnlAMl 282 (610)
T 2zci_A 262 KAYHIAAAFPSACGKTNLAMI 282 (610)
T ss_dssp CEEEEEEECSSSHHHHHHHTC
T ss_pred cEEEEEEecccccchhhHhhc
Confidence 355666668999999999853
No 368
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=27.91 E-value=55 Score=24.98 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=29.2
Q ss_pred CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHH
Q 037814 177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQF 223 (229)
Q Consensus 177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~ 223 (229)
..++|...+-.-++..|..... +-.-+.+.|+|.||+|+......
T Consensus 94 g~l~G~ntD~~G~~~~L~~~~~--~l~~k~vlViGaGg~g~a~a~~L 138 (271)
T 1nyt_A 94 GRLLGDNTDGVGLLSDLERLSF--IRPGLRILLIGAGGASRGVLLPL 138 (271)
T ss_dssp SCEEEECCHHHHHHHHHHHHTC--CCTTCEEEEECCSHHHHHHHHHH
T ss_pred CeEEEeCCCHHHHHHHHHhcCc--CcCCCEEEEECCcHHHHHHHHHH
Confidence 4577776666666666643211 02236789999999999865544
No 369
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=27.86 E-value=33 Score=25.77 Aligned_cols=15 Identities=33% Similarity=0.213 Sum_probs=12.3
Q ss_pred EEEecCCCCcHHHHH
Q 037814 207 ISLVGMGGIGKTTLA 221 (229)
Q Consensus 207 i~IvG~gGvGKTTLa 221 (229)
+-+++..|.|||..+
T Consensus 83 ~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 83 IIGLAETGSGKTGAF 97 (249)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEEcCCCCCchhHh
Confidence 667889999999753
No 370
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=27.68 E-value=28 Score=30.89 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=15.3
Q ss_pred EEEEEecCCCCcHHHHHH
Q 037814 205 RIISLVGMGGIGKTTLAQ 222 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~ 222 (229)
..+-|+|.-|.|||+.+.
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 467899999999999873
No 371
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=27.68 E-value=22 Score=26.36 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=12.4
Q ss_pred EEEecCCCCcHHHHH
Q 037814 207 ISLVGMGGIGKTTLA 221 (229)
Q Consensus 207 i~IvG~gGvGKTTLa 221 (229)
+-|++..|.|||..+
T Consensus 70 ~li~apTGsGKT~~~ 84 (237)
T 3bor_A 70 VIAQAQSGTGKTATF 84 (237)
T ss_dssp EEECCCSSHHHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 567899999999753
No 372
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=27.54 E-value=29 Score=26.34 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=13.0
Q ss_pred EEEecCCCCcHHHHHH
Q 037814 207 ISLVGMGGIGKTTLAQ 222 (229)
Q Consensus 207 i~IvG~gGvGKTTLa~ 222 (229)
+-|++..|.|||..+.
T Consensus 94 ~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 94 LLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CEECCCTTSCHHHHHH
T ss_pred EEEEccCCCCchHHHH
Confidence 5678999999997643
No 373
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=27.07 E-value=36 Score=31.92 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.8
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-|-|-|-.|.|||.=++.|-
T Consensus 145 QsIiiSGESGAGKTestK~im 165 (1052)
T 4anj_A 145 QSIIVSGESGAGKTENTKFVL 165 (1052)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEecCCCCCHHHHHHHHH
Confidence 678899999999999998875
No 374
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=26.61 E-value=27 Score=25.41 Aligned_cols=15 Identities=27% Similarity=0.191 Sum_probs=12.1
Q ss_pred EEEecCCCCcHHHHH
Q 037814 207 ISLVGMGGIGKTTLA 221 (229)
Q Consensus 207 i~IvG~gGvGKTTLa 221 (229)
+-|++..|.|||..+
T Consensus 44 ~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 44 MVGQSQTGTGKTHAY 58 (219)
T ss_dssp EEEECCSSHHHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 457899999999853
No 375
>2qfa_C Inner centromere protein; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=26.36 E-value=85 Score=17.04 Aligned_cols=28 Identities=11% Similarity=0.434 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHhh
Q 037814 41 SLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACY 74 (229)
Q Consensus 41 ~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~y 74 (229)
.-.+++.|+.+++... -.||.++.+=++
T Consensus 15 c~~Kl~eF~~~vdnk~------mvWL~EIeeEA~ 42 (47)
T 2qfa_C 15 CDQKLMEFLCNMDNKD------LVWLEEIQEEAE 42 (47)
T ss_dssp HHHHHHHHHHHHHHTH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchh------hHHHHHHHHHHH
Confidence 3355667777777654 378888876544
No 376
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=26.28 E-value=34 Score=27.37 Aligned_cols=16 Identities=31% Similarity=0.254 Sum_probs=13.0
Q ss_pred EEEecCCCCcHHHHHH
Q 037814 207 ISLVGMGGIGKTTLAQ 222 (229)
Q Consensus 207 i~IvG~gGvGKTTLa~ 222 (229)
+-|++..|.|||+.+.
T Consensus 61 ~li~a~TGsGKT~~~~ 76 (400)
T 1s2m_A 61 ILARAKNGTGKTAAFV 76 (400)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCcHHHHHHH
Confidence 6688999999997543
No 377
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=26.27 E-value=40 Score=30.52 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.6
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-|-|-|-.|.|||.=++.|-
T Consensus 141 QsIiiSGESGAGKTe~tK~i~ 161 (784)
T 2v26_A 141 QSIIVSGESGAGKTENTKFVL 161 (784)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEcCCCCCCceehHHHHH
Confidence 678899999999999988874
No 378
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=25.99 E-value=1.2e+02 Score=18.48 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 037814 43 RAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNTARLKLQ 91 (229)
Q Consensus 43 ~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~yd~eD~lD~~~~~~~~~~ 91 (229)
+.|+.++..++.....++.+...|-++ |+|++|.....+++..
T Consensus 9 ~~L~~Lv~~idp~~~ld~~vee~ll~l------ADdFV~~V~~~ac~lA 51 (76)
T 1h3o_B 9 KKLQDLVREVDPNEQLDEDVEEMLLQI------ADDFIESVVTAACQLA 51 (76)
T ss_dssp HHHHHHHHHHCSSCCCCHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 456777888888777788888777665 4577777666655543
No 379
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=25.88 E-value=53 Score=25.60 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=30.5
Q ss_pred CCcceechhhHHHHHHHhhcCC-CCCCCCCEEEEEecCCCCcHHHHHHH
Q 037814 176 ESEIFGREKEKNELVNRLLCES-SEERKGPRIISLVGMGGIGKTTLAQF 223 (229)
Q Consensus 176 ~~~~vG~~~~~~~l~~~L~~~~-~~~~~~~~Vi~IvG~gGvGKTTLa~~ 223 (229)
...++|.+.+..-+...|.... . +-.-+.+.|+|.||+|+......
T Consensus 114 ~g~l~g~nTd~~G~~~~l~~~~~~--~l~~~~vlVlGaGg~g~aia~~L 160 (297)
T 2egg_A 114 DGRLVGYNTDGLGYVQALEEEMNI--TLDGKRILVIGAGGGARGIYFSL 160 (297)
T ss_dssp TTEEEEECCHHHHHHHHHHHHTTC--CCTTCEEEEECCSHHHHHHHHHH
T ss_pred CCeEeeccCCHHHHHHHHHHhCCC--CCCCCEEEEECcHHHHHHHHHHH
Confidence 3457787777777777775321 0 02235789999999999876554
No 380
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=25.63 E-value=77 Score=24.50 Aligned_cols=46 Identities=28% Similarity=0.476 Sum_probs=30.2
Q ss_pred CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHH
Q 037814 176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQF 223 (229)
Q Consensus 176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~ 223 (229)
+..++|...+-.=++.-|..... +-.-+.+.|+|-||+|+......
T Consensus 100 ~g~l~G~NTD~~G~~~~L~~~~~--~l~~k~vlvlGaGg~g~aia~~L 145 (281)
T 3o8q_A 100 DGEILGDNTDGEGLVQDLLAQQV--LLKGATILLIGAGGAARGVLKPL 145 (281)
T ss_dssp TSCEEEECCHHHHHHHHHHHTTC--CCTTCEEEEECCSHHHHHHHHHH
T ss_pred CCcEEEEecHHHHHHHHHHHhCC--CccCCEEEEECchHHHHHHHHHH
Confidence 34578877777776666643211 12346788999999999865544
No 381
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=25.55 E-value=41 Score=30.50 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=18.7
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-|-|-|-.|.|||.=++.|.
T Consensus 157 QsIiisGESGAGKTe~tK~i~ 177 (795)
T 1w7j_A 157 QSIIVSGESGAGKTVSAKYAM 177 (795)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEeCCCCCCcchHHHHHH
Confidence 678899999999999998874
No 382
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=25.47 E-value=63 Score=26.06 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=19.5
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHH
Q 037814 186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA 221 (229)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa 221 (229)
...|++.++++- -..|=-+|..|.|||.-.
T Consensus 69 ~~plv~~~l~G~------n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 69 IKPTVDDILNGY------NGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp THHHHHHHTTTC------CEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCC------cceEEEECCCCCCcceEe
Confidence 344555555443 245567999999999754
No 383
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=25.37 E-value=58 Score=14.80 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 037814 32 GKEVKKLTSSLRAVQA 47 (229)
Q Consensus 32 ~~~l~~L~~~l~~i~~ 47 (229)
++++..|+.+.+.++.
T Consensus 6 kdevgelkgevralkd 21 (27)
T 3v86_A 6 KDEVGELKGEVRALKD 21 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHH
Confidence 3344444444444433
No 384
>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil, family 84 glycoside hydrolase, carbohydrate binding module; 2.10A {Clostridium perfringens} PDB: 2cbj_A* 2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A* 2ydr_A* 2ydq_A*
Probab=25.33 E-value=2.4e+02 Score=24.52 Aligned_cols=55 Identities=11% Similarity=0.052 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccc--CcHHHHHHHHHHHHHhhhhhhhhhhhH
Q 037814 30 GVGKEVKKLTSSLRAVQAVLHDAEKRQV--KEETVRLWLDQLRDACYDMEDVLGEWN 84 (229)
Q Consensus 30 ~~~~~l~~L~~~l~~i~~~l~~a~~~~~--~~~~~~~wl~~l~~~~yd~eD~lD~~~ 84 (229)
....+++.|..++..|...-........ .-.++..||.++.+......-.|+-+.
T Consensus 487 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~e~~pwl~~~~~~~~a~~~~l~~~~ 543 (594)
T 2v5c_A 487 DASALIEELYGEFARMEEACNNLKANLPEVALEECSRQLDELITLAQGDKASLDMIV 543 (594)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788999999999888777655422 236689999999999999998888877
No 385
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=25.28 E-value=2.4e+02 Score=21.89 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 037814 59 EETVRLWLDQLRDACYDMEDVLGEWNTA 86 (229)
Q Consensus 59 ~~~~~~wl~~l~~~~yd~eD~lD~~~~~ 86 (229)
+.++..-|+||-+++.=|+|+..+....
T Consensus 31 n~tL~gilRQL~dLs~~A~dIF~eL~~e 58 (279)
T 3p8c_D 31 NISLANIIRQLSSLSKYAEDIFGELFNE 58 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999987743
No 386
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=25.18 E-value=26 Score=27.97 Aligned_cols=15 Identities=27% Similarity=0.705 Sum_probs=13.0
Q ss_pred EEEEEecCCCCcHHH
Q 037814 205 RIISLVGMGGIGKTT 219 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTT 219 (229)
+.|+|+|+|.+|+..
T Consensus 146 ~~vgIiG~G~IG~~~ 160 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVA 160 (333)
T ss_dssp SEEEEECCSHHHHHH
T ss_pred CEEEEECcCHHHHHH
Confidence 579999999999864
No 387
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=25.09 E-value=21 Score=28.60 Aligned_cols=18 Identities=28% Similarity=0.691 Sum_probs=14.2
Q ss_pred EEEEEecCCCCcHHHHHHH
Q 037814 205 RIISLVGMGGIGKTTLAQF 223 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~ 223 (229)
+.|+|+|+|.+|+.. |+.
T Consensus 166 ~tvgIIGlG~IG~~v-A~~ 183 (335)
T 2g76_A 166 KTLGILGLGRIGREV-ATR 183 (335)
T ss_dssp CEEEEECCSHHHHHH-HHH
T ss_pred CEEEEEeECHHHHHH-HHH
Confidence 579999999999864 443
No 388
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=24.89 E-value=38 Score=25.12 Aligned_cols=15 Identities=33% Similarity=0.233 Sum_probs=12.1
Q ss_pred EEEecCCCCcHHHHH
Q 037814 207 ISLVGMGGIGKTTLA 221 (229)
Q Consensus 207 i~IvG~gGvGKTTLa 221 (229)
+-+++..|.|||..+
T Consensus 69 ~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 69 MVGVAQTGSGKTLSY 83 (242)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCcCHHHHHH
Confidence 557789999999763
No 389
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=24.88 E-value=33 Score=19.69 Aligned_cols=41 Identities=29% Similarity=0.475 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHHH
Q 037814 31 VGKEVKKLTSSLRAVQAVLHDAEKRQ-VKEETVRLWLDQLRD 71 (229)
Q Consensus 31 ~~~~l~~L~~~l~~i~~~l~~a~~~~-~~~~~~~~wl~~l~~ 71 (229)
+-.++++|+.++.++.+++--..... .+.+.+...+...|+
T Consensus 9 vl~ELeRlkveiQRLE~ml~p~~~~e~v~eeEl~ei~~eARd 50 (67)
T 1wmi_B 9 VLKELERLKVEIQRLEAMLMPEERDEDITEEEIAELLELARD 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCBCCCTTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhc
Confidence 55677888888888877765333322 334444444444443
No 390
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=24.87 E-value=54 Score=29.58 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=12.8
Q ss_pred EEEEEecCCCCcHHHHHHH
Q 037814 205 RIISLVGMGGIGKTTLAQF 223 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~ 223 (229)
.-|.|||.||+| +.+|+.
T Consensus 412 ~~vlvvG~GglG-~~~~~~ 429 (805)
T 2nvu_B 412 CKVLVIGAGGLG-CELLKN 429 (805)
T ss_dssp CCEEEECCSSHH-HHHHHH
T ss_pred CeEEEECCCHHH-HHHHHH
Confidence 356799999999 444443
No 391
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=24.78 E-value=70 Score=26.45 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=14.2
Q ss_pred EEEEEecCCCCcHHHHH
Q 037814 205 RIISLVGMGGIGKTTLA 221 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa 221 (229)
..+-+.|..|.|||..+
T Consensus 132 ~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 132 QNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CEEEEECCSSSSHHHHH
T ss_pred CcEEEEcCCCCchhHHH
Confidence 56778999999999763
No 392
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}
Probab=24.76 E-value=21 Score=28.77 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=13.1
Q ss_pred EEEEEecCCCCcHHH
Q 037814 205 RIISLVGMGGIGKTT 219 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTT 219 (229)
+.|+|+|+|.+|+..
T Consensus 161 ~tvGIIGlG~IG~~v 175 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLV 175 (352)
T ss_dssp CEEEEECCSHHHHHH
T ss_pred CEEEEEeECHHHHHH
Confidence 579999999999864
No 393
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=24.69 E-value=20 Score=28.32 Aligned_cols=15 Identities=40% Similarity=0.829 Sum_probs=12.9
Q ss_pred EEEEEecCCCCcHHH
Q 037814 205 RIISLVGMGGIGKTT 219 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTT 219 (229)
+.|+|+|+|.+|+..
T Consensus 143 ~~vgIIG~G~IG~~~ 157 (313)
T 2ekl_A 143 KTIGIVGFGRIGTKV 157 (313)
T ss_dssp CEEEEESCSHHHHHH
T ss_pred CEEEEEeeCHHHHHH
Confidence 479999999999864
No 394
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=24.68 E-value=44 Score=30.48 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=18.4
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-|-|-|-.|.|||.=++.|-
T Consensus 170 QsIiiSGESGAGKTe~tK~i~ 190 (837)
T 1kk8_A 170 QSCLITGESGAGKTENTKKVI 190 (837)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEeCCCCCCchhhHHHHH
Confidence 677799999999999998874
No 395
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=24.65 E-value=1.3e+02 Score=18.72 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhH
Q 037814 63 RLWLDQLRDACYDMEDVLGEWN 84 (229)
Q Consensus 63 ~~wl~~l~~~~yd~eD~lD~~~ 84 (229)
..-..+|..+..+-.|+|.+|.
T Consensus 62 ~~V~~~V~~LF~~h~DLl~~F~ 83 (89)
T 1g1e_B 62 QEVYAQVARLFKNQEDLLSEFG 83 (89)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHH
Confidence 3566789999999999999998
No 396
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=24.59 E-value=29 Score=26.98 Aligned_cols=17 Identities=18% Similarity=0.538 Sum_probs=14.1
Q ss_pred EEEEEecCCCCcHHHHH
Q 037814 205 RIISLVGMGGIGKTTLA 221 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa 221 (229)
+.|+|+|+|++|+....
T Consensus 156 ~~v~IiG~G~iG~~~a~ 172 (293)
T 3d4o_A 156 ANVAVLGLGRVGMSVAR 172 (293)
T ss_dssp CEEEEECCSHHHHHHHH
T ss_pred CEEEEEeeCHHHHHHHH
Confidence 57899999999987544
No 397
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=24.46 E-value=68 Score=25.51 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=18.6
Q ss_pred HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHH
Q 037814 187 NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA 221 (229)
Q Consensus 187 ~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa 221 (229)
..|++.++++- + .-|--+|..|.|||.-.
T Consensus 67 ~plv~~~l~G~-----n-~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 67 KKIVKDVLEGY-----N-GTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHHHTTC-----C-EEEEEECSTTSSHHHHH
T ss_pred hhhHHHHhCCC-----e-EEEEEECCCCCCCceEe
Confidence 34555555443 2 34556999999999754
No 398
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=24.40 E-value=41 Score=24.87 Aligned_cols=14 Identities=29% Similarity=0.242 Sum_probs=12.0
Q ss_pred EEEecCCCCcHHHH
Q 037814 207 ISLVGMGGIGKTTL 220 (229)
Q Consensus 207 i~IvG~gGvGKTTL 220 (229)
+-+.+..|.|||..
T Consensus 69 ~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 69 LLASAPTGSGKTLA 82 (245)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 57889999999975
No 399
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=24.33 E-value=81 Score=26.55 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.++|+|-|-.| |||-...++
T Consensus 122 ~~~IaVTGTnG--KTTTt~ml~ 141 (494)
T 4hv4_A 122 RHGIAVAGTHG--KTTTTAMLS 141 (494)
T ss_dssp SEEEEEECSSS--HHHHHHHHH
T ss_pred CCEEEEecCCC--hHHHHHHHH
Confidence 47898888765 999888765
No 400
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=24.31 E-value=95 Score=18.74 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=26.0
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHhh--hhhhhhhh
Q 037814 28 VTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACY--DMEDVLGE 82 (229)
Q Consensus 28 ~~~~~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~y--d~eD~lD~ 82 (229)
...++..+..|+.+|+...++-.|.-.-+ ..+..-|.++|.+-. .+..++++
T Consensus 14 ~~e~k~kv~~LQ~eLdtsE~VQrDFVkLS---QsLQvqLE~IRqadt~~qvr~Il~e 67 (79)
T 1tu3_F 14 MFEEKNKAQRLQTELDVSEQVQRDFVKLS---QTLQVQLERIRQADSLERIRAILND 67 (79)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTCCSHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhHHHHHHHHcc
Confidence 34566777888888888877777665542 244444555554322 44444544
No 401
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=24.17 E-value=50 Score=16.27 Aligned_cols=11 Identities=36% Similarity=0.483 Sum_probs=7.8
Q ss_pred CCcHHHHHHHH
Q 037814 214 GIGKTTLAQFA 224 (229)
Q Consensus 214 GvGKTTLa~~v 224 (229)
|+-|++|.|.+
T Consensus 20 GlsKe~LiqaL 30 (32)
T 1g2y_A 20 GLSKEALIQAL 30 (32)
T ss_dssp TCCHHHHHHHH
T ss_pred CCcHHHHHHHh
Confidence 56688887764
No 402
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=24.08 E-value=42 Score=25.00 Aligned_cols=14 Identities=36% Similarity=0.389 Sum_probs=11.5
Q ss_pred EEEecCCCCcHHHH
Q 037814 207 ISLVGMGGIGKTTL 220 (229)
Q Consensus 207 i~IvG~gGvGKTTL 220 (229)
+-+++.-|.|||..
T Consensus 63 ~l~~a~TGsGKT~~ 76 (253)
T 1wrb_A 63 IMACAQTGSGKTAA 76 (253)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCChHHHH
Confidence 56778899999974
No 403
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=23.96 E-value=42 Score=31.31 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.5
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-|-|-|-.|.|||.=++.|.
T Consensus 173 QsIiisGESGAGKTe~~K~i~ 193 (1010)
T 1g8x_A 173 QSLLITGESGAGKTENTKKVI 193 (1010)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEeCCCCCCcchHHHHHH
Confidence 677899999999999998874
No 404
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=23.89 E-value=44 Score=31.18 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.5
Q ss_pred EEEEEecCCCCcHHHHHHHHh
Q 037814 205 RIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.-|-|-|-.|.|||.=++.|.
T Consensus 147 QsIiisGESGAGKTe~~K~i~ 167 (995)
T 2ycu_A 147 QSILCTGESGAGKTENTKKVI 167 (995)
T ss_dssp EEEEEECBTTSSHHHHHHHHH
T ss_pred cEEEecCCCCCCchhhHHHHH
Confidence 677799999999999998874
No 405
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.72 E-value=98 Score=19.82 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=15.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhc
Q 037814 30 GVGKEVKKLTSSLRAVQAVLHDAEKR 55 (229)
Q Consensus 30 ~~~~~l~~L~~~l~~i~~~l~~a~~~ 55 (229)
.+...|..|+.++..++.+|..++++
T Consensus 66 e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 66 ETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445666666666666666666543
No 406
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Probab=23.62 E-value=98 Score=23.73 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=31.4
Q ss_pred CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
+..++|.+.+..-+..-|...... .+ +-+.|+|.||.|+..+....
T Consensus 94 ~g~l~g~NTD~~G~~~~l~~~~~~--~~-~~vlvlGaGgaarav~~~L~ 139 (271)
T 1npy_A 94 NGFLRAYNTDYIAIVKLIEKYHLN--KN-AKVIVHGSGGMAKAVVAAFK 139 (271)
T ss_dssp TTEEEEECHHHHHHHHHHHHTTCC--TT-SCEEEECSSTTHHHHHHHHH
T ss_pred CCEEEeecCCHHHHHHHHHHhCCC--CC-CEEEEECCcHHHHHHHHHHH
Confidence 346788888877777777542211 22 45789999999998776543
No 407
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=23.43 E-value=49 Score=27.31 Aligned_cols=18 Identities=39% Similarity=0.261 Sum_probs=14.9
Q ss_pred EEEecCCCCcHHHHHHHH
Q 037814 207 ISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 207 i~IvG~gGvGKTTLa~~v 224 (229)
+-|++.-|.|||..+-.+
T Consensus 111 ~ll~~~TGsGKT~~~l~~ 128 (472)
T 2fwr_A 111 GCIVLPTGSGKTHVAMAA 128 (472)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHH
Confidence 678899999999987553
No 408
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=23.38 E-value=1.3e+02 Score=18.14 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhH
Q 037814 62 VRLWLDQLRDACYDMEDVLGEWN 84 (229)
Q Consensus 62 ~~~wl~~l~~~~yd~eD~lD~~~ 84 (229)
...-..+|..+..+-.|+|.+|.
T Consensus 42 ~~~v~~rv~~Lf~~hpdLi~gFn 64 (77)
T 2czy_A 42 TPGVIRRVSQLFHEHPDLIVGFN 64 (77)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 44566788999999999999998
No 409
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=23.35 E-value=75 Score=25.12 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=31.9
Q ss_pred CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
+..++|...+-.=++..|..... +-.-+.+.|+|-||+|+.......
T Consensus 128 ~g~l~G~NTD~~Gf~~~L~~~~~--~l~gk~~lVlGaGG~g~aia~~L~ 174 (315)
T 3tnl_A 128 DGVLTGHITDGTGYMRALKEAGH--DIIGKKMTICGAGGAATAICIQAA 174 (315)
T ss_dssp TTEEEEECCHHHHHHHHHHHTTC--CCTTSEEEEECCSHHHHHHHHHHH
T ss_pred CCEEEEeCCCHHHHHHHHHHcCC--CccCCEEEEECCChHHHHHHHHHH
Confidence 44688888888777777754221 122356779999999998766543
No 410
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=23.17 E-value=61 Score=24.79 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=30.1
Q ss_pred CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHH
Q 037814 176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQF 223 (229)
Q Consensus 176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~ 223 (229)
+..++|...+-.-++..|..... +-.-+.+.|+|.||+|+......
T Consensus 93 ~g~l~g~NTD~~G~~~~L~~~~~--~~~~~~vlvlGaGg~g~a~a~~L 138 (272)
T 1p77_A 93 DGKLYADNTDGIGLVTDLQRLNW--LRPNQHVLILGAGGATKGVLLPL 138 (272)
T ss_dssp TSCEEEECCHHHHHHHHHHHTTC--CCTTCEEEEECCSHHHHTTHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHhCC--CcCCCEEEEECCcHHHHHHHHHH
Confidence 34577877777777777654211 12236789999999998765543
No 411
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=23.05 E-value=90 Score=25.14 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=19.8
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHH
Q 037814 186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA 221 (229)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa 221 (229)
...|++.++++-. ..|=-+|..|.|||.-.
T Consensus 94 ~~plv~~~l~G~n------~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 94 TKPILRSFLNGYN------CTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHHHHTTTCC------EEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHhCCCc------eEEEEeCCCCCCceeee
Confidence 3445555555432 45667999999999754
No 412
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=22.97 E-value=22 Score=28.42 Aligned_cols=15 Identities=33% Similarity=0.764 Sum_probs=12.9
Q ss_pred EEEEEecCCCCcHHH
Q 037814 205 RIISLVGMGGIGKTT 219 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTT 219 (229)
+.|+|+|+|.+|+..
T Consensus 147 ~~vgIiG~G~IG~~~ 161 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVF 161 (333)
T ss_dssp SEEEEECCSHHHHHH
T ss_pred CEEEEEccCHHHHHH
Confidence 479999999999864
No 413
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=22.96 E-value=23 Score=27.91 Aligned_cols=15 Identities=33% Similarity=0.771 Sum_probs=12.8
Q ss_pred EEEEEecCCCCcHHH
Q 037814 205 RIISLVGMGGIGKTT 219 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTT 219 (229)
+.|+|+|+|.+|+..
T Consensus 143 ~~vgIiG~G~IG~~~ 157 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQV 157 (307)
T ss_dssp CEEEEECCSHHHHHH
T ss_pred ceEEEEccCHHHHHH
Confidence 479999999999864
No 414
>1q20_A SULT2B1B, sulfotransferase family, cytosolic, 2B, member 1 isoform B; pregnenolone, cholesterol, PAP; HET: A3P PLO; 2.30A {Homo sapiens} SCOP: c.37.1.5 PDB: 1q1z_A* 1q22_A*
Probab=22.69 E-value=50 Score=25.62 Aligned_cols=18 Identities=22% Similarity=0.023 Sum_probs=13.7
Q ss_pred EEEEecCCCCcHHHHHHHH
Q 037814 206 IISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 206 Vi~IvG~gGvGKTTLa~~v 224 (229)
=|-|+|++.+| ||+++.+
T Consensus 49 di~iv~~PKsG-TTwl~~i 66 (299)
T 1q20_A 49 DIFIITYPKSG-TTWMIEI 66 (299)
T ss_dssp CEEEEESTTSS-HHHHHHH
T ss_pred CEEEEccCCCH-HHHHHHH
Confidence 37899999999 6665554
No 415
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.64 E-value=95 Score=25.52 Aligned_cols=30 Identities=30% Similarity=0.204 Sum_probs=19.3
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHH
Q 037814 186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA 221 (229)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa 221 (229)
...+++-.+++- + .-|=-+|.-|.|||.-.
T Consensus 129 v~~lv~~~l~G~-----N-~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 129 VGQLVQSSLDGY-----N-VAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHHHHTTC-----C-EEEEEESCTTSSHHHHH
T ss_pred HHHHHHHHhCCc-----c-eEEEEECCCCCCCceEe
Confidence 334555555543 2 34556999999999654
No 416
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=22.59 E-value=47 Score=24.34 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=11.6
Q ss_pred EEEecCCCCcHHHH
Q 037814 207 ISLVGMGGIGKTTL 220 (229)
Q Consensus 207 i~IvG~gGvGKTTL 220 (229)
+-|++.-|.|||..
T Consensus 64 ~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 64 LIVQAKSGTGKTCV 77 (230)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 56788999999975
No 417
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=22.48 E-value=51 Score=27.54 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=22.0
Q ss_pred chhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814 182 REKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA 224 (229)
Q Consensus 182 ~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v 224 (229)
+....+.+-.++.+ .-+-|+|.-|.|||..+-.+
T Consensus 115 ~~~Q~~ai~~~~~~---------~~~ll~~~tGsGKT~~~~~~ 148 (510)
T 2oca_A 115 HWYQKDAVFEGLVN---------RRRILNLPTSAGRSLIQALL 148 (510)
T ss_dssp CHHHHHHHHHHHHH---------SEEEEECCSTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---------CCcEEEeCCCCCHHHHHHHH
Confidence 44455555555532 23578999999999987543
No 418
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=22.47 E-value=52 Score=28.02 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=16.5
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.++|+|-|-.| |||-...++
T Consensus 122 ~~vIaVTGTnG--KTTTt~li~ 141 (524)
T 3hn7_A 122 RHVIAVAGTHG--KTTTTTMLA 141 (524)
T ss_dssp SEEEEEECSSC--HHHHHHHHH
T ss_pred CcEEEEECCCC--HHHHHHHHH
Confidence 58999999876 999887765
No 419
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=22.36 E-value=58 Score=26.92 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.++|+|-|-.| |||-...+.
T Consensus 104 ~~vI~VTGTnG--KTTT~~ml~ 123 (439)
T 2x5o_A 104 APIVAITGSNG--KSTVTTLVG 123 (439)
T ss_dssp SCEEEEECSSS--HHHHHHHHH
T ss_pred CCEEEEECCCC--HHHHHHHHH
Confidence 57999988876 999877764
No 420
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=22.35 E-value=90 Score=25.37 Aligned_cols=30 Identities=30% Similarity=0.255 Sum_probs=19.3
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHH
Q 037814 186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA 221 (229)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa 221 (229)
...|++-++++-. ..|=-+|.-|.|||.-.
T Consensus 90 ~~plv~~~l~G~n------~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 90 FRPLVDSVLQGFN------GTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHHHHTTCC------EEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhCCCe------eeEEeecCCCCCCCEeE
Confidence 3445555554432 44557999999999654
No 421
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=22.35 E-value=78 Score=25.66 Aligned_cols=29 Identities=24% Similarity=0.237 Sum_probs=19.1
Q ss_pred HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHH
Q 037814 187 NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA 221 (229)
Q Consensus 187 ~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa 221 (229)
..|++.++++- -..|--+|..|.|||.-.
T Consensus 74 ~plv~~~l~G~------n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 74 KSIVTDVLAGY------NGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHHHTTC------CEEEEEECSTTSSHHHHH
T ss_pred hhHHHHHhCCC------ceEEEeecCCCCCCceEE
Confidence 34455555443 245667999999999764
No 422
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=22.34 E-value=32 Score=27.41 Aligned_cols=15 Identities=33% Similarity=0.773 Sum_probs=12.9
Q ss_pred EEEEEecCCCCcHHH
Q 037814 205 RIISLVGMGGIGKTT 219 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTT 219 (229)
+.|+|+|+|.+|+..
T Consensus 147 ~~vgIiG~G~IG~~~ 161 (331)
T 1xdw_A 147 CTVGVVGLGRIGRVA 161 (331)
T ss_dssp SEEEEECCSHHHHHH
T ss_pred CEEEEECcCHHHHHH
Confidence 479999999999864
No 423
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=22.21 E-value=57 Score=27.27 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=16.3
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.++|+|-|-.| |||-+..+.
T Consensus 114 ~~vI~VTGTnG--KTTTt~ml~ 133 (469)
T 1j6u_A 114 KEEFAVTGTDG--KTTTTAMVA 133 (469)
T ss_dssp CCEEEEECSSS--HHHHHHHHH
T ss_pred CCEEEEECCCC--HHHHHHHHH
Confidence 57999998876 999888765
No 424
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=22.09 E-value=70 Score=25.84 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=17.1
Q ss_pred HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHH
Q 037814 188 ELVNRLLCESSEERKGPRIISLVGMGGIGKTT 219 (229)
Q Consensus 188 ~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTT 219 (229)
.|++.++++- + .-|=-+|.-|.|||.
T Consensus 95 plv~~~l~G~-----N-~tifAYGQTGSGKTy 120 (359)
T 3nwn_A 95 DVVSQALDGY-----N-GTIMCYGQTGAGKTY 120 (359)
T ss_dssp HHHHHHHTTC-----C-EEEEEEESTTSSHHH
T ss_pred HHHHHHhCCC-----C-EEEEEeCCCCCCccE
Confidence 4455555443 2 345569999999995
No 425
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=22.09 E-value=74 Score=26.59 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=33.8
Q ss_pred ceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814 179 IFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN 226 (229)
Q Consensus 179 ~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~ 226 (229)
++|..+..+++.+.+...+ +..+-|-|+|-|-+|. .||+.+-+
T Consensus 214 ~i~~~~~i~~~~~~~g~~~----~~~~~v~I~GgG~ig~-~lA~~L~~ 256 (461)
T 4g65_A 214 FVAASNHIRSVMSELQRLE----KPYRRIMIVGGGNIGA-SLAKRLEQ 256 (461)
T ss_dssp EEEETTTHHHHHHHTTGGG----SCCCEEEEECCSHHHH-HHHHHHTT
T ss_pred EEeccchHHHHHHhhcccc----ccccEEEEEcchHHHH-HHHHHhhh
Confidence 5799999999999886544 5578899999888995 67777643
No 426
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=22.00 E-value=80 Score=25.41 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=18.8
Q ss_pred HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHH
Q 037814 187 NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA 221 (229)
Q Consensus 187 ~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa 221 (229)
..|++-++++-. ..|=-+|..|.|||.-.
T Consensus 79 ~plv~~~l~G~n------~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 79 KPLIDAVLEGFN------STIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHHHTTCC------EEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhCCCc------eeEEeecCCCCCCCEEe
Confidence 345555554431 45557999999999753
No 427
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=21.86 E-value=98 Score=25.05 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=18.7
Q ss_pred HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHH
Q 037814 187 NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA 221 (229)
Q Consensus 187 ~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa 221 (229)
..|++.++++- + ..|=-+|.-|.|||.-.
T Consensus 79 ~plv~~~l~G~-----N-~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 79 EEMLQHAFEGY-----N-VCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHHHTTC-----C-EEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhcCC-----e-eEEEEeCCCCCCCceEe
Confidence 34555555443 2 34556999999999754
No 428
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=21.83 E-value=53 Score=30.95 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.0
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
-.-|-|-|-.|.|||.=++.|.
T Consensus 156 ~QsIiisGESGAGKTe~~K~i~ 177 (1080)
T 2dfs_A 156 NQSIIVSGESGAGKTVSAKYAM 177 (1080)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEcCCCCCCccchHHHHH
Confidence 3678899999999999998874
No 429
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=21.82 E-value=47 Score=26.36 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=12.5
Q ss_pred EEEecCCCCcHHHHH
Q 037814 207 ISLVGMGGIGKTTLA 221 (229)
Q Consensus 207 i~IvG~gGvGKTTLa 221 (229)
+-|++..|.|||..+
T Consensus 48 ~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 48 VLCQAKSGMGKTAVF 62 (391)
T ss_dssp EEEECSSCSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 667889999999865
No 430
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=21.63 E-value=1.5e+02 Score=18.09 Aligned_cols=31 Identities=10% Similarity=0.215 Sum_probs=19.5
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 037814 21 AKEQVRLVTGVGKEVKKLTSSLRAVQAVLHD 51 (229)
Q Consensus 21 l~~~~~~~~~~~~~l~~L~~~l~~i~~~l~~ 51 (229)
+..-+.|+..+..+++.|..+...++..+..
T Consensus 45 L~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 45 LRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444556666677777777777766665553
No 431
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=21.50 E-value=87 Score=25.14 Aligned_cols=17 Identities=35% Similarity=0.261 Sum_probs=13.2
Q ss_pred EEEEEecCCCCcHHHHH
Q 037814 205 RIISLVGMGGIGKTTLA 221 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTLa 221 (229)
.-|=-+|.-|.|||.-.
T Consensus 86 ~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 86 VCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCCcEec
Confidence 44556999999999743
No 432
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=21.41 E-value=34 Score=28.44 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=16.4
Q ss_pred CCEEEEEecCCCCcHHHHHHHHh
Q 037814 203 GPRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 203 ~~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
++++|+|-|-.| |||-...++
T Consensus 99 ~~~vI~VTGTnG--KTTT~~~l~ 119 (454)
T 2am1_A 99 TVDVFAVTGSNG--KTTTKDMLA 119 (454)
T ss_dssp CCEEEEEECCCS--SSCHHHHHH
T ss_pred CCCEEEEeCCCC--cHHHHHHHH
Confidence 478999988876 988777665
No 433
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=21.34 E-value=49 Score=25.86 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=16.1
Q ss_pred CEEEEEecCCCCcHHHHHHHHhcC
Q 037814 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy~d 227 (229)
.+-|.|+|. ||+||.+.+.++
T Consensus 100 ~RpvVl~Gp---~K~tl~~~Ll~~ 120 (292)
T 3tvt_A 100 TRPVIILGP---LKDRINDDLISE 120 (292)
T ss_dssp CCCEEEEST---THHHHHHHHHHH
T ss_pred CCeEEEeCC---CHHHHHHHHHHh
Confidence 466778887 499999988754
No 434
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=21.31 E-value=88 Score=25.40 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=19.3
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHH
Q 037814 186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA 221 (229)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa 221 (229)
...|++.++++-. ..|=-+|..|.|||.-.
T Consensus 89 ~~plv~~~l~G~n------~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 89 VSPLIEEVLNGYN------CTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHHHTCC------EEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCce------EEEEeecCCCCCcceec
Confidence 3445555554431 45667999999999654
No 435
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=21.19 E-value=69 Score=26.74 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.++|+|-|-.| |||-...+.
T Consensus 118 ~~vI~VTGTnG--KTTTt~ml~ 137 (475)
T 1p3d_A 118 RHGIAVAGTHG--KTTTTAMIS 137 (475)
T ss_dssp SEEEEEESSSC--HHHHHHHHH
T ss_pred CCEEEEECCCC--HHHHHHHHH
Confidence 47899988866 999887765
No 436
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=21.18 E-value=96 Score=24.89 Aligned_cols=29 Identities=31% Similarity=0.235 Sum_probs=18.4
Q ss_pred HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHH
Q 037814 187 NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA 221 (229)
Q Consensus 187 ~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa 221 (229)
..+++-.+++-. .-|=-+|.-|.|||.-.
T Consensus 75 ~~lv~~~l~G~n------~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 75 RQLVQSSLDGYN------VCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHHGGGTTCE------EEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHCCcc------eeEEEeCCCCCCCceEe
Confidence 345555554431 34556999999999654
No 437
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=20.97 E-value=37 Score=27.22 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=12.7
Q ss_pred EEEecCCCCcHHHHH
Q 037814 207 ISLVGMGGIGKTTLA 221 (229)
Q Consensus 207 i~IvG~gGvGKTTLa 221 (229)
+-|++.-|.|||+.+
T Consensus 80 ~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 80 VIAQAQSGTGKTATF 94 (414)
T ss_dssp EEECCCSCSSSHHHH
T ss_pred EEEECCCCCcccHHH
Confidence 678899999999864
No 438
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=20.96 E-value=1.2e+02 Score=16.68 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHhhhh
Q 037814 38 LTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDM 76 (229)
Q Consensus 38 L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~yd~ 76 (229)
|......|+++|.+|..... =+.|...=.+|+++-.++
T Consensus 6 L~EQ~~~I~~~I~qAk~~rR-fdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGR-MDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHH
Confidence 45566777888888777533 345555555555554433
No 439
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}
Probab=20.83 E-value=36 Score=27.66 Aligned_cols=16 Identities=38% Similarity=0.673 Sum_probs=13.4
Q ss_pred EEEEEecCCCCcHHHH
Q 037814 205 RIISLVGMGGIGKTTL 220 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTTL 220 (229)
+.|+|+|+|.+|+..-
T Consensus 177 ktvGIIGlG~IG~~vA 192 (365)
T 4hy3_A 177 SEIGIVGFGDLGKALR 192 (365)
T ss_dssp SEEEEECCSHHHHHHH
T ss_pred CEEEEecCCcccHHHH
Confidence 5799999999998643
No 440
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=20.71 E-value=91 Score=25.17 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=18.6
Q ss_pred HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHH
Q 037814 187 NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA 221 (229)
Q Consensus 187 ~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa 221 (229)
..|++-++++-. ..|=-+|..|.|||.-.
T Consensus 78 ~plv~~~l~G~n------~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 78 CPILDEVIMGYN------CTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHHTTCE------EEEEEEECTTSSHHHHH
T ss_pred HHhHHHHhCCCc------eEEEEeCCCCCCCceEE
Confidence 345555554431 45567999999999643
No 441
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=20.65 E-value=74 Score=26.39 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=16.0
Q ss_pred CEEEEEecCCCCcHHHHHHHHh
Q 037814 204 PRIISLVGMGGIGKTTLAQFAY 225 (229)
Q Consensus 204 ~~Vi~IvG~gGvGKTTLa~~vy 225 (229)
.++|+|-|-.| |||-...++
T Consensus 112 ~~~IaVTGTnG--KTTTt~ml~ 131 (451)
T 3lk7_A 112 SQLIGITGSNG--KTTTTTMIA 131 (451)
T ss_dssp SEEEEEECSSC--HHHHHHHHH
T ss_pred CCEEEEECCCC--HHHHHHHHH
Confidence 37999998866 999887764
No 442
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*
Probab=20.61 E-value=4.5e+02 Score=23.44 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccC---cHHHHHHHHHHHHHhhhhhhhhh
Q 037814 31 VGKEVKKLTSSLRAVQAVLHDAEKRQVK---EETVRLWLDQLRDACYDMEDVLG 81 (229)
Q Consensus 31 ~~~~l~~L~~~l~~i~~~l~~a~~~~~~---~~~~~~wl~~l~~~~yd~eD~lD 81 (229)
...+++.|..++..|...-........+ -.++..||..+.++..-+...|+
T Consensus 461 ~~~~~~~L~~~~~~~~~a~~~~~~~~~~~~~~~ei~pwl~~~~~~~~a~~~~l~ 514 (716)
T 2cho_A 461 DKADFETLQYTFERMKESADILLMNTENKPLIVEITPWVHQFKLTAEMGEEVLK 514 (716)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999888776665443221 35788999999887766655553
No 443
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=20.51 E-value=38 Score=27.21 Aligned_cols=15 Identities=40% Similarity=0.849 Sum_probs=13.1
Q ss_pred EEEEEecCCCCcHHH
Q 037814 205 RIISLVGMGGIGKTT 219 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTT 219 (229)
+.|+|+|+|.+|+..
T Consensus 174 ktvGIIGlG~IG~~v 188 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAI 188 (345)
T ss_dssp CEEEEESCSHHHHHH
T ss_pred CEEEEEEeChhHHHH
Confidence 589999999999764
No 444
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=20.51 E-value=97 Score=24.88 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=18.3
Q ss_pred HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHH
Q 037814 188 ELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA 221 (229)
Q Consensus 188 ~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa 221 (229)
.|++.++++- + ..|--+|..|.|||.-.
T Consensus 68 plv~~~l~G~-----n-~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 68 PIIDSAIQGY-----N-GTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHHTTC-----C-EEEEEEESTTSSHHHHH
T ss_pred HHHHHHHcCC-----c-cceeeecCCCCCCCeEE
Confidence 4555555443 2 34556999999999754
No 445
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=20.44 E-value=1e+02 Score=25.04 Aligned_cols=28 Identities=32% Similarity=0.173 Sum_probs=18.1
Q ss_pred HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHH
Q 037814 188 ELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA 221 (229)
Q Consensus 188 ~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa 221 (229)
.|++-++++- + .-|=-+|..|.|||.-.
T Consensus 106 ~lv~~~l~G~-----N-~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 106 MLVQSALDGY-----P-VCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHHGGGGTC-----C-EEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCC-----c-eEEEEeCCCCCCCceEe
Confidence 4555555443 2 34556999999999754
No 446
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1
Probab=20.25 E-value=39 Score=26.71 Aligned_cols=15 Identities=27% Similarity=0.747 Sum_probs=12.9
Q ss_pred EEEEEecCCCCcHHH
Q 037814 205 RIISLVGMGGIGKTT 219 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTT 219 (229)
+.|+|+|+|.+|+..
T Consensus 147 ~~vgIIG~G~IG~~~ 161 (320)
T 1gdh_A 147 KTLGIYGFGSIGQAL 161 (320)
T ss_dssp CEEEEECCSHHHHHH
T ss_pred CEEEEECcCHHHHHH
Confidence 479999999999864
No 447
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=20.20 E-value=1.1e+02 Score=24.72 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=19.3
Q ss_pred HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHH
Q 037814 187 NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA 221 (229)
Q Consensus 187 ~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa 221 (229)
..|++-++++-. .-|=-+|.-|.|||.-.
T Consensus 82 ~~lv~~~l~G~n------~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 82 ENILQNAFDGYN------ACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHHTTCC------EEEEEEECTTSSHHHHH
T ss_pred HHHHHHHhCCce------eEEEeeCCCCCCCceEE
Confidence 345555554432 45667999999999754
No 448
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=20.07 E-value=30 Score=27.55 Aligned_cols=15 Identities=33% Similarity=0.725 Sum_probs=13.0
Q ss_pred EEEEEecCCCCcHHH
Q 037814 205 RIISLVGMGGIGKTT 219 (229)
Q Consensus 205 ~Vi~IvG~gGvGKTT 219 (229)
+.|+|+|+|.+|+..
T Consensus 146 ~tvGIIG~G~IG~~v 160 (330)
T 4e5n_A 146 ATVGFLGMGAIGLAM 160 (330)
T ss_dssp CEEEEECCSHHHHHH
T ss_pred CEEEEEeeCHHHHHH
Confidence 589999999999764
Done!